Query psy2248
Match_columns 102
No_of_seqs 100 out of 240
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:55:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l8d_A DNA double-strand break 92.4 0.54 1.9E-05 30.0 6.6 12 84-95 47-58 (112)
2 1x0t_A Ribonuclease P protein 82.6 5.9 0.0002 25.9 6.8 65 19-100 17-81 (120)
3 1lq7_A Alpha3W; three helix bu 79.1 5.3 0.00018 23.4 4.9 23 21-43 7-29 (67)
4 3na7_A HP0958; flagellar bioge 77.4 8.2 0.00028 27.9 6.7 18 82-99 220-237 (256)
5 1gp8_A Protein (scaffolding pr 77.0 2.3 7.9E-05 23.1 2.7 32 23-54 8-39 (40)
6 2k3r_A Ribonuclease P protein 73.8 4 0.00014 26.9 3.9 64 20-100 13-76 (123)
7 3pwf_A Rubrerythrin; non heme 69.3 17 0.00057 25.0 6.4 17 30-46 89-105 (170)
8 2lf0_A Uncharacterized protein 69.0 17 0.00059 24.2 6.1 50 15-64 9-58 (123)
9 2aus_D NOP10, ribosome biogene 64.5 1.3 4.3E-05 26.3 -0.2 14 82-95 3-16 (60)
10 3pxg_A Negative regulator of g 64.1 16 0.00053 28.4 6.0 48 17-64 395-442 (468)
11 2r6a_C DNAG primase, helicase 63.7 24 0.00083 22.1 6.6 38 20-57 102-139 (143)
12 3u8p_A Cytochrome B562 integra 62.4 9 0.00031 29.8 4.2 29 30-58 116-144 (347)
13 1urq_A M-tomosyn isoform; tran 62.1 21 0.00072 20.8 7.4 60 2-63 1-60 (63)
14 1yuz_A Nigerythrin; rubrythrin 61.8 21 0.00073 25.1 5.9 10 83-92 170-179 (202)
15 2lw1_A ABC transporter ATP-bin 60.9 26 0.00088 21.4 8.2 51 14-64 20-78 (89)
16 3r8n_T 30S ribosomal protein S 58.2 30 0.001 21.4 5.7 37 19-55 20-56 (85)
17 2apo_B Ribosome biogenesis pro 57.8 2 6.7E-05 25.4 -0.2 13 82-94 4-16 (60)
18 1lq7_A Alpha3W; three helix bu 56.7 27 0.00092 20.3 5.2 35 18-52 27-61 (67)
19 2lvu_A Zinc finger and BTB dom 61.4 2.3 7.9E-05 18.6 0.0 11 85-95 3-13 (26)
20 6rxn_A Rubredoxin; electron tr 55.8 2.5 8.6E-05 23.5 0.1 11 85-95 31-41 (46)
21 2dq0_A Seryl-tRNA synthetase; 55.6 27 0.00092 27.6 6.1 48 15-64 44-91 (455)
22 1ard_A Yeast transcription fac 55.4 3.2 0.00011 18.2 0.4 9 85-93 3-11 (29)
23 1yzm_A FYVE-finger-containing 53.6 28 0.00097 19.7 6.9 42 21-62 7-48 (51)
24 3v1a_A Computational design, M 52.5 29 0.00099 19.4 6.5 39 21-59 6-44 (48)
25 1lko_A Rubrerythrin all-iron(I 52.5 54 0.0019 22.6 6.8 26 19-47 96-121 (191)
26 4rxn_A Rubredoxin; electron tr 51.6 3.2 0.00011 23.8 0.1 10 85-94 37-46 (54)
27 1e52_A Excinuclease ABC subuni 51.2 35 0.0012 20.0 5.2 38 20-57 21-58 (63)
28 2m0d_A Zinc finger and BTB dom 49.1 3.8 0.00013 18.0 0.1 11 84-94 3-13 (30)
29 3alr_A Nanos protein; zinc-fin 48.9 3.8 0.00013 26.8 0.1 9 85-93 72-80 (106)
30 2lvr_A Zinc finger and BTB dom 54.4 3.7 0.00013 18.2 0.0 11 85-95 4-14 (30)
31 2elr_A Zinc finger protein 406 48.6 4.6 0.00016 18.9 0.4 13 82-94 7-19 (36)
32 3qne_A Seryl-tRNA synthetase, 48.4 50 0.0017 26.5 6.6 46 16-63 47-92 (485)
33 1yk4_A Rubredoxin, RD; electro 48.3 3.9 0.00013 23.2 0.1 9 85-93 36-44 (52)
34 2jee_A YIIU; FTSZ, septum, coi 48.2 46 0.0016 20.5 6.3 23 17-39 7-36 (81)
35 1hcd_A Hisactophilin; actin bi 48.2 2.2 7.5E-05 27.8 -1.1 19 84-102 43-61 (118)
36 2kvh_A Zinc finger and BTB dom 47.9 3.7 0.00013 18.0 -0.1 10 84-93 3-12 (27)
37 1z0k_B FYVE-finger-containing 47.6 44 0.0015 20.1 6.8 41 21-61 25-65 (69)
38 2v3b_B Rubredoxin 2, rubredoxi 46.8 4.2 0.00014 23.3 0.0 9 85-93 37-45 (55)
39 2lvt_A Zinc finger and BTB dom 52.4 4.2 0.00014 18.0 0.0 10 85-94 3-12 (29)
40 1srk_A Zinc finger protein ZFP 46.1 3.9 0.00013 19.1 -0.2 14 82-95 5-18 (35)
41 2m0f_A Zinc finger and BTB dom 45.9 4.8 0.00016 17.5 0.2 9 85-93 3-11 (29)
42 2kvg_A Zinc finger and BTB dom 45.7 5.1 0.00017 17.7 0.2 10 84-93 3-12 (27)
43 2ra1_A Surface layer protein; 45.5 64 0.0022 25.6 6.6 35 20-54 168-202 (412)
44 2elo_A Zinc finger protein 406 44.8 5.8 0.0002 18.7 0.4 13 82-94 7-19 (37)
45 1e8j_A Rubredoxin; iron-sulfur 44.5 4.1 0.00014 23.1 -0.2 9 85-93 37-45 (52)
46 2hqh_E Restin; beta/BETA struc 44.4 4.2 0.00014 20.2 -0.2 9 86-94 5-13 (26)
47 2kn9_A Rubredoxin; metalloprot 44.2 4.8 0.00017 25.0 0.0 9 85-93 61-69 (81)
48 1dx8_A Rubredoxin; electron tr 43.7 5.1 0.00017 24.1 0.1 9 85-93 41-49 (70)
49 3n71_A Histone lysine methyltr 43.7 53 0.0018 25.8 6.0 40 16-55 300-339 (490)
50 2vkj_A TM1634; membrane protei 43.6 63 0.0021 20.7 5.4 32 23-54 51-82 (106)
51 2els_A Zinc finger protein 406 43.5 4 0.00014 19.3 -0.4 12 82-93 7-18 (36)
52 3frt_A Charged multivesicular 43.2 89 0.003 22.4 7.7 53 11-63 23-75 (218)
53 2m0e_A Zinc finger and BTB dom 43.1 5.3 0.00018 17.3 0.1 9 85-93 3-11 (29)
54 2yy0_A C-MYC-binding protein; 42.9 44 0.0015 18.8 4.4 27 10-36 20-46 (53)
55 1rik_A E6APC1 peptide; E6-bind 42.8 4.9 0.00017 17.6 -0.1 9 85-93 3-11 (29)
56 1p7a_A BF3, BKLF, kruppel-like 42.8 6.4 0.00022 18.5 0.4 12 82-93 9-20 (37)
57 1z0j_B FYVE-finger-containing 42.2 50 0.0017 19.2 6.4 43 20-62 13-55 (59)
58 2cp9_A EF-TS, EF-TSMT, elongat 42.1 27 0.00093 20.5 3.2 34 16-49 11-46 (64)
59 2kfq_A FP1; protein, de novo p 41.2 6 0.00021 18.3 0.1 11 85-95 3-13 (32)
60 1znf_A 31ST zinc finger from X 41.1 5.8 0.0002 17.1 0.0 9 85-93 2-10 (27)
61 1klr_A Zinc finger Y-chromosom 40.6 6.4 0.00022 17.1 0.2 10 85-94 3-12 (30)
62 2spc_A Spectrin; cytoskeleton; 40.3 59 0.002 19.5 6.7 50 14-64 48-97 (107)
63 2elt_A Zinc finger protein 406 40.1 5.6 0.00019 18.6 -0.1 12 82-93 7-18 (36)
64 1rim_A E6APC2 peptide; E6-bind 39.9 6.5 0.00022 18.4 0.1 10 85-94 3-12 (33)
65 2elx_A Zinc finger protein 406 39.5 5.7 0.00019 18.3 -0.1 12 83-94 6-17 (35)
66 2exu_A Transcription initiatio 39.5 7.5 0.00026 27.9 0.4 17 85-102 22-38 (200)
67 1njq_A Superman protein; zinc- 39.5 6.8 0.00023 18.9 0.1 12 83-94 5-16 (39)
68 1paa_A Yeast transcription fac 39.4 8 0.00027 17.0 0.4 9 85-93 3-11 (30)
69 2lj9_A CP12 domain-containing 39.1 6.4 0.00022 25.4 0.0 44 17-60 24-68 (99)
70 2elv_A Zinc finger protein 406 38.6 6 0.00021 18.6 -0.1 13 82-94 7-19 (36)
71 1x4t_A Hypothetical protein LO 38.5 23 0.00079 22.5 2.6 15 17-31 53-67 (92)
72 2fiy_A Protein FDHE homolog; F 38.0 5.8 0.0002 30.1 -0.4 18 82-99 251-268 (309)
73 2kvf_A Zinc finger and BTB dom 38.0 6.4 0.00022 17.2 -0.1 9 85-93 4-12 (28)
74 2elp_A Zinc finger protein 406 37.9 6.5 0.00022 18.6 -0.1 13 82-94 7-19 (37)
75 4b6x_A AVRRPS4, avirulence pro 37.8 73 0.0025 19.8 8.6 53 11-63 24-76 (90)
76 3iuf_A Zinc finger protein UBI 37.7 7.4 0.00025 20.1 0.1 10 83-92 6-15 (48)
77 3ulq_A Response regulator aspa 37.6 63 0.0022 22.9 5.2 34 22-55 9-42 (383)
78 3fb2_A Spectrin alpha chain, b 37.2 94 0.0032 20.9 7.0 50 14-64 164-213 (218)
79 1wle_A Seryl-tRNA synthetase; 36.9 1E+02 0.0035 24.7 6.8 47 17-63 85-137 (501)
80 2eoj_A Zinc finger protein 268 36.9 8.8 0.0003 18.8 0.4 12 82-93 10-21 (44)
81 1s24_A Rubredoxin 2; electron 36.8 6.5 0.00022 24.7 -0.2 7 86-92 70-76 (87)
82 2elq_A Zinc finger protein 406 36.8 6.8 0.00023 18.4 -0.1 13 82-94 7-19 (36)
83 1s35_A Beta-I spectrin, spectr 35.9 95 0.0032 20.6 7.3 50 14-64 152-201 (214)
84 2pzo_E CAP-Gly domain-containi 35.2 7.2 0.00025 21.4 -0.2 10 84-93 20-29 (42)
85 1w7p_D VPS36P, YLR417W; ESCRT- 35.2 8 0.00027 31.8 0.0 17 80-96 190-206 (566)
86 2en7_A Zinc finger protein 268 35.1 9.8 0.00033 18.6 0.3 12 82-93 10-21 (44)
87 2yte_A Zinc finger protein 473 35.0 10 0.00034 18.3 0.4 12 82-93 8-19 (42)
