BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2244
(73 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|221220904|gb|ACM09113.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 115
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 51 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCIL 84
>gi|403183200|gb|EJY57925.1| AAEL017317-PA [Aedes aegypti]
Length = 279
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE+RPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 242 ECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVF 276
>gi|241853658|ref|XP_002415907.1| RNA polymerases I, II and III shared polypeptide, putative
[Ixodes scapularis]
gi|215510121|gb|EEC19574.1| RNA polymerases I, II and III shared polypeptide, putative
[Ixodes scapularis]
Length = 59
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIRPRDPIRCRECGYRIMYKKRTKR I++
Sbjct: 22 ECHQENEIRPRDPIRCRECGYRIMYKKRTKRLIVF 56
>gi|307207023|gb|EFN84846.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Harpegnathos saltator]
Length = 38
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 34/36 (94%)
Query: 21 LECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
LECH +NEIR +DPIRCRECGYRIMYKKRTKRCIL+
Sbjct: 2 LECHNDNEIRQKDPIRCRECGYRIMYKKRTKRCILF 37
>gi|431901763|gb|ELK08640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Pteropus alecto]
Length = 66
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRCIL 54
>gi|161077092|ref|NP_001097319.1| Rpb12 [Drosophila melanogaster]
gi|194882899|ref|XP_001975547.1| GG22374 [Drosophila erecta]
gi|195334543|ref|XP_002033937.1| GM20158 [Drosophila sechellia]
gi|195486190|ref|XP_002091399.1| GE12262 [Drosophila yakuba]
gi|195583568|ref|XP_002081589.1| GD25636 [Drosophila simulans]
gi|41617164|tpg|DAA02521.1| TPA_inf: HDC06513 [Drosophila melanogaster]
gi|125660184|gb|ABN49320.1| IP17848p [Drosophila melanogaster]
gi|157400336|gb|ABV53802.1| Rpb12 [Drosophila melanogaster]
gi|190658734|gb|EDV55947.1| GG22374 [Drosophila erecta]
gi|194125907|gb|EDW47950.1| GM20158 [Drosophila sechellia]
gi|194177500|gb|EDW91111.1| GE12262 [Drosophila yakuba]
gi|194193598|gb|EDX07174.1| GD25636 [Drosophila simulans]
Length = 57
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE+RPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|195024974|ref|XP_001985975.1| GH20797 [Drosophila grimshawi]
gi|195123317|ref|XP_002006154.1| GI20882 [Drosophila mojavensis]
gi|195154096|ref|XP_002017958.1| GL17021 [Drosophila persimilis]
gi|195381935|ref|XP_002049688.1| GJ20617 [Drosophila virilis]
gi|198458378|ref|XP_002138535.1| GA24334 [Drosophila pseudoobscura pseudoobscura]
gi|193901975|gb|EDW00842.1| GH20797 [Drosophila grimshawi]
gi|193911222|gb|EDW10089.1| GI20882 [Drosophila mojavensis]
gi|194113754|gb|EDW35797.1| GL17021 [Drosophila persimilis]
gi|194144485|gb|EDW60881.1| GJ20617 [Drosophila virilis]
gi|198136322|gb|EDY69093.1| GA24334 [Drosophila pseudoobscura pseudoobscura]
Length = 57
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE+RPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|346470287|gb|AEO34988.1| hypothetical protein [Amblyomma maculatum]
Length = 59
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIRPRDPIRCRECGYRIMYKKRTKR I++
Sbjct: 22 ECHQENEIRPRDPIRCRECGYRIMYKKRTKRLIVF 56
>gi|157135972|ref|XP_001663644.1| RNA polymerase small Zn-binding subunit, putative [Aedes aegypti]
gi|170033365|ref|XP_001844548.1| RNA polymerase small Zn-binding subunit [Culex quinquefasciatus]
gi|108870059|gb|EAT34284.1| AAEL013457-PA [Aedes aegypti]
gi|167874286|gb|EDS37669.1| RNA polymerase small Zn-binding subunit [Culex quinquefasciatus]
Length = 58
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE+RPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|355779861|gb|EHH64337.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Macaca fascicularis]
Length = 54
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRCIL 54
>gi|194753255|ref|XP_001958932.1| GF12628 [Drosophila ananassae]
gi|190620230|gb|EDV35754.1| GF12628 [Drosophila ananassae]
Length = 591
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 4 SQVLVGKCLPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+Q +G +K +CH ENE+RPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 536 AQQDLGNTSLDKPDKRTTKCHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVF 588
>gi|383850953|ref|XP_003701028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Megachile rotundata]
gi|383850955|ref|XP_003701029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Megachile rotundata]
Length = 57
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH +NEIRPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHDNEIRPRDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|148677144|gb|EDL09091.1| mCG49314 [Mus musculus]
Length = 80
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFKPQTGGF 64
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR ++ + G F
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVLMLDEMGEF 63
>gi|328793478|ref|XP_001122738.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Apis mellifera]
gi|340723949|ref|XP_003400349.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Bombus terrestris]
gi|350422577|ref|XP_003493213.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Bombus impatiens]
gi|380022486|ref|XP_003695075.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Apis florea]
Length = 57
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH +NEIRPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHDNEIRPRDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|449284086|gb|EMC90667.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Columba livia]
Length = 55
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCIL 54
>gi|351695835|gb|EHA98753.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Heterocephalus glaber]
gi|440913290|gb|ELR62757.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Bos grunniens mutus]
Length = 55
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRCIL 54
>gi|156540278|ref|XP_001599352.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Nasonia vitripennis]
Length = 57
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH +NEIRPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHDNEIRPRDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|281350422|gb|EFB26006.1| hypothetical protein PANDA_001870 [Ailuropoda melanoleuca]
Length = 35
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 1 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRCIL 34
>gi|221221374|gb|ACM09348.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 56
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 8 VGKCLPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+ + ++ ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 5 MSDVVAAEMFSLLTECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 53
>gi|291392021|ref|XP_002712576.1| PREDICTED: mCG145114-like [Oryctolagus cuniculus]
Length = 263
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|148676881|gb|EDL08828.1| mCG145114 [Mus musculus]
Length = 115
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 78 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 112
>gi|86355514|ref|NP_001034457.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
isoform a [Mus musculus]
gi|26359412|dbj|BAB25485.2| unnamed protein product [Mus musculus]
gi|26359970|dbj|BAB25578.2| unnamed protein product [Mus musculus]
Length = 99
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 62 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 96
>gi|8248885|gb|AAB27565.2| metallothionein-I gene transcription activator [Mus sp.]
Length = 105
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 68 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 102
>gi|115653155|ref|XP_782969.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Strongylocentrotus purpuratus]
gi|390367289|ref|XP_003731218.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Strongylocentrotus purpuratus]
Length = 64
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIR RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 27 ECHQENEIRARDPIRCRECGYRIMYKKRTKRMVVF 61
>gi|417407525|gb|JAA50368.1| Putative dna-directed rna polymerases i ii and iii subunit rpabc4
isoform a, partial [Desmodus rotundus]
Length = 82
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 45 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 79
>gi|195429737|ref|XP_002062914.1| GK19446 [Drosophila willistoni]
gi|194158999|gb|EDW73900.1| GK19446 [Drosophila willistoni]
Length = 57
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE+R RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHENEMRARDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|242012601|ref|XP_002427018.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212511263|gb|EEB14280.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 57
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC ENEIRPRDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECRHENEIRPRDPIRCRECGYRIMYKKRTKRVVVF 54
>gi|195429753|ref|XP_002062922.1| GK19442 [Drosophila willistoni]
gi|194159007|gb|EDW73908.1| GK19442 [Drosophila willistoni]
Length = 57
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE+R RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 20 ECHHENEMRARDPIRCRECGYRIMYKKRTKRLVVF 54
>gi|426241714|ref|XP_004014734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ovis aries]
Length = 91
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 54 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 88
>gi|225712816|gb|ACO12254.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Lepeophtheirus salmonis]
gi|290462361|gb|ADD24228.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Lepeophtheirus salmonis]
Length = 63
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIR RD IRCRECGYRIMYKKRTKR I++
Sbjct: 26 ECHVENEIRARDAIRCRECGYRIMYKKRTKRLIVF 60
>gi|156359324|ref|XP_001624720.1| predicted protein [Nematostella vectensis]
gi|156211517|gb|EDO32620.1| predicted protein [Nematostella vectensis]
Length = 60
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRT+R IL
Sbjct: 23 ECHTENEIKSRDPIRCRECGYRIMYKKRTRRSIL 56
>gi|293344637|ref|XP_002725788.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
gi|293356445|ref|XP_002728880.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
Length = 107
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRC+ECGYRIMYKKRTKR +++
Sbjct: 49 ECHTENEIKSRDPIRCKECGYRIMYKKRTKRLMVF 83
>gi|345329915|ref|XP_001505747.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ornithorhynchus anatinus]
Length = 98
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/34 (88%), Positives = 31/34 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR IL
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRRIL 54
>gi|225711990|gb|ACO11841.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Lepeophtheirus salmonis]
Length = 63
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIR RD IRCRECGYRIMYKKRTKR I++
Sbjct: 26 ECHVENEIRVRDAIRCRECGYRIMYKKRTKRLIVF 60
>gi|355559300|gb|EHH16028.1| hypothetical protein EGK_11253 [Macaca mulatta]
Length = 58
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|321466908|gb|EFX77901.1| hypothetical protein DAPPUDRAFT_231106 [Daphnia pulex]
Length = 56
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 33/35 (94%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+CH ENE++PRDPIRCRECGYRIMYKKRTKR I++
Sbjct: 19 DCHGENELKPRDPIRCRECGYRIMYKKRTKRLIVF 53
>gi|221220062|gb|ACM08692.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|152012700|gb|AAI50399.1| Zgc:171795 protein [Danio rerio]
Length = 57
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|350535859|ref|NP_001232686.1| putative DNA directed RNA polymerase II polypeptide K variant 1
[Taeniopygia guttata]
gi|326936521|ref|XP_003214302.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Meleagris gallopavo]
gi|363730993|ref|XP_001234883.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Gallus gallus]
gi|449494508|ref|XP_004175311.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Taeniopygia guttata]
gi|197127661|gb|ACH44159.1| putative DNA directed RNA polymerase II polypeptide K variant 1
[Taeniopygia guttata]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|432881568|ref|XP_004073844.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Oryzias latipes]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|340369099|ref|XP_003383086.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Amphimedon queenslandica]
Length = 64
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIRPRDPIRC +CGYRI+YKKRTKR I++
Sbjct: 27 ECHGENEIRPRDPIRCTQCGYRILYKKRTKRIIVF 61
>gi|348588321|ref|XP_003479915.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cavia porcellus]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|86355510|ref|NP_075616.2| DNA-directed RNA polymerases I, II, and III subunit RPABC4
isoform b [Mus musculus]
gi|126322146|ref|XP_001369159.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Monodelphis domestica]
gi|291388351|ref|XP_002710759.1| PREDICTED: DNA directed RNA polymerase II polypeptide K
[Oryctolagus cuniculus]
gi|354489645|ref|XP_003506972.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cricetulus griseus]
gi|2842662|sp|Q63871.2|RPAB4_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=DNA-directed RNA polymerase II
subunit K; AltName: Full=Metallothionein-I gene
transcription activator; AltName: Full=RPB10alpha
gi|12833421|dbj|BAB22516.1| unnamed protein product [Mus musculus]
gi|20306771|gb|AAH28543.1| Polymerase (RNA) II (DNA directed) polypeptide K [Mus musculus]
gi|148697081|gb|EDL29028.1| mCG1040972 [Mus musculus]
gi|344249731|gb|EGW05835.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Cricetulus griseus]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|312283689|ref|NP_001186035.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Danio
rerio]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|348513231|ref|XP_003444146.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Oreochromis niloticus]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|4826924|ref|NP_005025.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Homo
sapiens]
gi|83035107|ref|NP_001032712.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Bos
taurus]
gi|109087128|ref|XP_001096949.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Macaca mulatta]
gi|114621109|ref|XP_001151505.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 1 [Pan troglodytes]
gi|296227488|ref|XP_002759400.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 1 [Callithrix jacchus]
gi|297284907|ref|XP_002802676.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Macaca mulatta]
gi|297683405|ref|XP_002819375.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Pongo abelii]
gi|301756368|ref|XP_002914029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ailuropoda melanoleuca]
gi|311253557|ref|XP_003125601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 1 [Sus scrofa]
