Query psy2245
Match_columns 88
No_of_seqs 27 out of 29
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 19:51:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upt_B Golgi autoantigen, golg 99.4 6.9E-13 2.4E-17 84.6 5.8 45 35-80 5-49 (60)
2 2q0o_C Probable transcriptiona 90.1 0.18 6.1E-06 35.0 2.5 58 13-70 34-100 (107)
3 1rfy_A TRAM protein;, transcri 89.3 0.22 7.7E-06 34.2 2.5 53 13-70 35-98 (102)
4 2hjd_A Quorum-sensing antiacti 88.2 0.22 7.6E-06 34.3 1.9 53 13-70 35-98 (102)
5 3t76_A VANU, transcriptional r 73.2 2.3 7.9E-05 26.2 2.4 55 17-71 25-81 (88)
6 1zug_A Phage 434 CRO protein; 67.7 9 0.00031 20.5 3.8 56 17-72 4-61 (71)
7 2kpj_A SOS-response transcript 67.1 16 0.00055 21.3 5.1 60 13-72 6-68 (94)
8 1u7k_A GAG polyprotein; capsid 64.1 10 0.00035 26.7 4.4 46 29-81 30-77 (131)
9 2b5a_A C.BCLI; helix-turn-heli 63.4 14 0.00049 20.0 4.2 58 15-72 9-69 (77)
10 3b7h_A Prophage LP1 protein 11 62.4 17 0.00057 19.8 4.5 56 17-72 8-67 (78)
11 3qq6_A HTH-type transcriptiona 61.4 14 0.00047 21.1 4.0 55 18-72 12-70 (78)
12 3s8q_A R-M controller protein; 60.7 20 0.00067 20.0 4.9 59 14-72 9-70 (82)
13 2r1j_L Repressor protein C2; p 60.6 13 0.00044 19.6 3.5 55 18-72 7-64 (68)
14 1y7y_A C.AHDI; helix-turn-heli 58.6 16 0.00054 19.6 3.7 58 14-71 11-71 (74)
15 1r69_A Repressor protein CI; g 57.0 20 0.00068 18.9 3.9 54 19-72 4-59 (69)
16 3g5g_A Regulatory protein; tra 55.7 28 0.00097 21.0 4.9 58 15-72 27-87 (99)
17 3kz3_A Repressor protein CI; f 54.8 8.6 0.0003 21.7 2.3 57 15-71 11-70 (80)
18 1mgs_A Human melanoma growth s 54.7 11 0.00038 22.5 2.9 22 5-26 49-70 (73)
19 3ivp_A Putative transposon-rel 54.7 19 0.00067 21.9 4.1 61 11-71 7-70 (126)
20 1adr_A P22 C2 repressor; trans 53.4 19 0.00064 19.4 3.5 55 18-72 7-64 (76)
21 2ofy_A Putative XRE-family tra 52.7 24 0.00082 19.8 4.0 57 16-72 16-74 (86)
22 1ixs_A Holliday junction DNA h 51.7 14 0.00047 22.1 2.9 24 53-77 16-39 (62)
23 2xi8_A Putative transcription 49.5 18 0.00061 18.9 2.9 51 21-71 6-59 (66)
24 2k9q_A Uncharacterized protein 48.9 24 0.00083 19.5 3.6 55 18-72 4-61 (77)
25 3bs3_A Putative DNA-binding pr 47.3 12 0.00041 20.3 2.0 53 19-71 13-68 (76)
26 2dmn_A Homeobox protein TGIF2L 46.9 45 0.0015 20.0 5.4 49 33-81 15-63 (83)
27 3f6w_A XRE-family like protein 44.2 37 0.0013 18.8 3.9 59 16-74 14-75 (83)
28 1mi2_A Macrophage inflammatory 44.2 8.2 0.00028 23.1 1.1 19 5-23 49-67 (73)
29 2gsl_A Hypothetical protein; a 42.1 66 0.0022 21.9 5.5 45 35-80 16-81 (137)
30 1lmb_3 Protein (lambda repress 41.6 24 0.00084 20.0 2.8 56 16-71 17-75 (92)
31 1b4u_A LIGA, LIGB, protocatech 40.5 15 0.00052 25.8 2.1 48 30-77 25-76 (139)
32 3mxn_A RECQ-mediated genome in 39.9 16 0.00055 26.1 2.2 21 60-80 81-101 (157)
33 3k2a_A Homeobox protein MEIS2; 39.7 54 0.0019 18.9 5.3 48 33-80 6-53 (67)
34 3op9_A PLI0006 protein; struct 39.6 36 0.0012 20.2 3.5 54 18-71 11-67 (114)
35 1du6_A PBX1, homeobox protein 38.8 51 0.0017 18.3 5.5 51 33-83 11-61 (64)
36 3i9v_2 NADH-quinone oxidoreduc 38.7 97 0.0033 21.5 6.1 53 19-76 9-64 (181)
37 3f1p_A Endothelial PAS domain- 38.6 18 0.00062 19.8 1.9 13 60-72 27-39 (117)
38 2bnm_A Epoxidase; oxidoreducta 37.7 38 0.0013 21.8 3.6 63 9-71 3-69 (198)
39 2a6c_A Helix-turn-helix motif; 36.5 58 0.002 18.5 3.9 58 13-70 15-76 (83)
40 3e3r_A Calcyphosin, calcyphosi 36.5 74 0.0025 19.5 5.0 71 3-77 2-80 (204)
41 3m65_A ATP-dependent protease 36.5 45 0.0015 22.4 4.0 30 50-79 156-185 (209)
42 2ewt_A BLDD, putative DNA-bind 36.2 50 0.0017 17.5 4.6 56 16-71 8-68 (71)
43 2zjr_4 50S ribosomal protein L 35.7 10 0.00035 21.6 0.5 9 5-13 25-33 (37)
44 1g6u_A Domain swapped dimer; d 35.7 18 0.00063 21.8 1.7 12 65-76 15-26 (48)
45 2heo_A Z-DNA binding protein 1 35.1 36 0.0012 19.5 2.9 38 40-78 11-48 (67)
46 1zbo_A Hypothetical protein BP 34.8 1E+02 0.0035 20.6 5.6 24 55-78 160-183 (210)
47 1u61_A Hypothetical protein; s 34.6 1.1E+02 0.0036 20.8 5.8 45 35-79 13-80 (138)
48 2wiu_B HTH-type transcriptiona 34.4 41 0.0014 18.7 3.0 60 12-71 8-70 (88)
49 3pxp_A Helix-turn-helix domain 33.8 96 0.0033 23.0 5.7 65 16-80 6-80 (292)
50 3omt_A Uncharacterized protein 33.7 45 0.0015 18.1 3.0 52 20-71 12-66 (73)
51 3vk0_A NHTF, transcriptional r 33.5 79 0.0027 19.0 5.8 58 15-72 20-80 (114)
52 1x2n_A Homeobox protein pknox1 32.7 72 0.0024 18.2 5.3 52 32-83 14-65 (73)
53 3lfp_A CSP231I C protein; tran 30.8 55 0.0019 19.0 3.3 16 60-75 74-89 (98)
54 2qxy_A Response regulator; reg 30.5 27 0.00091 20.2 1.8 71 10-80 58-134 (142)
55 3ljc_A ATP-dependent protease 30.3 95 0.0033 21.6 4.9 24 56-79 171-194 (252)
56 2z16_A Matrix protein 1, M1; A 29.8 59 0.002 23.8 3.9 27 15-42 29-55 (165)
57 1neq_A DNA-binding protein NER 28.6 51 0.0017 19.4 2.8 53 18-72 11-65 (74)
58 3f52_A CLP gene regulator (CLG 28.5 50 0.0017 19.7 2.8 57 16-72 28-87 (117)
59 4anj_A Unconventional myosin-V 28.5 39 0.0013 29.8 3.1 25 56-80 318-342 (1052)
60 3ff5_A PEX14P, peroxisomal bio 28.1 87 0.003 18.8 3.8 38 39-77 12-52 (54)
61 1eot_A Eotaxin; cytokine, chem 28.0 53 0.0018 19.5 2.9 22 5-26 48-69 (74)
62 2yua_A Williams-beuren syndrom 28.0 1E+02 0.0036 18.6 4.5 30 27-56 48-78 (99)
63 3r8s_4 50S ribosomal protein L 27.8 14 0.00049 21.2 0.2 9 5-13 25-34 (38)
64 2vlg_A Sporulation kinase A; h 27.7 26 0.00088 21.0 1.4 24 49-72 15-39 (111)
65 2kum_A C-C motif chemokine 27; 27.5 37 0.0013 21.8 2.2 23 4-26 50-72 (88)
66 1s4k_A Putative cytoplasmic pr 27.3 37 0.0013 23.6 2.3 27 57-83 7-35 (120)
67 1tvx_A NAP-2, neutrophil activ 27.3 38 0.0013 20.4 2.2 14 5-18 50-63 (75)
68 1z96_A DNA-damage, UBA-domain 27.1 69 0.0023 16.3 2.9 22 55-77 5-26 (40)
69 1ur3_M Hypothetical oxidoreduc 27.0 87 0.003 22.6 4.3 76 2-80 234-314 (319)
70 1x57_A Endothelial differentia 26.9 47 0.0016 18.9 2.4 57 15-71 12-71 (91)
71 1b0n_A Protein (SINR protein); 26.8 96 0.0033 17.8 4.0 23 56-78 77-101 (111)
72 1f9p_A CTAP-III, connective ti 26.6 28 0.00095 21.7 1.4 15 5-19 60-74 (85)
73 1ha6_A Macrophage inflammatory 26.4 56 0.0019 19.1 2.7 17 5-21 46-62 (70)
74 3t5t_A Putative glycosyltransf 25.7 43 0.0015 26.7 2.7 33 46-78 417-449 (496)
75 2bl8_A Enterocine A immunity p 25.5 38 0.0013 23.1 2.0 29 59-87 61-93 (103)
76 3olo_A Two-component sensor hi 25.5 47 0.0016 17.5 2.1 39 33-72 8-53 (118)
77 1ddg_A Sulfite reductase (NADP 25.5 82 0.0028 23.4 4.1 39 5-43 325-363 (374)
78 3m4u_A Tyrosine specific prote 25.5 62 0.0021 23.3 3.3 45 14-60 259-304 (306)
79 1b72_B Protein (PBX1); homeodo 25.4 1.1E+02 0.0037 18.0 4.8 50 34-83 10-59 (87)
80 1w63_A Adapter-related protein 25.3 47 0.0016 25.7 2.8 47 30-76 504-550 (618)
81 1lv9_A Small inducible cytokin 25.1 28 0.00096 21.0 1.2 16 5-20 51-66 (77)
82 2ekk_A UBA domain from E3 ubiq 24.9 86 0.003 17.0 3.2 28 50-78 5-32 (47)
83 2fjr_A Repressor protein CI; g 24.8 66 0.0023 20.5 3.1 55 16-72 9-65 (189)
84 2lk2_A Homeobox protein TGIF1; 24.7 1.4E+02 0.0048 19.0 4.7 49 32-80 12-60 (89)
85 1puf_B PRE-B-cell leukemia tra 24.2 1.1E+02 0.0036 17.5 5.3 47 34-80 10-56 (73)
86 1icw_A Interleukin-8, IL-8; cy 24.1 67 0.0023 19.0 2.8 16 5-20 48-63 (72)
87 3bdn_A Lambda repressor; repre 23.8 46 0.0016 22.0 2.2 56 16-71 17-75 (236)
88 3f1p_B ARYL hydrocarbon recept 23.4 21 0.00073 19.7 0.4 13 60-72 30-42 (121)
89 3hlx_A Pyrroloquinoline-quinon 23.0 2.2E+02 0.0076 20.7 6.8 60 15-76 54-115 (258)