88 2k4x_A 30S ribosomal protein S 34.7 10 0.00034 21.6 0.4 14 81-94 15-28 (55)
89 1yui_A GAGA-factor; complex (D 34.2 9.1 0.00031 20.0 0.1 12 82-93 22-33 (54)
90 2vqe_T 30S ribosomal protein S 34.1 94 0.0032 20.0 7.2 36 19-54 27-62 (106)
91 3mhs_E SAGA-associated factor 33.7 7.3 0.00025 25.0 -0.4 14 83-96 74-87 (96)
92 2ytb_A Zinc finger protein 32; 33.6 12 0.0004 18.1 0.5 12 82-93 9-20 (42)
93 2elm_A Zinc finger protein 406 32.9 7.9 0.00027 18.5 -0.3 11 83-93 8-18 (37)
94 2emg_A Zinc finger protein 484 32.8 11 0.00039 18.6 0.4 13 82-94 10-22 (46)
95 2w0t_A Lethal(3)malignant brai 32.6 7.5 0.00026 21.4 -0.4 10 84-93 6-15 (43)
96 2eq1_A Zinc finger protein 347 32.5 12 0.00042 18.5 0.5 12 82-93 10-21 (46)
97 2eox_A Zinc finger protein 473 32.3 11 0.00038 18.5 0.3 12 82-93 10-21 (44)
98 2epv_A Zinc finger protein 268 32.1 8.9 0.0003 19.0 -0.1 13 82-94 10-22 (44)
99 2lo3_A SAGA-associated factor 31.9 7.3 0.00025 21.5 -0.5 15 82-96 15-29 (44)
100 2eou_A Zinc finger protein 473 31.7 12 0.00041 18.4 0.3 13 82-94 10-22 (44)
101 1nj3_A NPL4; NZF domain, rubre 31.5 8.2 0.00028 19.1 -0.3 13 82-94 18-30 (31)
102 2i5o_A DNA polymerase ETA; zin 31.2 8.1 0.00028 20.7 -0.4 14 84-97 9-22 (39)
103 2eoz_A Zinc finger protein 473 30.9 12 0.0004 18.7 0.2 12 82-93 10-21 (46)
104 2enh_A Zinc finger protein 28 30.8 13 0.00044 18.5 0.4 13 82-94 10-22 (46)
105 2eof_A Zinc finger protein 268 30.7 11 0.00038 18.4 0.1 12 82-93 10-21 (44)
106 2eq3_A Zinc finger protein 347 30.4 13 0.00044 18.4 0.4 13 82-94 10-22 (46)
107 1weo_A Cellulose synthase, cat 30.2 11 0.00037 24.0 0.0 15 83-97 15-29 (93)
108 2en2_A B-cell lymphoma 6 prote 30.2 12 0.0004 18.1 0.1 12 82-93 9-20 (42)
109 3r24_B Non-structural protein 30.2 12 0.0004 25.8 0.1 12 84-95 117-128 (155)
110 4b4t_Q 26S proteasome regulato 29.9 55 0.0019 23.3 3.8 27 27-53 6-32 (434)
111 2epr_A POZ-, at HOOK-, and zin 29.9 11 0.00038 19.1 0.0 10 82-91 38-47 (48)
112 2eos_A B-cell lymphoma 6 prote 29.6 12 0.00041 18.2 0.1 13 82-94 9-21 (42)
113 2ep1_A Zinc finger protein 484 29.5 12 0.0004 18.5 0.1 12 82-93 10-21 (46)
114 2eoh_A Zinc finger protein 28 29.2 12 0.00042 18.6 0.1 12 82-93 10-21 (46)
115 3h7h_A Transcription elongatio 28.9 15 0.00051 24.4 0.5 11 85-95 34-44 (120)
116 2en9_A Zinc finger protein 28 28.9 15 0.0005 18.3 0.4 12 82-93 10-21 (46)
117 3us6_A Histidine-containing ph 28.8 1E+02 0.0035 20.3 4.8 31 23-53 91-121 (153)
118 2enf_A Zinc finger protein 347 28.8 13 0.00043 18.5 0.1 12 82-93 10-21 (46)
119 3lay_A Zinc resistance-associa 28.6 1.5E+02 0.005 20.5 7.0 47 17-63 86-134 (175)
120 3j20_Y 30S ribosomal protein S 28.5 8.6 0.00029 21.5 -0.6 16 82-97 17-34 (50)
121 2l8e_A Polyhomeotic-like prote 28.3 12 0.00039 21.0 -0.1 14 83-96 17-30 (49)
122 2emi_A Zinc finger protein 484 28.2 11 0.00039 18.7 -0.1 12 82-93 10-21 (46)
123 3uo3_A J-type CO-chaperone JAC 28.2 1.4E+02 0.0049 20.3 8.5 44 19-62 128-171 (181)
124 1vd4_A Transcription initiatio 28.2 11 0.00036 20.6 -0.3 17 83-99 38-54 (62)
125 2epc_A Zinc finger protein 32; 28.1 11 0.00039 18.1 -0.1 13 82-94 9-21 (42)
126 2em3_A Zinc finger protein 28 28.1 11 0.00039 18.6 -0.1 12 82-93 10-21 (46)
127 2ep3_A Zinc finger protein 484 28.0 11 0.00039 18.6 -0.1 12 82-93 10-21 (46)
128 2en3_A ZFP-95, zinc finger pro 28.0 11 0.00039 18.6 -0.1 13 82-94 10-22 (46)
129 2eor_A Zinc finger protein 224 27.9 13 0.00046 18.3 0.1 13 82-94 10-22 (46)
130 2gd5_A Charged multivesicular 27.9 1.4E+02 0.0048 20.1 8.1 51 13-63 25-75 (179)
131 2eow_A Zinc finger protein 347 27.7 13 0.00044 18.4 0.0 12 82-93 10-21 (46)
132 2eq2_A Zinc finger protein 347 27.7 13 0.00046 18.4 0.1 12 82-93 10-21 (46)
133 2eon_A ZFP-95, zinc finger pro 27.6 14 0.00047 18.4 0.1 13 82-94 10-22 (46)
134 2eov_A Zinc finger protein 484 27.3 14 0.00048 18.2 0.1 12 82-93 10-21 (46)
135 2em4_A Zinc finger protein 28 27.3 12 0.00041 18.6 -0.1 12 82-93 10-21 (46)
136 2fyg_A Replicase polyprotein 1 27.2 14 0.00048 24.6 0.1 13 84-96 110-122 (128)
137 2el5_A Zinc finger protein 268 27.1 12 0.00042 18.1 -0.1 13 82-94 8-20 (42)
138 2emb_A Zinc finger protein 473 27.0 14 0.00048 18.1 0.1 12 82-93 10-21 (44)
139 2em6_A Zinc finger protein 224 26.7 15 0.0005 18.3 0.1 12 82-93 10-21 (46)
140 2yti_A Zinc finger protein 347 26.6 14 0.00048 18.3 0.1 12 82-93 10-21 (46)
141 2eom_A ZFP-95, zinc finger pro 26.5 14 0.00049 18.4 0.1 13 82-94 10-22 (46)
142 1dxg_A Desulforedoxin; non-hem 26.4 9.7 0.00033 19.7 -0.6 14 83-96 5-18 (36)
143 2ytr_A Zinc finger protein 347 26.3 17 0.00057 17.9 0.3 12 82-93 10-21 (46)
144 2eop_A Zinc finger protein 268 26.3 17 0.00059 17.8 0.4 12 82-93 10-21 (46)
145 2eoy_A Zinc finger protein 473 26.2 13 0.00045 18.5 -0.1 12 82-93 10-21 (46)
146 2epu_A Zinc finger protein 32; 26.2 16 0.00055 18.0 0.2 12 82-93 10-21 (45)
147 2yso_A ZFP-95, zinc finger pro 26.1 15 0.00051 18.2 0.1 13 82-94 10-22 (46)
148 2bai_A Genome polyprotein; zin 26.0 15 0.00051 18.8 0.1 15 84-98 16-30 (32)
149 2eoe_A Zinc finger protein 347 25.9 18 0.0006 17.8 0.4 12 82-93 10-21 (46)
150 3bbo_Y Ribosomal protein L28; 25.8 14 0.00048 25.5 -0.1 13 85-97 76-88 (151)
151 2emk_A Zinc finger protein 28 25.7 16 0.00054 18.1 0.1 12 82-93 10-21 (46)
152 2eoo_A ZFP-95, zinc finger pro 25.5 14 0.00048 18.4 -0.1 13 82-94 10-22 (46)
153 2en1_A Zinc finger protein 224 25.2 17 0.00058 17.9 0.2 12 82-93 10-21 (46)
154 2yts_A Zinc finger protein 484 25.2 14 0.00048 18.2 -0.1 12 82-93 10-21 (46)
155 2ysp_A Zinc finger protein 224 25.1 17 0.00059 17.9 0.2 12 82-93 10-21 (46)
156 2ytp_A Zinc finger protein 484 25.1 14 0.00048 18.4 -0.1 12 82-93 10-21 (46)
157 2yrj_A Zinc finger protein 473 25.1 14 0.00048 18.2 -0.1 12 82-93 10-21 (46)
158 2lv2_A Insulinoma-associated p 25.0 15 0.00053 22.0 0.0 13 81-93 25-37 (85)
159 2ept_A Zinc finger protein 32; 25.0 14 0.00048 17.8 -0.1 12 82-93 8-19 (41)
160 2emj_A Zinc finger protein 28 25.0 14 0.00049 18.3 -0.1 13 82-94 10-22 (46)
161 2emh_A Zinc finger protein 484 24.9 16 0.00056 18.0 0.1 12 82-93 10-21 (46)
162 2eml_A Zinc finger protein 28 24.9 14 0.00049 18.3 -0.1 12 82-93 10-21 (46)
163 2epz_A Zinc finger protein 28 24.8 19 0.00064 17.7 0.4 13 82-94 10-22 (46)
164 2ytj_A Zinc finger protein 484 24.8 14 0.00049 18.3 -0.1 13 82-94 10-22 (46)
165 1kbe_A Kinase suppressor of RA 24.7 14 0.00048 20.5 -0.2 12 84-95 14-25 (49)
166 2epx_A Zinc finger protein 28 24.7 17 0.00056 18.0 0.1 12 82-93 10-21 (47)
167 2ytg_A ZFP-95, zinc finger pro 24.6 17 0.00057 18.0 0.1 12 82-93 10-21 (46)
168 2ytm_A Zinc finger protein 28 24.6 21 0.00072 17.7 0.5 13 82-94 10-22 (46)
169 2yu5_A Zinc finger protein 473 24.4 15 0.00052 17.9 -0.1 13 82-94 10-22 (44)
170 2elz_A Zinc finger protein 224 24.4 17 0.00058 18.0 0.1 12 82-93 10-21 (46)
171 2yth_A Zinc finger protein 224 24.3 17 0.00059 18.0 0.1 12 82-93 10-21 (46)
172 2ytn_A Zinc finger protein 347 24.3 20 0.00068 17.7 0.4 12 82-93 10-21 (46)
173 2emp_A Zinc finger protein 347 24.3 15 0.00051 18.2 -0.1 12 82-93 10-21 (46)
174 2emy_A Zinc finger protein 268 24.1 15 0.00051 18.2 -0.1 12 82-93 10-21 (46)
175 3hho_A CO-chaperone protein HS 24.1 1.7E+02 0.0058 19.7 8.5 44 19-62 123-169 (174)