gi|332213982|ref|XP_003256107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Nomascus leucogenys]
gi|332830920|ref|XP_003311922.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Pan troglodytes]
gi|335286261|ref|XP_003355060.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 3 [Sus scrofa]
gi|338728548|ref|XP_003365693.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Equus caballus]
gi|345779142|ref|XP_003431830.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Canis lupus familiaris]
gi|390476085|ref|XP_003735071.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 2 [Callithrix jacchus]
gi|392341483|ref|XP_003754348.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
gi|392349463|ref|XP_003750385.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
gi|395512212|ref|XP_003760337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Sarcophilus harrisii]
gi|395818138|ref|XP_003782494.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Otolemur garnettii]
gi|397502201|ref|XP_003821755.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 1 [Pan paniscus]
gi|397502203|ref|XP_003821756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Pan paniscus]
gi|403257212|ref|XP_003921223.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Saimiri boliviensis boliviensis]
gi|403305022|ref|XP_003943075.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Saimiri boliviensis boliviensis]
gi|410987562|ref|XP_004000067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Felis catus]
gi|426235786|ref|XP_004011861.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Ovis aries]
gi|426360376|ref|XP_004047421.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 1 [Gorilla gorilla gorilla]
gi|426360378|ref|XP_004047422.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Gorilla gorilla gorilla]
gi|1710664|sp|P53803.1|RPAB4_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=ABC10-alpha; AltName:
Full=DNA-directed RNA polymerase II subunit K; AltName:
Full=RNA polymerase II 7.0 kDa subunit; Short=RPB7.0;
AltName: Full=RPB10alpha
gi|122140756|sp|Q3ZBC0.1|RPAB4_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=DNA-directed RNA polymerase II
subunit K
gi|717187|emb|CAA87656.1| RNA polymerase II [Homo sapiens]
gi|7981272|emb|CAB91873.1| RPB10alpha [Homo sapiens]
gi|12654013|gb|AAH00806.1| Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Homo
sapiens]
gi|17390349|gb|AAH18157.1| Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Homo
sapiens]
gi|48145857|emb|CAG33151.1| POLR2K [Homo sapiens]
gi|73587155|gb|AAI03451.1| Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Bos
taurus]
gi|119612204|gb|EAW91798.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa, isoform
CRA_a [Homo sapiens]
gi|119612205|gb|EAW91799.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa, isoform
CRA_a [Homo sapiens]
gi|123980512|gb|ABM82085.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
[synthetic construct]
gi|123995329|gb|ABM85266.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
[synthetic construct]
gi|149066525|gb|EDM16398.1| rCG59437, isoform CRA_a [Rattus norvegicus]
gi|149066526|gb|EDM16399.1| rCG59437, isoform CRA_a [Rattus norvegicus]
gi|208967090|dbj|BAG73559.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
[synthetic construct]
gi|296480474|tpg|DAA22589.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Bos taurus]
gi|296480651|tpg|DAA22766.1| TPA: DNA directed RNA polymerase II polypeptide K-like [Bos
taurus]
gi|355746386|gb|EHH51000.1| hypothetical protein EGM_10312 [Macaca fascicularis]
gi|383413723|gb|AFH30075.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Macaca mulatta]
gi|384943874|gb|AFI35542.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Macaca mulatta]
gi|410206652|gb|JAA00545.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Pan
troglodytes]
gi|410258456|gb|JAA17195.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Pan
troglodytes]
gi|410331291|gb|JAA34592.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Pan
troglodytes]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|12858879|dbj|BAB31480.1| unnamed protein product [Mus musculus]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|443718281|gb|ELU08986.1| hypothetical protein CAPTEDRAFT_214436 [Capitella teleta]
Length = 62
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 25 ECHSENEIKARDPIRCRECGYRIMYKKRTKRLVVF 59
>gi|344273302|ref|XP_003408462.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Loxodonta africana]
Length = 58
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|221219316|gb|ACM08319.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 58
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|229367088|gb|ACQ58524.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Anoplopoma fimbria]
Length = 58
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|62858105|ref|NP_001016509.1| polymerase (RNA) II (DNA directed) polypeptide K [Xenopus
(Silurana) tropicalis]
gi|147906621|ref|NP_001085445.1| polymerase (RNA) II (DNA directed) polypeptide K [Xenopus laevis]
gi|163838621|ref|NP_001106214.1| polymerase (RNA) II (DNA directed) polypeptide K [Xenopus laevis]
gi|49117015|gb|AAH72756.1| Polr2ka protein [Xenopus laevis]
gi|51593702|gb|AAH78622.1| Polr2kb protein [Xenopus laevis]
gi|89266749|emb|CAJ83912.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
gi|89267208|emb|CAJ81412.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
gi|213625560|gb|AAI70863.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
gi|213627179|gb|AAI70861.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
Length = 58
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|225707544|gb|ACO09618.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide
[Osmerus mordax]
Length = 58
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|443899865|dbj|GAC77193.1| uncharacterized conserved protein [Pseudozyma antarctica T-34]
Length = 138
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFKPQTGGF 64
+C NEIRPR+PIRCRECG+R+MYKKRTKR + + P G
Sbjct: 34 DCAATNEIRPREPIRCRECGHRVMYKKRTKRMLHFEAPAAVGL 76
>gi|327283842|ref|XP_003226649.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Anolis carolinensis]
Length = 58
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +++
Sbjct: 21 ECHKENEIKARDPIRCRECGYRIMYKKRTKRLVVF 55
>gi|307190742|gb|EFN74644.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Camponotus floridanus]
Length = 35
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH +NEIR +DPIRCRECGYRIMYKKRTKR IL+
Sbjct: 1 ECHHDNEIRSKDPIRCRECGYRIMYKKRTKRRILF 35
>gi|355698131|gb|EHH28679.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Macaca mulatta]
Length = 54
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 24 HFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
H ENEI+ RDPIRCRECGYRIMYKKRTKRCIL
Sbjct: 23 HTENEIKSRDPIRCRECGYRIMYKKRTKRCIL 54
>gi|410910832|ref|XP_003968894.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Takifugu rubripes]
Length = 58
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRI+YKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRILYKKRTKRLVVF 55
>gi|380793279|gb|AFE68515.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Macaca mulatta]
Length = 54
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 31/34 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR ++
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVV 54
>gi|47229350|emb|CAF99338.1| unnamed protein product [Tetraodon nigroviridis]
Length = 58
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCRECGYRI+YKKRTKR +++
Sbjct: 21 ECHTENEIKARDPIRCRECGYRILYKKRTKRLVVF 55
>gi|344282287|ref|XP_003412905.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Loxodonta africana]
Length = 58
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCI 54
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR +
Sbjct: 21 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRWV 53
>gi|332017568|gb|EGI58268.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Acromyrmex echinatior]
Length = 74
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYF 57
ECH +NEIR +D IRCRECGYRIMYKKRTKR + ++
Sbjct: 20 ECHHDNEIRAKDAIRCRECGYRIMYKKRTKRRMFFY 55
>gi|221220306|gb|ACM08814.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 57
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/31 (90%), Positives = 29/31 (93%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
ECH ENEI+ RDPIRCRECGYRIMYKKRTKR
Sbjct: 21 ECHTENEIKARDPIRCRECGYRIMYKKRTKR 51
>gi|313216450|emb|CBY37758.1| unnamed protein product [Oikopleura dioica]
gi|313244182|emb|CBY15019.1| unnamed protein product [Oikopleura dioica]
Length = 65
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECHF E++P+DP+RCRECGYRI+YKKRT+R I++
Sbjct: 28 ECHFNQEVKPKDPVRCRECGYRILYKKRTRRLIVF 62
>gi|377837260|ref|XP_003689267.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Mus musculus]
Length = 58
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPIRCREC YRIMYKKRTKR +++
Sbjct: 21 ECHTENEIKSRDPIRCRECRYRIMYKKRTKRLVVF 55
>gi|328696808|ref|XP_003240136.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Acyrthosiphon pisum]
Length = 60
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 23 CHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
C ENE++P+DPIRCRECGYRIMYKKRTKR +++
Sbjct: 24 CQAENEMKPKDPIRCRECGYRIMYKKRTKRLVVF 57
>gi|335301191|ref|XP_003359148.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Sus scrofa]
Length = 58
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+ RDPI+CRECGYRIMYKKRTKR + +
Sbjct: 21 ECHTENEIKSRDPIQCRECGYRIMYKKRTKRWVGF 55
>gi|312089042|ref|XP_003146096.1| hypothetical protein LOAG_10524 [Loa loa]
Length = 65
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
ECH ENEIRP+D IRCRECGYRI+YKKR ++C L
Sbjct: 26 ECHSENEIRPKDAIRCRECGYRILYKKRCRKCKL 59
>gi|443922335|gb|ELU41795.1| DNA directed RNA polymerase, 7 kDa subunit domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 270
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 14 GDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
G+++ +C +NEIRPR+PIRC+ECG+RIMYKKRT R
Sbjct: 105 GEMDYLCADCGAKNEIRPREPIRCKECGHRIMYKKRTTR 143
>gi|393905779|gb|EFO17975.2| hypothetical protein LOAG_10524 [Loa loa]
Length = 63
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEIRP+D IRCRECGYRI+YKKR ++ ++Y
Sbjct: 26 ECHSENEIRPKDAIRCRECGYRILYKKRCRKLMVY 60
>gi|332017567|gb|EGI58267.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Acromyrmex echinatior]
Length = 83
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYF 57
ECH +NEIR +D RCRECGYRIMYKKRTKR + ++
Sbjct: 7 ECHHDNEIRAKDATRCRECGYRIMYKKRTKRRMFFY 42
>gi|339245221|ref|XP_003378536.1| conserved domain protein [Trichinella spiralis]
gi|316972546|gb|EFV56219.1| conserved domain protein [Trichinella spiralis]
Length = 101
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
+C F NEIR RDPIRCRECGYRI+YKKRT++ I
Sbjct: 28 DCQFPNEIRARDPIRCRECGYRILYKKRTRQGIF 61
>gi|343426011|emb|CBQ69543.1| related to RPC10-DNA-directed RNA polymerases I, II, III 7.7 KD
subunit [Sporisorium reilianum SRZ2]
Length = 71
Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 34/39 (87%), Gaps = 1/39 (2%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFKPQ 60
+C NEIRPR+PIRCRECG+R+MYKKRTKR +L+F+ +
Sbjct: 34 DCAATNEIRPREPIRCRECGHRVMYKKRTKR-MLHFEAR 71
>gi|17539996|ref|NP_501593.1| Protein RPB-12 [Caenorhabditis elegans]
gi|5596645|emb|CAB51465.1| Protein RPB-12 [Caenorhabditis elegans]
Length = 62
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+P+D IRCRECGYRI+YKKR ++ ++Y
Sbjct: 25 ECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVY 59
>gi|328770059|gb|EGF80101.1| hypothetical protein BATDEDRAFT_24859 [Batrachochytrium
dendrobatidis JAM81]
Length = 101
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
D+E EC N+I+PR+PIRC++CGYRIMYKKRTKR + +
Sbjct: 57 DVEYTCGECTALNQIKPREPIRCKDCGYRIMYKKRTKRMVQF 98
>gi|338728561|ref|XP_003365696.1| PREDICTED: hypothetical protein LOC100630853 [Equus caballus]
Length = 119
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFKPQTGGFPKLKTTV 71
ECH ENEI+ R+PIRCRE GYRIM+KKR KR +++ ++ F ++ + +
Sbjct: 61 ECHTENEIKSRNPIRCRERGYRIMHKKRIKRLVVFDACRSMEFRRVSSFI 110
>gi|291402177|ref|XP_002717412.1| PREDICTED: DNA directed RNA polymerase II polypeptide K
[Oryctolagus cuniculus]
Length = 57
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENE++ RDPIRCRECGY IMY KRTKR +++
Sbjct: 21 ECHTENEVKLRDPIRCRECGYGIMYWKRTKRSVVF 55
>gi|393245315|gb|EJD52826.1| hypothetical protein AURDEDRAFT_35539, partial [Auricularia
delicata TFB-10046 SS5]
Length = 53
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
D+E +C +NEI+PR+PIRCRECG+RIMYKKRTKR
Sbjct: 16 DMEYLCADCGAKNEIKPREPIRCRECGHRIMYKKRTKR 53
>gi|268535754|ref|XP_002633012.1| C. briggsae CBR-RPB-12 protein [Caenorhabditis briggsae]
Length = 62
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+P+D IRCRECGYRI+YKKR ++ ++Y
Sbjct: 25 ECHGENEIKPKDAIRCRECGYRILYKKRCRKLMVY 59
>gi|391337615|ref|XP_003743162.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Metaseiulus occidentalis]
Length = 64
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+CH ENE++ DPIRCRECGYRIMYK+RTKR +++
Sbjct: 27 DCHHENEMKLSDPIRCRECGYRIMYKRRTKRHMVF 61
>gi|308478078|ref|XP_003101251.1| CRE-RPB-12 protein [Caenorhabditis remanei]
gi|308263956|gb|EFP07909.1| CRE-RPB-12 protein [Caenorhabditis remanei]
Length = 62
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
ECH ENEI+P+D IRCRECGYRI+YKKR ++ ++Y
Sbjct: 25 ECHGENEIKPKDAIRCRECGYRILYKKRCRKLMVY 59
>gi|388856971|emb|CCF49391.1| related to RPC10-DNA-directed RNA polymerases I, II, III 7.7 KD
subunit [Ustilago hordei]
Length = 71
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 34/39 (87%), Gaps = 1/39 (2%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFKPQ 60
+C NEIRPR+PIRCRECG+R+MYKKRTKR +L+F+ +
Sbjct: 34 DCAASNEIRPREPIRCRECGHRVMYKKRTKR-MLHFEAR 71
>gi|390601263|gb|EIN10657.1| hypothetical protein PUNSTDRAFT_64752 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 81
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFK 58
D+E +C +NEIR R+PIRCRECG+RIMYKKRT+R +
Sbjct: 26 DMEYICADCGAKNEIRSREPIRCRECGHRIMYKKRTRRSTCFLS 69
>gi|389747040|gb|EIM88219.1| DNA-directed RNA polymerase I [Stereum hirsutum FP-91666 SS1]
Length = 67
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
D+E +C +NEI+ R+PIRCRECG+RIMYKKRTKR + +
Sbjct: 23 DMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQF 64
>gi|392568534|gb|EIW61708.1| hypothetical protein TRAVEDRAFT_27224 [Trametes versicolor
FP-101664 SS1]
Length = 68
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
D+E +C +NEIR R+PIRCRECG+RIMYKKRT R + +
Sbjct: 24 DMEYLCADCGAKNEIRSREPIRCRECGHRIMYKKRTNRMVQF 65
>gi|170091966|ref|XP_001877205.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648698|gb|EDR12941.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 65
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
D+E +C +NEI+ R+PIRCRECG+RIMYKKRTKR + +
Sbjct: 21 DMEYICADCGAKNEIKAREPIRCRECGHRIMYKKRTKRMVQF 62
>gi|336386264|gb|EGO27410.1| hypothetical protein SERLADRAFT_460779 [Serpula lacrymans var.