90 1whz_A Hypothetical protein; a 22.7 58 0.002 18.7 2.3 21 52-72 47-67 (70)
91 2gzx_A Putative TATD related D 22.5 1E+02 0.0036 20.1 3.7 23 58-80 227-249 (265)
92 1dok_A MCP-1, MCAF, monocyte c 22.4 49 0.0017 19.9 2.0 17 5-21 51-67 (77)
93 3cec_A Putative antidote prote 22.0 1E+02 0.0035 17.9 3.3 54 19-72 21-77 (104)
94 1eig_A Eotaxin-2; chemokine, c 21.9 80 0.0027 18.7 2.8 21 5-25 46-66 (73)
95 2jvl_A TRMBF1; coactivator, he 21.7 56 0.0019 19.8 2.1 58 15-72 33-95 (107)
96 1pc2_A Mitochondria fission pr 21.6 55 0.0019 22.4 2.3 59 3-64 40-100 (152)
97 2v26_A Myosin VI; calmodulin-b 21.4 68 0.0023 27.2 3.2 25 56-80 314-338 (784)
98 3a09_A ALGQ1; sugar binding pr 21.4 47 0.0016 23.5 2.0 21 28-53 321-341 (490)
99 3zqo_A Terminase small subunit 21.3 60 0.0021 19.9 2.2 28 19-47 9-36 (72)
100 2pmy_A RAS and EF-hand domain- 21.3 1.2E+02 0.0041 17.0 5.7 44 35-78 24-69 (91)
101 1d06_A Nitrogen fixation regul 21.1 60 0.0021 18.2 2.1 24 49-72 32-56 (130)
102 1y9q_A Transcriptional regulat 21.1 1E+02 0.0035 19.8 3.4 57 15-71 10-69 (192)
103 3q9s_A DNA-binding response re 21.0 1.1E+02 0.0036 20.4 3.6 36 31-66 118-153 (249)
104 1lkx_A Myosin IE heavy chain; 21.0 71 0.0024 26.8 3.2 25 56-80 247-271 (697)
105 3kxa_A NGO0477 protein, putati 20.8 1.3E+02 0.0043 19.4 3.9 55 21-75 73-130 (141)
106 2h2m_A Protein MURR1, COMM dom 20.7 22 0.00076 24.4 0.1 50 29-78 24-97 (108)
107 3g9g_A Suppressor of yeast pro 20.7 66 0.0023 24.2 2.8 36 36-71 218-258 (287)
108 2wus_R RODZ, putative uncharac 20.4 1.7E+02 0.0057 18.3 4.3 61 13-73 4-73 (112)
109 2ppx_A AGR_C_3184P, uncharacte 20.2 1.1E+02 0.0036 17.9 3.1 63 17-79 31-95 (99)
110 1f2l_A Fractalkine; chemoattra 20.1 50 0.0017 20.0 1.7 15 5-19 48-62 (76)
No 1
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=99.38 E-value=6.9e-13 Score=84.59 Aligned_cols=45 Identities=13% Similarity=0.457 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 35 MTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 35 anLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
+++|||||++|.||+-+ ++.++++||.+||+|||+|.+.|++.-.
T Consensus 5 an~EYLrNVl~~ym~g~-~~~~m~kaI~avL~Fs~~e~q~il~~e~ 49 (60)
T 1upt_B 5 TEFEYLRKVLFEYMMGR-ETKTMAKVITTVLKFPDDQTQKILERED 49 (60)
T ss_dssp HHHHHHHHHHHHHHTTS-SHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 79999999999999966 4688999999999999999999976543
No 2
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=90.11 E-value=0.18 Score=35.01 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHh------CCCCCChh---hHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245 13 NLIRHKRRYDALKD------TKPPNDAE---MTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA 70 (88)
Q Consensus 13 ~~~~~~~r~~~~~~------~k~~~D~E---anLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~ 70 (88)
+-||-+||++++-+ -+...||+ +.|+=|-..--.=..-.++.|.-|+.|+.||||.|.
T Consensus 34 ~AIReHRrLv~~ae~~~qe~~~a~~d~~~~~avl~~~q~eYi~a~~e~~AQq~~lstLid~LGyvPk 100 (107)
T 2q0o_C 34 SAIREHRRLLWADQAVYEEWLRASDDPSISGPVLQTLQDEYVARQKRSEAQQEELSDILDALGFVPD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46999999987654 12345553 233222222112223667888999999999999984
No 3
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=89.26 E-value=0.22 Score=34.25 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHh------CCC-CCCh----hhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245 13 NLIRHKRRYDALKD------TKP-PNDA----EMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA 70 (88)
Q Consensus 13 ~~~~~~~r~~~~~~------~k~-~~D~----EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~ 70 (88)
+-||-+||+.++-+ -++ ..|| ..-++|+...+ -.++.|.-|+.|+.||||.|.
T Consensus 35 ~AIr~HRrLl~~ae~~fq~w~~~~~~dps~~~~lh~eYi~~~i-----e~~AQq~~lstli~~LGyvP~ 98 (102)
T 1rfy_A 35 DAIRTHRRLVEKADELFQALPETYKTGQACGGPQHIRYIEASI-----EMHAQMSALNTLISILGFIPK 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHTTSSCCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcccCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCC
Confidence 56899999987644 111 2333 36788886654 457788899999999999984
No 4
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=88.15 E-value=0.22 Score=34.27 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHh------CCC-CCC----hhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245 13 NLIRHKRRYDALKD------TKP-PND----AEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA 70 (88)
Q Consensus 13 ~~~~~~~r~~~~~~------~k~-~~D----~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~ 70 (88)
+-||-+||+.++-+ -++ ..| ...-++|+...+ -.++.|.-|+.|+.||||.|.
T Consensus 35 ~AIr~HRrLl~~ae~~fq~w~~~~~~dps~~~~lh~eYi~~~i-----e~~AQq~~lstli~~LGyvP~ 98 (102)
T 2hjd_A 35 NAIRLHRQLLEKADQLFQVLPDDIKIGTAAGGEQHLEYIEAMI-----EMHAQMSAVNTLVGLLGFIPK 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHTSCCCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcccCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCC
Confidence 56899999987644 111 223 336788887654 457788899999999999984
No 5
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=73.22 E-value=2.3 Score=26.20 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHH
Q psy2245 17 HKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 17 ~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~E 71 (88)
.|.|+.+++.+++....|.+ +..=++.|..+.....-...+|..|..+|+.++++
T Consensus 25 ~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 25 SYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp ECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHH
Confidence 46788888888888776633 22335677888886556889999999999999875
No 6
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=67.71 E-value=9 Score=20.47 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHH
Q psy2245 17 HKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 17 ~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
+..|+.+++..++....+.+ +..=++.|..+..........+..|...|+.++++-
T Consensus 4 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l~~~~~~l 61 (71)
T 1zug_A 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWL 61 (71)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHHCCCHHHH
Confidence 34567777777776655533 223367788888844333455999999999998764
No 7
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=67.12 E-value=16 Score=21.26 Aligned_cols=60 Identities=7% Similarity=0.109 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHH
Q psy2245 13 NLIRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 13 ~~~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
+...+..|+.+++..++....+.+ +..=++.|..+... ..-....|.+|..+|+.++++-
T Consensus 6 ~~~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l 68 (94)
T 2kpj_A 6 QKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDL 68 (94)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 344567899999998887766633 22335678888884 3345789999999999998864
No 8
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=64.05 E-value=10 Score=26.72 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCCChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhC--CCHHHHHHHHhhhhh
Q psy2245 29 PPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILG--YSDAQKENIMKTQAH 81 (88)
Q Consensus 29 ~~~D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~--FSp~Ek~~V~k~~~~ 81 (88)
-.-||+.-..=++++++-| |-+-..|+-+|+ ||+|||+.|+.....