176 2yto_A Zinc finger protein 484 24.1 15 0.00051 18.2 -0.1 12 82-93 10-21 (46)
177 3edv_A Spectrin beta chain, br 24.0 1.9E+02 0.0066 20.3 6.8 50 14-64 264-313 (323)
178 2epq_A POZ-, at HOOK-, and zin 24.0 20 0.00068 17.6 0.4 13 82-94 8-20 (45)
179 2pm7_A Protein WEB1, protein t 23.9 1.6E+02 0.0054 22.7 5.6 40 26-65 337-380 (399)
180 2epw_A Zinc finger protein 268 23.9 15 0.00052 18.1 -0.1 12 82-93 10-21 (46)
181 2eme_A Zinc finger protein 473 23.8 15 0.00052 18.1 -0.1 12 82-93 10-21 (46)
182 2emx_A Zinc finger protein 268 23.8 16 0.00053 17.9 -0.1 12 82-93 8-19 (44)
183 1fv5_A First zinc finger of U- 23.8 21 0.00071 18.0 0.4 13 82-94 6-18 (36)
184 1jek_B ENV polyprotein; envelo 23.8 88 0.003 16.4 2.9 20 15-34 6-25 (36)
185 2eoq_A Zinc finger protein 224 23.8 18 0.0006 17.9 0.1 12 82-93 10-21 (46)
186 2eq4_A Zinc finger protein 224 23.7 23 0.00077 17.4 0.5 13 82-94 10-22 (46)
187 2ytf_A Zinc finger protein 268 23.7 15 0.00053 18.0 -0.1 12 82-93 10-21 (46)
188 2yrm_A B-cell lymphoma 6 prote 23.7 18 0.00061 17.7 0.1 13 82-94 8-20 (43)
189 2ely_A Zinc finger protein 224 23.7 18 0.00061 17.9 0.1 14 82-95 10-23 (46)
190 2emz_A ZFP-95, zinc finger pro 23.6 18 0.0006 17.9 0.1 13 82-94 10-22 (46)
191 3v2d_5 50S ribosomal protein L 23.5 16 0.00054 21.2 -0.1 10 84-93 43-52 (60)
192 2en6_A Zinc finger protein 268 23.3 20 0.00067 17.7 0.2 12 82-93 10-21 (46)
193 2yqp_A Probable ATP-dependent 23.3 15 0.0005 21.6 -0.3 9 85-93 20-28 (60)
194 2ytq_A Zinc finger protein 268 23.3 18 0.00063 17.8 0.1 12 82-93 10-21 (46)
195 2em5_A ZFP-95, zinc finger pro 23.1 16 0.00056 18.1 -0.1 12 82-93 10-21 (46)
196 2dq3_A Seryl-tRNA synthetase; 23.1 29 0.001 27.0 1.3 44 17-62 45-88 (425)
197 2el6_A Zinc finger protein 268 23.0 17 0.00057 18.0 -0.1 12 82-93 10-21 (46)
198 3edu_A Beta-I spectrin, spectr 23.0 1.8E+02 0.006 19.5 8.5 52 13-64 151-202 (218)
199 2em2_A Zinc finger protein 28 22.8 17 0.00056 18.0 -0.1 12 82-93 10-21 (46)
200 2emf_A Zinc finger protein 484 22.8 17 0.00057 18.0 -0.1 12 82-93 10-21 (46)
201 2en8_A Zinc finger protein 224 22.7 19 0.00065 17.7 0.1 12 82-93 10-21 (46)
202 2em0_A Zinc finger protein 224 22.7 19 0.00064 17.8 0.1 12 82-93 10-21 (46)
203 2eq0_A Zinc finger protein 347 22.6 19 0.00066 17.7 0.1 12 82-93 10-21 (46)
204 3urz_A Uncharacterized protein 22.5 1.6E+02 0.0056 19.0 4.9 32 24-55 3-34 (208)
205 1ses_A Seryl-tRNA synthetase; 22.4 1.9E+02 0.0066 22.3 5.9 23 42-64 64-86 (421)
206 2zjr_Z 50S ribosomal protein L 22.3 19 0.00066 20.8 0.1 10 84-93 43-52 (60)
207 2ep2_A Zinc finger protein 484 22.2 17 0.00059 17.9 -0.1 12 82-93 10-21 (46)
208 2ema_A Zinc finger protein 347 22.1 17 0.00059 17.9 -0.1 12 82-93 10-21 (46)
209 2yu8_A Zinc finger protein 347 22.0 17 0.0006 17.9 -0.2 12 82-93 10-21 (46)
210 4gzn_C ZFP-57, zinc finger pro 21.9 21 0.0007 19.9 0.1 8 85-92 5-12 (60)
211 2em9_A Zinc finger protein 224 21.8 18 0.00061 17.8 -0.1 12 82-93 10-21 (46)
212 2ene_A Zinc finger protein 347 21.6 18 0.00062 17.8 -0.1 12 82-93 10-21 (46)
213 2em8_A Zinc finger protein 224 21.5 18 0.00062 17.9 -0.1 12 82-93 10-21 (46)
214 2enc_A Zinc finger protein 224 21.5 18 0.00062 17.8 -0.1 13 82-94 10-22 (46)
215 2el4_A Zinc finger protein 268 21.5 19 0.00063 17.7 -0.1 12 82-93 10-21 (46)
216 2crb_A Nuclear receptor bindin 21.4 1.7E+02 0.0057 18.6 4.5 27 29-55 19-45 (97)
217 2em7_A Zinc finger protein 224 21.4 18 0.00063 17.8 -0.1 12 82-93 10-21 (46)
218 2adr_A ADR1; transcription reg 21.1 25 0.00085 18.3 0.4 8 85-92 3-10 (60)
219 3mq7_A Bone marrow stromal ant 21.0 1.4E+02 0.0047 19.7 4.1 22 43-64 86-107 (121)
220 3ga8_A HTH-type transcriptiona 20.8 21 0.00072 21.1 0.0 13 83-95 35-47 (78)
221 3ax2_A Mitochondrial import re 20.8 1.3E+02 0.0045 17.9 3.7 29 23-51 15-43 (73)
222 2emm_A ZFP-95, zinc finger pro 20.7 19 0.00066 17.7 -0.1 13 82-94 10-22 (46)
223 1pft_A TFIIB, PFTFIIBN; N-term 20.7 23 0.00077 19.1 0.1 8 85-92 6-13 (50)
224 2lt7_A Transcriptional regulat 20.6 19 0.00066 23.0 -0.2 13 81-93 19-31 (133)
225 2dfs_A Myosin-5A; myosin-V, in 20.6 2.6E+02 0.009 24.4 6.8 48 15-64 990-1038(1080)
226 2jvx_A NF-kappa-B essential mo 20.5 16 0.00055 18.2 -0.5 11 85-95 4-14 (28)
227 2e2a_A Protein (enzyme IIA); h 20.4 1.7E+02 0.0059 18.5 6.1 35 20-54 15-49 (105)
228 3q15_A PSP28, response regulat 20.4 2.1E+02 0.0071 20.1 5.4 33 22-54 9-41 (378)
229 1ptq_A Protein kinase C delta 20.3 19 0.00066 19.1 -0.2 13 83-95 10-22 (50)
230 2ytt_A Zinc finger protein 473 20.3 22 0.00076 17.5 0.1 13 82-94 10-22 (46)
231 3m9b_A Proteasome-associated A 20.3 1.7E+02 0.0058 21.6 4.9 40 24-63 55-96 (251)
232 2ytk_A Zinc finger protein 347 20.2 20 0.00069 17.6 -0.1 12 82-93 10-21 (46)
233 2odv_A Plectin 1, HD1; plakin 20.1 2.4E+02 0.0083 20.0 6.4 53 12-65 168-220 (235)
234 3lss_A Seryl-tRNA synthetase; 20.1 3.3E+02 0.011 21.6 7.1 21 43-63 100-125 (484)
235 1f5n_A Interferon-induced guan 20.0 3.5E+02 0.012 21.9 7.2 42 16-57 541-582 (592)
No 1
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=92.37 E-value=0.54 Score=29.95 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=9.2
Q ss_pred cccchhhhhhhh
Q psy2248 84 MEVCTVCGAFLI 95 (102)
Q Consensus 84 l~VCeVCGA~Ls 95 (102)
-.+|+|||.-+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 468999998654
No 2
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=82.57 E-value=5.9 Score=25.92 Aligned_cols=65 Identities=25% Similarity=0.389 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhccccchhhhhhhhccc
Q psy2248 19 TLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98 (102)
Q Consensus 19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D 98 (102)
....++|+-|..-|..+ ..++.+-|-.++.....+-.+ ..+ ...+.-+-.+|.-||.||+-+-
T Consensus 17 ~ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k-~~i---------------rlp~~~KR~~Ck~C~s~LiPG~ 79 (120)
T 1x0t_A 17 KIAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKK-AKV---------------KIPRKWKRRYCKRCHTFLIPGV 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH-HTC---------------CCCTTTTTSBCTTTCCBCCBTT
T ss_pred HHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-hcc---------------CCCHHHHHHhccCCCCEeECCC
Confidence 45577999999999988 678888888888777555321 111 1123456789999999999776
Q ss_pred cc
Q psy2248 99 AQ 100 (102)
Q Consensus 99 ~d 100 (102)
|-
T Consensus 80 t~ 81 (120)
T 1x0t_A 80 NA 81 (120)
T ss_dssp TE
T ss_pred ce
Confidence 53
No 3
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=79.14 E-value=5.3 Score=23.36 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHH
Q psy2248 21 LSEKINNLVSEAERVGMEGSVEK 43 (102)
Q Consensus 21 l~~~I~~ll~eaE~LGeeG~Vde 43 (102)
|++++..+-.++..||--|++++
T Consensus 7 leekvkaleekvkalggggriee 29 (67)
T 1lq7_A 7 LEEKVKALEEKVKALGGGGRIEE 29 (67)
T ss_dssp HHHHHHHHHHHHHHSCCSSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHH
Confidence 34444444444444444444443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.38 E-value=8.2 Score=27.94 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=14.0
Q ss_pred hccccchhhhhhhhcccc
Q psy2248 82 KQMEVCTVCGAFLIVGDA 99 (102)
Q Consensus 82 qkl~VCeVCGA~Ls~~D~ 99 (102)
.+.-.|+-||.+|...+.