lacrymans S7.9]
Length = 68
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
D+E +C +NEI+ R+PIRCRECG+RIMYKKRTKR + +
Sbjct: 24 DMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQF 65
>gi|353235255|emb|CCA67271.1| hypothetical protein PIIN_01104 [Piriformospora indica DSM 11827]
Length = 72
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 20 YLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
YL C EN+IRPR+PIRC+ CG+RIMYKKRT + + +
Sbjct: 33 YLYCGVENDIRPREPIRCKACGHRIMYKKRTSKMVQF 69
>gi|395330585|gb|EJF62968.1| hypothetical protein DICSQDRAFT_103385 [Dichomitus squalens
LYAD-421 SS1]
Length = 73
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 17 EKYYL--ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
E YL +C NEIRPR+PIRCR+CG+RIMYKKRT R + +
Sbjct: 29 EMSYLCADCGASNEIRPREPIRCRQCGHRIMYKKRTTRMVQF 70
>gi|449549600|gb|EMD40565.1| hypothetical protein CERSUDRAFT_80234 [Ceriporiopsis
subvermispora B]
Length = 71
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
++E +C +NEI+ R+PIRCRECG+RIMYKKRTKR + +
Sbjct: 27 EMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQF 68
>gi|336373437|gb|EGO01775.1| hypothetical protein SERLA73DRAFT_29241 [Serpula lacrymans var.
lacrymans S7.3]
Length = 51
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCI 54
D+E +C +NEI+ R+PIRCRECG+RIMYKKRTKR +
Sbjct: 12 DMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRSM 51
>gi|307110996|gb|EFN59231.1| hypothetical protein CHLNCDRAFT_19308 [Chlorella variabilis]
Length = 62
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 14 GDIEKYYL--ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
G ++ Y+ +C EN ++P D IRCRECGYRI+YKKRTKR + Y
Sbjct: 14 GPVQVAYICGDCGAENTLKPGDVIRCRECGYRILYKKRTKRVVQY 58
>gi|384494497|gb|EIE84988.1| hypothetical protein RO3G_09698 [Rhizopus delemar RA 99-880]
gi|384497625|gb|EIE88116.1| hypothetical protein RO3G_12827 [Rhizopus delemar RA 99-880]
Length = 58
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 31/35 (88%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN+++PR+PIRC++CG+RIMYKKRTKR + +
Sbjct: 21 DCGAENQLKPREPIRCQDCGHRIMYKKRTKRMVQF 55
>gi|301776589|ref|XP_002923710.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ailuropoda melanoleuca]
gi|281347699|gb|EFB23283.1| hypothetical protein PANDA_012903 [Ailuropoda melanoleuca]
Length = 58
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+CH EN I+ RDP+RCR+C YRIMYKKR KR + +
Sbjct: 21 KCHTENFIKSRDPVRCRDCAYRIMYKKRIKRWVAF 55
>gi|393215548|gb|EJD01039.1| hypothetical protein FOMMEDRAFT_141778, partial [Fomitiporia
mediterranea MF3/22]
Length = 65
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 16 IEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
IE +C NEI+ R+PIRCRECG+RIMYKKRTKR + +
Sbjct: 22 IEYLCADCGSPNEIKSREPIRCRECGHRIMYKKRTKRMVQF 62
>gi|299471331|emb|CBN79287.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 68
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +N I+ +DPI+CR+CGYRIMYKKRTKR I +
Sbjct: 31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQF 65
>gi|256073839|ref|XP_002573235.1| hypothetical protein [Schistosoma mansoni]
gi|360044726|emb|CCD82274.1| hypothetical protein Smp_132030 [Schistosoma mansoni]
Length = 97
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC ENEIRPR+ +RC ECG+R++YKKR+KR
Sbjct: 29 ECRAENEIRPRELVRCLECGHRVLYKKRSKR 59
>gi|257205604|emb|CAX82453.1| DNA-directed RNA Polymerase II subunit K [Schistosoma japonicum]
gi|257206708|emb|CAX82982.1| DNA-directed RNA Polymerase II subunit K [Schistosoma japonicum]
Length = 66
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 29/35 (82%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC ENEIRPR+ +RC ECG+R++YKKR+KR ++
Sbjct: 29 ECRAENEIRPRELVRCLECGHRVLYKKRSKRMSVF 63
>gi|384254170|gb|EIE27644.1| hypothetical protein COCSUDRAFT_26843 [Coccomyxa subellipsoidea
C-169]
Length = 60
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D IRCRECGYRI+YKKRT+R + Y
Sbjct: 23 DCGHENTLKPGDVIRCRECGYRILYKKRTRRVVQY 57
>gi|119629192|gb|EAX08787.1| hCG2040241 [Homo sapiens]
Length = 61
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 27/30 (90%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTK 51
ECH EN+++ RDP++C ECGYRI+YKKRT+
Sbjct: 24 ECHTENDMKSRDPVKCGECGYRIIYKKRTE 53
>gi|392592901|gb|EIW82227.1| hypothetical protein CONPUDRAFT_81756 [Coniophora puteana
RWD-64-598 SS2]
Length = 64
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +NEI+ R+PIRCRECG+RIMYKKRT R + +
Sbjct: 27 DCGAKNEIKSREPIRCRECGHRIMYKKRTTRMVQF 61
>gi|302696967|ref|XP_003038162.1| hypothetical protein SCHCODRAFT_9862 [Schizophyllum commune H4-8]
gi|300111859|gb|EFJ03260.1| hypothetical protein SCHCODRAFT_9862 [Schizophyllum commune H4-8]
Length = 73
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
D+ +C E I+ R+PIRCRECG+RIMYKKRTKR + +
Sbjct: 29 DMAYLCADCGTETTIKAREPIRCRECGHRIMYKKRTKRMVQF 70
>gi|281205821|gb|EFA80010.1| RNA polymerase [Polysphondylium pallidum PN500]
Length = 46
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC ENEI+P++PI+C++C YRIMYKKRT R I +
Sbjct: 9 ECGAENEIKPKEPIKCKDCTYRIMYKKRTDRMIQF 43
>gi|116779038|gb|ABK21111.1| unknown [Picea sitchensis]
Length = 53
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 7 LVGKCLPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+ G +P + +C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 1 MDGPAVPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQY 50
>gi|116782140|gb|ABK22384.1| unknown [Picea sitchensis]
gi|116790944|gb|ABK25799.1| unknown [Picea sitchensis]
gi|148909877|gb|ABR18025.1| unknown [Picea sitchensis]
gi|224284970|gb|ACN40214.1| unknown [Picea sitchensis]
gi|224286085|gb|ACN40753.1| unknown [Picea sitchensis]
Length = 53
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 7 LVGKCLPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+ G P + +C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 1 MDGHAAPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQY 50
>gi|331215401|ref|XP_003320381.1| DNA-directed RNA Polymerase II subunit K [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309299371|gb|EFP75962.1| DNA-directed RNA Polymerase II subunit K [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 67
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 MGYSQVLVGKCLPGDIEKYY-LECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+ +Q G+ P Y +C +N I+PR+PIRC+ECG RIMYKKR KR + +
Sbjct: 8 IANAQPGFGRAAPSAPITYLCADCGKDNSIKPREPIRCQECGCRIMYKKRIKRMVQF 64
>gi|414884443|tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide
isoform 1, partial [Zea mays]
gi|414884444|tpg|DAA60458.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide
isoform 2, partial [Zea mays]
Length = 100
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 63 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQY 97
>gi|224117642|ref|XP_002317630.1| predicted protein [Populus trichocarpa]
gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Glycine max]
gi|356560019|ref|XP_003548293.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Glycine max]
gi|222860695|gb|EEE98242.1| predicted protein [Populus trichocarpa]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
Length = 51
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 14 DCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQY 48
>gi|226498516|ref|NP_001151371.1| LOC100285004 [Zea mays]
gi|297720059|ref|NP_001172391.1| Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza sativa Japonica Group]
gi|242048352|ref|XP_002461922.1| hypothetical protein SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|242078439|ref|XP_002443988.1| hypothetical protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|195609858|gb|ACG26759.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195620974|gb|ACG32317.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195645780|gb|ACG42358.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195646246|gb|ACG42591.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|218188380|gb|EEC70807.1| hypothetical protein OsI_02267 [Oryza sativa Indica Group]
gi|222618595|gb|EEE54727.1| hypothetical protein OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa Japonica Group]
gi|255676033|dbj|BAH92949.1| Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 15 DCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQY 49
>gi|356519311|ref|XP_003528316.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Glycine max]
Length = 47
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
+C EN ++P D I+CRECGYRI+YKKRT+R L
Sbjct: 14 DCGMENTLKPSDVIQCRECGYRILYKKRTRRSKL 47
>gi|297805550|ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 15 DCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQY 49
>gi|298204818|emb|CBI25651.3| unnamed protein product [Vitis vinifera]
Length = 82
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCI-----LYFKPQTG 62
+C EN ++P D I+CRECGYRI+YKKRT+R + +YF G
Sbjct: 14 DCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQRMMCIYFDTNAG 59
>gi|328870951|gb|EGG19323.1| RNA polymerase [Dictyostelium fasciculatum]
Length = 67
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC ENEI+P++PI+C++C YRIMYKKRT +
Sbjct: 9 ECGSENEIKPKEPIKCKDCTYRIMYKKRTDK 39
>gi|348684720|gb|EGZ24535.1| hypothetical protein PHYSODRAFT_284939 [Phytophthora sojae]
Length = 69
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C N + RDPIRCR CGYRIMYK RTKR I +
Sbjct: 32 DCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQF 66
>gi|328861960|gb|EGG11062.1| hypothetical protein MELLADRAFT_70939 [Melampsora larici-populina
98AG31]
Length = 67
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 9 GKCLPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
G P I +C +N I+PR+PIRC+ECG R+MYKKR KR + +
Sbjct: 17 GGPTPAPITYLCSDCGRDNIIKPREPIRCQECGCRVMYKKRIKRMVQF 64
>gi|302783643|ref|XP_002973594.1| hypothetical protein SELMODRAFT_173570 [Selaginella
moellendorffii]
gi|300158632|gb|EFJ25254.1| hypothetical protein SELMODRAFT_173570 [Selaginella
moellendorffii]
Length = 67
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +N ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 30 DCGTDNSLKPGDVIQCRECGYRILYKKRTRRIVQY 64
>gi|426198384|gb|EKV48310.1| hypothetical protein AGABI2DRAFT_191935 [Agaricus bisporus var.