T Consensus 30 fsedP~~~~~l~e~i~~th-------~pTW~D~qqLL~tLlT~EEr~ril~eArk 77 (131)
T 1u7k_A 30 FSEDPGKLTALIESVLTTH-------QPTWDDCQQLLGTLLTGEEKQRVLLEARK 77 (131)
T ss_dssp TTTCHHHHHHHHHHHHHHT-------CCCHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3468888888888887654 223344444444 899999999877653
No 9
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=63.39 E-value=14 Score=20.03 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
..+-.++.+++..++....+.+ +..=++.|..+... ..-...++.+|...|+.++++-
T Consensus 9 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~l 69 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTF 69 (77)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 3456788888888777665533 22335677888873 3446789999999999999874
No 10
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=62.43 E-value=17 Score=19.79 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCc--cchhhhHHHHHHHhCCCHHHH
Q psy2245 17 HKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDP--VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 17 ~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~--~~~q~hLtAI~sIL~FSp~Ek 72 (88)
+-.|+.+++..++....+.+ +.-=++.|..+.... .-...+|.+|...|+.++++-
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l 67 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDF 67 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45677788887777666533 222356788888844 356789999999999999874
No 11
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=61.37 E-value=14 Score=21.13 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC--ccchhhhHHHHHHHhCCCHHHH
Q psy2245 18 KRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD--PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 18 ~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD--~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
-.|+.+++..++....+.+ +..=++.|..+... ..-...+|.+|..+|+.++++-
T Consensus 12 ~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l 70 (78)
T 3qq6_A 12 GQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 70 (78)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 3566777777777666643 22346778888886 4566799999999999998764
No 12
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=60.73 E-value=20 Score=20.02 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHH
Q psy2245 14 LIRHKRRYDALKDTKPPNDAEMTL--QFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 14 ~~~~~~r~~~~~~~k~~~D~EanL--efLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
...+-.|+.+++..++....+.+- ..=++.|..+... ..-...+|.+|...|+.++++-
T Consensus 9 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~l 70 (82)
T 3s8q_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVF 70 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 445677888888888877666332 2335677788873 4556889999999999999875
No 13
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=60.58 E-value=13 Score=19.58 Aligned_cols=55 Identities=18% Similarity=0.064 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCc-cchhhhHHHHHHHhCCCHHHH
Q psy2245 18 KRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDP-VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 18 ~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~-~~~q~hLtAI~sIL~FSp~Ek 72 (88)
..|+.+++..++....+.+ +.-=++.|..+.... .-....+.+|...|+.++++-
T Consensus 7 ~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l 64 (68)
T 2r1j_L 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (68)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 4566666666665555533 222356778888743 335788999999999998763
No 14
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=58.56 E-value=16 Score=19.60 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 14 LIRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 14 ~~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
...+-.++.+++..++....+.+ +..=++.|..+... ..-...++.+|...|+.++++
T Consensus 11 ~~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 11 LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRE 71 (74)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 34566788888888877666633 22235677788873 344578899999999998864
No 15
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=56.96 E-value=20 Score=18.92 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHH
Q psy2245 19 RRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 19 ~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
.|+.+++..++....+.+ +..=++.|..+..........+..|...|+.++++-
T Consensus 4 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~~~~~~l 59 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWL 59 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHCcCHHHH
Confidence 566677776766655533 222357788888844332333999999999998764
No 16
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=55.75 E-value=28 Score=21.03 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
..+-.||.+++..++....+.+ +..=++.|..+... ..-....|.+|..+|+.++++-
T Consensus 27 ~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l 87 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVF 87 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4567889999998888776643 23346677788773 4556889999999999999875
No 17
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=54.81 E-value=8.6 Score=21.72 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCccc-hhhhHHHHHHHhCCCHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDPVN-AQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~~~-~q~hLtAI~sIL~FSp~E 71 (88)
.+...++.+++++++....+.+ +..=++.|..+...... ...++..|..+|+.++++
T Consensus 11 ~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~ 70 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEE 70 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 3556677777777776655532 22336778888884432 568999999999999875
No 18
>1mgs_A Human melanoma growth stimulatory activity; chemokine(growth factor); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1msg_A 1msh_A 1qnk_A
Probab=54.68 E-value=11 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=15.0
Q ss_pred ccccCCcchHHHHHHHHHHHHh
Q psy2245 5 LVCTNPKHNLIRHKRRYDALKD 26 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~~~~~~ 26 (88)
-||.||++....-+-+..+.+.
T Consensus 49 ~vC~dP~~~wVk~~i~~l~~~~ 70 (73)
T 1mgs_A 49 KACLNPASPIVKKIIEKMLNSD 70 (73)
T ss_dssp EEEECTTSHHHHHHHHHHHHHT
T ss_pred EEecCCChHHHHHHHHHHHhhc
Confidence 4899999987765544444443
No 19
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=54.68 E-value=19 Score=21.91 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHHHhCCCCCChhhHHH--HHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 11 KHNLIRHKRRYDALKDTKPPNDAEMTLQ--FLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 11 ~~~~~~~~~r~~~~~~~k~~~D~EanLe--fLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
+-+...+-.|+.+++..++....+.+-. .=++.|..+... ..-...+|.+|..+||.|+.+
T Consensus 7 ~~~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 7 KYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp SCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHH
T ss_pred ccCHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3455667778888888777766553321 224555666552 233466777777777776654
No 20
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=53.42 E-value=19 Score=19.40 Aligned_cols=55 Identities=18% Similarity=0.064 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCc-cchhhhHHHHHHHhCCCHHHH
Q psy2245 18 KRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDP-VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 18 ~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~-~~~q~hLtAI~sIL~FSp~Ek 72 (88)
-.|+.+++..++....+.+ +.-=++.|..+.... .-...++..|...|+.++++-
T Consensus 7 ~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 64 (76)
T 1adr_A 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (76)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 3456666665555544422 222356677888743 335788999999999999864
No 21
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=52.67 E-value=24 Score=19.81 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhcCc--cchhhhHHHHHHHhCCCHHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDP--VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~EanLefLKnaIy~fLTD~--~~~q~hLtAI~sIL~FSp~Ek 72 (88)
.+-.|+.+++..++..|-...+..=++.|..+.... .-.-.+|.+|...|+.++.+-
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l 74 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDV 74 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 456788888888722111122333457788888743 456789999999999998874
No 22
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=51.66 E-value=14 Score=22.08 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.3
Q ss_pred chhhhHHHHHHHhCCCHHHHHHHHh
Q psy2245 53 NAQGHLTALLSILGYSDAQKENIMK 77 (88)
Q Consensus 53 ~~q~hLtAI~sIL~FSp~Ek~~V~k 77 (88)
..++-+.|+++ ||||+.|-..+.+
T Consensus 16 ~~~ea~~AL~a-LGY~~~ea~kav~ 39 (62)
T 1ixs_A 16 AAEEAVMALAA-LGFKEAQARAVVL 39 (62)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 34566677666 9999999776654
No 23
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=49.55 E-value=18 Score=18.87 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=32.2
Q ss_pred HHHHHhCCCCCChhhH--HHHHHHHHHHHhcCc-cchhhhHHHHHHHhCCCHHH
Q psy2245 21 YDALKDTKPPNDAEMT--LQFLKSAIFYFLTDP-VNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 21 ~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~-~~~q~hLtAI~sIL~FSp~E 71 (88)
+.+++..++....+.+ +..=++.|..+.... .-...++.+|...|+.++++
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~ 59 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLED 59 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 4444555554444422 222356677888733 44578899999999999876
No 24
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=48.95 E-value=24 Score=19.55 Aligned_cols=55 Identities=5% Similarity=-0.022 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCc-cchhhhHHHHHHHhCCCHHHH
Q psy2245 18 KRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDP-VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 18 ~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~-~~~q~hLtAI~sIL~FSp~Ek 72 (88)
..|+.+++..++....+.+ +..=++.|..+.... .-...++..|..+|+.++++-
T Consensus 4 ~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l 61 (77)
T 2k9q_A 4 SNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNAL 61 (77)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 3566666666666655532 223356677777743 345788999999999999874
No 25
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=47.33 E-value=12 Score=20.32 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 19 RRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 19 ~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
.|+.+++..++....+.+ +..=++.|..+... ..-...++.+|...|+.++++
T Consensus 13 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~ 68 (76)
T 3bs3_A 13 NRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQ 68 (76)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 355566666665555433 22235778888883 334578899999999998864
No 26
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=46.88 E-value=45 Score=20.00 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhhh
Q psy2245 33 AEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAH 81 (88)
Q Consensus 33 ~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~~ 81 (88)
+...++-|++.+..++..+--....-..|...++.|+.+.++--..+..
T Consensus 15 s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~ 63 (83)
T 2dmn_A 15 PAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARR 63 (83)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHh
Confidence 4567888999999888877666777788999999999988875554443
No 27
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=44.21 E-value=37 Score=18.78 Aligned_cols=59 Identities=5% Similarity=-0.175 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHH--HHHHHHHHHHhcCc-cchhhhHHHHHHHhCCCHHHHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAEMTL--QFLKSAIFYFLTDP-VNAQGHLTALLSILGYSDAQKEN 74 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~EanL--efLKnaIy~fLTD~-~~~q~hLtAI~sIL~FSp~Ek~~ 74 (88)
.+-.++.+++..++....|.+- ..=++.|..+.... .-...+|.+|..+|+.++++--.
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~ 75 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLS 75 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3456777777777776665332 23356777787733 44678999999999999987543
No 28
>1mi2_A Macrophage inflammatory protein-2; MIP-2, chemokine, cytokine; NMR {Mus musculus} SCOP: d.9.1.1 PDB: 3n52_A
Probab=44.19 E-value=8.2 Score=23.15 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=12.9
Q ss_pred ccccCCcchHHHHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRRYDA 23 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~~~ 23 (88)
-||.||++....-+-+..+
T Consensus 49 ~vC~dP~~~wVk~~ik~l~ 67 (73)
T 1mi2_A 49 KVCLDPEAPLVQKIIQKIL 67 (73)
T ss_dssp EEEESSSCSTTHHHHHHHH
T ss_pred eEecCCchHHHHHHHHHHH
Confidence 4899999987655443333
No 29
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=42.12 E-value=66 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhc------CccchhhhHH-------------HHHHHhC--CCHHHHHHHHhhhh
Q psy2245 35 MTLQFLKSAIFYFLT------DPVNAQGHLT-------------ALLSILG--YSDAQKENIMKTQA 80 (88)
Q Consensus 35 anLefLKnaIy~fLT------D~~~~q~hLt-------------AI~sIL~--FSp~Ek~~V~k~~~ 80 (88)
..|+||=++||.+.. .|. +.+.|+ .++.-|+ +|++|+..+.+-+.
