RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2245
(88 letters)
>gnl|CDD|216516 pfam01465, GRIP, GRIP domain. The GRIP (golgin-97,
RanBP2alpha,Imh1p and p230/golgin-245) domain is found
in many large coiled-coil proteins. It has been shown
to be sufficient for targeting to the Golgi. The GRIP
domain contains a completely conserved tyrosine
residue. At least some of these domains have been shown
to bind to GTPase Arl1, see structures in.
Length = 45
Score = 30.5 bits (70), Expect = 0.014
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 36 TLQFLKSAIFYFLT--DPVNAQGHLTALLSILGYSDAQKENIM 76
L++LK+ + FL + + L + ++L +S +K+ I+
Sbjct: 3 NLEYLKNVLLQFLESKESRGREQLLPVISTLLKFSPEEKQKIL 45
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Vibrio cholerae NorM. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. This subfamily includes Vibrio cholerae NorM
and functions most likely as a multidrug efflux pump,
removing xenobiotics from the interior of the cell. The
pump utilizes a cation gradient across the membrane to
facilitate the export process. NorM appears to bind
monovalent cations in an outward-facing conformation and
may subsequently cycle through an inward-facing and
outward-facing conformation to capture and release its
substrate.
Length = 435
Score = 27.5 bits (62), Expect = 0.70
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 27 TKPPNDAEMTLQFLKSAIFYFLTDPVN--AQGHL--------TALLSILGY 67
T P + L A + L D + A G L LL+++ Y
Sbjct: 338 TNDPAVIALAASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISY 388
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 373
Score = 27.6 bits (62), Expect = 0.81
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 14 LIRH---KRRYDALKD--TKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYS 68
L+RH R DAL P D + +A L D A+ + L+SI G S
Sbjct: 165 LLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAA----LADEAAARALVEDLMSIAGIS 220
>gnl|CDD|233213 TIGR00966, 3a0501s07, protein-export membrane protein SecF. This
bacterial protein is always found with the homologous
protein-export membrane protein SecD. In numerous
lineages, this protein occurs as a SecDF fusion protein
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 246
Score = 26.1 bits (58), Expect = 2.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 32 DAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYS--------DAQKENIMKT 78
D +T+ ++F + + ALL+I+GYS D +EN+ K
Sbjct: 134 DVIITVGVY--SLFGIEVNL----TTVAALLTIIGYSINDTVVVFDRIRENLRKY 182
>gnl|CDD|237275 PRK13022, secF, preprotein translocase subunit SecF; Reviewed.
Length = 289
Score = 25.5 bits (57), Expect = 3.5
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 58 LTALLSILGYS 68
+ ALL+I+GYS
Sbjct: 183 IAALLTIIGYS 193
>gnl|CDD|217245 pfam02828, L27, L27 domain. The L27 domain is found in receptor
targeting proteins Lin-2 and Lin-7.
Length = 51
Score = 24.5 bits (54), Expect = 3.5
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 17 HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSI 64
+R + L++ + +A L L+ L P HL +LL +
Sbjct: 2 VQRALELLEELQSLLEASEDLAELRK----VLQSP-----HLQSLLEV 40
>gnl|CDD|222353 pfam13735, tRNA_NucTran2_2, tRNA nucleotidyltransferase domain 2
putative.
Length = 149
Score = 25.3 bits (56), Expect = 3.8
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 59 TALLSILGYSDAQKENIMKTQAHAWKYS 86
LL +LG Q + +K AWK S
Sbjct: 11 ALLLLLLGLDPQQARSFLK----AWKTS 34
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
Provisional.
Length = 915
Score = 25.7 bits (56), Expect = 4.2
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 24 LKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQ 79
L P DA +Q +KS+ F L DP + L + + Q+ N M Q
Sbjct: 788 LSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQ 843
>gnl|CDD|222234 pfam13575, DUF4135, Domain of unknown function (DUF4135). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and archaea, and is
approximately 380 amino acids in length. The family is
found in association with pfam05147. This domain may be
involved in synthesis of a lantibiotic compound.
Length = 369
Score = 25.3 bits (56), Expect = 4.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 55 QGHLTALLSILGYSDAQKENIM 76
G L ALL +LG +D EN++
Sbjct: 138 AGALLALLYLLGGTDLHFENLI 159
>gnl|CDD|218099 pfam04465, DUF499, Protein of unknown function (DUF499). Family of
uncharacterized hypothetical prokaryotic proteins.
Length = 1025
Score = 25.2 bits (55), Expect = 6.0
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 5 LVCTNPKHNLIRHKRRYDALKD 26
++ +NP+ +IR++R +A+KD
Sbjct: 667 VILSNPRLPMIRYERLIEAIKD 688
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 24.7 bits (54), Expect = 7.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 10 PKHNLIRHKR--RYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQG 56
P+H ++R R+ A + K PND E + ++ F +P N G
Sbjct: 83 PRHTYGEYERVARFFAARIIKGPNDPEKLEELVERNSVVFFCNPNNPDG 131
>gnl|CDD|130367 TIGR01300, CPA3_mnhG_phaG, monovalent cation/proton antiporter,
MnhG/PhaG subunit. This model represents a subfamily
of small, transmembrane proteins believed to be
components of Na+/H+ and K+/H+ antiporters. Members,
including proteins designated MnhG from Staphylococcus
aureus and PhaG from Rhizobium meliloti, show some
similarity to chain L of the NADH dehydrogenase I,
which also translocates protons [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 97
Score = 24.2 bits (53), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 28 KPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTA 60
D ++++ L A+F LT+PV A HL A
Sbjct: 49 ALVLDLAVSIKLLLIALFILLTNPVGA--HLLA 79
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 24.3 bits (54), Expect = 9.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 54 AQGHLTALLSI-----LGYS-DAQ--KENIMKT 78
G+LT LL++ L Y+ D Q KE +
Sbjct: 301 VYGNLTGLLTVMKGLPLAYNRDLQEDKEPLFDA 333
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.404
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,351,194
Number of extensions: 332920
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 20
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)