bisporus H97]
Length = 74
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 15 DIEKYYLECHFENEIRPRDPIRCRECGYRIMYKK 48
D+E +C +NEI+ R+PIRCRECG+RIMYKK
Sbjct: 25 DLEYICADCGAKNEIKSREPIRCRECGHRIMYKK 58
>gi|225466239|ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Vitis vinifera]
gi|297738145|emb|CBI27346.3| unnamed protein product [Vitis vinifera]
Length = 51
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D I+CRECGYRI+YKKRT+R + Y
Sbjct: 14 DCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQY 48
>gi|218196109|gb|EEC78536.1| hypothetical protein OsI_18488 [Oryza sativa Indica Group]
Length = 87
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C EN ++P D I+CRECGYRI+YKKRT+R
Sbjct: 15 DCGAENTLKPGDVIQCRECGYRILYKKRTRR 45
>gi|168064913|ref|XP_001784402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664073|gb|EDQ50807.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 56
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +N ++P D I+CRECGYRI+YKKRT+R + +
Sbjct: 19 DCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQF 53
>gi|422295088|gb|EKU22387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Nannochloropsis gaditana CCMP526]
Length = 83
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +N I+ +DPIRCR+C +RIMYK RTKR + +
Sbjct: 46 DCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQF 80
>gi|222630231|gb|EEE62363.1| hypothetical protein OsJ_17152 [Oryza sativa Japonica Group]
Length = 50
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
+C EN ++P D I+CRECGYRI+YKKRT+R +
Sbjct: 15 DCGAENTLKPGDVIQCRECGYRILYKKRTRRSMF 48
>gi|402217522|gb|EJT97602.1| hypothetical protein DACRYDRAFT_58737 [Dacryopinax sp. DJM-731
SS1]
Length = 49
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 14 GDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
++E +C +N I PR PI+C ECG+RIMYKKRTK+
Sbjct: 7 AELEYLCADCGAKNHIVPRQPIKCMECGHRIMYKKRTKK 45
>gi|452847333|gb|EME49265.1| hypothetical protein DOTSEDRAFT_76625 [Dothistroma septosporum
NZE10]
Length = 827
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C + ++ DPIRC+ECGYR++YK+RT R
Sbjct: 797 DCDTKVALKKGDPIRCKECGYRVLYKERTNR 827
>gi|330798884|ref|XP_003287479.1| hypothetical protein DICPUDRAFT_32553 [Dictyostelium purpureum]
gi|325082498|gb|EGC35978.1| hypothetical protein DICPUDRAFT_32553 [Dictyostelium purpureum]
Length = 56
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC E+EI+P++P++C++C YRIMYKKRT +
Sbjct: 9 ECGAEHEIKPKEPVKCKDCTYRIMYKKRTDK 39
>gi|449439515|ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
Length = 51
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D I+CRECGYRI+YKKRT+R + Y
Sbjct: 14 DCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQY 48
>gi|357122946|ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D I+CRECGYRI+YKKRT+R + Y
Sbjct: 15 DCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQY 49
>gi|326530542|dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 52
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D I+CRECGYRI+YKKRT+R + Y
Sbjct: 15 DCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQY 49
>gi|302787695|ref|XP_002975617.1| hypothetical protein SELMODRAFT_103560 [Selaginella
moellendorffii]
gi|300156618|gb|EFJ23246.1| hypothetical protein SELMODRAFT_103560 [Selaginella
moellendorffii]
Length = 67
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C +N ++P D I+CRECGYRI+YKKRT+R
Sbjct: 30 DCGTDNSLKPGDVIQCRECGYRILYKKRTRR 60
>gi|195617852|gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
Length = 52
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++P D I+ RECGYRI+YKKRT+R + Y
Sbjct: 15 DCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQY 49
>gi|15237533|ref|NP_198917.1| DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana]
gi|9759147|dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana]
gi|15028303|gb|AAK76628.1| unknown protein [Arabidopsis thaliana]
gi|19310615|gb|AAL85038.1| unknown protein [Arabidopsis thaliana]
gi|21618239|gb|AAM67289.1| DNA directed RNA polymerase II polypeptide K [Arabidopsis
thaliana]
gi|332007242|gb|AED94625.1| DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana]
Length = 51
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D I+CRECGYRI+YKKRT+R + Y
Sbjct: 14 DCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQY 48
>gi|388506340|gb|AFK41236.1| unknown [Medicago truncatula]
Length = 51
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 12 LPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
LP + +C EN ++ D I+CR+CGYRI+YKKRT+R + Y
Sbjct: 4 LPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQY 48
>gi|357451245|ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula]
gi|355484947|gb|AES66150.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 12 LPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
LP + +C EN ++ D I+CR+CGYRI+YKKRT+R + Y
Sbjct: 17 LPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQY 61
>gi|414589141|tpg|DAA39712.1| TPA: hypothetical protein ZEAMMB73_184842 [Zea mays]
Length = 274
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C EN ++ D ++CRECG+RI+YKKRT+R
Sbjct: 16 DCGAENTVKLVDVVQCRECGHRILYKKRTRR 46
>gi|66810820|ref|XP_639117.1| RNA polymerase, 7 kDa subunit [Dictyostelium discoideum AX4]
gi|74854657|sp|Q54R66.1|RPAB4_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=DNA-directed RNA polymerase II
subunit K
gi|60467741|gb|EAL65759.1| RNA polymerase, 7 kDa subunit [Dictyostelium discoideum AX4]
Length = 46
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 29/35 (82%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC E+EI+P++P++C++C +RIMYKKRT + I +
Sbjct: 9 ECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQF 43
>gi|303273088|ref|XP_003055905.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461989|gb|EEH59281.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 20 YLECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+ +C E +RP D + CRECGYRI+YKKRTK+
Sbjct: 40 FADCGSEVMLRPGDIVICRECGYRILYKKRTKQ 72
>gi|213403580|ref|XP_002172562.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212000609|gb|EEB06269.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 67
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C N I+ ++ IRCRECG+R+MYK RTKR + +
Sbjct: 30 DCGAHNSIQAKEVIRCRECGHRVMYKMRTKRMVQF 64
>gi|414589140|tpg|DAA39711.1| TPA: hypothetical protein ZEAMMB73_184842 [Zea mays]
Length = 618
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C EN ++ D ++CRECG+RI+YKKRT+R
Sbjct: 16 DCGAENTVKLVDVVQCRECGHRILYKKRTRR 46
>gi|302840351|ref|XP_002951731.1| hypothetical protein VOLCADRAFT_61695 [Volvox carteri f.
nagariensis]
gi|300262979|gb|EFJ47182.1| hypothetical protein VOLCADRAFT_61695 [Volvox carteri f.
nagariensis]
Length = 58
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C E ++P D I+CRECGYRI+YKKRT + + +
Sbjct: 21 QCGSEISLKPGDIIQCRECGYRILYKKRTNKVVQF 55
>gi|320163080|gb|EFW39979.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 55
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
C NE++ RD I+C CGYRIMYK+RT+R + +
Sbjct: 18 NCRARNELKQRDAIKCTACGYRIMYKERTRRMVQF 52
>gi|159468722|ref|XP_001692523.1| subunit f DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
gi|158278236|gb|EDP04001.1| subunit f DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
Length = 58
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C E ++P D I+CRECGYRI+YKKRT + + +
Sbjct: 21 QCGSEISLKPGDIIQCRECGYRILYKKRTNKVVQF 55
>gi|255573173|ref|XP_002527516.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Ricinus communis]
gi|223533156|gb|EEF34914.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Ricinus communis]
Length = 51
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C EN ++ D I+CRECGYRI+YKKRT+R
Sbjct: 14 DCGMENTLKQGDVIQCRECGYRILYKKRTRR 44
>gi|398411540|ref|XP_003857108.1| hypothetical protein MYCGRDRAFT_78914 [Zymoseptoria tritici
IPO323]
gi|339476993|gb|EGP92084.1| hypothetical protein MYCGRDRAFT_78914 [Zymoseptoria tritici
IPO323]
Length = 88
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 19 YYL--ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+YL +C + ++ DPIRC+ECGYR++YK+RT R I +
Sbjct: 46 HYLCGDCDTKVSLKKGDPIRCKECGYRVLYKERTNRMIQF 85
>gi|145342466|ref|XP_001416203.1| RPC10 subunit of RNA polymerases I, II, and III, probable
[Ostreococcus lucimarinus CCE9901]
gi|144576428|gb|ABO94496.1| RPC10 subunit of RNA polymerases I, II, and III, probable
[Ostreococcus lucimarinus CCE9901]
Length = 56
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C E +RP D I CRECGYRI+YKKRTK+ + +
Sbjct: 19 DCGSEVLLRPGDVIICRECGYRILYKKRTKQVVQF 53
>gi|308800426|ref|XP_003074994.1| Rpc10 RPC10 subunit of RNA polymerases I, II, and III, probable
(IC) [Ostreococcus tauri]
gi|119358854|emb|CAL52265.2| Rpc10 RPC10 subunit of RNA polymerases I, II, and III, probable
(IC) [Ostreococcus tauri]
Length = 56
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C E +RP D I CRECGYRI+YKKRTK+ + +
Sbjct: 19 DCGSEVLLRPGDVIICRECGYRILYKKRTKQVVQF 53
>gi|389642813|ref|XP_003719039.1| hypothetical protein MGG_11667 [Magnaporthe oryzae 70-15]
gi|351641592|gb|EHA49455.1| hypothetical protein MGG_11667 [Magnaporthe oryzae 70-15]
gi|440462539|gb|ELQ32557.1| hypothetical protein OOU_Y34scaffold01092g7 [Magnaporthe oryzae
Y34]
gi|440490889|gb|ELQ70385.1| hypothetical protein OOW_P131scaffold00034g7 [Magnaporthe oryzae
P131]
Length = 76
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C F+ E+ RDPIRC ECG R++YK RT R I +
Sbjct: 39 DCGFKFEMNRRDPIRCTECGCRVLYKNRTNRMIEF 73
>gi|357164031|ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D I+ RECGYRI+YKKRT+R + Y
Sbjct: 15 DCGAENTLKSGDVIQSRECGYRILYKKRTRRIVQY 49
>gi|380494583|emb|CCF33043.1| DNA directed RNA polymerase [Colletotrichum higginsianum]
Length = 75
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++R DPIRC+ECG RI+YK+RTKR + +
Sbjct: 38 DCGLKFQLRRADPIRCKECGCRILYKERTKRMVQF 72
>gi|270011781|gb|EFA08229.1| hypothetical protein TcasGA2_TC005856 [Tribolium castaneum]
Length = 97
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 22 ECHFENEIRPRDPIRCREC 40
ECH ENEIRPRDPIRCREC
Sbjct: 22 ECHNENEIRPRDPIRCREC 40
>gi|19112480|ref|NP_595688.1| DNA-directed RNA polymerase I, II and III subunit Rpc10
[Schizosaccharomyces pombe 972h-]
gi|3334490|sp|P48011.2|RPAB4_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=ABC10-alpha
gi|256599726|pdb|3H0G|L Chain L, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599738|pdb|3H0G|X Chain X, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529253|dbj|BAA22807.1| RNA polymarase II subunit Rpb12 [Schizosaccharomyces pombe]
gi|2625015|gb|AAC16896.1| RNA polymerases I, II and III subunit Rpc10 [Schizosaccharomyces
pombe]
gi|5689985|emb|CAB52030.1| DNA-directed RNA polymerase I, II and III subunit Rpc10
[Schizosaccharomyces pombe]
Length = 63
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C N I+ ++ IRCRECG+R+MYK RTKR + +
Sbjct: 26 DCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQF 60
>gi|401885244|gb|EJT49367.1| hypothetical protein A1Q1_01569 [Trichosporon asahii var. asahii
CBS 2479]
gi|406694770|gb|EKC98092.1| hypothetical protein A1Q2_07638 [Trichosporon asahii var. asahii
CBS 8904]
Length = 78
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 4 SQVLVGKCLPGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
S+ L G L G +E +C + +I+ + IRCRECG+R+MYK RT + L
Sbjct: 27 SEYLCGGELQGGVEADRADCGAKTQIKMGELIRCRECGHRVMYKPRTHKSEL 78
>gi|291000242|ref|XP_002682688.1| predicted protein [Naegleria gruberi]
gi|284096316|gb|EFC49944.1| predicted protein [Naegleria gruberi]
Length = 121