T Consensus 16 ~~LefLGDAVleL~vr~~L~~~~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrn 81 (137)
T 2gsl_A 16 LELAFLGDAIWELEIRKYYLQFGY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKN 81 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhccc
Confidence 589999999998665 333 444443 4555667 99999998776543
No 30
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=41.57 E-value=24 Score=19.96 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
++..++.+++..++....+.+ +..=++.|..+... ..-...++..|..+|+.++++
T Consensus 17 ~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~ 75 (92)
T 1lmb_3 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEE 75 (92)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 455666666676666655533 22336778888874 334568899999999998865
No 31
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=40.46 E-value=15 Score=25.82 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=30.6
Q ss_pred CCChhhH-HHHHHHHHHHHhcCccchhhhH---HHHHHHhCCCHHHHHHHHh
Q psy2245 30 PNDAEMT-LQFLKSAIFYFLTDPVNAQGHL---TALLSILGYSDAQKENIMK 77 (88)
Q Consensus 30 ~~D~Ean-LefLKnaIy~fLTD~~~~q~hL---tAI~sIL~FSp~Ek~~V~k 77 (88)
+-|.+.+ =-|--|-+..=|.+++++..-+ .|.+.=.+.|+|||++|+.
T Consensus 25 ~Fd~~~s~kgY~LNkf~~sL~~~~~RerF~aDpeA~l~~~gLTeEEr~AV~~ 76 (139)
T 1b4u_A 25 VFTAQRARKGYNLNQFAMSLMKAENRERFKADESAYLDEWNLTPAAKAAVLA 76 (139)
T ss_dssp CCCHHHHHHTHHHHHHHHHTTSHHHHHHHHHCHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHhHHHHHHHHHHCCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHc
Confidence 4455522 2244455555556676665544 3677778999999999965
No 32
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=39.88 E-value=16 Score=26.15 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=16.9
Q ss_pred HHHHHhCCCHHHHHHHHhhhh
Q psy2245 60 ALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 60 AI~sIL~FSp~Ek~~V~k~~~ 80 (88)
-+..++||||+|.+...|-+.
T Consensus 81 VLt~lIGfS~~E~~~lkkdp~ 101 (157)
T 3mxn_A 81 ILTSLIGFSVPEMKQSKKDPL 101 (157)
T ss_dssp HHHHHHSCCHHHHHHHTTSHH
T ss_pred HHHhhhCCCHHHHHHHhhCHH
Confidence 467899999999988776554
No 33
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=39.70 E-value=54 Score=18.92 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 33 AEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 33 ~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
|...++-|++.+..++..|--....-..|...++.|+.+.++=-..+.
T Consensus 6 ~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR 53 (67)
T 3k2a_A 6 PKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINAR 53 (67)
T ss_dssp CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHH
Confidence 456788899998888887766677778899999999988765444433
No 34
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=39.65 E-value=36 Score=20.23 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCChhhHH--HHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 18 KRRYDALKDTKPPNDAEMTL--QFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 18 ~~r~~~~~~~k~~~D~EanL--efLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
..|+.+++..++....+.+- -.=++.|..+... ..-...+|.+|..+|+.|+++
T Consensus 11 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~ 67 (114)
T 3op9_A 11 AENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDE 67 (114)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 34555555555554444221 1224455555552 233456666666666666654
No 35
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.84 E-value=51 Score=18.35 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhhhcc
Q psy2245 33 AEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAW 83 (88)
Q Consensus 33 ~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~~~W 83 (88)
+...++-|++.++....++--.......|..-||.|+.+.++=-..+...|
T Consensus 11 t~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 61 (64)
T 1du6_A 11 NKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 61 (64)
T ss_dssp TTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 446788888887665776666677788899999999998877554444433
No 36
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=38.73 E-value=97 Score=21.51 Aligned_cols=53 Identities=6% Similarity=0.125 Sum_probs=38.6
Q ss_pred HHHHHHHhCCC-CCChhhHHHHHHHH--HHHHhcCccchhhhHHHHHHHhCCCHHHHHHHH
Q psy2245 19 RRYDALKDTKP-PNDAEMTLQFLKSA--IFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76 (88)
Q Consensus 19 ~r~~~~~~~k~-~~D~EanLefLKna--Iy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~ 76 (88)
.++++....-+ ..++++.|.-|..+ .|.||. ...+.+|...|+.++.|..-|.
T Consensus 9 ~~i~~ii~~y~~~~~~~~li~~L~~~Q~~~G~l~-----~~~~~~iA~~l~l~~~~V~~Va 64 (181)
T 3i9v_2 9 DFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIR-----PERIEEIARLVGTTPTEVMGVA 64 (181)
T ss_dssp HHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCC-----HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHHHhCCCC-----HHHHHHHHHHhCcCHHHHHHHH
Confidence 34555544333 24788888888764 566664 5679999999999999999884
No 37
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=38.64 E-value=18 Score=19.76 Aligned_cols=13 Identities=15% Similarity=0.509 Sum_probs=11.1
Q ss_pred HHHHHhCCCHHHH
Q psy2245 60 ALLSILGYSDAQK 72 (88)
Q Consensus 60 AI~sIL~FSp~Ek 72 (88)
|...+||++|+|-
T Consensus 27 ~~~~~~Gy~~~el 39 (117)
T 3f1p_A 27 RITELIGYHPEEL 39 (117)
T ss_dssp HHHHHHCCCHHHH
T ss_pred ChhhhhCCCHHHH
Confidence 6788999999884
No 38
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=37.74 E-value=38 Score=21.80 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCc--cchhhhHHHHHHHhCCCHHH
Q psy2245 9 NPKHNLIRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDP--VNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 9 ~~~~~~~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~--~~~q~hLtAI~sIL~FSp~E 71 (88)
|++.....+-.|+.++++.++....+.+ +..=++.|..+.... .-...+|..|...|+.+..+
T Consensus 3 ~~~~~~~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~ 69 (198)
T 2bnm_A 3 NTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGA 69 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGG
T ss_pred CchhHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHH
Confidence 4455566788899999998887766633 333467777787743 35678899999999987643
No 39
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=36.54 E-value=58 Score=18.48 Aligned_cols=58 Identities=3% Similarity=-0.044 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHHHHhcCcc--chhhhHHHHHHHhCCCHH
Q psy2245 13 NLIRHKRRYDALKDTKPPNDAEMTL--QFLKSAIFYFLTDPV--NAQGHLTALLSILGYSDA 70 (88)
Q Consensus 13 ~~~~~~~r~~~~~~~k~~~D~EanL--efLKnaIy~fLTD~~--~~q~hLtAI~sIL~FSp~ 70 (88)
.......|+.+++..++....+.+- ..=++.|..+..... -.-.+|..|...|+.+++
T Consensus 15 ~~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 15 MRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVE 76 (83)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeE
Confidence 3455678899999998887777442 233677888888543 457889999999998864
No 40
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=36.52 E-value=74 Score=19.54 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=26.4
Q ss_pred CcccccCCcchH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhcCccc--hhhhHHHHHHHhC--CCHHHHHH
Q psy2245 3 SGLVCTNPKHNL----IRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVN--AQGHLTALLSILG--YSDAQKEN 74 (88)
Q Consensus 3 ~~~~~~~~~~~~----~~~~~r~~~~~~~k~~~D~EanLefLKnaIy~fLTD~~~--~q~hLtAI~sIL~--FSp~Ek~~ 74 (88)
||++.+.|-... -..-.++......+ ....++-|+.++-.|=+|..| ...-|..++.-++ ++++|-..
T Consensus 2 sgl~~~~p~~~~~~~~~~~~~~lr~~~~~~----~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~ 77 (204)
T 3e3r_A 2 SGLVPRGPLGSHMDAVDATMEKLRAQCLSR----GASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEG 77 (204)
T ss_dssp TTCCCC------CHHHHHHHHHHHC-----------------CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHH
T ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHc----CchhHHHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHH
Confidence 788888884222 12222222222111 123445566666555444432 2344555555555 45566555
Q ss_pred HHh
Q psy2245 75 IMK 77 (88)
Q Consensus 75 V~k 77 (88)
+.+
T Consensus 78 ~~~ 80 (204)
T 3e3r_A 78 VCR 80 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 41
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=36.47 E-value=45 Score=22.38 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=22.0
Q ss_pred CccchhhhHHHHHHHhCCCHHHHHHHHhhh
Q psy2245 50 DPVNAQGHLTALLSILGYSDAQKENIMKTQ 79 (88)
Q Consensus 50 D~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~ 79 (88)
+..+-..-...|.++|.++++|||.++...
T Consensus 156 ~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~ 185 (209)
T 3m65_A 156 DIEEPGRMADIVASHLPLKLKDKQDILETA 185 (209)
T ss_dssp TCCCHHHHHHHHHHHSCCCHHHHHHHHTCC
T ss_pred ccCCHHHHHHHHHHhCCCCHHHHHHHHcCC
Confidence 333333445688999999999999997653
No 42
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=36.17 E-value=50 Score=17.50 Aligned_cols=56 Identities=7% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHH----HHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAEMTLQ----FLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~EanLe----fLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
.+-.|+.+++..++....+.+-. .=++.|..+... ..-...++.+|...|+.++++
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 45677888888777766554322 234567777763 334578899999999998864
No 43
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=35.73 E-value=10 Score=21.63 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=7.0
Q ss_pred ccccCCcch
Q psy2245 5 LVCTNPKHN 13 (88)
Q Consensus 5 ~~~~~~~~~ 13 (88)
++|.||+|.
T Consensus 25 VicknPrhK 33 (37)
T 2zjr_4 25 VICSNVKHK 33 (37)
T ss_dssp ECCSSSTTC
T ss_pred EECCCCccc
Confidence 368899984
No 44
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.72 E-value=18 Score=21.77 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=9.7
Q ss_pred hCCCHHHHHHHH
Q psy2245 65 LGYSDAQKENIM 76 (88)
Q Consensus 65 L~FSp~Ek~~V~ 76 (88)
=||||+|..+.+
T Consensus 15 egfspeelaale 26 (48)
T 1g6u_A 15 EGFSPEELAALE 26 (48)
T ss_dssp TTCSHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 489999987764
No 45
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.10 E-value=36 Score=19.50 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhh
Q psy2245 40 LKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKT 78 (88)
Q Consensus 40 LKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~ 78 (88)
.+..|+.+|.+ .+..-.++.|...|+.|......+++.
