RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2243
         (405 letters)



>gnl|CDD|218485 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone
           oxidoreductase.  Electron-transfer
           flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the
           inner mitochondrial membrane accepts electrons from
           electron-transfer flavoprotein which is located in the
           mitochondrial matrix and reduces ubiquinone in the
           mitochondrial membrane. The two redox centres in the
           protein, FAD and a [4Fe4S] cluster, are present in a
           64-kDa monomer.
          Length = 110

 Score =  148 bits (375), Expect = 8e-44
 Identities = 53/80 (66%), Positives = 61/80 (76%)

Query: 291 TPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEGDQPAHLTLKDDSV 350
           T K  K D+  LKPASECKPI+YPKPDG+++FD LSSV L+ TNHE DQP HL LKD SV
Sbjct: 23  TLKHHKPDHAALKPASECKPIDYPKPDGKLTFDRLSSVFLSNTNHEEDQPCHLKLKDPSV 82

Query: 351 PVNTNLAVYDGPEGRFCPAG 370
           P+  NL  Y GPE R+CPAG
Sbjct: 83  PIAVNLPKYAGPEQRYCPAG 102


>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse
           transcriptases.  Ribonuclease H (RNase H) is classified
           into two families, type 1 (prokaryotic RNase HI,
           eukaryotic RNase H1 and viral RNase H) and type 2
           (prokaryotic RNase HII and HIII, and eukaryotic RNase
           H2). Ribonuclease HI (RNase HI) is an endonuclease that
           cleaves the RNA strand of an RNA/DNA hybrid in a
           sequence non-specific manner. RNase H is widely present
           in various organisms, including bacteria, archaea and
           eukaryotes.  RNase HI has also been observed as an
           adjunct domain to the reverse transcriptase gene in
           retroviruses, long-term repeat (LTR)-bearing
           retrotransposons and non-LTR retrotransposons. RNase HI
           in LTR retrotransposons perform degradation of the
           original RNA template, generation of a polypurine tract
           (the primer for plus-strand DNA synthesis), and final
           removal of RNA primers from newly synthesized minus and
           plus strands. The catalytic residues for RNase H
           enzymatic activity, three aspartatic acids and one
           glutamatic acid residue (DEDD), are unvaried across all
           RNase H domains. The position of the RNase domain of
           non-LTR and LTR transposons is at the carboxyl terminal
           of the reverse transcriptase (RT) domain and their RNase
           domains group together, indicating a common evolutionary
           origin. Many non-LTR transposons have lost the RNase
           domain because their activity is at the nucleus and
           cellular RNase may suffice; however LTR retotransposons
           always encode their own RNase domain because it requires
           RNase activity in RNA-protein particles in the
           cytoplasm. RNase H inhibitors have been explored as an
           anti-HIV drug target because RNase H inactivation
           inhibits reverse transcription.
          Length = 128

 Score =  128 bits (323), Expect = 5e-36
 Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 148 QVYTDGSKSDSSVGCAFVIPQLHIVKKQ-TLNPKSSIFHAELLAISDAVSTIKSQSIG-- 204
            +YTDGSK +   G  F I +   + +   L P  S+F AELLAI +A+     +     
Sbjct: 1   VIYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRAR 60

Query: 205 EAVIISDSLSALQAISSMSHSNPLVQSIHEEISTI--PNSTIKFFWCPSHVGIAGNDAAD 262
           +  I SDS +AL+A+ S   S+PLV  I + I  +      ++  W P H GI GN+ AD
Sbjct: 61  KITIFSDSQAALKALRSPRSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEGNERAD 120

Query: 263 LEAKSA 268
             AK A
Sbjct: 121 RLAKEA 126


>gnl|CDD|215695 pfam00075, RNase_H, RNase H.  RNase H digests the RNA strand of an
           RNA/DNA hybrid. Important enzyme in retroviral
           replication cycle, and often found as a domain
           associated with reverse transcriptases. Structure is a
           mixed alpha+beta fold with three a/b/a layers.
          Length = 126

 Score = 75.8 bits (187), Expect = 9e-17
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 149 VYTDGS--KSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEA 206
           VYTDGS   +    G  +V        K    P ++   AELLA+ +A+  +  Q +   
Sbjct: 6   VYTDGSCNGNPGPGGAGYVTDGGKQRSKP--LPGTTNQRAELLALIEALEALSGQKV--- 60