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYF 57
C N I+ D IRC+ CGYRIMYK+RT R Y
Sbjct: 83 HCAVLNTIKQGDAIRCKNCGYRIMYKQRTTRSKCYL 118
>gi|413921117|gb|AFW61049.1| hypothetical protein ZEAMMB73_885271, partial [Zea mays]
Length = 45
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C EN ++P D I+CRE GYRI+YKKRT R
Sbjct: 15 DCGAENTLKPTDVIQCREWGYRILYKKRTHR 45
>gi|392862906|gb|EAS36412.2| metallothionein-I transcription activator [Coccidioides immitis RS]
Length = 230
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 193 DCSARVQMKRGDQIRCKECGHRVLYKERTKRMVQF 227
>gi|281337929|gb|EFB13513.1| hypothetical protein PANDA_019018 [Ailuropoda melanoleuca]
Length = 52
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRT 50
+CH EN+I+ R PI+CREC RI+YKK+T
Sbjct: 21 KCHTENKIKSRYPIKCRECENRIIYKKKT 49
>gi|323456568|gb|EGB12435.1| hypothetical protein AURANDRAFT_70664 [Aureococcus anophagefferens]
Length = 1556
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYK 47
+C EN I+ RD +RCR CGYRI+YK
Sbjct: 1155 DCGAENIIKARDAVRCRFCGYRILYK 1180
>gi|1050852|gb|AAA80487.1| RNA polymerase small Zn-binding subunit [Schizosaccharomyces
pombe]
gi|2529427|gb|AAC49841.1| Rpc10 [Schizosaccharomyces pombe]
Length = 63
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C N I+ ++ IRCRECG+R+MYK RTKR + +
Sbjct: 26 DCGRRNTIQAKEVIRCRECGHRVMYKMRTKRMVQF 60
>gi|453089699|gb|EMF17739.1| metallothionein-I transcription activator [Mycosphaerella
populorum SO2202]
Length = 87
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++ DPIRC+ECGYR++YK+RT R I +
Sbjct: 50 DCDTKVILKKGDPIRCKECGYRVLYKERTNRMIQF 84
>gi|226497674|ref|NP_001150838.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195642292|gb|ACG40614.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|414589139|tpg|DAA39710.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide [Zea
mays]
Length = 53
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D ++CRECG+RI+YKKRT+R + +
Sbjct: 16 DCGAENTVKLVDVVQCRECGHRILYKKRTRRIVQF 50
>gi|310800816|gb|EFQ35709.1| DNA directed RNA polymerase [Glomerella graminicola M1.001]
Length = 75
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++R DPIRC+ECG RI+YK+RTKR + +
Sbjct: 38 DCGLKFQLRRADPIRCKECGCRILYKERTKRMVQF 72
>gi|429852295|gb|ELA27438.1| metallothionein-i gene transcription activator [Colletotrichum
gloeosporioides Nara gc5]
Length = 75
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++R DPIRC+ECG RI+YK+RTKR + +
Sbjct: 38 DCGLKFQLRRADPIRCKECGCRILYKERTKRMVQF 72
>gi|328350228|emb|CCA36628.1| DNA-directed RNA Polymerase II subunit K [Komagataella pastoris
CBS 7435]
Length = 72
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 23 CHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
C + DP+RC+ECG+R++YK RTKR I +
Sbjct: 36 CAHNFSLNKSDPVRCKECGHRVIYKARTKRMIQF 69
>gi|440638547|gb|ELR08466.1| hypothetical protein GMDG_00530 [Geomyces destructans 20631-21]
Length = 77
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ DPIRC+ECG+R++YK+RTKR + +
Sbjct: 40 DCNSRVPLKRGDPIRCKECGHRVLYKERTKRMVQF 74
>gi|403217299|emb|CCK71794.1| hypothetical protein KNAG_0H03800 [Kazachstania naganishii CBS
8797]
Length = 70
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC+ECG+RI+ K RTKR + +
Sbjct: 33 ECSAKLSLSKTDPVRCKECGHRILLKTRTKRMVQF 67
>gi|294886315|ref|XP_002771664.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239875370|gb|EER03480.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 91
Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC +I+P D +RCRECG+RI+YK R K+
Sbjct: 53 ECGAYVDIKPHDAVRCRECGHRILYKLRQKQ 83
>gi|238486154|ref|XP_002374315.1| metallothionein-I gene transcription activator [Aspergillus
flavus NRRL3357]
gi|317144439|ref|XP_003189600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Aspergillus oryzae RIB40]
gi|220699194|gb|EED55533.1| metallothionein-I gene transcription activator [Aspergillus
flavus NRRL3357]
Length = 73
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 36 ECNARVSLKRGDQIRCKECGHRVLYKERTKRMVQF 70
>gi|350638254|gb|EHA26610.1| hypothetical protein ASPNIDRAFT_171344 [Aspergillus niger ATCC
1015]
Length = 120
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
EC+ ++ D IRC+ECG+R++YK+RTKR +
Sbjct: 37 ECNSRVSLKRGDQIRCKECGHRVLYKERTKRLVF 70
>gi|296424739|ref|XP_002841904.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638155|emb|CAZ86095.1| unnamed protein product [Tuber melanosporum]
Length = 76
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 19 YYL--ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+YL EC + I +PIRC+ECG+RI+YK+RT R + +
Sbjct: 34 FYLCAECGVKVGINKGEPIRCKECGHRILYKQRTTRMVQF 73
>gi|225470123|ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Vitis vinifera]
gi|298204812|emb|CBI25645.3| unnamed protein product [Vitis vinifera]
Length = 51
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C EN ++ D I+CRECGY I+YKKRT+R + Y
Sbjct: 14 DCGQENTLKLGDVIQCRECGYCILYKKRTRRIVQY 48
>gi|358367010|dbj|GAA83630.1| metallothionein-I gene transcription activator [Aspergillus
kawachii IFO 4308]
Length = 77
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 40 ECNSRVSLKRGDQIRCKECGHRVLYKERTKRMVQF 74
>gi|452987682|gb|EME87437.1| hypothetical protein MYCFIDRAFT_26394 [Pseudocercospora fijiensis
CIRAD86]
Length = 77
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 19 YYL--ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+YL +C + ++ DPIRC+ECGYR++YK+RT R
Sbjct: 42 HYLCGDCDNKVVLKKGDPIRCKECGYRVLYKERTNR 77
>gi|347837596|emb|CCD52168.1| similar to metallothionein-I gene transcription activator
[Botryotinia fuckeliana]
Length = 78
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ DPIRC+ECG+R++YK+RT R + +
Sbjct: 41 DCNASVMLKRGDPIRCKECGHRVLYKERTSRMVQF 75
>gi|85000041|ref|XP_954739.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302885|emb|CAI75263.1| hypothetical protein, conserved [Theileria annulata]
Length = 468
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR------CILYFKPQT 61
EC + ++P +RCR CG RI+YKKR+ R +LY P++
Sbjct: 21 ECGHDVALQPTSAVRCRNCGSRILYKKRSYRELKTLAEVLYSTPES 66
>gi|345570821|gb|EGX53641.1| hypothetical protein AOL_s00006g99 [Arthrobotrys oligospora ATCC
24927]
Length = 78
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + DPIRC+ECG+RI+YK+RTKR + +
Sbjct: 41 DCGKSVTLNKADPIRCKECGFRILYKERTKRMVQF 75
>gi|406862727|gb|EKD15776.1| putative transcription activator [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 76
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++ DPIRC+ECG+R++YK+RTKR + +
Sbjct: 39 DCSAKVPLKRGDPIRCKECGHRVLYKERTKRMVQF 73
>gi|145229681|ref|XP_001389149.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Aspergillus niger CBS 513.88]
gi|134055258|emb|CAK43844.1| unnamed protein product [Aspergillus niger]
Length = 74
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 37 ECNSRVSLKRGDQIRCKECGHRVLYKERTKRMVQF 71
>gi|303311223|ref|XP_003065623.1| hypothetical protein CPC735_048480 [Coccidioides posadasii C735
delta SOWgp]
gi|240105285|gb|EER23478.1| hypothetical protein CPC735_048480 [Coccidioides posadasii C735
delta SOWgp]
Length = 90
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCI 54
+C +++ D IRC+ECG+R++YK+RTKR +
Sbjct: 42 DCSARVQMKRGDQIRCKECGHRVLYKERTKRSV 74
>gi|254565403|ref|XP_002489812.1| RNA polymerase subunit, found in RNA polymerase complexes I, II,
and III [Komagataella pastoris GS115]
gi|238029608|emb|CAY67531.1| RNA polymerase subunit, found in RNA polymerase complexes I, II,
and III [Komagataella pastoris GS115]
Length = 73
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
C + DP+RC+ECG+R++YK RTKR
Sbjct: 35 ACAHNFSLNKSDPVRCKECGHRVIYKARTKR 65
>gi|302423866|ref|XP_003009763.1| metallothionein-I gene transcription activator [Verticillium
albo-atrum VaMs.102]
gi|261352909|gb|EEY15337.1| metallothionein-I gene transcription activator [Verticillium
albo-atrum VaMs.102]
Length = 81
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++R D IRC+ECG RI+YK+RTKR + +
Sbjct: 44 DCGLKFQMRRGDAIRCKECGCRILYKERTKRMVQF 78
>gi|346973185|gb|EGY16637.1| metallothionein-I transcription activator [Verticillium dahliae
VdLs.17]
Length = 81
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++R D IRC+ECG RI+YK+RTKR + +
Sbjct: 44 DCGLKFQMRRGDAIRCKECGCRILYKERTKRMVQF 78
>gi|315042740|ref|XP_003170746.1| metallothionein-I transcription activator [Arthroderma gypseum
CBS 118893]
gi|311344535|gb|EFR03738.1| metallothionein-I transcription activator [Arthroderma gypseum
CBS 118893]
Length = 76
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 39 DCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQF 73
>gi|121708186|ref|XP_001272054.1| metallothionein-I gene transcription activator [Aspergillus
clavatus NRRL 1]
gi|119400202|gb|EAW10628.1| metallothionein-I gene transcription activator [Aspergillus
clavatus NRRL 1]
Length = 76
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC+ ++ D IRC++CG+R++YK+RTKR + +
Sbjct: 39 ECNARVSLKRGDQIRCKDCGHRVLYKERTKRMVQF 73
>gi|327353757|gb|EGE82614.1| hypothetical protein BDDG_05558 [Ajellomyces dermatitidis ATCC
18188]
Length = 75
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 38 DCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQF 72
>gi|259481836|tpe|CBF75729.1| TPA: metallothionein-I gene transcription activator
(AFU_orthologue; AFUA_4G11970) [Aspergillus nidulans
FGSC A4]
Length = 75
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 7 LVGKCLPGDIEKYYL-ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
L L G I Y +C+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 22 LGAGSLDGPIVAYLCGDCNARVSLKRGDQIRCKECGHRVLYKERTKRMVQF 72
>gi|412990316|emb|CCO19634.1| predicted protein [Bathycoccus prasinos]
Length = 58
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C E +RP D + CRECGYRI++KKRTK+
Sbjct: 19 DCGSEVVLRPGDIVICRECGYRILFKKRTKQ 49
>gi|119500158|ref|XP_001266836.1| metallothionein-I gene transcription activator [Neosartorya
fischeri NRRL 181]
gi|119415001|gb|EAW24939.1| metallothionein-I gene transcription activator [Neosartorya
fischeri NRRL 181]
Length = 75
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC+ ++ D IRC++CG+R++YK+RTKR + +
Sbjct: 38 ECNARVSLKRGDQIRCKDCGHRVLYKERTKRMVQF 72
>gi|68482071|ref|XP_715053.1| hypothetical protein CaO19.7255 [Candida albicans SC5314]
gi|46436658|gb|EAK96017.1| hypothetical protein CaO19.7255 [Candida albicans SC5314]
Length = 102
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RTKR + +
Sbjct: 65 QCAASFSLSKSDTIRCKECGHRVIYKARTKRMVQF 99
>gi|444315586|ref|XP_004178450.1| hypothetical protein TBLA_0B00880 [Tetrapisispora blattae CBS
6284]
gi|387511490|emb|CCH58931.1| hypothetical protein TBLA_0B00880 [Tetrapisispora blattae CBS
6284]
Length = 70
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSKTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|295669478|ref|XP_002795287.1| metallothionein-I gene transcription activator [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226285221|gb|EEH40787.1| metallothionein-I gene transcription activator [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 75
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 38 DCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQF 72
>gi|225682721|gb|EEH21005.1| hypothetical protein PABG_03236 [Paracoccidioides brasiliensis
Pb03]
Length = 75
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 38 DCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQF 72
>gi|225559787|gb|EEH08069.1| metallothionein-I gene transcription activator [Ajellomyces
capsulatus G186AR]
gi|240276339|gb|EER39851.1| metallothionein-I gene transcription activator [Ajellomyces
capsulatus H143]