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 46677788864 223357889999999998877766543
No 46
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=34.77 E-value=1e+02 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=19.8
Q ss_pred hhhHHHHHHHhCCCHHHHHHHHhh
Q psy2245 55 QGHLTALLSILGYSDAQKENIMKT 78 (88)
Q Consensus 55 q~hLtAI~sIL~FSp~Ek~~V~k~ 78 (88)
..-...|.++|.++++|||.++..
T Consensus 160 ~~lad~ia~~l~l~~~ekQ~lLe~ 183 (210)
T 1zbo_A 160 GWVADRWAEMLSLPPADKARLLLL 183 (210)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhC
Confidence 344578999999999999999765
No 47
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=34.65 E-value=1.1e+02 Score=20.79 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHhc------Cc---cc----------hhhhHHHHHHHh----CCCHHHHHHHHhhh
Q psy2245 35 MTLQFLKSAIFYFLT------DP---VN----------AQGHLTALLSIL----GYSDAQKENIMKTQ 79 (88)
Q Consensus 35 anLefLKnaIy~fLT------D~---~~----------~q~hLtAI~sIL----~FSp~Ek~~V~k~~ 79 (88)
..|+||=++||.+.. .+ +| +...+..++.-| +++++|...+.+-+
T Consensus 13 erLefLGDAVlel~vr~~L~~~~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Gr 80 (138)
T 1u61_A 13 LALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGR 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCC
Confidence 479999999997654 12 22 223456677778 99999998886543
No 48
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=34.38 E-value=41 Score=18.65 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 12 HNLIRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 12 ~~~~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
.+...+-.|+.+++..++....+.+ +..=++.|..+... ..-...+|.+|...|+.++++
T Consensus 8 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~ 70 (88)
T 2wiu_B 8 YSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_dssp CSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 3445567788888888877666633 22235667777773 344578899999999987653
No 49
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=33.83 E-value=96 Score=23.01 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhC------CCCCChhhHHH-HHHHHHHHHh-cCc--cchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 16 RHKRRYDALKDT------KPPNDAEMTLQ-FLKSAIFYFL-TDP--VNAQGHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 16 ~~~~r~~~~~~~------k~~~D~EanLe-fLKnaIy~fL-TD~--~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
.+-.+|.++++. ++....|.+.. =+...-|..+ +.. .-+.++|.+|...|+.|++|+.....+..
T Consensus 6 ~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~er~~L~~la~ 80 (292)
T 3pxp_A 6 AFGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGERREFFFAAT 80 (292)
T ss_dssp HHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCccCcCCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHhhcc
Confidence 345677777777 66666663321 1111222223 222 45679999999999999999988876643
No 50
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.70 E-value=45 Score=18.12 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=33.8
Q ss_pred HHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 20 RYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 20 r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
|+.+++..++....+.+ +..=++.|..+... ..-...++..|..+|+.++++
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 44555555555444422 22235678888883 355688999999999998865
No 51
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=33.54 E-value=79 Score=18.96 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhc-CccchhhhHHHHHHHhCCCHHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLT-DPVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLT-D~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
..+-.|+.+++..++....|.+ +..=++.|..+.. ...-....|.+|..+|+.++++-
T Consensus 20 ~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l 80 (114)
T 3vk0_A 20 AVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQL 80 (114)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 4567888888888888766644 2233677888887 33456789999999999998763
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.73 E-value=72 Score=18.23 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=38.1
Q ss_pred ChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhhhcc
Q psy2245 32 DAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAW 83 (88)
Q Consensus 32 D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~~~W 83 (88)
=+...++-|.+.+...+.++--....-..|...++.|+.+.++=-..+...|
T Consensus 14 ~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 65 (73)
T 1x2n_A 14 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhc
Confidence 3456788899888776666655677778899999999998877555444434
No 53
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=30.77 E-value=55 Score=18.99 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=10.5
Q ss_pred HHHHHhCCCHHHHHHH
Q psy2245 60 ALLSILGYSDAQKENI 75 (88)
Q Consensus 60 AI~sIL~FSp~Ek~~V 75 (88)
.+..+-..++++++.|
T Consensus 74 ~~~~~~~l~~~~~~~~ 89 (98)
T 3lfp_A 74 IILTWNELNEQERKRI 89 (98)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHH
Confidence 3455667777777776
No 54
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.48 E-value=27 Score=20.21 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 10 PKHNLIRHKRRYDALKDTK------PPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 10 ~~~~~~~~~~r~~~~~~~k------~~~D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
|..+-+...+++.+....- +..|++...+.++.-+..||.-|...++-+.+|..++.-.......+.....
T Consensus 58 ~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 134 (142)
T 2qxy_A 58 EGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRVTVSLRKNIE 134 (142)
T ss_dssp TTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccccchHHHhccc
Confidence 4444455555555432221 2246777788888888899998888888888999988877766666655554
No 55
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=30.31 E-value=95 Score=21.58 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=19.7
Q ss_pred hhHHHHHHHhCCCHHHHHHHHhhh
Q psy2245 56 GHLTALLSILGYSDAQKENIMKTQ 79 (88)
Q Consensus 56 ~hLtAI~sIL~FSp~Ek~~V~k~~ 79 (88)
.-...|.++|.++++||+.++...
T Consensus 171 ~Lad~ia~~l~l~~~eKQ~LLe~~ 194 (252)
T 3ljc_A 171 RLADTIAAHMPLKLADKQSVLEMS 194 (252)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHhcC
Confidence 445688999999999999997653
No 56
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=29.79 E-value=59 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMTLQFLKS 42 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~EanLefLKn 42 (88)
-++.+++...-..| -.|-|+.||+||+
T Consensus 29 aeia~~l~~~f~gk-ntDLealmEWlk~ 55 (165)
T 2z16_A 29 AEIAQKLEDVFAGK-NTDLEALMEWLKT 55 (165)
T ss_dssp HHHHHHHHHHHHTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHccc-ccCHHHHHHHHhc
Confidence 45678888877777 5799999999997
No 57
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=28.58 E-value=51 Score=19.41 Aligned_cols=53 Identities=6% Similarity=-0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCChhh--HHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHH
Q psy2245 18 KRRYDALKDTKPPNDAEM--TLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 18 ~~r~~~~~~~k~~~D~Ea--nLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
-.|+.++...++....+- .+..=++.|-..++.+. -....+|...||.|++|-
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~~~--p~~~~~IA~aLgv~~~~L 65 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHW--PKGEQIIANALETKPEVI 65 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTSSC--HHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC--ccHHHHHHHHHCcCHHHH
Confidence 345555555666555552 22223556666677654 234456999999999873
No 58
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=28.55 E-value=50 Score=19.67 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
.+-.|+.+++..++....+.+ +..=++.|..+... ..-.-.+|.+|...|+.++.+-
T Consensus 28 ~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l 87 (117)
T 3f52_A 28 ALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADV 87 (117)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 455677777777766655532 22336777888873 3356789999999999999764
No 59
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=28.54 E-value=39 Score=29.82 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=19.5
Q ss_pred hhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 56 GHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 56 ~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
+.+..-+.+||||++|...|.+.=+
T Consensus 318 ~~~~~Am~~lGfs~~e~~~I~~iLA 342 (1052)
T 4anj_A 318 IRMCTAMKKIGLDDEEKLDLFRVVA 342 (1052)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455667899999999999977543
No 60
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=28.05 E-value=87 Score=18.79 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHh---CCCHHHHHHHHh
Q psy2245 39 FLKSAIFYFLTDPVNAQGHLTALLSIL---GYSDAQKENIMK 77 (88)
Q Consensus 39 fLKnaIy~fLTD~~~~q~hLtAI~sIL---~FSp~Ek~~V~k 77 (88)
-+.+|+ .||.||..++--+.-=...| |.|++|.+..++
T Consensus 12 li~~Av-~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 12 LIATAV-KFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHH-HHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHH-HHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444 69999988877766544444 899999877654
No 61
>1eot_A Eotaxin; cytokine, chemokine, protein synthesis, solution structure, CCR3, eosinophil; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 2eot_A
Probab=28.04 E-value=53 Score=19.53 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=14.2
Q ss_pred ccccCCcchHHHHHHHHHHHHh
Q psy2245 5 LVCTNPKHNLIRHKRRYDALKD 26 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~~~~~~ 26 (88)
-||.||+....+-+-+..+.+.
T Consensus 48 ~vC~dP~~~WVq~~i~~l~~~~ 69 (74)
T 1eot_A 48 DICADPKKKWVQDSMKYLDQKS 69 (74)
T ss_dssp EEEECTTCHHHHHHHHHHHHHS
T ss_pred EEeCCCChHHHHHHHHHHHHhc
Confidence 4899999987655444444343
No 62
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.98 E-value=1e+02 Score=18.65 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=17.2
Q ss_pred CCCCCChhhHHHHHH-HHHHHHhcCccchhh
Q psy2245 27 TKPPNDAEMTLQFLK-SAIFYFLTDPVNAQG 56 (88)
Q Consensus 27 ~k~~~D~EanLefLK-naIy~fLTD~~~~q~ 56 (88)
.++..++++.-.|-+ +.-|..|+|+.-|..
T Consensus 48 Dk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 78 (99)
T 2yua_A 48 DRNSGSAEAAERFTRISQAYVVLGSATLRRK 78 (99)
T ss_dssp TTCSSCSHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 444445665555533 445788888775443
No 63
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=27.84 E-value=14 Score=21.19 Aligned_cols=9 Identities=44% Similarity=1.346 Sum_probs=6.9
Q ss_pred cccc-CCcch
Q psy2245 5 LVCT-NPKHN 13 (88)
Q Consensus 5 ~~~~-~~~~~ 13 (88)
++|. ||+|.