T Consensus 220 ~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 220 GDMITCPYCGRILYAEGA 237 (256)
T ss_dssp SSCEECTTTCCEEECSCC
T ss_pred CCEEECCCCCeeEEeCcc
Confidence 466899999999887643
No 5
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.03 E-value=2.3 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2248 23 EKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54 (102)
Q Consensus 23 ~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 54 (102)
..|..+-+++..+-.+|+++.+-.|-.+++.|
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 45666668888999999999988876666543
No 6
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=73.81 E-value=4 Score=26.93 Aligned_cols=64 Identities=28% Similarity=0.385 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhccccchhhhhhhhcccc
Q psy2248 20 LLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDA 99 (102)
Q Consensus 20 ~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~ 99 (102)
.--++|+-|..-|..+ ..++.+-|-.++..+..+-.+ ..+ -..+.-+-..|.-||.||+-+-|
T Consensus 13 ia~~Ri~~L~~~A~~~-~~~~p~LSr~Y~~~~~~Is~K-~~i---------------rlp~~~KR~~Ck~C~s~LIPG~t 75 (123)
T 2k3r_A 13 IAKERIDILFSLAERV-FPYSPELAKRYVELALLVQQK-AKV---------------KIPRKWKRRYCKKCHAFLVPGIN 75 (123)
T ss_dssp --CHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHH-HTC---------------CCSSTTTTSBCTTTCCBCCBTTT
T ss_pred HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-hcc---------------CCCHHHHHHhccCCCCEeECCCc
Confidence 4467888899888888 556777777777666554321 111 11234567899999999997755
Q ss_pred c
Q psy2248 100 Q 100 (102)
Q Consensus 100 d 100 (102)
-
T Consensus 76 ~ 76 (123)
T 2k3r_A 76 A 76 (123)
T ss_dssp E
T ss_pred e
Confidence 3
No 7
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=69.34 E-value=17 Score=25.01 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHH
Q psy2248 30 SEAERVGMEGSVEKAQG 46 (102)
Q Consensus 30 ~eaE~LGeeG~VdeA~~ 46 (102)
.-++..-++|+-+-+..
T Consensus 89 ~~a~~A~eeg~~~~a~~ 105 (170)
T 3pwf_A 89 VYNKAAEFQGEKEAVRT 105 (170)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 44555566676655543
No 8
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=69.00 E-value=17 Score=24.19 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 15 AEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 15 ~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
..+|..|+.+++.+-.+...+-..|+.+---.+..+++.|..+...+...
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999988888653
No 9
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=64.48 E-value=1.3 Score=26.28 Aligned_cols=14 Identities=21% Similarity=0.795 Sum_probs=10.2
Q ss_pred hccccchhhhhhhh
Q psy2248 82 KQMEVCTVCGAFLI 95 (102)
Q Consensus 82 qkl~VCeVCGA~Ls 95 (102)
.+|++|..||.|-.
T Consensus 3 s~mr~C~~Cg~YTL 16 (60)
T 2aus_D 3 FRIRKCPKCGRYTL 16 (60)
T ss_dssp -CCEECTTTCCEES
T ss_pred ccceECCCCCCEEc
Confidence 36888999988744
No 10
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=64.08 E-value=16 Score=28.44 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 17 QITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 17 ~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
.|..+..+|..+..+.+.+...++++.|..+..+.+.|+.+.+.+...
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~ 442 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888999999999999999999988887765
No 11
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=63.73 E-value=24 Score=22.09 Aligned_cols=38 Identities=11% Similarity=-0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2248 20 LLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57 (102)
Q Consensus 20 ~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e 57 (102)
.+..++..+..++..++..|++++...+..++..++.+
T Consensus 102 ~~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~ 139 (143)
T 2r6a_C 102 PKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKM 139 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 34456666777777888899999999999888777654
No 12
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=62.36 E-value=9 Score=29.76 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy2248 30 SEAERVGMEGSVEKAQGLMKLCDQLKEER 58 (102)
Q Consensus 30 ~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek 58 (102)
..|-.|..+|++|+|.+.......+|.+-
T Consensus 116 D~a~~la~~g~l~eAkk~a~~~~~~r~~y 144 (347)
T 3u8p_A 116 DDALKLANEGKVKEAQAAAEQLKTTRNAY 144 (347)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHhhhccchHHHHHHHHHhHhHHHhh
Confidence 46778999999999999877766665543
No 13
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=62.07 E-value=21 Score=20.81 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 2 GPSRLSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 2 ~~~~~~~~~~~~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
||+......+....+-...+..=|+++++.-|.|.. -+|.+..+...+..++..-.+|..
T Consensus 1 ~~~~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~--L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 1 GSHGGIEGVKGAASGVVGELARARLALDERGQKLSD--LEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544445555555555666777777777777664 466677777777776655444443
No 14
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=61.77 E-value=21 Score=25.09 Aligned_cols=10 Identities=30% Similarity=1.195 Sum_probs=7.4
Q ss_pred ccccchhhhh
Q psy2248 83 QMEVCTVCGA 92 (102)
Q Consensus 83 kl~VCeVCGA 92 (102)
+..+|.|||-
T Consensus 170 ~~~~C~~CG~ 179 (202)
T 1yuz_A 170 KFHLCPICGY 179 (202)
T ss_dssp CEEECSSSCC
T ss_pred cEEEECCCCC
Confidence 4678888883
No 15
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.85 E-value=26 Score=21.38 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 14 NAEQITLLSEKINNLVSEAERVGME--------GSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 14 ~~e~i~~l~~~I~~ll~eaE~LGee--------G~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
.++++..|..+|..+-.++..|-.. .+.+....++.+.+.+..+.+.+..+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777776666654432 47888999999999999888777654
No 16
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=58.18 E-value=30 Score=21.40 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy2248 19 TLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLK 55 (102)
Q Consensus 19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk 55 (102)
..+-..+...+.+.+.+.+.|+.++|+.++..+...-
T Consensus 20 ~~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~i 56 (85)
T 3r8n_T 20 ASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIV 56 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3677888899999999999999999999998877653
No 17
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=57.76 E-value=2 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
-+|++|..||.|=
T Consensus 4 s~mr~C~~CgvYT 16 (60)
T 2apo_B 4 MRMKKCPKCGLYT 16 (60)
T ss_dssp CCCEECTTTCCEE
T ss_pred hhceeCCCCCCEe
Confidence 3678888888763
No 18
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=56.71 E-value=27 Score=20.30 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy2248 18 ITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCD 52 (102)
Q Consensus 18 i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve 52 (102)
|.+|..+-.++-.++|+||--|+|......+.+++
T Consensus 27 ieelkkkweelkkkieelggggevkkveeevkkle 61 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLE 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 55677777888899999999999987665544443
No 19
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=61.40 E-value=2.3 Score=18.57 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=8.2
Q ss_pred ccchhhhhhhh
Q psy2248 85 EVCTVCGAFLI 95 (102)
Q Consensus 85 ~VCeVCGA~Ls 95 (102)
..|++||.-..
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 67999996443
No 20
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=55.84 E-value=2.5 Score=23.54 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=8.4
Q ss_pred ccchhhhhhhh
Q psy2248 85 EVCTVCGAFLI 95 (102)
Q Consensus 85 ~VCeVCGA~Ls 95 (102)
-+|.+||+--+
T Consensus 31 w~CP~Cg~~k~ 41 (46)
T 6rxn_A 31 WCCPVCGVSKD 41 (46)
T ss_dssp CBCTTTCCBGG
T ss_pred CcCcCCCCcHH
Confidence 49999998533
No 21
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=55.60 E-value=27 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 15 AEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 15 ~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
..++..|..+.|.+-+++-.+...| +++..++.++..|+.+.+.++..
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKG--EPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC--CCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777666666 35566777777777666666543
No 22
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=55.42 E-value=3.2 Score=18.25 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=7.3
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|++||.-
T Consensus 3 ~~C~~C~~~ 11 (29)
T 1ard_A 3 FVCEVCTRA 11 (29)
T ss_dssp CBCTTTCCB
T ss_pred eECCCCCcc
Confidence 679999964
No 23
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=53.63 E-value=28 Score=19.69 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy2248 21 LSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62 (102)
Q Consensus 21 l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~ 62 (102)
|.++|..+-.-++++-..|+.|+..-|-.-+..|+.+...++
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777888889999998888777777777666554
No 24
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=52.53 E-value=29 Score=19.43 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q psy2248 21 LSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEERE 59 (102)
Q Consensus 21 l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~ 59 (102)
|.++|..+-.-++.+...|+.|+.-.|-.-+..|..|..
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 344555555667788899999999888888888877654
No 25
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=52.46 E-value=54 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy2248 19 TLLSEKINNLVSEAERVGMEGSVEKAQGL 47 (102)
Q Consensus 19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l 47 (102)
...+..|..+.+.|+ ++|+.+-+.-+
T Consensus 96 ~e~t~~y~~~~~~A~---eegd~~~~~~f 121 (191)
T 1lko_A 96 HEYTEMYPSFARIAR---EEGYEEIARVF 121 (191)
T ss_dssp HHHHTHHHHHHHHHH---HHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HhCcHHHHHHH
Confidence 344555666655555 45556555433
No 26
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=51.60 E-value=3.2 Score=23.85 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=8.2
Q ss_pred ccchhhhhhh
Q psy2248 85 EVCTVCGAFL 94 (102)
Q Consensus 85 ~VCeVCGA~L 94 (102)
-+|.+||+=-
T Consensus 37 w~CP~Cg~~K 46 (54)
T 4rxn_A 37 WVCPLCGVGK 46 (54)
T ss_dssp CBCTTTCCBG
T ss_pred CcCcCCCCcH
Confidence 5999999853
No 27
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=51.23 E-value=35 Score=19.95 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2248 20 LLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57 (102)
Q Consensus 20 ~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e 57 (102)
.+...|..+-.+...+.+.-+.++|..+-.++..|+..