gi|325089802|gb|EGC43112.1| metallothionein-I gene transcription activator [Ajellomyces
capsulatus H88]
Length = 75
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 38 DCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQF 72
>gi|320039447|gb|EFW21381.1| metallothionein-I transcription activator [Coccidioides posadasii
str. Silveira]
Length = 79
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C +++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 42 DCSARVQMKRGDQIRCKECGHRVLYKERTKRMVQF 76
>gi|154287308|ref|XP_001544449.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408090|gb|EDN03631.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 75
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C+ ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 38 DCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQF 72
>gi|298204819|emb|CBI25652.3| unnamed protein product [Vitis vinifera]
Length = 40
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKK 48
+C EN ++P D I+CRECGYRI+YKK
Sbjct: 14 DCGQENTLKPGDVIQCRECGYRILYKK 40
>gi|154318325|ref|XP_001558481.1| predicted protein [Botryotinia fuckeliana B05.10]
Length = 106
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C+ ++ DPIRC+ECG+R++YK+RT R
Sbjct: 41 DCNASVMLKRGDPIRCKECGHRVLYKERTSR 71
>gi|238878190|gb|EEQ41828.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 73
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RTKR + +
Sbjct: 36 QCAASFSLSKSDTIRCKECGHRVIYKARTKRMVQF 70
>gi|366992454|ref|XP_003675992.1| hypothetical protein NCAS_0D00470 [Naumovozyma castellii CBS
4309]
gi|342301858|emb|CCC69628.1| hypothetical protein NCAS_0D00470 [Naumovozyma castellii CBS
4309]
Length = 70
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|358059807|dbj|GAA94453.1| hypothetical protein E5Q_01105 [Mixia osmundae IAM 14324]
Length = 136
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C +N I P+ PIRC CG RI++KKR K+
Sbjct: 33 DCGQDNNIEPKAPIRCNHCGCRIVFKKRGKK 63
>gi|241950503|ref|XP_002417974.1| DNA-directed RNA polymerases I, II, and III minisubunit, putative
[Candida dubliniensis CD36]
gi|223641312|emb|CAX45693.1| DNA-directed RNA polymerases I, II, and III minisubunit, putative
[Candida dubliniensis CD36]
Length = 73
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RTKR + +
Sbjct: 36 QCAASFSLSKSDTIRCKECGHRVIYKARTKRMVQF 70
>gi|367002812|ref|XP_003686140.1| hypothetical protein TPHA_0F02250 [Tetrapisispora phaffii CBS
4417]
gi|357524440|emb|CCE63706.1| hypothetical protein TPHA_0F02250 [Tetrapisispora phaffii CBS
4417]
Length = 70
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|365989908|ref|XP_003671784.1| hypothetical protein NDAI_0H03680 [Naumovozyma dairenensis CBS
421]
gi|410080394|ref|XP_003957777.1| hypothetical protein KAFR_0F00450 [Kazachstania africana CBS
2517]
gi|343770557|emb|CCD26541.1| hypothetical protein NDAI_0H03680 [Naumovozyma dairenensis CBS
421]
gi|372464364|emb|CCF58642.1| hypothetical protein KAFR_0F00450 [Kazachstania africana CBS
2517]
Length = 70
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|254585295|ref|XP_002498215.1| ZYRO0G05038p [Zygosaccharomyces rouxii]
gi|238941109|emb|CAR29282.1| ZYRO0G05038p [Zygosaccharomyces rouxii]
Length = 70
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|296807981|ref|XP_002844329.1| metallothionein-I gene transcription activator [Arthroderma otae
CBS 113480]
gi|238843812|gb|EEQ33474.1| metallothionein-I gene transcription activator [Arthroderma otae
CBS 113480]
Length = 76
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 39 DCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQF 73
>gi|189189346|ref|XP_001931012.1| hypothetical protein PTRG_00679 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972618|gb|EDU40117.1| hypothetical protein PTRG_00679 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 72
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++ +PIRCR CG+R++YK+RT R + +
Sbjct: 35 DCDMDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQF 69
>gi|326475683|gb|EGD99692.1| metallothionein-I transcription activator [Trichophyton tonsurans
CBS 112818]
gi|326484604|gb|EGE08614.1| metallothionein-I transcription activator [Trichophyton equinum
CBS 127.97]
Length = 76
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 39 DCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQF 73
>gi|327295542|ref|XP_003232466.1| metallothionein-I transcription activator [Trichophyton rubrum
CBS 118892]
gi|326465638|gb|EGD91091.1| metallothionein-I transcription activator [Trichophyton rubrum
CBS 118892]
Length = 76
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C ++ D IRC+ECG+R++YK+RTKR + +
Sbjct: 39 DCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQF 73
>gi|344302315|gb|EGW32620.1| DNA-directed RNA polymerases I [Spathaspora passalidarum NRRL
Y-27907]
Length = 73
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCAASFSLSKNDAIRCKECGHRVIYKSRTRRMVQF 70
>gi|405120024|gb|AFR94795.1| hypothetical protein CNAG_07424 [Cryptococcus neoformans var.
grubii H99]
Length = 103
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
+C + ++P + IRC+ECG+R+MYK RT R +
Sbjct: 33 DCGAQTAMQPSEFIRCKECGHRVMYKPRTTRSAI 66
>gi|169612337|ref|XP_001799586.1| hypothetical protein SNOG_09289 [Phaeosphaeria nodorum SN15]
gi|111062361|gb|EAT83481.1| hypothetical protein SNOG_09289 [Phaeosphaeria nodorum SN15]
Length = 290
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 29 IRPRDPIRCRECGYRIMYKKRTKRCILY 56
I+ +PIRC+ECG+R +YK+RT R + +
Sbjct: 260 IKQGEPIRCKECGFRSVYKRRTNRMVQF 287
>gi|156053117|ref|XP_001592485.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154704504|gb|EDO04243.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 99
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTK 51
+C+ ++ DPIRC+ECG+R++YK+RT
Sbjct: 41 DCNASVMLKRGDPIRCKECGHRVLYKERTS 70
>gi|451999361|gb|EMD91824.1| hypothetical protein COCHEDRAFT_1214224 [Cochliobolus
heterostrophus C5]
Length = 68
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++ +PIRCR CG+R++YK+RT R + +
Sbjct: 31 DCDMDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQF 65
>gi|367015196|ref|XP_003682097.1| hypothetical protein TDEL_0F00750 [Torulaspora delbrueckii]
gi|359749759|emb|CCE92886.1| hypothetical protein TDEL_0F00750 [Torulaspora delbrueckii]
Length = 70
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC+ CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKNCGHRILLKARTKRMVQF 67
>gi|126274679|ref|XP_001387619.1| DNA-directed RNA polymerases small subunit [Scheffersomyces
stipitis CBS 6054]
gi|126213489|gb|EAZ63596.1| DNA-directed RNA polymerases small subunit [Scheffersomyces
stipitis CBS 6054]
Length = 72
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 35 QCAASFSLSKNDAIRCKECGHRVIYKARTRRMVQF 69
>gi|156841739|ref|XP_001644241.1| hypothetical protein Kpol_1051p32 [Vanderwaltozyma polyspora DSM
70294]
gi|156114879|gb|EDO16383.1| hypothetical protein Kpol_1051p32 [Vanderwaltozyma polyspora DSM
70294]
Length = 70
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|330936159|ref|XP_003305267.1| hypothetical protein PTT_18070 [Pyrenophora teres f. teres 0-1]
gi|311317773|gb|EFQ86642.1| hypothetical protein PTT_18070 [Pyrenophora teres f. teres 0-1]
Length = 72
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++ +PIRCR CG+R++YK+RT R + +
Sbjct: 35 DCDMDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQF 69
>gi|50288377|ref|XP_446617.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525925|emb|CAG59544.1| unnamed protein product [Candida glabrata]
Length = 70
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RT+R + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTRRMVQF 67
>gi|448097041|ref|XP_004198574.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
gi|448111073|ref|XP_004201752.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
gi|359379996|emb|CCE82237.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
gi|359464741|emb|CCE88446.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
Length = 73
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCAASFTLSKSDAIRCKECGHRVIYKARTRRMVQF 70
>gi|255711588|ref|XP_002552077.1| KLTH0B06622p [Lachancea thermotolerans]
gi|238933455|emb|CAR21639.1| KLTH0B06622p [Lachancea thermotolerans CBS 6340]
Length = 70
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQF 67
>gi|212542393|ref|XP_002151351.1| metallothionein-I gene transcription activator [Talaromyces
marneffei ATCC 18224]
gi|210066258|gb|EEA20351.1| metallothionein-I gene transcription activator [Talaromyces
marneffei ATCC 18224]
Length = 82
Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + P +RC ECG+RI+YK+RTKR + +
Sbjct: 45 ECDAKFSLPPNATLRCTECGHRILYKERTKRIVQF 79
>gi|261191827|ref|XP_002622321.1| metallothionein-I gene transcription activator [Ajellomyces
dermatitidis SLH14081]
gi|239589637|gb|EEQ72280.1| metallothionein-I gene transcription activator [Ajellomyces
dermatitidis SLH14081]
gi|239608621|gb|EEQ85608.1| metallothionein-I gene transcription activator [Ajellomyces
dermatitidis ER-3]
Length = 78
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFK 58
+C+ ++ D IRC+ECG+R++YK+RTK + K
Sbjct: 38 DCNSRVSMKRGDQIRCKECGHRVLYKERTKSFLQALK 74
>gi|149239678|ref|XP_001525715.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451208|gb|EDK45464.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 73
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCAASFSLGKNDAIRCKECGHRVIYKARTRRMVQF 70
>gi|255728983|ref|XP_002549417.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240133733|gb|EER33289.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 73
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCGASFALSKSDAIRCKECGHRVIYKARTRRMVQF 70
>gi|448534956|ref|XP_003870870.1| Rpc10 RNA polymerase subunit ABC10-alpha of RNA polymerase
complexes I, II, and III [Candida orthopsilosis Co
90-125]
gi|354548300|emb|CCE45036.1| hypothetical protein CPAR2_700400 [Candida parapsilosis]
gi|380355226|emb|CCG24742.1| Rpc10 RNA polymerase subunit ABC10-alpha of RNA polymerase
complexes I, II, and III [Candida orthopsilosis]
Length = 73
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCAASFSLGKNDAIRCKECGHRVIYKARTRRMVQF 70
>gi|428671116|gb|EKX72035.1| DNA-directed RNA polymerases I, II, and III 7.7 kD polypeptide,
putative [Babesia equi]
Length = 56
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + ++P +RCR CG RI+YKKR+ R + Y
Sbjct: 19 ECGNDIALQPTAAVRCRNCGSRILYKKRSYRVVQY 53
>gi|451847986|gb|EMD61292.1| hypothetical protein COCSADRAFT_96768 [Cochliobolus sativus
ND90Pr]
Length = 61
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C + ++ +PIRCR CG+R++YK+RT R
Sbjct: 31 DCDMDVPLKRGEPIRCRNCGHRVLYKQRTNR 61
>gi|146414127|ref|XP_001483034.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146392733|gb|EDK40891.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 73
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCATSFSLGKSDAIRCKECGHRVIYKSRTRRMVQF 70
>gi|50420273|ref|XP_458669.1| DEHA2D04664p [Debaryomyces hansenii CBS767]
gi|49654336|emb|CAG86808.1| DEHA2D04664p [Debaryomyces hansenii CBS767]
Length = 73
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCATSFSLGKSDAIRCKECGHRVIYKARTRRMVQF 70
>gi|344230714|gb|EGV62599.1| hypothetical protein CANTEDRAFT_115112 [Candida tenuis ATCC
10573]
gi|344230715|gb|EGV62600.1| hypothetical protein CANTEDRAFT_115112 [Candida tenuis ATCC
10573]
Length = 73
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 18 KYY-LECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
KYY +C + D IRC++CG+R++YK RT++ + +