T Consensus 25 Vick~nPrhK 34 (38)
T 3r8s_4 25 VICSAEPKHK 34 (38)
T ss_dssp EEETTCGGGC
T ss_pred EEeCCCCchh
Confidence 4687 99985
No 64
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=27.67 E-value=26 Score=21.04 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=15.6
Q ss_pred cCccchhhhH-HHHHHHhCCCHHHH
Q psy2245 49 TDPVNAQGHL-TALLSILGYSDAQK 72 (88)
Q Consensus 49 TD~~~~q~hL-tAI~sIL~FSp~Ek 72 (88)
.|+.|+--.. .|+..+||+|++|-
T Consensus 15 ~d~~G~i~yvn~~~~~~lGy~~~el 39 (111)
T 2vlg_A 15 LASNGRIIYISANSKLHLGYLQGEM 39 (111)
T ss_dssp ECTTSBEEEECTTHHHHHSCCHHHH
T ss_pred EcCCCeEEEEChHHHHHhCCCHHHH
Confidence 3544432222 47889999999984
No 65
>2kum_A C-C motif chemokine 27; CCL27, ctack, cytokine, disulfide bond, polymorph signaling protein; NMR {Homo sapiens}
Probab=27.51 E-value=37 Score=21.79 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=15.4
Q ss_pred cccccCCcchHHHHHHHHHHHHh
Q psy2245 4 GLVCTNPKHNLIRHKRRYDALKD 26 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~r~~~~~~ 26 (88)
+-||.||+..-..-+-+..+.+.
T Consensus 50 r~vCAdP~~~WVq~~mk~Ld~k~ 72 (88)
T 2kum_A 50 RSICIHPQNPSLSQWFEHQERKL 72 (88)
T ss_dssp EEEEECSSCHHHHHHHHHHHHCG
T ss_pred CeEeCCCchHHHHHHHHHHHHhh
Confidence 45999999886655555455543
No 66
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=27.32 E-value=37 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.9
Q ss_pred hHHHHHHHhCCCHHHHHHHHh--hhhhcc
Q psy2245 57 HLTALLSILGYSDAQKENIMK--TQAHAW 83 (88)
Q Consensus 57 hLtAI~sIL~FSp~Ek~~V~k--~~~~~W 83 (88)
-|+||-.||++|.+|-+.+.. ....+|
T Consensus 7 ELkalR~ilgLt~~EaA~~i~~~vs~rtW 35 (120)
T 1s4k_A 7 ELQALRRIFDMTIEECTIYITQDNNSATW 35 (120)
T ss_dssp HHHHHHHHTTCCHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHhccCCHHHH
Confidence 589999999999999988875 344556
No 67
>1tvx_A NAP-2, neutrophil activating peptide 2 variant; cytokine; 1.75A {Homo sapiens} SCOP: d.9.1.1 PDB: 1nap_A
Probab=27.30 E-value=38 Score=20.39 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=10.9
Q ss_pred ccccCCcchHHHHH
Q psy2245 5 LVCTNPKHNLIRHK 18 (88)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (88)
-||.||+.....-+
T Consensus 50 ~vC~dP~~~WVq~~ 63 (75)
T 1tvx_A 50 KICLDPDAPRIKKI 63 (75)
T ss_dssp EEEECTTCHHHHHH
T ss_pred eEecCCChHHHHHH
Confidence 48999999876544
No 68
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=27.14 E-value=69 Score=16.27 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=14.4
Q ss_pred hhhHHHHHHHhCCCHHHHHHHHh
Q psy2245 55 QGHLTALLSILGYSDAQKENIMK 77 (88)
Q Consensus 55 q~hLtAI~sIL~FSp~Ek~~V~k 77 (88)
+..+.-+... |||+++-...++
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~ 26 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALD 26 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHH
Confidence 4456666665 999877655544
No 69
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=26.96 E-value=87 Score=22.58 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=45.9
Q ss_pred CCcccccCCcchHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHH--HHHHhcCccchhhhHHHHHHHhC--CCHHHHHHHH
Q psy2245 2 GSGLVCTNPKHNLIRHKRRYDALKDTKPPND-AEMTLQFLKSA--IFYFLTDPVNAQGHLTALLSILG--YSDAQKENIM 76 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~r~~~~~~~k~~~D-~EanLefLKna--Iy~fLTD~~~~q~hLtAI~sIL~--FSp~Ek~~V~ 76 (88)
|+|+.-.+|+ ..+.-..+.++-+..+..- ++.+|.|+-+- +---+.-.. +.+||...+.++. +|++|.+.|.
T Consensus 234 ~~G~L~~~~~--~~~~~~~l~~ia~~~g~t~~aqvaL~w~l~~~~~~~~I~G~~-~~~~l~en~~a~~~~Ls~ee~~~l~ 310 (319)
T 1ur3_M 234 GGGRLFNDDY--FQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSG-KIERVRAAVEAETLKMTRQQWFRIR 310 (319)
T ss_dssp TTTCSSSCGG--GHHHHHHHHHHHHHTTCSCHHHHHHHHHHTSTTCCEEEECCS-CHHHHHHHHGGGGCCCCHHHHHHHH
T ss_pred cCccccCCch--hHHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCeEEEeCCC-CHHHHHHHHHhccCCCCHHHHHHHH
Confidence 4555433332 2334456666666666666 88889887653 111122223 4677887777765 6899999988
Q ss_pred hhhh
Q psy2245 77 KTQA 80 (88)
Q Consensus 77 k~~~ 80 (88)
++..
T Consensus 311 ~~~~ 314 (319)
T 1ur3_M 311 KAAL 314 (319)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7643
No 70
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=26.93 E-value=47 Score=18.91 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
..+-.++.+++..++....+.+ +..=++.|..+... ..-...+|..|..+|+.++++
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3456788888888887766633 23345667777773 334578899999999998876
No 71
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=26.79 E-value=96 Score=17.82 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=15.6
Q ss_pred hhHHHHHHHh--CCCHHHHHHHHhh
Q psy2245 56 GHLTALLSIL--GYSDAQKENIMKT 78 (88)
Q Consensus 56 ~hLtAI~sIL--~FSp~Ek~~V~k~ 78 (88)
.....|...+ ++|++++..|...
T Consensus 77 ~~~~~l~~~~~~~l~~e~~~~i~~~ 101 (111)
T 1b0n_A 77 EWEKLVRDAMTSGVSKKQFREFLDY 101 (111)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445555554 8999999888654
No 72
>1f9p_A CTAP-III, connective tissue activating peptide-III; chemokine-heparin analog complex, blood clotting; 1.93A {Homo sapiens} SCOP: d.9.1.1
Probab=26.59 E-value=28 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=11.3
Q ss_pred ccccCCcchHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKR 19 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (88)
-||.||+.....-+-
T Consensus 60 ~vCadP~~~WVk~~i 74 (85)
T 1f9p_A 60 KICLDPDAPRIKKIV 74 (85)
T ss_dssp EEEECTTCHHHHHHH
T ss_pred eEecCCChHHHHHHH
Confidence 489999998765443
No 73
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=26.38 E-value=56 Score=19.13 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=11.9
Q ss_pred ccccCCcchHHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRRY 21 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~ 21 (88)
-+|.||+.....-+-+.
T Consensus 46 ~vC~dP~~~WVq~~i~~ 62 (70)
T 1ha6_A 46 SVCADPKQNWVKRAVNL 62 (70)
T ss_dssp SEEECTTSHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHH
Confidence 48999998866544333
No 74
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=25.71 E-value=43 Score=26.74 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=28.0
Q ss_pred HHhcCccchhhhHHHHHHHhCCCHHHHHHHHhh
Q psy2245 46 YFLTDPVNAQGHLTALLSILGYSDAQKENIMKT 78 (88)
Q Consensus 46 ~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~ 78 (88)
.+|.+|.+.++.-.||..+|..+++||+.-++.
T Consensus 417 allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~ 449 (496)
T 3t5t_A 417 CRSVNPFDLVEQAEAISAALAAGPRQRAEAAAR 449 (496)
T ss_dssp SEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367799999999999999999999998876543
No 75
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=25.51 E-value=38 Score=23.05 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.1
Q ss_pred HHHHHHhCCCHHHHHHHHhhhh----hcccccc
Q psy2245 59 TALLSILGYSDAQKENIMKTQA----HAWKYSY 87 (88)
Q Consensus 59 tAI~sIL~FSp~Ek~~V~k~~~----~~Ww~~~ 87 (88)
+|+..=||||++|-+-|.++.. .+|-|.|
T Consensus 61 ~a~~~~l~ft~~qe~li~~L~~igk~agLN~vY 93 (103)
T 2bl8_A 61 TAYTNKIRFTEYQEELIRNLSEIGRTAGINGLY 93 (103)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHSCTTTSSCC
T ss_pred HHHHccCCCChHHHHHHHHHHHHHhhcCcceee
Confidence 5777779999999998887765 5565554
No 76
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=25.50 E-value=47 Score=17.46 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHH------HhcCccchhhhH-HHHHHHhCCCHHHH
Q psy2245 33 AEMTLQFLKSAIFY------FLTDPVNAQGHL-TALLSILGYSDAQK 72 (88)
Q Consensus 33 ~EanLefLKnaIy~------fLTD~~~~q~hL-tAI~sIL~FSp~Ek 72 (88)
.|..++.++.+ +. +++|+.++--.. .|...++|+|++|-
T Consensus 8 ~e~~~~~~~~~-~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el 53 (118)
T 3olo_A 8 SELEFKFAHYL-INNAVEASFCLGDNWQFLYVNDATCRMTEYSREQL 53 (118)
T ss_dssp HHHHHHHHHHH-HHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHH-HhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHH
Confidence 35555555533 22 234665543222 47889999999874
No 77
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=25.48 E-value=82 Score=23.44 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=27.6
Q ss_pred ccccCCcchHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSA 43 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~~~~~~~k~~~D~EanLefLKna 43 (88)
.||-+|+.-.-...+-+.++-.+....+.|.+-+|+++.