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45666888888999999999999999988888888654
No 28
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=49.14 E-value=3.8 Score=17.98 Aligned_cols=11 Identities=27% Similarity=0.621 Sum_probs=8.1
Q ss_pred cccchhhhhhh
Q psy2248 84 MEVCTVCGAFL 94 (102)
Q Consensus 84 l~VCeVCGA~L 94 (102)
...|++||.-.
T Consensus 3 ~~~C~~C~~~f 13 (30)
T 2m0d_A 3 PYQCDYCGRSF 13 (30)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCccc
Confidence 46799999643
No 29
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=48.92 E-value=3.8 Score=26.79 Aligned_cols=9 Identities=44% Similarity=1.010 Sum_probs=8.0
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
.+|++|||-
T Consensus 72 Y~CpiCGAT 80 (106)
T 3alr_A 72 YKCPLCGAT 80 (106)
T ss_dssp CCCTTTCCC
T ss_pred ccCCCCCCc
Confidence 899999984
No 30
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=54.39 E-value=3.7 Score=18.19 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=8.4
Q ss_pred ccchhhhhhhh
Q psy2248 85 EVCTVCGAFLI 95 (102)
Q Consensus 85 ~VCeVCGA~Ls 95 (102)
..|+.||.-..
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 68999997543
No 31
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.63 E-value=4.6 Score=18.91 Aligned_cols=13 Identities=23% Similarity=0.807 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 7 ~~~~~C~~C~k~f 19 (36)
T 2elr_A 7 GKTHLCDMCGKKF 19 (36)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CCCeecCcCCCCc
Confidence 4568999999643
No 32
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.41 E-value=50 Score=26.53 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 16 EQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 16 e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
.++..|..+.|.+-+++-.+-..|+ ++..++.++..|+.+.+.|+.
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~--~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKE--DAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666555553 355666666666666665544
No 33
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=48.27 E-value=3.9 Score=23.18 Aligned_cols=9 Identities=56% Similarity=1.080 Sum_probs=7.6
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
-+|.+||+-
T Consensus 36 w~CP~Cg~~ 44 (52)
T 1yk4_A 36 WVCPLCGAP 44 (52)
T ss_dssp CBCTTTCCB
T ss_pred CcCCCCCCC
Confidence 499999984
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.18 E-value=46 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhcC
Q psy2248 17 QITLLSEKINNLVS-------EAERVGMEG 39 (102)
Q Consensus 17 ~i~~l~~~I~~ll~-------eaE~LGeeG 39 (102)
-++.|+.+|+..++ ++++|-++.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666 666666543
No 35
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A
Probab=48.16 E-value=2.2 Score=27.77 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=14.9
Q ss_pred cccchhhhhhhhcccccCC
Q psy2248 84 MEVCTVCGAFLIVGDAQSV 102 (102)
Q Consensus 84 l~VCeVCGA~Ls~~D~d~~ 102 (102)
.-.=.-||.|+|++|+.+|
T Consensus 43 valrth~gkyvsigdhkqv 61 (118)
T 1hcd_A 43 VALKTHCGKYLSIGDHKQV 61 (118)
T ss_dssp EEEESSSSCEEEEEETTEE
T ss_pred EEEEeccCcEEEecCCceE
Confidence 3444679999999999875
No 36
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=47.93 E-value=3.7 Score=18.01 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=7.7
Q ss_pred cccchhhhhh
Q psy2248 84 MEVCTVCGAF 93 (102)
Q Consensus 84 l~VCeVCGA~ 93 (102)
...|++||.-
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 4689999964
No 37
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=47.61 E-value=44 Score=20.06 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy2248 21 LSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREML 61 (102)
Q Consensus 21 l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l 61 (102)
|.++|..+-.-++++-..|+.|+..-|-.-+..|+.+...+
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667778888999998877777777776665544
No 38
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=46.75 E-value=4.2 Score=23.32 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=7.6
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
-+|.+||+-
T Consensus 37 w~CP~Cga~ 45 (55)
T 2v3b_B 37 WVCPDCGVG 45 (55)
T ss_dssp CCCTTTCCC
T ss_pred CcCCCCCCC
Confidence 489999984
No 39
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=52.35 E-value=4.2 Score=18.02 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=7.7
Q ss_pred ccchhhhhhh
Q psy2248 85 EVCTVCGAFL 94 (102)
Q Consensus 85 ~VCeVCGA~L 94 (102)
..|++||.-.
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 5799999743
No 40
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=46.07 E-value=3.9 Score=19.11 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=10.0
Q ss_pred hccccchhhhhhhh
Q psy2248 82 KQMEVCTVCGAFLI 95 (102)
Q Consensus 82 qkl~VCeVCGA~Ls 95 (102)
.+...|++||.-..
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 1srk_A 5 KRPFVCRICLSAFT 18 (35)
T ss_dssp CSCEECSSSCCEES
T ss_pred CcCeeCCCCCcccC
Confidence 34588999997543
No 41
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.89 E-value=4.8 Score=17.51 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=7.2
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|++||..
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 579999964
No 42
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.68 E-value=5.1 Score=17.67 Aligned_cols=10 Identities=30% Similarity=0.467 Sum_probs=7.6
Q ss_pred cccchhhhhh
Q psy2248 84 MEVCTVCGAF 93 (102)
Q Consensus 84 l~VCeVCGA~ 93 (102)
-..|++||.-
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvg_A 3 PYRCPLCRAG 12 (27)
T ss_dssp TEEETTTTEE
T ss_pred CcCCCCCCcc
Confidence 3679999964
No 43
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=45.51 E-value=64 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2248 20 LLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54 (102)
Q Consensus 20 ~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 54 (102)
.+.-.+-..|.+++.+-+.|++|+|.+++..+..+
T Consensus 168 ~y~Itv~~~~~~~~~a~~~g~l~~a~~~l~~v~~~ 202 (412)
T 2ra1_A 168 IYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQY 202 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 56667778899999999999999999999999875
No 44
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.76 E-value=5.8 Score=18.71 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 7 ~k~~~C~~C~k~f 19 (37)
T 2elo_A 7 GRSYSCPVCEKSF 19 (37)
T ss_dssp CCCCEETTTTEEC
T ss_pred CCCcCCCCCCCcc
Confidence 3458899999643
No 45
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=44.49 E-value=4.1 Score=23.07 Aligned_cols=9 Identities=56% Similarity=1.055 Sum_probs=7.5
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
-+|.+||+-
T Consensus 37 w~CP~Cg~~ 45 (52)
T 1e8j_A 37 WACPVCGAS 45 (52)
T ss_dssp CCCSSSCCC
T ss_pred CcCCCCCCc
Confidence 489999984
No 46
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=44.41 E-value=4.2 Score=20.17 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=7.3
Q ss_pred cchhhhhhh
Q psy2248 86 VCTVCGAFL 94 (102)
Q Consensus 86 VCeVCGA~L 94 (102)
-|++|.+|-
T Consensus 5 YCe~CE~FG 13 (26)
T 2hqh_E 5 YCEICEMFG 13 (26)
T ss_dssp EETTTTEES
T ss_pred cchHHHHhC
Confidence 499999884
No 47
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=44.20 E-value=4.8 Score=25.02 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=6.9
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
.+|.|||+-
T Consensus 61 W~CPvCga~ 69 (81)
T 2kn9_A 61 WSCPDCGAA 69 (81)
T ss_dssp CCCTTTCCC
T ss_pred CcCCCCCCC
Confidence 489999873
No 48
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=43.72 E-value=5.1 Score=24.10 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.5
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
-+|.+||+-
T Consensus 41 w~CP~Cga~ 49 (70)
T 1dx8_A 41 FMCPACRSP 49 (70)
T ss_dssp CBCTTTCCB
T ss_pred CcCCCCCCC
Confidence 489999983
No 49
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=43.67 E-value=53 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy2248 16 EQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLK 55 (102)
Q Consensus 16 e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk 55 (102)
+.+..+......++.+++.+-.+|+.++|..+..++=...
T Consensus 300 e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~ 339 (490)
T 3n71_A 300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQ 339 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4566667777788899999999999999999887665443
No 50
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=43.56 E-value=63 Score=20.72 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2248 23 EKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54 (102)
Q Consensus 23 ~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 54 (102)
.+|-.+++++..|-..|+..+|..+++++-.+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 67888999999999999999999999888655
No 51
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.51 E-value=4 Score=19.26 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||..
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2els_A 7 GKIFTCEYCNKV 18 (36)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCEECCCCCce
Confidence 456899999964
No 52
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=43.18 E-value=89 Score=22.36 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 11 QNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 11 ~~~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
.....+.+..|+..=.++..++..+...|+++-|--+...+=+.+....++..
T Consensus 23 ~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~ 75 (218)
T 3frt_A 23 MRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777888899999999999999888888888877777654
No 53
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=43.13 E-value=5.3 Score=17.28 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=7.2
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|++||.-
T Consensus 3 ~~C~~C~~~ 11 (29)
T 2m0e_A 3 HKCPHCDKK 11 (29)
T ss_dssp CCCSSCCCC
T ss_pred CcCCCCCcc
Confidence 579999964
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.93 E-value=44 Score=18.76 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2248 10 QQNENAEQITLLSEKINNLVSEAERVG 36 (102)
Q Consensus 10 ~~~~~~e~i~~l~~~I~~ll~eaE~LG 36 (102)
.......++.+|..+|..|..+.++|-
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666665554
No 55
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=42.77 E-value=4.9 Score=17.61 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=7.2
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|++||..
T Consensus 3 ~~C~~C~k~ 11 (29)
T 1rik_A 3 FACPECPKR 11 (29)
T ss_dssp EECSSSSCE
T ss_pred ccCCCCCch
Confidence 579999964
No 56
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=42.76 E-value=6.4 Score=18.54 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 9 ~k~~~C~~C~k~ 20 (37)
T 1p7a_A 9 IKPFQCPDCDRS 20 (37)
T ss_dssp SSSBCCTTTCCC
T ss_pred CCCccCCCCCcc
Confidence 456899999964
No 57
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=42.16 E-value=50 Score=19.22 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy2248 20 LLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62 (102)
Q Consensus 20 ~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~ 62 (102)
-|.++|..+-.-+.++-..|+.|+..-|-.-+..|+.+...+.