Sbjct: 31 KYYCAQCGSSFSLNKSDAIRCKDCGHRVIYKARTRKMVQF 70
>gi|260943149|ref|XP_002615873.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851163|gb|EEQ40627.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 73
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + D IRC+ECG+R++YK RT+R + +
Sbjct: 36 QCGASFSLGKSDAIRCKECGHRVIYKARTRRMVQF 70
>gi|363754767|ref|XP_003647599.1| hypothetical protein Ecym_6409 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891236|gb|AET40782.1| hypothetical protein Ecym_6409 [Eremothecium cymbalariae
DBVPG#7215]
Length = 70
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC+ CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDPVRCKNCGHRILLKARTKRMVQF 67
>gi|50306889|ref|XP_453420.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642554|emb|CAH00516.1| KLLA0D08008p [Kluyveromyces lactis]
Length = 70
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + DP+RC+ CG+RI+ K RTKR + +
Sbjct: 33 ECSSRLSLSRTDPVRCKNCGHRILLKARTKRMVQF 67
>gi|6321937|ref|NP_012013.1| Rpc10p [Saccharomyces cerevisiae S288c]
gi|730606|sp|P40422.1|RPAB4_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=ABC10-alpha
gi|14278333|pdb|1I3Q|L Chain L, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278344|pdb|1I50|L Chain L, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278374|pdb|1I6H|L Chain L, Rna Polymerase Ii Elongation Complex
gi|20150722|pdb|1K83|L Chain L, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749627|pdb|1NIK|L Chain L, Wild Type Rna Polymerase Ii
gi|30749748|pdb|1NT9|L Chain L, Complete 12-Subunit Rna Polymerase Ii
gi|34810564|pdb|1PQV|L Chain L, Rna Polymerase Ii-Tfiis Complex
gi|46015424|pdb|1R5U|L Chain L, Rna Polymerase Ii Tfiib Complex
gi|46015789|pdb|1SFO|L Chain L, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965920|pdb|1R9S|L Chain L, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965932|pdb|1R9T|L Chain L, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966116|pdb|1TWA|L Chain L, Rna Polymerase Ii Complexed With Atp
gi|56966130|pdb|1TWC|L Chain L, Rna Polymerase Ii Complexed With Gtp
gi|56966140|pdb|1TWF|L Chain L, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966150|pdb|1TWG|L Chain L, Rna Polymerase Ii Complexed With Ctp
gi|56966160|pdb|1TWH|L Chain L, Rna Polymerase Ii Complexed With 2'datp
gi|58177175|pdb|1WCM|L Chain L, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679455|pdb|1Y1W|L Chain L, Complete Rna Polymerase Ii Elongation Complex
gi|61679472|pdb|1Y77|L Chain L, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679513|pdb|1Y1V|L Chain L, Refined Rna Polymerase Ii-tfiis Complex
gi|61679526|pdb|1Y1Y|L Chain L, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754254|pdb|2B63|L Chain L, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590865|pdb|2B8K|L Chain L, 12-Subunit Rna Polymerase Ii
gi|122920070|pdb|2E2H|L Chain L, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With
Gtp
gi|122920085|pdb|2E2I|L Chain L, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dgtp
gi|122920100|pdb|2E2J|L Chain L, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921039|pdb|2NVQ|L Chain L, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921075|pdb|2NVT|L Chain L, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921091|pdb|2NVX|L Chain L, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dutp
gi|122921106|pdb|2NVY|L Chain L, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921118|pdb|2NVZ|L Chain L, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104685|pdb|2JA5|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex A
gi|134104700|pdb|2JA6|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex B
gi|134104721|pdb|2JA7|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104733|pdb|2JA7|X Chain X, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104745|pdb|2JA8|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex D
gi|146387193|pdb|2YU9|L Chain L, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877784|pdb|2R7Z|L Chain L, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172238|pdb|2R92|L Chain L, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172251|pdb|2R93|L Chain L, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|194368743|pdb|3CQZ|L Chain L, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|218766963|pdb|2VUM|L Chain L, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983601|pdb|3FKI|L Chain L, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781925|pdb|3GTG|L Chain L, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781938|pdb|3GTJ|L Chain L, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781951|pdb|3GTK|L Chain L, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781964|pdb|3GTL|L Chain L, Backtracked Rna Polymerase Ii Complex With 13mer With
G<>u Mismatch
gi|239781977|pdb|3GTM|L Chain L, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781991|pdb|3GTO|L Chain L, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782004|pdb|3GTP|L Chain L, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782017|pdb|3GTQ|L Chain L, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104522|pdb|3H3V|M Chain M, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839452|pdb|3HOU|L Chain L, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839467|pdb|3HOU|X Chain X, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839482|pdb|3HOV|L Chain L, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839497|pdb|3HOW|L Chain L, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839512|pdb|3HOX|L Chain L, Complete Rna Polymerase Ii Elongation Complex V
gi|254839527|pdb|3HOY|L Chain L, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839542|pdb|3HOZ|L Chain L, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471957|pdb|3I4M|L Chain L, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471972|pdb|3I4N|L Chain L, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618776|pdb|3K1F|L Chain L, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914561|pdb|3K7A|L Chain L, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982484|pdb|3M3Y|L Chain L, Rna Polymerase Ii Elongation Complex C
gi|295982497|pdb|3M4O|L Chain L, Rna Polymerase Ii Elongation Complex B
gi|325053974|pdb|3PO2|L Chain L, Arrested Rna Polymerase Ii Elongation Complex
gi|325053989|pdb|3PO3|L Chain L, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634549|pdb|3QT1|L Chain L, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197465|pdb|3RZD|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197477|pdb|3RZO|L Chain L, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197489|pdb|3S14|L Chain L, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197501|pdb|3S15|L Chain L, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197513|pdb|3S16|L Chain L, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197525|pdb|3S17|L Chain L, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197537|pdb|3S1M|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197549|pdb|3S1N|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197561|pdb|3S1Q|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Atp
gi|343197573|pdb|3S1R|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Gtp
gi|343197585|pdb|3S2D|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781206|pdb|3S2H|L Chain L, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380847|pdb|4A3C|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid
gi|359546301|pdb|4A3B|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid
gi|359546319|pdb|4A3D|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid
gi|359546336|pdb|4A3E|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546353|pdb|4A3F|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546370|pdb|4A3J|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546387|pdb|4A3K|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid
gi|359546403|pdb|4A3L|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546420|pdb|4A3M|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977890|pdb|4A3G|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid
gi|374977905|pdb|4A3I|L Chain L, Rna Polymerase Ii Binary Complex With Dna
gi|380764990|pdb|4A93|L Chain L, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145457|pdb|4BBR|L Chain L, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145470|pdb|4BBS|L Chain L, Structure Of An Initially Transcribing Rna Polymerase
Ii- Tfiib Complex
gi|733518|gb|AAA64417.1| RNA polymerase I, II and III subunit ABC10 alpha [Saccharomyces
cerevisiae]
gi|2358017|gb|AAB68994.1| Rpb12p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|45270988|gb|AAS56875.1| YHR143W-A [Saccharomyces cerevisiae]
gi|190405922|gb|EDV09189.1| RNA polymerase II subunit [Saccharomyces cerevisiae RM11-1a]
gi|256269016|gb|EEU04357.1| Rpc10p [Saccharomyces cerevisiae JAY291]
gi|259146901|emb|CAY80157.1| Rpc10p [Saccharomyces cerevisiae EC1118]
gi|285810050|tpg|DAA06837.1| TPA: Rpc10p [Saccharomyces cerevisiae S288c]
gi|349578695|dbj|GAA23860.1| K7_Rpc10p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298952|gb|EIW10047.1| Rpc10p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|401625368|gb|EJS43378.1| rpc10p [Saccharomyces arboricola H-6]
gi|401841805|gb|EJT44134.1| RPC10-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 70
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + D +RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQF 67
>gi|167522132|ref|XP_001745404.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776362|gb|EDQ89982.1| predicted protein [Monosiga brevicollis MX1]
Length = 101
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC N+I+ I CR CG+RI+YK RT+R
Sbjct: 29 ECRNPNQIKAGGDINCRNCGHRILYKLRTER 59
>gi|70993574|ref|XP_751634.1| metallothionein-I gene transcription activator [Aspergillus
fumigatus Af293]
gi|66849268|gb|EAL89596.1| metallothionein-I gene transcription activator [Aspergillus
fumigatus Af293]
gi|159125442|gb|EDP50559.1| metallothionein-I gene transcription activator [Aspergillus
fumigatus A1163]
Length = 76
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTK 51
EC+ ++ D IRC++CG+R++YK+RTK
Sbjct: 38 ECNARVSLKRGDQIRCKDCGHRVLYKERTK 67
>gi|401398804|ref|XP_003880407.1| unnamed protein product [Neospora caninum Liverpool]
gi|325114817|emb|CBZ50373.1| unnamed protein product [Neospora caninum Liverpool]
Length = 69
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + ++P +RCR CG RI+YKKR+++ + Y
Sbjct: 32 ECGCDVMLQPNAAVRCRSCGSRILYKKRSRKMMQY 66
>gi|151944090|gb|EDN62383.1| ABC10-alpha [Saccharomyces cerevisiae YJM789]
Length = 70
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + D +RC++CG+RI+ K RTKR + +
Sbjct: 33 ECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQF 67
>gi|396463242|ref|XP_003836232.1| hypothetical protein LEMA_P055730.1 [Leptosphaeria maculans JN3]
gi|312212784|emb|CBX92867.1| hypothetical protein LEMA_P055730.1 [Leptosphaeria maculans JN3]
Length = 70
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + ++ +PIRCR CG+R++YK+RT R + +
Sbjct: 33 DCDQDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQF 67
>gi|45198544|ref|NP_985573.1| AFR026Cp [Ashbya gossypii ATCC 10895]
gi|44984495|gb|AAS53397.1| AFR026Cp [Ashbya gossypii ATCC 10895]
gi|374108802|gb|AEY97708.1| FAFR026Cp [Ashbya gossypii FDAG1]
Length = 70
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + DP+RC+ CG+RI+ K RTKR + +
Sbjct: 33 ECSGKLSLSRTDPVRCKNCGHRILLKARTKRMVQF 67
>gi|71026783|ref|XP_763035.1| transcription activator [Theileria parva strain Muguga]