T Consensus 325 YvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 363 (374)
T 1ddg_A 325 YVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 363 (374)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 578877766666666666766666777788888888763
No 78
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Probab=25.46 E-value=62 Score=23.30 Aligned_cols=45 Identities=7% Similarity=-0.111 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhc-CccchhhhHHH
Q psy2245 14 LIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLT-DPVNAQGHLTA 60 (88)
Q Consensus 14 ~~~~~~r~~~~~~~k~~~D~EanLefLKnaIy~fLT-D~~~~q~hLtA 60 (88)
+..+-+++++.+.. -+.-.....|+-.++.+||. +...-..||++
T Consensus 259 v~~~v~~lR~qR~~--~Vqt~~Qy~fiy~~ll~~l~~~~~~l~~~l~~ 304 (306)
T 3m4u_A 259 VYSIVAAMKQKRFG--MVQRLEQYAVIYMTVLGRLGVDISGLVSTLNL 304 (306)
T ss_dssp HHHHHHHHHHHSTT--SSCSHHHHHHHHHHHHHHTTCCCHHHHCC---
T ss_pred HHHHHHHHHhcCcc--ccCCHHHHHHHHHHHHHHHccchHHHHhhhcc
Confidence 55555555554432 34455678999999999997 66666666664
No 79
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=25.40 E-value=1.1e+02 Score=17.95 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhhhcc
Q psy2245 34 EMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAW 83 (88)
Q Consensus 34 EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~~~W 83 (88)
...++-|++.++....++--.......|..-||.|+.+.++=-..+...|
T Consensus 10 ~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~ 59 (87)
T 1b72_B 10 KQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 59 (87)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 45688888876554666655667778899999999998777554444333
No 80
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=25.33 E-value=47 Score=25.72 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=35.0
Q ss_pred CCChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHH
Q psy2245 30 PNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76 (88)
Q Consensus 30 ~~D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~ 76 (88)
..+|+..+++|.+.+=.|..++.-+.+-|+|+.-+.-..|+.+..|.
T Consensus 504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~ 550 (618)
T 1w63_A 504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIK 550 (618)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence 35778888999986656667888899999999888776665554443
No 81
>1lv9_A Small inducible cytokine B10; chemokine; HET: MLE; NMR {Synthetic} SCOP: d.9.1.1 PDB: 1o7y_A 1o7z_A 1o80_A
Probab=25.13 E-value=28 Score=20.99 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=11.8
Q ss_pred ccccCCcchHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRR 20 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r 20 (88)
-||.||+.....-+-+
T Consensus 51 ~vC~dP~~~WVq~~ik 66 (77)
T 1lv9_A 51 KRCLNPESKAIKNLLK 66 (77)
T ss_dssp EEEECCCSSTHHHHHH
T ss_pred eEccCCchHHHHHHHH
Confidence 4899999987655433
No 82
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.93 E-value=86 Score=16.98 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=17.5
Q ss_pred CccchhhhHHHHHHHhCCCHHHHHHHHhh
Q psy2245 50 DPVNAQGHLTALLSILGYSDAQKENIMKT 78 (88)
Q Consensus 50 D~~~~q~hLtAI~sIL~FSp~Ek~~V~k~ 78 (88)
|+...++.+.-++. +||+.++-...+++
T Consensus 5 ~~~~~~~~v~~L~~-MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 5 SSGVNQQQLQQLMD-MGFTREHAMEALLN 32 (47)
T ss_dssp CCSSCHHHHHHHHH-HHCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 44444566666665 79998766555543
No 83
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=24.80 E-value=66 Score=20.54 Aligned_cols=55 Identities=7% Similarity=-0.147 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCCCChh--hHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAE--MTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~E--anLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
.+..|+.++++.+ ...| ..+-.=++.|..++.......++|..|...|+.|++.-
T Consensus 9 ~~~~rl~~~r~~~--tq~elA~~~Gis~~~i~~~e~g~~~p~~~l~~ia~~~~v~~~~l 65 (189)
T 2fjr_A 9 DVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWL 65 (189)
T ss_dssp HHHHHHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSSSCCHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhhc--CHHHHHHHhCcCHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHH
Confidence 3567888888776 2222 12222367788888743322678999999999998754
No 84
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=24.74 E-value=1.4e+02 Score=19.04 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=37.1
Q ss_pred ChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 32 DAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 32 D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
=|+.+.+.|++-++..+..|--...--..|...+|.|+.+.++=-..+.
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR 60 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINAR 60 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3667888999999887776665666677799999999988777444333
No 85
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=24.22 E-value=1.1e+02 Score=17.46 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 34 EMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 34 EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
...++-|+..++....++--.......|...+|.|+.+.++=-..+.
T Consensus 10 ~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR 56 (73)
T 1puf_B 10 KQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKR 56 (73)
T ss_dssp HHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45688888887655666666677778899999999998776544443
No 86
>1icw_A Interleukin-8, IL-8; cytokine, chemokine; 2.01A {Homo sapiens} SCOP: d.9.1.1 PDB: 1ikl_A* 1ikm_A* 1il8_A 1ilp_A* 1ilq_A* 2il8_A 3il8_A 1qe6_A 1rod_A
Probab=24.08 E-value=67 Score=19.01 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=11.5
Q ss_pred ccccCCcchHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRR 20 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r 20 (88)
-||.||+....+-+-+
T Consensus 48 ~vC~dP~~~WVq~~ik 63 (72)
T 1icw_A 48 ELALDPKENWVQRVVE 63 (72)
T ss_dssp EEEECTTSHHHHHHHH
T ss_pred EEecCCchHHHHHHHH
Confidence 4899999886654433
No 87
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=23.79 E-value=46 Score=22.01 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 16 RHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 16 ~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
.+..|+.++++.++....|.+ +..=++.|..++.. ..-...+|..|...|+.|+++
T Consensus 17 ~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~~~~ 75 (236)
T 3bdn_A 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEE 75 (236)
T ss_dssp HHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHH
Confidence 578899999999888766643 23347788888884 333467888999999988743
No 88
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=23.36 E-value=21 Score=19.68 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=10.6
Q ss_pred HHHHHhCCCHHHH
Q psy2245 60 ALLSILGYSDAQK 72 (88)
Q Consensus 60 AI~sIL~FSp~Ek 72 (88)
|...+||++|+|-
T Consensus 30 ~~~~~~G~~~~el 42 (121)
T 3f1p_B 30 RCVATVGYQPQEL 42 (121)
T ss_dssp THHHHHSCCGGGT
T ss_pred chhhhhCCChHHH
Confidence 6788999998873
No 89
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=23.01 E-value=2.2e+02 Score=20.72 Aligned_cols=60 Identities=13% Similarity=-0.030 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhc--CccchhhhHHHHHHHhCCCHHHHHHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLT--DPVNAQGHLTALLSILGYSDAQKENIM 76 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~EanLefLKnaIy~fLT--D~~~~q~hLtAI~sIL~FSp~Ek~~V~ 76 (88)
.+.+-|+.++.-.|.. |+|.--.++.|+... .+ +.++.-.-......-||.|++|.....
T Consensus 54 l~~f~r~~A~i~ak~~-d~e~rr~l~~ni~~e-eg~~~~~~hiel~~~fa~alGis~eel~~~~ 115 (258)
T 3hlx_A 54 QTTIPLKDAAIMANCP-DAQTRRKWVQRILDH-DGSHGEDGGIEAWLRLGEAVGLSRDDLLSER 115 (258)
T ss_dssp HHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHH-HCSSSSCHHHHHHHHHHHHTTCCHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH-hcccCCccHHHHHHHHHHHcCCCHHHHhhCC
Confidence 3467788888777775 999888888886663 32 233333445556778999999987643
No 90
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=22.67 E-value=58 Score=18.68 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.8
Q ss_pred cchhhhHHHHHHHhCCCHHHH
Q psy2245 52 VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 52 ~~~q~hLtAI~sIL~FSp~Ek 72 (88)
+-..+++++|+--+|.+.+|=
T Consensus 47 ei~~g~lk~Ilkqagl~~eef 67 (70)
T 1whz_A 47 ELPKGTFKRILRDAGLTEEEF 67 (70)
T ss_dssp SCCHHHHHHHHHHTTCCHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHH
Confidence 456789999999999998874
No 91
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.49 E-value=1e+02 Score=20.09 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 58 LTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 58 LtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
+..|..++++|++|+..|....+
T Consensus 227 ~~~l~~~~~~~~~~~~~i~~~Na 249 (265)
T 2gzx_A 227 AEQIAELKGLSYEEVCEQTTKNA 249 (265)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 56677778999999999976655
No 92
>1dok_A MCP-1, MCAF, monocyte chemoattractant protein 1; cytokine,; 1.85A {Homo sapiens} SCOP: d.9.1.1 PDB: 1dol_A 1dom_A 1don_A 2bdn_A 3ifd_A 2nz1_D 1ml0_D 1bo0_A 1ncv_A
Probab=22.39 E-value=49 Score=19.87 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=11.9
Q ss_pred ccccCCcchHHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRRY 21 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~ 21 (88)
-+|.||+....+-+-+.