Query: 207 VIISDSLSALQAISSM----SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
            I +DS   +  I++     S S P+   I E +       +   W P H GI GN+ AD
Sbjct: 61  NIYTDSQYVIGGITNGWPTKSESKPIKNEIWELLQK--KHKVYIQWVPGHSGIPGNELAD 118

Query: 263 LEAKSALE 270
             AK    
Sbjct: 119 KLAKQGAS 126


>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and
           repair].
          Length = 154

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 29/155 (18%)

Query: 147 VQVYTDGSKSD--SSVGCAFVI--PQLHIV-----KKQTLNPKSSIFHAELLAISDAVST 197
           V+++TDG+        G   V+              + T N       AEL A+ +A+  
Sbjct: 4   VEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNN------RAELRALIEALEA 57

Query: 198 IKSQSIGEAVIISDSLSALQAISSMSHSNPL------------VQSIHEEIST--IPNST 243
           +K     E  + +DS   ++ I+                     + + EE+      +  
Sbjct: 58  LKELGACEVTLYTDSKYVVEGITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHEL 117

Query: 244 IKFFWCPSHVGIAGNDAADLEAKSALENPISHDHG 278
           + + W   H G   N+ AD  A+ A          
Sbjct: 118 VFWEWVKGHAGHPENERADQLAREAARAAKKSATP 152


>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and
           more complex than their prokaryotic counterparts  and
           unlike prokaryote, RNase H are essential in higher
           eukaryote.  Ribonuclease H (RNase H) is classified into
           two families, type 1 (prokaryotic RNase HI, eukaryotic
           RNase H1 and viral RNase H) and type 2 (prokaryotic
           RNase HII and HIII, and eukaryotic RNase H2). RNase H is
           an endonuclease that cleaves the RNA strand of an
           RNA/DNA hybrid in a sequence non-specific manner. RNase
           H is involved in DNA replication, repair and
           transcription. One of the important functions of RNase H
           is to remove Okazaki fragments during DNA replication.
           RNase H is widely present in various organisms,
           including bacteria, archaea and eukaryote and most
           prokaryotic and eukaryotic genomes contain multiple
           RNase H genes. Despite the lack of amino acid sequence
           homology, Type 1 and type 2 RNase H share a main-chain
           fold and steric configurations of the four acidic
           active-site (DEDD)  residues and have the same catalytic
           mechanism and functions in cells.  Eukaryotic RNase H is
           longer and more complex than in prokaryotes. Almost all
           eukaryotic RNase HI have highly conserved regions at the
           N-terminal called hybrid binding domain (HBD). It is
           speculated that the HBD contributes to binding the
           RNA/DNA hybrid. Prokaryotes and some single-cell
           eukaryotes do not require RNase H for viability, but
           RNase H is essential in higher eukaryotes. RNase H
           knockout mice lack mitochondrial DNA replication and die
           as embryos.
          Length = 150

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 39/155 (25%)

Query: 149 VYTDGS-----KSDSSVGCAFVIPQLHI--------VKKQTLNPKSSIFHAELLAISDAV 195
           VYTDG+     +S +  G        H            QT         AEL A+  A+
Sbjct: 2   VYTDGACRGNGRSGARAGYGVYFGPGHPRNVSERLPGPPQTNQ------RAELRAVIHAL 55

Query: 196 STIKSQSIG--EAVIISDSLSALQAISSMSHS-----------NP-----LVQSIHEEIS 237
             IK    G  + VI +DS   +  ++                 P     L++ + + + 
Sbjct: 56  RLIKEVGEGLTKLVIATDSEYVVNGVTEWIPKWKKNGWKTSKGKPVANKDLIKELDKLLE 115

Query: 238 TI--PNSTIKFFWCPSHVGIAGNDAADLEAKSALE 270
            +      +KF+  P H GI GN+ AD  AK   +
Sbjct: 116 ELEERGIRVKFWHVPGHSGIYGNEEADRLAKKGAD 150


