RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2245
         (88 letters)



>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
           (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 137

 Score = 23.5 bits (50), Expect = 3.8
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 31  NDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKEN 74
              +  ++ +K   + FLT P   +     +   + +   +KEN
Sbjct: 82  GTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKEN 125


>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId:
          10665]}
          Length = 169

 Score = 23.1 bits (49), Expect = 5.3
 Identities = 4/35 (11%), Positives = 11/35 (31%)

Query: 5  LVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQF 39
          ++C +   +    +      K  +     E T  +
Sbjct: 56 VLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDW 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,097
Number of extensions: 11009
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)