T Consensus 51 ~vCadP~~~WVq~~i~~ 67 (77)
T 1dok_A 51 EICADPKQKWVQDSMDH 67 (77)
T ss_dssp EEEECTTSHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHH
Confidence 48999999876544333
No 93
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.00 E-value=1e+02 Score=17.93 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCCCChh--hHHHHHHHHHHHHhcCc-cchhhhHHHHHHHhCCCHHHH
Q psy2245 19 RRYDALKDTKPPNDAE--MTLQFLKSAIFYFLTDP-VNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 19 ~r~~~~~~~k~~~D~E--anLefLKnaIy~fLTD~-~~~q~hLtAI~sIL~FSp~Ek 72 (88)
.++.+++..++....+ ..+..=++.|..+.... .-...++..|...|+.+++.-
T Consensus 21 ~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~~~l 77 (104)
T 3cec_A 21 EVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLW 77 (104)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCHHHH
Confidence 3444445544444444 22333467788888843 345789999999999998754
No 94
>1eig_A Eotaxin-2; chemokine, chemotactic cytokine, eosinophil chemoattractant; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1eih_A
Probab=21.86 E-value=80 Score=18.72 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=13.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKRRYDALK 25 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~r~~~~~ 25 (88)
-+|.||+....+-+-+..+.+
T Consensus 46 ~vC~dP~~~WVq~~ik~l~~~ 66 (73)
T 1eig_A 46 QSCGDPKQEWVQRYMKNLDAK 66 (73)
T ss_dssp CEEECTTSHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHHHHhh
Confidence 489999998765543333333
No 95
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=21.69 E-value=56 Score=19.79 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHh--CCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHH
Q psy2245 15 IRHKRRYDALKD--TKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQK 72 (88)
Q Consensus 15 ~~~~~r~~~~~~--~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek 72 (88)
..+-.|+.+++. .++....+.+ +..=++.|..+... ..-...+|..|..+|+.|++|+
T Consensus 33 ~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~e~ 95 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGA 95 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHhhh
Confidence 446678888888 7777665533 22235677778774 3345788999999999998875
No 96
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=21.64 E-value=55 Score=22.43 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=36.1
Q ss_pred CcccccCCcchHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCccchhhhHHHHHHH
Q psy2245 3 SGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDPVNAQGHLTALLSI 64 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~~~~q~hLtAI~sI 64 (88)
-+||+++-+...-+--+.+.++-+.. +|+.. --|.-.+.|+.+-|+......+..++.|
T Consensus 40 ~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 40 WCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35667665555556666666666542 34322 2255667777777888777777766655
No 97
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.42 E-value=68 Score=27.20 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=19.3
Q ss_pred hhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 56 GHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 56 ~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
+.+..-+.+||||++|+..|.+.=+
T Consensus 314 ~~~~~Am~~lG~~~~e~~~i~~ila 338 (784)
T 2v26_A 314 IRMCTAMKKIGLDDEEKLDLFRVVA 338 (784)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455567899999999999977544
No 98
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=21.35 E-value=47 Score=23.46 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=16.4
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCccc
Q psy2245 28 KPPNDAEMTLQFLKSAIFYFLTDPVN 53 (88)
Q Consensus 28 k~~~D~EanLefLKnaIy~fLTD~~~ 53 (88)
++.-+||++++||+ ||+++++
T Consensus 321 ~~sk~~e~A~~fl~-----~l~s~e~ 341 (490)
T 3a09_A 321 ATNKNPVETIKLFD-----FYFGPKG 341 (490)
T ss_dssp TTCSCHHHHHHHHH-----HTTSHHH
T ss_pred CCCCCHHHHHHHHH-----HhCCHHH
Confidence 44568999999997 7787775
No 99
>3zqo_A Terminase small subunit; DNA-binding protein, molecular motor, DNA packaging; 1.68A {Bacillus phage SF6} PDB: 3zqn_A 3zqm_A
Probab=21.32 E-value=60 Score=19.91 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHHH
Q psy2245 19 RRYDALKDTKPPNDAEMTLQFLKSAIFYF 47 (88)
Q Consensus 19 ~r~~~~~~~k~~~D~EanLefLKnaIy~f 47 (88)
.|+.+. +.+.+.|++-.|+||-++.-.=
T Consensus 9 erm~ei-~~~~Ia~~~EvLe~LT~iaRGe 36 (72)
T 3zqo_A 9 ARLKEI-NEKKILQANEVLEHLTRIALGQ 36 (72)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHH-HHhccCCHHHHHHHHHHHHcCC
Confidence 444444 4678999999999999987653
No 100
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.29 E-value=1.2e+02 Score=16.95 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhcCccc--hhhhHHHHHHHhCCCHHHHHHHHhh
Q psy2245 35 MTLQFLKSAIFYFLTDPVN--AQGHLTALLSILGYSDAQKENIMKT 78 (88)
Q Consensus 35 anLefLKnaIy~fLTD~~~--~q~hLtAI~sIL~FSp~Ek~~V~k~ 78 (88)
..++-|+.++-.|=.|..| ...-|..++.-++++++|-..+.+.
T Consensus 24 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 24 EELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 4566677776666454443 2345677777889999988777653
No 101
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=21.12 E-value=60 Score=18.16 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=15.5
Q ss_pred cCccchhhhH-HHHHHHhCCCHHHH
Q psy2245 49 TDPVNAQGHL-TALLSILGYSDAQK 72 (88)
Q Consensus 49 TD~~~~q~hL-tAI~sIL~FSp~Ek 72 (88)
+|+.|+-... .|...++|+|++|-
T Consensus 32 ~d~~g~i~~~N~a~~~l~Gy~~~el 56 (130)
T 1d06_A 32 SATDGTIVSFNAAAVRQFGYAEEEV 56 (130)
T ss_dssp EETTSBEEEECHHHHHHHCCCHHHH
T ss_pred ECCCCeEEEEcHHHHHHHCCCHHHH
Confidence 4655432222 46788999999884
No 102
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=21.08 E-value=1e+02 Score=19.77 Aligned_cols=57 Identities=11% Similarity=-0.039 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHH
Q psy2245 15 IRHKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 15 ~~~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~E 71 (88)
..+-.||.++++.++....+.+ +..=++.|..+... ..-.-..|..|...|+.++++
T Consensus 10 ~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~ 69 (192)
T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSA 69 (192)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 4567888899888887766633 22345667777773 344578899999999988654
No 103
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.03 E-value=1.1e+02 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=29.6
Q ss_pred CChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhC
Q psy2245 31 NDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILG 66 (88)
Q Consensus 31 ~D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~ 66 (88)
.|++...+.++.-+..||+-|...++-+.+|..++.
T Consensus 118 ~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 118 DTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 467777888888888899988888888888888875
No 104
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=21.02 E-value=71 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.334 Sum_probs=19.3
Q ss_pred hhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245 56 GHLTALLSILGYSDAQKENIMKTQA 80 (88)
Q Consensus 56 ~hLtAI~sIL~FSp~Ek~~V~k~~~ 80 (88)
+.+..-+.+||||++|+..|.+.=+
T Consensus 247 ~~~~~Am~~lG~~~~e~~~i~~ila 271 (697)
T 1lkx_A 247 KIIVKAMETLGLKESDQNSIWRILA 271 (697)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455567899999999999977543
No 105
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=20.80 E-value=1.3e+02 Score=19.36 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=36.4
Q ss_pred HHHHHhCCCCCChhhHH--HHHHHHHHHHhcC-ccchhhhHHHHHHHhCCCHHHHHHH
Q psy2245 21 YDALKDTKPPNDAEMTL--QFLKSAIFYFLTD-PVNAQGHLTALLSILGYSDAQKENI 75 (88)
Q Consensus 21 ~~~~~~~k~~~D~EanL--efLKnaIy~fLTD-~~~~q~hLtAI~sIL~FSp~Ek~~V 75 (88)
+.+++..++....|.+- --=++.|.++... ..-...+|..|...||.++++--..
T Consensus 73 L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~l~~~ 130 (141)
T 3kxa_A 73 FVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAA 130 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHHHH
Confidence 44456666666555332 2235778888873 3456789999999999999875443
No 106
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=20.73 E-value=22 Score=24.40 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCCChhhHHHHHHHHHHHHhcCccch------hhhHHH----------HHHHh--------CCCHHHHHHHHhh
Q psy2245 29 PPNDAEMTLQFLKSAIFYFLTDPVNA------QGHLTA----------LLSIL--------GYSDAQKENIMKT 78 (88)
Q Consensus 29 ~~~D~EanLefLKnaIy~fLTD~~~~------q~hLtA----------I~sIL--------~FSp~Ek~~V~k~ 78 (88)
=-.|+|.+.|+||+.+|-=+|+-+=+ .+-|+. +.+.| |||+++-+++.|.
T Consensus 24 y~~~~~Itee~L~~~lypdvt~eef~~~~~K~~~lik~i~~admd~nqleafLt~qtkkq~gls~eQa~~~~KF 97 (108)
T 2h2m_A 24 FHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKF 97 (108)
T ss_dssp SSCCSSCCHHHHHHHHCSSSCSSTHHHHHTTTSTTHHHHTTTCCCTTTSTTTHHHHTTSSSCCCHHHHHHHTTT
T ss_pred HcCCccccHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34688899999999998666533221 222222 23344 4999998888553
No 107
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=20.72 E-value=66 Score=24.17 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhc---Cccc--hhhhHHHHHHHhCCCHHH
Q psy2245 36 TLQFLKSAIFYFLT---DPVN--AQGHLTALLSILGYSDAQ 71 (88)
Q Consensus 36 nLefLKnaIy~fLT---D~~~--~q~hLtAI~sIL~FSp~E 71 (88)
=|++||+++..|.| |..- .+.+=+.+.++|+|.++.
T Consensus 218 RL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~~ll~~dve~ 258 (287)
T 3g9g_A 218 RLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEPQS 258 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 37899999999998 3221 223344577788998864
No 108
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=20.36 E-value=1.7e+02 Score=18.29 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHHHHhcCccc-------hhhhHHHHHHHhCCCHHHHH
Q psy2245 13 NLIRHKRRYDALKDTKPPNDAEMTL--QFLKSAIFYFLTDPVN-------AQGHLTALLSILGYSDAQKE 73 (88)
Q Consensus 13 ~~~~~~~r~~~~~~~k~~~D~EanL--efLKnaIy~fLTD~~~-------~q~hLtAI~sIL~FSp~Ek~ 73 (88)
.+..+-.+|.+++..++....+.+- ..=++.|-.+=.+..+ ..+.|..|...|+.++++--
T Consensus 4 ~~~~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~~L~ 73 (112)
T 2wus_R 4 KWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEML 73 (112)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHHHHH
Confidence 3456778899999998887666321 1112333333333221 35789999999999998754
No 109
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=20.20 E-value=1.1e+02 Score=17.90 Aligned_cols=63 Identities=8% Similarity=0.104 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCChhhH--HHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhh
Q psy2245 17 HKRRYDALKDTKPPNDAEMT--LQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQ 79 (88)
Q Consensus 17 ~~~r~~~~~~~k~~~D~Ean--LefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~ 79 (88)
+-.|+.+++..++....+.+ +..=++.|..+-.....-...+.+|..+|+.++++.-.+....
T Consensus 31 ~~~~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~~~~l~~~l~~~~~~l~~~~~~~ 95 (99)
T 2ppx_A 31 RMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGTAAALRKG 95 (99)
T ss_dssp -CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHHCHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHCcCHHHHHHHHHcc
Confidence 34567777777776655532 2233566777777332222227899999999999877665543
No 110
>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 3ona_B 1b2t_A
Probab=20.12 E-value=50 Score=19.96 Aligned_cols=15 Identities=27% Similarity=0.749 Sum_probs=11.0
Q ss_pred ccccCCcchHHHHHH
Q psy2245 5 LVCTNPKHNLIRHKR 19 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (88)
-+|.||+...++-+-
T Consensus 48 ~vCadP~~~WVq~~i 62 (76)
T 1f2l_A 48 LFCADPKEQWVKDAM 62 (76)
T ss_dssp EEEECTTSHHHHHHH
T ss_pred EEeCCCChHHHHHHH
Confidence 389999988665443
Done!