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666778888899999998888877777777665543
No 58
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=42.13 E-value=27 Score=20.55 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Q psy2248 16 EQITLLSEKINNLVSEAERVGM--EGSVEKAQGLMK 49 (102)
Q Consensus 16 e~i~~l~~~I~~ll~eaE~LGe--eG~VdeA~~l~~ 49 (102)
+.|..|.++.+.-+.++.++-+ .||+++|...++
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4677788888877777777433 399999998875
No 59
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=41.24 E-value=6 Score=18.33 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.1
Q ss_pred ccchhhhhhhh
Q psy2248 85 EVCTVCGAFLI 95 (102)
Q Consensus 85 ~VCeVCGA~Ls 95 (102)
..|++||.-.+
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 57999997433
No 60
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.10 E-value=5.8 Score=17.08 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=7.0
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|++||.-
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 479999964
No 61
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=40.65 E-value=6.4 Score=17.15 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=7.5
Q ss_pred ccchhhhhhh
Q psy2248 85 EVCTVCGAFL 94 (102)
Q Consensus 85 ~VCeVCGA~L 94 (102)
..|++||.-.
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5799999643
No 62
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=40.29 E-value=59 Score=19.46 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 14 NAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 14 ~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
....|....++|..+...++.|.+.|-. .|..+...+..+......|...
T Consensus 48 fe~~~~~~~~~i~~l~~~a~~L~~~~h~-~~~~I~~r~~~l~~~w~~L~~~ 97 (107)
T 2spc_A 48 FDKAINGHEQKIAALQTVADQLIAQNHY-ASNLVDEKRKQVLERWRHLKEG 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999888754 4667777888887777766543
No 63
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.12 E-value=5.6 Score=18.56 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2elt_A 7 GKPYKCPQCSYA 18 (36)
T ss_dssp CCSEECSSSSCE
T ss_pred CCCCCCCCCCcc
Confidence 456899999963
No 64
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=39.88 E-value=6.5 Score=18.40 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=7.7
Q ss_pred ccchhhhhhh
Q psy2248 85 EVCTVCGAFL 94 (102)
Q Consensus 85 ~VCeVCGA~L 94 (102)
..|++||.-.
T Consensus 3 ~~C~~C~k~F 12 (33)
T 1rim_A 3 FACPECPKRF 12 (33)
T ss_dssp CCCSSSCCCC
T ss_pred ccCCCCCchh
Confidence 5799999643
No 65
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.55 E-value=5.7 Score=18.34 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.0
Q ss_pred ccccchhhhhhh
Q psy2248 83 QMEVCTVCGAFL 94 (102)
Q Consensus 83 kl~VCeVCGA~L 94 (102)
+...|++||.-.
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 2elx_A 6 SGYVCALCLKKF 17 (35)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCCCcchh
Confidence 457899999643
No 66
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=39.54 E-value=7.5 Score=27.85 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=13.5
Q ss_pred ccchhhhhhhhcccccCC
Q psy2248 85 EVCTVCGAFLIVGDAQSV 102 (102)
Q Consensus 85 ~VCeVCGA~Ls~~D~d~~ 102 (102)
..|+.|..|| .+|.++|
T Consensus 22 ~gCpnC~~~l-~g~~~~v 38 (200)
T 2exu_A 22 DGCPNCQGIF-EEAGVST 38 (200)
T ss_dssp HCCTTTHHHH-HHHTCCS
T ss_pred CCCCCCcccc-CCCccee
Confidence 5899999998 6776653
No 67
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=39.48 E-value=6.8 Score=18.87 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=8.9
Q ss_pred ccccchhhhhhh
Q psy2248 83 QMEVCTVCGAFL 94 (102)
Q Consensus 83 kl~VCeVCGA~L 94 (102)
+...|++||.-.
T Consensus 5 k~~~C~~C~k~f 16 (39)
T 1njq_A 5 RSYTCSFCKREF 16 (39)
T ss_dssp SSEECTTTCCEE
T ss_pred CceECCCCCccc
Confidence 447899999643
No 68
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=39.44 E-value=8 Score=16.97 Aligned_cols=9 Identities=22% Similarity=0.689 Sum_probs=7.2
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|+.||.-
T Consensus 3 ~~C~~C~k~ 11 (30)
T 1paa_A 3 YACGLCNRA 11 (30)
T ss_dssp SBCTTTCCB
T ss_pred cCCcccCcc
Confidence 579999964
No 69
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=39.10 E-value=6.4 Score=25.43 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Q psy2248 17 QITLLSEKINNLVSEAERVGMEG-SVEKAQGLMKLCDQLKEEREM 60 (102)
Q Consensus 17 ~i~~l~~~I~~ll~eaE~LGeeG-~VdeA~~l~~~ve~Lk~ek~~ 60 (102)
....|+++|.+.+++|..+-..| .-.++-.....||.|..+..-
T Consensus 24 ~~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeash 68 (99)
T 2lj9_A 24 PEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASH 68 (99)
T ss_dssp ---------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34468999999999999998774 334656666777777665433
No 70
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.58 E-value=6 Score=18.58 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||...
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elv_A 7 GLLYDCHICERKF 19 (36)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCcc
Confidence 3558899999643
No 71
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=38.48 E-value=23 Score=22.47 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy2248 17 QITLLSEKINNLVSE 31 (102)
Q Consensus 17 ~i~~l~~~I~~ll~e 31 (102)
+|.+|+.+||+|+.+
T Consensus 53 ~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 53 RIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888888865
No 72
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.01 E-value=5.8 Score=30.10 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=13.7
Q ss_pred hccccchhhhhhhhcccc
Q psy2248 82 KQMEVCTVCGAFLIVGDA 99 (102)
Q Consensus 82 qkl~VCeVCGA~Ls~~D~ 99 (102)
-+.++|+.||.|+=+.|-
T Consensus 251 ~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 251 LRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp EEEEEETTTTEEEEEEET
T ss_pred eEEEEcccccchHhhhhh
Confidence 467889999988876654
No 73
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.98 E-value=6.4 Score=17.16 Aligned_cols=9 Identities=44% Similarity=1.006 Sum_probs=7.2
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
..|++||.-
T Consensus 4 ~~C~~C~k~ 12 (28)
T 2kvf_A 4 YSCSVCGKR 12 (28)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCCcc
Confidence 579999964
No 74
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.92 E-value=6.5 Score=18.56 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=9.5
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 7 ~k~~~C~~C~k~f 19 (37)
T 2elp_A 7 GRAMKCPYCDFYF 19 (37)
T ss_dssp CCCEECSSSSCEE
T ss_pred CCCeECCCCChhh
Confidence 3558999999643
No 75
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=37.85 E-value=73 Score=19.85 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 11 QNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 11 ~~~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
.++..+.|.+-..-|+.|.++.+.+.++|+-++--.-...++.-+.....|..
T Consensus 24 ~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r 76 (90)
T 4b6x_A 24 GAALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQR 76 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999998866666666665555555544
No 76
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=37.72 E-value=7.4 Score=20.09 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=8.3
Q ss_pred ccccchhhhh
Q psy2248 83 QMEVCTVCGA 92 (102)
Q Consensus 83 kl~VCeVCGA 92 (102)
+-..|++||.
T Consensus 6 kp~~C~~C~k 15 (48)
T 3iuf_A 6 KPYACDICGK 15 (48)
T ss_dssp SCEECTTTCC
T ss_pred cCEECCCcCc
Confidence 5588999995
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=37.57 E-value=63 Score=22.90 Aligned_cols=34 Identities=21% Similarity=-0.017 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy2248 22 SEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLK 55 (102)
Q Consensus 22 ~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk 55 (102)
.++|..++.+.-.....|+|++|..+..+++..-
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~ 42 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQEL 42 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4678888888888899999999999999987753
No 78
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=37.24 E-value=94 Score=20.93 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 14 NAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 14 ~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
....+....++|..+...++.|...|..+ +..+...++.|......+...
T Consensus 164 f~~~l~~~~~~v~~l~~~~~~L~~~~h~~-~~~I~~~~~~l~~rW~~l~~~ 213 (218)
T 3fb2_A 164 FDKAINVQEEKIAALQAFADQLIAAGHYA-KGDISSRRNEVLDRWRRLKAQ 213 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999888875 567777888888777776653
No 79
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.91 E-value=1e+02 Score=24.67 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 17 QITLLSEKINNLVSEAERVGMEGS------VEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 17 ~i~~l~~~I~~ll~eaE~LGeeG~------VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
++..|..+.|.+-+++-++...|+ -+++..++.++..|+.+.+.++.
T Consensus 85 ~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 137 (501)
T 1wle_A 85 QIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYP 137 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444332 13566777777777777766654
No 80
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.87 E-value=8.8 Score=18.84 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2eoj_A 10 ENPYECCECGKV 21 (44)
T ss_dssp CCSCEETTTTEE
T ss_pred CcCeeCCCCCCc
Confidence 456899999964
No 81
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.81 E-value=6.5 Score=24.73 Aligned_cols=7 Identities=57% Similarity=1.388 Sum_probs=4.0
Q ss_pred cchhhhh
Q psy2248 86 VCTVCGA 92 (102)
Q Consensus 86 VCeVCGA 92 (102)
+|.+||+
T Consensus 70 ~CPvCga 76 (87)
T 1s24_A 70 CCPDCGA 76 (87)
T ss_dssp CCSSSCC
T ss_pred CCCCCCC
Confidence 5555554
No 82
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.81 E-value=6.8 Score=18.36 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||...
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elq_A 7 GKPFKCSLCEYAT 19 (36)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCccCCCCCchh
Confidence 4568999999643
No 83
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=35.88 E-value=95 Score=20.58 Aligned_cols=50 Identities=8% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 14 NAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 14 ~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
....|.....+|..+...++.|...|..+ +..+...++.+......|...
T Consensus 152 f~~~l~~~~~~i~~l~~~a~~L~~~~h~~-~~~I~~~~~~l~~rw~~l~~~ 201 (214)
T 1s35_A 152 FLGSMENNRDKVLSPVDSGNKLVAEGNLY-SDKIKEKVQLIEDRHRKNNEK 201 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999998876 666777888887777776653
No 84
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=35.23 E-value=7.2 Score=21.40 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=7.5
Q ss_pred cccchhhhhh
Q psy2248 84 MEVCTVCGAF 93 (102)
Q Consensus 84 l~VCeVCGA~ 93 (102)
-.-|++|..|
T Consensus 20 RpYCd~CEvF 29 (42)
T 2pzo_E 20 RPYCEICEMF 29 (42)
T ss_dssp -CEETTTTEE
T ss_pred Cccccccccc
Confidence 3679999887
No 85
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=35.17 E-value=8 Score=31.84 Aligned_cols=17 Identities=29% Similarity=0.598 Sum_probs=0.0
Q ss_pred hhhccccchhhhhhhhc
Q psy2248 80 QEKQMEVCTVCGAFLIV 96 (102)
Q Consensus 80 ~~qkl~VCeVCGA~Ls~ 96 (102)
.|-.|.-||+||+-|..