>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA
           strand of an RNA/DNA hybrid in a sequence non-specific
           manner.  Ribonuclease H (RNase H) enzymes are divided
           into two major families, Type 1 and Type 2, based on
           amino acid sequence similarities and biochemical
           properties. RNase H is an endonuclease that cleaves the
           RNA strand of an RNA/DNA hybrid in a sequence
           non-specific manner in the presence of divalent cations.
           RNase H is widely present in various organisms,
           including bacteria, archaea and eukaryotes. Most
           prokaryotic and eukaryotic genomes contain multiple
           RNase H genes. Despite the lack of amino acid sequence
           homology, Type 1 and type 2 RNase H share a main-chain
           fold and steric configurations of the four acidic
           active-site residues and have the same catalytic
           mechanism and functions in cells. RNase H is involved in
           DNA replication, repair and transcription. One of the
           important functions of RNase H is to remove Okazaki
           fragments during DNA replication. RNase H inhibitors
           have been explored as an anti-HIV drug target because
           RNase H inactivation inhibits reverse transcription.
          Length = 123

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 150 YTDGSKSDSS--VGCAFVIPQLH---IVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
            TDGS   +    G   V+       +       P ++   AELLA+ +A+       + 
Sbjct: 1   NTDGSCKGNPGPAGAGGVLRDHEGAWLFAGSLSIPAATNNEAELLALLEALELALDLGLK 60

Query: 205 EAVIISDSLSALQAISSMSHS----NPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDA 260
           + +I +DS   +  I+S S      N L+  I   +S   +  I+F   P      GN+ 
Sbjct: 61  KLIIETDSKYVVDLINSWSKGWKKNNLLLWDILLLLSKFID--IRFEHVPRE----GNEV 114

Query: 261 ADLEAKSAL 269
           AD  AK A 
Sbjct: 115 ADRLAKEAA 123


>gnl|CDD|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term
           repeat retroelements.  Ribonuclease H (RNase H) enzymes
           are divided into two major families, Type 1 and Type 2,
           based on amino acid sequence similarities and
           biochemical properties. RNase H is an endonuclease that
           cleaves the RNA strand of an RNA/DNA hybrid in a
           sequence non-specific manner in the presence of divalent
           cations. RNase H is widely present in various organisms,
           including bacteria, archaea and eukaryote.  RNase HI has
           also been observed as adjunct domains to the reverse
           transcriptase gene in retroviruses, in long-term repeat
           (LTR)-bearing retrotransposons and non-LTR
           retrotransposons. RNase HI in LTR retrotransposons
           perform degradation of the original RNA template,
           generation of a polypurine tract (the primer for
           plus-strand DNA synthesis), and final removal of RNA
           primers from newly synthesized minus and plus strands.
           The catalytic residues for RNase H enzymatic activity,
           three aspartatic acids and one glutamatic acid residue
           (DEDD),  are unvaried across all RNase H domains.
           Phylogenetic patterns of RNase HI of LTR retroelements
           is classified into five major families, Ty3/Gypsy,
           Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate
           retroviruses.  Bel/Pao family has been described only in
           metazoan genomes.  RNase H inhibitors have been explored
           as an anti-HIV drug target because RNase H inactivation
           inhibits reverse transcription.
          Length = 135

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 149 VYTDGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVI 208
           V+TDGS      G A V     +++  TL   +S   AEL+A+  A+   K + +    I
Sbjct: 2   VFTDGSSFVRKAGYAVVTGP-DVLEIATLPYGTSAQRAELIALIRALELAKGKPVN---I 57

Query: 209 ISDSLSALQAISSMSHS---NPLVQS----IHEEISTI------PNSTIKFF--WCPSHV 253
            +DS  A   + ++         +      +   I  +      P            +H 
Sbjct: 58  YTDSAYAFGILHALETIWKERGFLTGKPIALASLILQLQKAIQRPK---PVAVIHIRAHS 114

