RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2244
         (73 letters)



>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 46

 Score = 58.6 bits (142), Expect = 2e-14
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 22 ECHFENEIRPRDPIRCRECGYRIMYKKRTKRCILY 56
          EC  +  +   D +RC++CG+RI+ K RTKR + +
Sbjct: 9  ECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQF 43


>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase
           {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 24.1 bits (52), Expect = 1.5
 Identities = 7/38 (18%), Positives = 9/38 (23%)

Query: 3   YSQVLVGKCLPGDIEKYYLECHFENEIRPRDPIRCREC 40
            S   VG    G    +Y   + E            E 
Sbjct: 68  LSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQ 105


>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 56

 Score = 22.0 bits (47), Expect = 4.5
 Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 1/19 (5%)

Query: 35 IRCRECGYRIMYKKRTKRC 53
           +CR CG    Y  + K C
Sbjct: 17 TKCRRCG-EKSYHTKKKVC 34


>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 22.7 bits (48), Expect = 5.0
 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 2/65 (3%)

Query: 3  YSQVLVGKCLPGDIEKYYLECHFENEIRPRD--PIRCRECGYRIMYKKRTKRCILYFKPQ 60
          YS   VG  +  + +  +   + EN          R       +   +   +C++     
Sbjct: 28 YSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDS 87

Query: 61 TGGFP 65
               
Sbjct: 88 EDQCV 92


>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 105

 Score = 21.7 bits (46), Expect = 9.0
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 4/24 (16%)

Query: 34 PIRCRECGY----RIMYKKRTKRC 53
          P +CR+CG+     I    R  +C
Sbjct: 67 PAQCRKCGFVFKAEINIPSRCPKC 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.146    0.479 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 306,522
Number of extensions: 12612
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 13
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)