T Consensus 190 NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 190 NHPQIGNCEICGHRLPN 206 (566)
T ss_dssp -----------------
T ss_pred CChhhhcccccCCcCCC
Confidence 46789999999999975
No 86
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.10 E-value=9.8 Score=18.60 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2en7_A 10 MKPYVCNECGKA 21 (44)
T ss_dssp SSSSCCTTTCCC
T ss_pred CcCeECCCCCCc
Confidence 456899999964
No 87
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.98 E-value=10 Score=18.34 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 8 ~k~~~C~~C~k~ 19 (42)
T 2yte_A 8 EKPYSCAECKET 19 (42)
T ss_dssp CCSCBCTTTCCB
T ss_pred CCCeECCCCCCc
Confidence 355899999964
No 88
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=34.72 E-value=10 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.0
Q ss_pred hhccccchhhhhhh
Q psy2248 81 EKQMEVCTVCGAFL 94 (102)
Q Consensus 81 ~qkl~VCeVCGA~L 94 (102)
.+.++.|+-||+.+
T Consensus 15 ~~~~~fCPkCG~~~ 28 (55)
T 2k4x_A 15 VRKHRFCPRCGPGV 28 (55)
T ss_dssp CCSSCCCTTTTTTC
T ss_pred EEccccCcCCCCce
Confidence 45689999999944
No 89
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=34.19 E-value=9.1 Score=20.03 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.5
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 22 ~k~~~C~~C~k~ 33 (54)
T 1yui_A 22 EQPATCPICYAV 33 (54)
T ss_dssp SCCEECTTTCCE
T ss_pred CCCccCCCCCcc
Confidence 456899999964
No 90
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=34.06 E-value=94 Score=19.98 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2248 19 TLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54 (102)
Q Consensus 19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 54 (102)
..+-..+...+.+.+.+.+.|+.+.|+.++..+...
T Consensus 27 ka~kS~~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~ 62 (106)
T 2vqe_T 27 KAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESL 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367788899999999999999999999999887765
No 91
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=33.73 E-value=7.3 Score=25.04 Aligned_cols=14 Identities=43% Similarity=0.831 Sum_probs=11.2
Q ss_pred ccccchhhhhhhhc
Q psy2248 83 QMEVCTVCGAFLIV 96 (102)
Q Consensus 83 kl~VCeVCGA~Ls~ 96 (102)
..+||.-||.-++.
T Consensus 74 ~YRvCn~CGkPI~l 87 (96)
T 3mhs_E 74 QYRVCEKCGKPLAL 87 (96)
T ss_dssp CCEEETTTCCEECG
T ss_pred cchhhhccCCceeH
Confidence 45999999986654
No 92
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.58 E-value=12 Score=18.08 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 9 ~k~~~C~~C~k~ 20 (42)
T 2ytb_A 9 EKPYRCDQCGKA 20 (42)
T ss_dssp CCSBCCTTTTCC
T ss_pred CCCeeCCCccch
Confidence 456889999964
No 93
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.88 E-value=7.9 Score=18.48 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=8.7
Q ss_pred ccccchhhhhh
Q psy2248 83 QMEVCTVCGAF 93 (102)
Q Consensus 83 kl~VCeVCGA~ 93 (102)
+...|+.||.-
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elm_A 8 HLYYCSQCHYS 18 (37)
T ss_dssp CEEECSSSSCE
T ss_pred cCeECCCCCcc
Confidence 45789999964
No 94
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.79 E-value=11 Score=18.65 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emg_A 10 ENPFICSECGKVF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 4568999999643
No 95
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=32.59 E-value=7.5 Score=21.43 Aligned_cols=10 Identities=40% Similarity=1.045 Sum_probs=8.2
Q ss_pred cccchhhhhh
Q psy2248 84 MEVCTVCGAF 93 (102)
Q Consensus 84 l~VCeVCGA~ 93 (102)
|-+||.||++
T Consensus 6 ~~~CE~CG~~ 15 (43)
T 2w0t_A 6 PAVCEMCGIV 15 (43)
T ss_dssp EEECTTTCCE
T ss_pred eehhhhhcCc
Confidence 5689999974
No 96
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.55 E-value=12 Score=18.52 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq1_A 10 EKPYKCNECGKA 21 (46)
T ss_dssp SCCCCCTTTTCC
T ss_pred CCCeECCcCChh
Confidence 456899999964
No 97
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.25 E-value=11 Score=18.51 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (44)
T 2eox_A 10 SKSYNCNECGKA 21 (44)
T ss_dssp CCCEEETTTTEE
T ss_pred CCCeECcccCcc
Confidence 356899999964
No 98
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.14 E-value=8.9 Score=19.02 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~F 22 (44)
T 2epv_A 10 EKPYECNECGKAF 22 (44)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCccc
Confidence 4568999999643
No 99
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=31.93 E-value=7.3 Score=21.54 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=11.1
Q ss_pred hccccchhhhhhhhc
Q psy2248 82 KQMEVCTVCGAFLIV 96 (102)
Q Consensus 82 qkl~VCeVCGA~Ls~ 96 (102)
-..+||+-||.-++.
T Consensus 15 ~~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 15 IQYRVCEKCGKPLAL 29 (44)
T ss_dssp CCEEECTTTCCEEET
T ss_pred ccchhhcccCCcchH
Confidence 356999999976543
No 100
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.70 E-value=12 Score=18.42 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~~~~~C~~C~k~f 22 (44)
T 2eou_A 10 KTTSECQECGKIF 22 (44)
T ss_dssp SCCCCCTTTCCCC
T ss_pred CcCeECCCCCccc
Confidence 4568899999643
No 101
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=31.46 E-value=8.2 Score=19.10 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=9.8
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
..+..|++||.-+
T Consensus 18 ~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 18 PGTGHCEMCSLPR 30 (31)
T ss_dssp SSCSSCSSSCCCC
T ss_pred CCCCccCCcCCCC
Confidence 4568999999754
No 102
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=31.18 E-value=8.1 Score=20.70 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=11.2
Q ss_pred cccchhhhhhhhcc
Q psy2248 84 MEVCTVCGAFLIVG 97 (102)
Q Consensus 84 l~VCeVCGA~Ls~~ 97 (102)
..+|+-||..+.+.
T Consensus 9 ~~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 9 QVPCEKCGSLVPVW 22 (39)
T ss_dssp EEECTTTCCEEEGG
T ss_pred CcccccccCcCCcc
Confidence 47899999987654
No 103
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.87 E-value=12 Score=18.66 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eoz_A 10 EKPYSCNVCGKA 21 (46)
T ss_dssp CCSEEETTTTEE
T ss_pred CCCeECcccChh
Confidence 456889999964
No 104
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.76 E-value=13 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=9.8
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2enh_A 10 EKPYECDVCRKAF 22 (46)
T ss_dssp SSSCBCTTTCCBC
T ss_pred CCCcCCCCcCchh
Confidence 4568999999643
No 105
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.65 E-value=11 Score=18.35 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2eof_A 10 EKPYECNECQKA 21 (44)
T ss_dssp CCSEECTTTCCE
T ss_pred CCCeECCCCCcc
Confidence 456899999964
No 106
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.42 E-value=13 Score=18.35 Aligned_cols=13 Identities=23% Similarity=0.605 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq3_A 10 EKPYECNQCGKAF 22 (46)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCeECCCCChhh
Confidence 4568899999643
No 107
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.23 E-value=11 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=10.7
Q ss_pred ccccchhhhhhhhcc
Q psy2248 83 QMEVCTVCGAFLIVG 97 (102)
Q Consensus 83 kl~VCeVCGA~Ls~~ 97 (102)
.-+||.|||=-+.++
T Consensus 15 ~~qiCqiCGD~VG~~ 29 (93)
T 1weo_A 15 DGQFCEICGDQIGLT 29 (93)
T ss_dssp SSCBCSSSCCBCCBC
T ss_pred CCCccccccCccccC
Confidence 448999999654443
No 108
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.20 E-value=12 Score=18.14 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 9 ~k~~~C~~C~k~ 20 (42)
T 2en2_A 9 EKPYKCETCGAR 20 (42)
T ss_dssp SCSEECTTTCCE
T ss_pred CCCEeCCCcChh
Confidence 455889999964
No 109
>3r24_B Non-structural protein 10 and non-structural PROT; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} PDB: 2g9t_A 2ga6_A
Probab=30.19 E-value=12 Score=25.77 Aligned_cols=12 Identities=50% Similarity=0.913 Sum_probs=10.2
Q ss_pred cccchhhhhhhh
Q psy2248 84 MEVCTVCGAFLI 95 (102)
Q Consensus 84 l~VCeVCGA~Ls 95 (102)
-.||.|||.++.
T Consensus 117 n~vC~VC~~W~~ 128 (155)
T 3r24_B 117 NTVCTVCGMWKG 128 (155)
T ss_dssp CCBCTTTCSBTT
T ss_pred cCcccccccEec
Confidence 489999999875
No 110
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.92 E-value=55 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy2248 27 NLVSEAERVGMEGSVEKAQGLMKLCDQ 53 (102)
Q Consensus 27 ~ll~eaE~LGeeG~VdeA~~l~~~ve~ 53 (102)
..+.+++.|...|+.++|.....++..
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~ 32 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLD 32 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 457799999999999999998887754
No 111
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.87 E-value=11 Score=19.05 Aligned_cols=10 Identities=0% Similarity=-0.187 Sum_probs=7.6
Q ss_pred hccccchhhh
Q psy2248 82 KQMEVCTVCG 91 (102)
Q Consensus 82 qkl~VCeVCG 91 (102)
.+...|++||
T Consensus 38 ~k~~~C~~C~ 47 (48)
T 2epr_A 38 EKPYSSGPSS 47 (48)
T ss_dssp CCCCCSCCCC
T ss_pred CCCccCCCCC
Confidence 4567899997
No 112
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.64 E-value=12 Score=18.16 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2eos_A 9 EKPYPCEICGTRF 21 (42)
T ss_dssp SCCBCCSSSCCCB
T ss_pred CCCEECCCCCCcc
Confidence 3568899999643
No 113
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.53 E-value=12 Score=18.52 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ep1_A 10 EKPYECSDCGKS 21 (46)
T ss_dssp CCSSCCSSSCCC
T ss_pred CCCcCCCCCCch
Confidence 456899999964
No 114
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.25 E-value=12 Score=18.60 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eoh_A 10 KKPYECKECRKT 21 (46)
T ss_dssp SCSCCCSSSCCC
T ss_pred CCCcCCCCcCch
Confidence 456899999964
No 115
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.93 E-value=15 Score=24.38 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=9.0
Q ss_pred ccchhhhhhhh
Q psy2248 85 EVCTVCGAFLI 95 (102)
Q Consensus 85 ~VCeVCGA~Ls 95 (102)
..|++||.||-
T Consensus 34 ~gCpnC~~~l~ 44 (120)
T 3h7h_A 34 DGCDNCDAYLQ 44 (120)
T ss_dssp HCCTTTHHHHC
T ss_pred CCCCCCcchhh
Confidence 57999998774
No 116
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.93 E-value=15 Score=18.27 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2en9_A 10 KKLFKCNECKKT 21 (46)
T ss_dssp SCCCBCTTTCCB
T ss_pred CCCEECCccCcc
Confidence 456899999964
No 117
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=28.82 E-value=1e+02 Score=20.35 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy2248 23 EKINNLVSEAERVGMEGSVEKAQGLMKLCDQ 53 (102)
Q Consensus 23 ~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~ 53 (102)
.++..+-.++|.++..|+.+.+..++.+++.