gi|68349988|gb|EAN30752.1| transcription activator, putative [Theileria parva]
Length = 58
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCI 54
EC + ++P +RCR CG RI+YKKR+ R I
Sbjct: 21 ECGHDVSLQPSSVVRCRNCGSRILYKKRSYRGI 53
>gi|425766146|gb|EKV04772.1| Hypothetical protein PDIP_86130 [Penicillium digitatum Pd1]
gi|425774548|gb|EKV12851.1| Metallothionein-I transcription activator [Penicillium digitatum
PHI26]
Length = 71
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC ++ D IRC++CG+R++YK+RTKR
Sbjct: 41 ECSARVPLKRGDQIRCKDCGHRVLYKERTKR 71
>gi|255947560|ref|XP_002564547.1| Pc22g05120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591564|emb|CAP97800.1| Pc22g05120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 70
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC ++ D IRC++CG+R++YK+RTKR
Sbjct: 40 ECSARVPLKRGDQIRCKDCGHRVLYKERTKR 70
>gi|407926564|gb|EKG19531.1| RNA polymerase Rbp10 [Macrophomina phaseolina MS6]
Length = 74
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + +R D I CRECG+R++YK+RT R + +
Sbjct: 37 DCDAKVVLRRGDQIMCRECGHRVLYKERTNRMVQF 71
>gi|378729408|gb|EHY55867.1| DNA-directed RNA Polymerase II subunit K [Exophiala dermatitidis
NIH/UT8656]
Length = 78
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + D IRC CG+R++YK+RTKR + +
Sbjct: 41 ECAAKVSLGRGDAIRCSMCGHRVLYKERTKRMVQF 75
>gi|237840341|ref|XP_002369468.1| transcription activator, putative [Toxoplasma gondii ME49]
gi|211967132|gb|EEB02328.1| transcription activator, putative [Toxoplasma gondii ME49]
Length = 104
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + ++P +RCR CG RI+YKKR+++ + Y
Sbjct: 67 ECGCDVMLQPNAAVRCRSCGSRILYKKRSRKMMQY 101
>gi|169608305|ref|XP_001797572.1| hypothetical protein SNOG_07223 [Phaeosphaeria nodorum SN15]
gi|160701616|gb|EAT85874.2| hypothetical protein SNOG_07223 [Phaeosphaeria nodorum SN15]
Length = 60
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
+C + ++ +PIRCR CG+R++YK+RT R
Sbjct: 30 DCDQDVPLKRGEPIRCRNCGHRVLYKQRTNR 60
>gi|221483155|gb|EEE21479.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Toxoplasma gondii GT1]
gi|221504088|gb|EEE29765.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Toxoplasma gondii VEG]
Length = 104
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + ++P +RCR CG RI+YKKR+++ + Y
Sbjct: 67 ECGCDVMLQPNAAVRCRSCGSRILYKKRSRKMMQY 101
>gi|353251644|pdb|3J0K|L Chain L, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 46
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + D +RC++CG+RI+ K RTKR + +
Sbjct: 9 ECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQF 43
>gi|392512878|emb|CCI73989.1| ECU10_1045 [Encephalitozoon cuniculi GB-M1]
Length = 51
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 21 LECHFENEIRPRDPIRCRECGYRIMYKKRTKRCI 54
++C E++ +DPIRC ECG R++ KKRT +
Sbjct: 13 IQCPSLRELKLKDPIRCTECGNRVLRKKRTDEVV 46
>gi|294947882|ref|XP_002785507.1| Voltage-dependent anion-selective channel, putative [Perkinsus
marinus ATCC 50983]
gi|239899486|gb|EER17303.1| Voltage-dependent anion-selective channel, putative [Perkinsus
marinus ATCC 50983]
Length = 403
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 10 KCLPGDIEKYYLECHFENEIR-PRDPIRCRECGYRIMYKKRTKR 52
+ LP + C E E++ D I+C CG+RI+YKKR +R
Sbjct: 25 QSLPNQVLYVCGNCGNEQELKLMADAIKCNRCGHRILYKKRQRR 68
>gi|294898939|ref|XP_002776430.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239883409|gb|EER08246.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 68
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 12 LPGDIEKYYLECHFENEIR-PRDPIRCRECGYRIMYKKRTKRCILY 56
LP + C E E++ D I+C CG+RI+YKKR +R +++
Sbjct: 20 LPNQVLYVCGNCGNEQELKLMADAIKCNRCGHRILYKKRQRRVMIF 65
>gi|221058565|ref|XP_002259928.1| transcription activator [Plasmodium knowlesi strain H]
gi|193810001|emb|CAQ41195.1| transcription activator, putative [Plasmodium knowlesi strain H]
Length = 58
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + I P +RC+ CG +I +KKR++R + Y
Sbjct: 21 ECGIDTVIAPNASLRCKNCGSKIFFKKRSRRVMQY 55
>gi|85082466|ref|XP_956919.1| hypothetical protein NCU04508 [Neurospora crassa OR74A]
gi|336270882|ref|XP_003350200.1| hypothetical protein SMAC_01092 [Sordaria macrospora k-hell]
gi|28918000|gb|EAA27683.1| predicted protein [Neurospora crassa OR74A]
gi|336471123|gb|EGO59284.1| hypothetical protein NEUTE1DRAFT_99462 [Neurospora tetrasperma
FGSC 2508]
gi|350292210|gb|EGZ73405.1| hypothetical protein NEUTE2DRAFT_127761 [Neurospora tetrasperma
FGSC 2509]
gi|380095595|emb|CCC07068.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 75
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 34 PIRCRECGYRIMYKKRTKRCILY 56
PIRC++CG R++YK+RTKR + +
Sbjct: 50 PIRCQKCGARVLYKERTKRMVQF 72
>gi|210075559|ref|XP_502037.2| YALI0C20075p [Yarrowia lipolytica]
gi|199425307|emb|CAG82357.2| YALI0C20075p [Yarrowia lipolytica CLIB122]
Length = 73
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 33 DPIRCRECGYRIMYKKRTK 51
DP+RC+ECG+R++YK+R
Sbjct: 47 DPVRCKECGHRVLYKERAN 65
>gi|389584911|dbj|GAB67642.1| transcription activator [Plasmodium cynomolgi strain B]
Length = 58
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + I P +RC+ CG +I +KKR++R + Y
Sbjct: 21 ECGIDTVIAPNASLRCKNCGSKIFFKKRSRRVMQY 55
>gi|403223468|dbj|BAM41599.1| putative RPC10 subunit of RNA polymerases I, II, and III
[Theileria orientalis strain Shintoku]
Length = 364
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
EC + ++ +RCR CG RI+YKKR+ R
Sbjct: 20 ECGNDVALQSTAAVRCRNCGSRILYKKRSYR 50
>gi|297725305|ref|NP_001175016.1| Os07g0105100 [Oryza sativa Japonica Group]
gi|22324456|dbj|BAC10371.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50508985|dbj|BAD31934.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510148|dbj|BAD31116.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255677442|dbj|BAH93744.1| Os07g0105100 [Oryza sativa Japonica Group]
Length = 65
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 13 PGDIEKYYLECHFENEIRPRDPIRCRECGYRIMYKKRTKRCIL 55
P + +C E ++P D ++C ECG RI+ KKRT++ I+
Sbjct: 16 PKPVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQGIV 58
>gi|340960544|gb|EGS21725.1| hypothetical protein CTHT_0035920 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 80
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
+C + PIRC++CG R++YK+RTKR + +
Sbjct: 43 DCAVRVPLEKGAPIRCQKCGARVLYKERTKRMVQF 77
>gi|430812217|emb|CCJ30370.1| unnamed protein product [Pneumocystis jirovecii]
Length = 61
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 16 IEKYYL--ECHFENEIRPRDPIRCRECGYRIMYKK 48
++ YL +C N+I+ R+ IRCRECG+R++ +K
Sbjct: 26 VQMSYLCADCGAVNQIQAREVIRCRECGHRVIIQK 60
>gi|330913451|ref|XP_003296286.1| hypothetical protein PTT_05784 [Pyrenophora teres f. teres 0-1]
gi|311331700|gb|EFQ95619.1| hypothetical protein PTT_05784 [Pyrenophora teres f. teres 0-1]
Length = 238
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 33 DPIRCRECGYRIMYKKRTKRCILY 56
+ +RCR+CG RI+ KKRT+R + +
Sbjct: 212 ETLRCRDCGCRILLKKRTRRAVQF 235
>gi|367044838|ref|XP_003652799.1| hypothetical protein THITE_2114571 [Thielavia terrestris NRRL
8126]
gi|347000061|gb|AEO66463.1| hypothetical protein THITE_2114571 [Thielavia terrestris NRRL
8126]
Length = 79
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 19 YYL--ECHFENEIRPRDPIRCRECGYRIMYKKRTKR 52
YYL +C + PIRC++CG R++YK+RTKR
Sbjct: 44 YYLCGDCAVRVPLEKGAPIRCQKCGARVLYKERTKR 79
>gi|242768787|ref|XP_002341640.1| metallothionein-I gene transcription activator [Talaromyces
stipitatus ATCC 10500]
gi|218724836|gb|EED24253.1| metallothionein-I gene transcription activator [Talaromyces
stipitatus ATCC 10500]
Length = 80
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + + +RC ECG+RI+YK+RTKR + +
Sbjct: 43 ECDAKFSLPHNATLRCTECGHRILYKERTKRIVQF 77
>gi|15220906|ref|NP_175773.1| DNA directed RNA polymerase-7 subunit [Arabidopsis thaliana]
gi|12324038|gb|AAG51987.1|AC024260_25 RNA polymerase II, putative; 28841-29486 [Arabidopsis thaliana]
gi|332194861|gb|AEE32982.1| DNA directed RNA polymerase-7 subunit [Arabidopsis thaliana]
Length = 61
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKR 49
+C EN ++ D +CR+CG+RI+YKKR
Sbjct: 23 DCGQENILKRGDVFQCRDCGFRILYKKR 50
>gi|402083731|gb|EJT78749.1| hypothetical protein GGTG_03847 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 85
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 28 EIRPRDPIRCRECGYRIMYKKRTKRCILY 56
E++ D IRC ECG R++YK RT R I +
Sbjct: 54 ELKRADAIRCTECGCRVLYKNRTNRMIEF 82
>gi|396495824|ref|XP_003844639.1| hypothetical protein LEMA_uP022900.1 [Leptosphaeria maculans JN3]
gi|312221219|emb|CBY01160.1| hypothetical protein LEMA_uP022900.1 [Leptosphaeria maculans JN3]
Length = 57
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 33 DPIRCRECGYRIMYKKRTKRCILY 56
D +RCRECG R M+KKRT+R + +
Sbjct: 31 DAMRCRECGCRAMWKKRTERMVQF 54
>gi|124513584|ref|XP_001350148.1| transcription activator, putative [Plasmodium falciparum 3D7]
gi|23615565|emb|CAD52557.1| transcription activator, putative [Plasmodium falciparum 3D7]
Length = 58
Score = 35.0 bits (79), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + I P +RC+ CG +I +KKR++R + Y
Sbjct: 21 ECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQY 55
>gi|68076071|ref|XP_679955.1| transcription activator [Plasmodium berghei strain ANKA]
gi|56500811|emb|CAH95077.1| transcription activator, putative [Plasmodium berghei]
Length = 58
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + I P +RC+ CG +I +KKR++R + Y
Sbjct: 21 ECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQY 55
>gi|70952587|ref|XP_745452.1| transcription activator [Plasmodium chabaudi chabaudi]
gi|56525778|emb|CAH78586.1| transcription activator, putative [Plasmodium chabaudi chabaudi]
Length = 58
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC + I P +RC+ CG +I +KKR++R + Y
Sbjct: 21 ECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQY 55
>gi|218198951|gb|EEC81378.1| hypothetical protein OsI_24588 [Oryza sativa Indica Group]
Length = 85
Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILYFKPQTGG 63
+C E ++P D ++C ECG RI+ KKRT++ + + + G
Sbjct: 15 DCGTETLLKPTDVVQCHECGCRILCKKRTRQASRHLEYKCNG 56
>gi|399950021|gb|AFP65677.1| DNA-directed RNA polymerases I, II and III [Chroomonas
mesostigmatica CCMP1168]
Length = 44
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC ++EI + C CG RI+YKKRTK ++Y
Sbjct: 7 ECGGKSEITIGQTVSCSFCGNRILYKKRTKEILVY 41
>gi|171691390|ref|XP_001910620.1| hypothetical protein [Podospora anserina S mat+]
gi|170945643|emb|CAP71756.1| unnamed protein product [Podospora anserina S mat+]
Length = 69
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 34 PIRCRECGYRIMYKKRTKRCILY 56
PIRC++CG R++YK+RT+R + +
Sbjct: 44 PIRCQKCGARVLYKERTRRMVQF 66
>gi|160330979|ref|XP_001712197.1| rpc10 [Hemiselmis andersenii]
gi|159765644|gb|ABW97872.1| rpc10 [Hemiselmis andersenii]
Length = 44
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
EC +NEI I C CG RI+YK RTK+ + Y
Sbjct: 7 ECGGKNEISFSQTISCVFCGTRILYKTRTKKILGY 41
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.146 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,240,534,138
Number of Sequences: 23463169
Number of extensions: 40785888
Number of successful extensions: 102011
Number of sequences better than 100.0: 279
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 101731
Number of HSP's gapped (non-prelim): 281
length of query: 73
length of database: 8,064,228,071
effective HSP length: 44
effective length of query: 29
effective length of database: 7,031,848,635
effective search space: 203923610415
effective search space used: 203923610415
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)