BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2245
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96CN9|GCC1_HUMAN GRIP and coiled-coil domain-containing protein 1 OS=Homo sapiens
           GN=GCC1 PE=1 SV=1
          Length = 775

 Score = 38.1 bits (87), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)

Query: 16  RHKRRYDAL-----KDTKPPNDAEMTLQFLKSAIFYFLT--DPVNAQGHLTALLSILGYS 68
           RH+    AL     K+ +  +     L++LK+ I+ FLT  D +  Q  LTA+L+IL +S
Sbjct: 694 RHREEVAALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFS 753

Query: 69  DAQKENIMK--TQAHAW 83
             +K+ IM+  T A  W
Sbjct: 754 PEEKQVIMRLPTSASWW 770


>sp|Q9D4H2|GCC1_MOUSE GRIP and coiled-coil domain-containing protein 1 OS=Mus musculus
           GN=Gcc1 PE=1 SV=2
          Length = 778

 Score = 36.2 bits (82), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 16  RHKRRYDAL-----KDTKPPNDAEMTLQFLKSAIFYFLT--DPVNAQGHLTALLSILGYS 68
           RH+    AL     K+ +  +     L++LK+ I+ FLT  D +  Q  LTA+L+IL +S
Sbjct: 697 RHREEVGALQSHIEKNMRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFS 756

Query: 69  DAQKENIMK 77
             +K+ +M+
Sbjct: 757 PEEKQVLMR 765


>sp|Q0VS07|MURE_ALCBS UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase OS=Alcanivorax borkumensis (strain SK2 / ATCC
           700651 / DSM 11573) GN=murE PE=3 SV=1
          Length = 490

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 41  KSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENI 75
           K++I +FL D +NA GH  AL+  LG      E I
Sbjct: 116 KTSITWFLRDALNALGHRCALVGTLGLGLKDNEQI 150


>sp|Q9NH13|RP43_RIFPA Exoskeleton protein RP43 OS=Riftia pachyptila PE=1 SV=1
          Length = 421

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 49 TDPVNAQGHLTALLSILGYSDAQKENIMKT 78
          T+PV+ + H T  +  LGYS A+ E +MKT
Sbjct: 19 TNPVHCRQHKTPQVVDLGYSGAKVETVMKT 48


>sp|Q5R9I3|PI3R4_PONAB Phosphoinositide 3-kinase regulatory subunit 4 OS=Pongo abelii
           GN=PIK3R4 PE=2 SV=3
          Length = 1358

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 11  KHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA 70
           +H  +R K+R  +L D  PP D  +  Q LK  +   +T+  + +  L AL   +  S+ 
Sbjct: 743 RHLHMRQKKRNGSLPDCPPPEDPAIA-QLLKKLLSQGMTE--DEEDKLLALKDFMMKSNK 799

Query: 71  QKENIMKTQAH 81
            K NI+  Q+H
Sbjct: 800 AKANIVD-QSH 809


>sp|Q99570|PI3R4_HUMAN Phosphoinositide 3-kinase regulatory subunit 4 OS=Homo sapiens
           GN=PIK3R4 PE=1 SV=3
          Length = 1358

 Score = 29.3 bits (64), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 11  KHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA 70
           +H  +R K+R  +L D  PP D  +  Q LK  +   +T+    +  L AL   +  S+ 
Sbjct: 743 RHLHMRQKKRNGSLPDCPPPEDPAIA-QLLKKLLSQGMTE--EEEDKLLALKDFMMKSNK 799

Query: 71  QKENIMKTQAH 81
            K NI+  Q+H
Sbjct: 800 AKANIVD-QSH 809


>sp|Q7K4Q5|Y0417_DROME Probable protein phosphatase CG10417 OS=Drosophila melanogaster
           GN=CG10417 PE=1 SV=1
          Length = 662

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 1   MGSGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTD 50
           MG G  C N    +++ K++   L+ T PPN  E  L      + + L D
Sbjct: 548 MGDGTGCDNMTAVIVQFKKKLQELQSTIPPNQTEDKLLKTSENVSHSLND 597


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,596,473
Number of Sequences: 539616
Number of extensions: 1013521
Number of successful extensions: 1945
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 7
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)