BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2248
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1
Length = 432
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)
Query: 6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
LSQ+QQ+ +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168
Query: 58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
RE+LR + T+E AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206
>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2
Length = 432
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)
Query: 6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
LSQ+QQ+ +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168
Query: 58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
RE+LR + T+E AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206
>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1
Length = 432
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)
Query: 6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
LSQ+QQ+ +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168
Query: 58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
RE+LR + T+E AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206
>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1
Length = 432
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)
Query: 6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
LSQ+QQ+ +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168
Query: 58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
RE+LR + T+E AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206
>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1
Length = 360
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 13 ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQ 72
E +IT L KI L+ +AE +G EG + +AQ LM D+LK ++ L K
Sbjct: 144 EQNSKITELDLKIQELLKKAEELGEEGQITEAQALMTEADELKNQKVELEK--------- 194
Query: 73 TVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
+E + K+M VC +CGA L VGD +
Sbjct: 195 -IEQEKNENKRMSVCEICGALLFVGDKE 221
>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2
PE=1 SV=2
Length = 392
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 1 VGPSRLSQSQQN------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
V RL+++Q+ AE++ L+E+I L+++ E++G EG+VE++Q +M D++
Sbjct: 103 VAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVM---DEV 159
Query: 55 KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
++ R +K+ + ++ ++ Q++++ VC VC A+L + D
Sbjct: 160 EKAR--AKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201
>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2
PE=1 SV=1
Length = 392
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 1 VGPSRLSQSQQN------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
V RL+++Q+ AE++ L+E+I L+++ E++G EG+VE++Q +M D++
Sbjct: 103 VSKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVM---DEV 159
Query: 55 KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
++ R +K+ + ++ ++ Q++++ VC VC A+L + D
Sbjct: 160 EKAR--AKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201
>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L
PE=1 SV=1
Length = 371
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 1 VGPSRLSQSQQ------NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
+ RL+++Q+ + AE++ L+E+I L+++AE++G EG+V+++Q ++ +
Sbjct: 103 LAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKIL-----M 157
Query: 55 KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
+ E+ +K+ + ++ ++ Q++++ VC VC A+L + D
Sbjct: 158 EVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201
>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l
PE=2 SV=2
Length = 371
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 1 VGPSRLSQSQQ------NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
+ RL+++Q+ + AE++ L+E+I L+++AE++G EG+V+++Q ++ +
Sbjct: 103 LAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKIL-----M 157
Query: 55 KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
+ E+ +K+ + ++ ++ Q++++ VC VC A+L + D
Sbjct: 158 EVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201
>sp|Q09217|YP68_CAEEL Uncharacterized protein B0495.8 OS=Caenorhabditis elegans
GN=B0495.8 PE=2 SV=1
Length = 313
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 12 NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWS 71
+ A+Q+ + EKI V + E++G EG +E++ L K ++L RE +++ D+
Sbjct: 120 DSKAKQVAEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEEL---REKIQEIEDSQTEV 176
Query: 72 QTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
+T + K + VC CGA L + D +S
Sbjct: 177 KTAGPGSNSAK-LRVCEDCGAQLNITDHES 205
>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2
Length = 3210
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 12/46 (26%)
Query: 42 EKAQGLMKL----CDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQ 83
E+AQG MKL C QL+EE+E+L+K+ SQ L AAQEKQ
Sbjct: 2885 ERAQGKMKLLIKSCKQLEEEKEILQKE-----LSQ---LQAAQEKQ 2922
>sp|A5E869|RS15_BRASB 30S ribosomal protein S15 OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=rpsO PE=3 SV=1
Length = 89
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 17 QITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVE 75
Q+ +LSE+INNL S + G + + GL+KL + + L K+ND + +E
Sbjct: 28 QVAILSERINNLTSHFKTHGKDNHSRR--GLLKLVSTRRSLLDYL-KKNDEARYKALLE 83
>sp|Q00963|SPTCB_DROME Spectrin beta chain OS=Drosophila melanogaster GN=beta-Spec PE=1
SV=2
Length = 2291
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 42 EKAQGLMKLCDQLKEERE------MLRKQNDNNHWSQTVELAAAQEKQMEVC 87
E+ Q ++ +CD+L+ ER +LRK N W+ +EL A+ ++E+
Sbjct: 472 ERVQAVVAVCDELESERYHDVKRILLRKDNVMRLWTYLLELLRARRMRLEIS 523
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 40 SVEKAQGLMKLCDQLKEEREMLRKQNDNNH 69
S EK GL K+CD+L+EE ++ R NN+
Sbjct: 623 SKEKIVGLQKICDRLEEEGKISRVDPGNNY 652
>sp|Q73H99|RS14_WOLPM 30S ribosomal protein S14 OS=Wolbachia pipientis wMel GN=rpsN
PE=3 SV=1
Length = 102
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 41 VEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQME 85
+E+ +KLCDQ KE+RE L+ +N + S VE AQ K ++
Sbjct: 7 IERNLRRIKLCDQYKEKREKLKSIINNKNLS-IVERFTAQNKLIK 50
>sp|Q45550|HRCA_GEOSE Heat-inducible transcription repressor HrcA OS=Geobacillus
stearothermophilus GN=hrcA PE=3 SV=3
Length = 344
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 41 VEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQ---MEVCTVCGAFLIVG 97
++K + LMK+ +Q K+ +LRK N + +++ +E Q ME C++ A +G
Sbjct: 248 IQKIRPLMKMIEQEKDFYRLLRKHN-----RKGIQVTIGRENQLSEMENCSLITATYSIG 302
Query: 98 DAQ 100
D Q
Sbjct: 303 DEQ 305
>sp|Q6FKB1|SET1_CANGA Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SET1 PE=3 SV=1
Length = 1111
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 12 NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62
N+N E +++++I L E E+V ++ EK L K + KEE+ +L+
Sbjct: 388 NKNNELENIMNKRITVLSKETEKVKLQMEQEKKSALKKSAELNKEEKGILK 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,931,116
Number of Sequences: 539616
Number of extensions: 1003877
Number of successful extensions: 4262
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 4207
Number of HSP's gapped (non-prelim): 123
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)