Query: 254 G-----IAGNDAADLEAKSAL 269
           G       GN  AD  A+ A 
Sbjct: 115 GLPGPLALGNARADQAARQAA 135


>gnl|CDD|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in
           prokaryotes.  Ribonuclease H (RNase H) is classified
           into two evolutionarily unrelated families, type 1
           (prokaryotic RNase HI, eukaryotic RNase H1 and viral
           RNase H) and type 2 (prokaryotic RNase HII and HIII, and
           eukaryotic RNase H2). RNase H is an endonuclease that
           cleaves the RNA strand of an RNA/DNA hybrid in a
           sequence non-specific manner. RNase H is involved in DNA
           replication, repair and transcription. RNase H is widely
           present in various organisms, including bacteria,
           archaea and eukaryotes and most prokaryotic and
           eukaryotic genomes contain multiple RNase H genes.
           Despite the lack of amino acid sequence homology, Type 1
           and type 2 RNase H share a main-chain fold and steric
           configurations of the four acidic active-site (DEDD),
           residues and have the same catalytic mechanism and
           functions in cells.  One of the important functions of
           RNase H is to remove Okazaki fragments during DNA
           replication. Prokaryotic RNase H varies greatly in
           domain structures and substrate specificities.
           Prokaryotes and some single-cell eukaryotes do not
           require RNase H for viability.
          Length = 139

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 34/146 (23%)

Query: 147 VQVYTDGS---KSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHA-----ELLAISDAVSTI 198
           + +YTDG+         G A ++      K+ +               EL A+ +A+  +
Sbjct: 2   ITIYTDGACLGNPGPG-GWAAILRYGDHEKELS----GGEAGTTNNRMELTAVIEALEAL 56

Query: 199 KSQSIGEAVIISDSLSALQAISS-----------MSHSNP-----LVQSIHEEISTIPNS 242
           K       ++ +DS   +  I+             +   P     L Q +   ++     
Sbjct: 57  KEPC--PVLLYTDSQYVINGITKWIHGWKKNGWKTADGKPVKNVDLWQELDALLA---KH 111

Query: 243 TIKFFWCPSHVGIAGNDAADLEAKSA 268
            + + W   H G  GN+ AD  A +A
Sbjct: 112 QVTWHWVKGHAGHPGNERADELANAA 137


>gnl|CDD|205634 pfam13456, RVT_3, Reverse transcriptase-like.  This domain is found
           in plants and appears to be part of a retrotransposon.
          Length = 88

 Score = 34.5 bits (80), Expect = 0.011
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 182 SIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNPLVQSIHEEISTIPN 241
           S   AE  A+ + +       I   ++ SDS   +Q I     +   + ++  EI     
Sbjct: 1   SPLEAEAEALLEGLQLALELGIRRLIVESDSQLVVQQIQGEYEARSRLAALLREI----R 56

Query: 242 STIKFFWCPS--HVGIAGNDAADLEAKSAL 269
             +K F   S  HV    N  AD  AK A 
Sbjct: 57  KLLKKFDSVSVSHVPRECNRVADALAKLAS 86


>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a
           hybrid binding domain (HBD) at the N-terminus.
           Ribonuclease H (RNase H) enzymes are divided into two
           major families, Type 1 and Type 2, based on amino acid
           sequence similarities and biochemical properties. RNase
           H is an endonuclease that cleaves the RNA strand of an
           RNA/DNA hybrid in a sequence non-specific manner in the
           presence of divalent cations.  RNase H is involved in
           DNA replication, repair and transcription.  RNase H is
           widely present in various organisms, including bacteria,
           archaea and eukaryotes and most prokaryotic and
           eukaryotic genomes contain multiple RNase H genes.
           Despite the lack of amino acid sequence homology, Type 1
           and type 2 RNase H share a main-chain fold and steric
           configurations of the four acidic active-site (DEDD)
           residues and have the same catalytic mechanism and
           functions in cells.  One of the important functions of
           RNase H is to remove Okazaki fragments during DNA
           replication. Prokaryotic RNase H varies greatly in
           domain structures and substrate specificities.
           Prokaryotes and some single-cell eukaryotes do not
           require RNase H for viability. Some bacteria
           distinguished from other bacterial RNase HI in the
           presence of a hybrid binding domain (HBD) at the
           N-terminus which is commonly present at the N-termini of
           eukaryotic RNase HI. It has been reported that this
           domain is required for dimerization and processivity of
           RNase HI upon binding to RNA-DNA hybrids.
          Length = 133

 Score = 34.0 bits (79), Expect = 0.035
 Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 26/139 (18%)

Query: 149 VYTDGS--KSDSSVGCAFVIPQLHIVKKQTLNPKSSIFH----------AELLAISDAVS 196
            Y DGS  K     G   VI  L   ++   +   S              E+     A+ 
Sbjct: 3   AYVDGSYNKETKVYGYGVVI--LKNGEEIKFS--GSGNDPELASMRNVAGEIKGAIKAME 58

Query: 197 TIKSQSIGEAVIISDSLSALQAISSM-----SHSNPLVQSIHEEISTIPNS-TIKFFWCP 250
                 I +  I  D     + I          +    +   E +  I     I F    
Sbjct: 59  YAVENGIKKITIYYD----YEGIEKWATGEWKANKEGTKEYKEFMDKIKKKIKISFVKVK 114

Query: 251 SHVGIAGNDAADLEAKSAL 269
           +H G   N+ AD  AK AL
Sbjct: 115 AHSGDKYNELADKLAKKAL 133


>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase
           zinc-binding region. 
          Length = 104

 Score = 31.1 bits (71), Expect = 0.28
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 9/65 (13%)

Query: 150 YTDGSKSDSSVGCAFVIPQLHIV-----KKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
           YT  S     VG   V     I+      +      +   HAE  AI +A    +   + 
Sbjct: 19  YTPYSNF--PVGAVIVKNDGGIIATGYNGENAGYDPTI--HAERNAIRNAGRLGEGIKLE 74

Query: 205 EAVII 209
            A + 
Sbjct: 75  GATLY 79


>gnl|CDD|215581 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 protein;
           Provisional.
          Length = 599

 Score = 31.0 bits (70), Expect = 1.5
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 332 GTNHEGDQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLENHNT 377
             N +  QP  L++ D  VP     A+ D    R    G   N NT
Sbjct: 500 QHNPD-KQPLPLSIMDHQVPPPGTGALADSSSYRLHILGLSGNSNT 544


>gnl|CDD|182265 PRK10144, PRK10144, formate-dependent nitrite reductase complex
           subunit NrfF; Provisional.
          Length = 126

 Score = 29.1 bits (65), Expect = 2.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 8/31 (25%)

Query: 126 MPHQVF--------QQEFQRNMNENYGDFVQ 148
           M HQV+        + E    M E YGDFV+
Sbjct: 62  MRHQVYSMVAEGKSEVEIIGWMTERYGDFVR 92


>gnl|CDD|75628 PRK06548, PRK06548, ribonuclease H; Provisional.
          Length = 161

 Score = 29.0 bits (64), Expect = 2.5
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 228 LVQSIHEEI-STIPNSTIKFFWCPSHVGIAGNDAADLEAKSALEN---PISHDHGIGLTQ 283
           L Q I +EI S + N  I+  W  +H G   N+AAD  A+ A  N     +H  G G T+
Sbjct: 98  LNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTRSAHIPGPGWTE 157

Query: 284 LSG 286
            S 
Sbjct: 158 RSA 160


>gnl|CDD|236905 PRK11396, PRK11396, hypothetical protein; Provisional.
          Length = 191

 Score = 28.7 bits (64), Expect = 3.8
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 235 EISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSALENPISHDHGIGLTQLSG-LFAHTPK 293
           EI T P +   F+W  S   IA N   +      +E  ++   G  +   S   F HT K
Sbjct: 23  EICTFPPAKRDFYWRASIASIAAN--GEFSLFPGMERIVTLLEGGEMFLESADRFNHTLK 80

Query: 294 PQK-----GDNTFLKPASECKPIEYPKPDGQVSFDL 324
           P +      D          + ++     GQ+S D 
Sbjct: 81  PLQPFAFAAD----------QVVKAKLTAGQMSMDF 106


>gnl|CDD|178927 PRK00203, rnhA, ribonuclease H; Reviewed.
          Length = 150

 Score = 28.3 bits (64), Expect = 4.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 243 TIKFFWCPSHVGIAGNDAADLEAKSALENP 272
            IK+ W   H G   N+  D  A++  E  
Sbjct: 114 QIKWHWVKGHAGHPENERCDELARAGAEEA 143


>gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
           Provisional.
          Length = 1331

 Score = 29.2 bits (66), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 182 SIFHAELLAISDAVSTIKSQSIGE 205
           S+ H  L+ + +AV  I +QSIGE
Sbjct: 301 SLAHNHLVDLGEAVGIIAAQSIGE 324


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,531,255
Number of extensions: 1800407
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 19
Length of query: 405
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 306
Effective length of database: 6,546,556
Effective search space: 2003246136
Effective search space used: 2003246136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.8 bits)