T Consensus 91 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 91 QRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777889999999999988877666655
No 118
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.80 E-value=13 Score=18.46 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2enf_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCSCBCSSSCCB
T ss_pred CcCeECCCCCcc
Confidence 456899999964
No 119
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.58 E-value=1.5e+02 Score=20.49 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHHHHHh
Q psy2248 17 QITLLSEKINNLVSEAERVGMEGSVEK--AQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 17 ~i~~l~~~I~~ll~eaE~LGeeG~Vde--A~~l~~~ve~Lk~ek~~l~~ 63 (102)
++..+..+|..+-.+...|-...+.|+ +.++..++..|+.+......
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777788888887776665 46788888888777665544
No 120
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.52 E-value=8.6 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.750 Sum_probs=11.8
Q ss_pred hccccchhhhh--hhhcc
Q psy2248 82 KQMEVCTVCGA--FLIVG 97 (102)
Q Consensus 82 qkl~VCeVCGA--~Ls~~ 97 (102)
...+-|+.||+ |+..+
T Consensus 17 ~~~k~CP~CG~~~fm~~~ 34 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADH 34 (50)
T ss_dssp CSSEECSSSCSSCEEEEC
T ss_pred EecccCCCCCCceEEecC
Confidence 45688999998 76543
No 121
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=28.31 E-value=12 Score=21.04 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=11.0
Q ss_pred ccccchhhhhhhhc
Q psy2248 83 QMEVCTVCGAFLIV 96 (102)
Q Consensus 83 kl~VCeVCGA~Ls~ 96 (102)
.+.+|+.||..+..
T Consensus 17 ~~~~C~~CG~~i~~ 30 (49)
T 2l8e_A 17 NLLKCEYCGKYAPA 30 (49)
T ss_dssp SEEECTTTCCEEEG
T ss_pred CCCcChhccCcccc
Confidence 45789999987663
No 122
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.23 E-value=11 Score=18.66 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2emi_A 10 ERHYECSECGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCCCCCCCCcc
Confidence 456899999964
No 123
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=28.21 E-value=1.4e+02 Score=20.33 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy2248 19 TLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62 (102)
Q Consensus 19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~ 62 (102)
..+..+|..+..+++.+-..|+.+.|...+.++-=+..-...+.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 128 KQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888999999999999887776655544444443
No 124
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.18 E-value=11 Score=20.58 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=11.3
Q ss_pred ccccchhhhhhhhcccc
Q psy2248 83 QMEVCTVCGAFLIVGDA 99 (102)
Q Consensus 83 kl~VCeVCGA~Ls~~D~ 99 (102)
+...|++||.-....++
T Consensus 38 k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 38 GTFRCTFCHTEVEEDES 54 (62)
T ss_dssp TEEBCSSSCCBCEECTT
T ss_pred CCEECCCCCCccccCcc
Confidence 45788888876554443
No 125
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=28.09 E-value=11 Score=18.10 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 9 ~~~~~C~~C~k~f 21 (42)
T 2epc_A 9 ETPYLCGQCGKSF 21 (42)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCccc
Confidence 3558899999643
No 126
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.07 E-value=11 Score=18.64 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2em3_A 10 EKPYECKVCSKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCCCCcc
Confidence 456899999964
No 127
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.02 E-value=11 Score=18.63 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ep3_A 10 EKPYRCAECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECCCCCch
Confidence 456899999964
No 128
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.01 E-value=11 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.536 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2en3_A 10 EKPFQCKECGMNF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCcccChhh
Confidence 4568899999643
No 129
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.91 E-value=13 Score=18.30 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eor_A 10 EKPYNCEECGKAF 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CcCccCCCCCCCc
Confidence 4568899999643
No 130
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=27.91 E-value=1.4e+02 Score=20.12 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 13 ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 13 ~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
...+++..|+..-.++..++..+...|+.+.|--+...+=+.|.....|..
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~ 75 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667778888889999999988777777777766666544
No 131
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.66 E-value=13 Score=18.38 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eow_A 10 EKPYKCNECGKA 21 (46)
T ss_dssp CCCEECTTSCCE
T ss_pred CCCeeccccCCh
Confidence 455889999964
No 132
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.65 E-value=13 Score=18.37 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq2_A 10 GKPYQCNECGKA 21 (46)
T ss_dssp SCSSSCCSSCCC
T ss_pred CCCeECCCCCcc
Confidence 456899999964
No 133
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.55 E-value=14 Score=18.43 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+-..|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eon_A 10 EKPYKCQVCGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcccCCCCCCccc
Confidence 4568999999643
No 134
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.32 E-value=14 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eov_A 10 EKPYKCSDCGKS 21 (46)
T ss_dssp CCSCBCSSSCCB
T ss_pred CCCccCCccChh
Confidence 456899999964
No 135
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.31 E-value=12 Score=18.61 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em4_A 10 QRPYECIECGKA 21 (46)
T ss_dssp SSSEECSSSCCE
T ss_pred CcCcCCCCCCCc
Confidence 456889999964
No 136
>2fyg_A Replicase polyprotein 1AB; SARS virus polyprotein non-structural protein NSP10, zinc FI viral protein; 1.80A {Sars coronavirus} SCOP: g.86.1.1 PDB: 2xyq_B* 2xyr_B* 2xyv_B*
Probab=27.17 E-value=14 Score=24.65 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=10.7
Q ss_pred cccchhhhhhhhc
Q psy2248 84 MEVCTVCGAFLIV 96 (102)
Q Consensus 84 l~VCeVCGA~Ls~ 96 (102)
-.||.|||.++.-
T Consensus 110 n~vC~VC~~W~~~ 122 (128)
T 2fyg_A 110 NTVCTVCGMWKGY 122 (128)
T ss_dssp CCBCTTTCSBTTB
T ss_pred cCccceeceeecC
Confidence 4899999998753
No 137
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=27.06 E-value=12 Score=18.05 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 8 ~k~~~C~~C~k~f 20 (42)
T 2el5_A 8 ENPYECSECGKAF 20 (42)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCccCCCcChhh
Confidence 4568899999643
No 138
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.04 E-value=14 Score=18.07 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2emb_A 10 RKRYECSKCQAT 21 (44)
T ss_dssp CSSEECTTTCCE
T ss_pred CCCeECCCCCCc
Confidence 355889999964
No 139
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.71 E-value=15 Score=18.28 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em6_A 10 EKCYKCDVCGKE 21 (46)
T ss_dssp CCCCBCSSSCCB
T ss_pred CCCeECCCCCcc
Confidence 456889999964
No 140
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.62 E-value=14 Score=18.27 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yti_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCTTCCSSSCCC
T ss_pred CcCeECCCCCcc
Confidence 456899999964
No 141
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.47 E-value=14 Score=18.35 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=9.8
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eom_A 10 ERGHRCSDCGKFF 22 (46)
T ss_dssp CSSCCCSSSCCCC
T ss_pred CCCcCCCCCCCee
Confidence 4568999999643
No 142
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=26.44 E-value=9.7 Score=19.67 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=11.2
Q ss_pred ccccchhhhhhhhc
Q psy2248 83 QMEVCTVCGAFLIV 96 (102)
Q Consensus 83 kl~VCeVCGA~Ls~ 96 (102)
+..+|+.||-++-+
T Consensus 5 ~fY~C~~CGnivev 18 (36)
T 1dxg_A 5 DVYKCELCGQVVKV 18 (36)
T ss_dssp CEEECTTTCCEEEE
T ss_pred cEEEcCCCCcEEEE
Confidence 45899999987765
No 143
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.33 E-value=17 Score=17.91 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytr_A 10 EKPYKCNECGKA 21 (46)
T ss_dssp CCTTCCTTTCCC
T ss_pred CcCcCCCCCCCc
Confidence 456889999964
No 144
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.28 E-value=17 Score=17.84 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eop_A 10 EKPHECRECGKS 21 (46)
T ss_dssp CCSCBCTTTCCB
T ss_pred CCCeeCCCCCch
Confidence 456899999964
No 145
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.21 E-value=13 Score=18.47 Aligned_cols=12 Identities=17% Similarity=0.406 Sum_probs=9.1
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eoy_A 10 EKCFKCNKCEKT 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CCCEECcCCCCc
Confidence 355889999964
No 146
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.17 E-value=16 Score=18.01 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (45)
T 2epu_A 10 QKPFECTHCGKS 21 (45)
T ss_dssp CCSEEETTTTEE
T ss_pred CcCccCCCCCCc
Confidence 456889999964
No 147
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.13 E-value=15 Score=18.16 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2yso_A 10 EKSHQCRECGEIF 22 (46)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCEEccccChhh
Confidence 4568899999643
No 148
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=25.96 E-value=15 Score=18.85 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=11.0
Q ss_pred cccchhhhhhhhccc
Q psy2248 84 MEVCTVCGAFLIVGD 98 (102)
Q Consensus 84 l~VCeVCGA~Ls~~D 98 (102)
..+|++|.|.-..+|
T Consensus 16 ~~~CP~CtA~d~t~~ 30 (32)
T 2bai_A 16 FEECPKCSALQYRNG 30 (32)
T ss_dssp GGGHHHHHCSSSTTC
T ss_pred cccccccceeeccCC
Confidence 379999998755443
No 149
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.86 E-value=18 Score=17.82 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eoe_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCSSEETTTTEE
T ss_pred CCCeECCCcChh
Confidence 456899999963
No 150
>3bbo_Y Ribosomal protein L28; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.81 E-value=14 Score=25.52 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.5
Q ss_pred ccchhhhhhhhcc
Q psy2248 85 EVCTVCGAFLIVG 97 (102)
Q Consensus 85 ~VCeVCGA~Ls~~ 97 (102)
++|++||.--..+
T Consensus 76 R~C~itGK~p~~G 88 (151)
T 3bbo_Y 76 RICPFTGKKSNRA 88 (151)
T ss_dssp CCCCCSCCTTCCC
T ss_pred ceeeccCcccccC
Confidence 6899999755443
No 151
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=25.69 E-value=16 Score=18.14 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emk_A 10 EKPYECKECGKA 21 (46)
T ss_dssp SCSCBCSSSCCB
T ss_pred CCceECCCCCch
Confidence 456899999964
No 152
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.46 E-value=14 Score=18.35 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eoo_A 10 ERPYGCNECGKNF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCEEccccCccc
Confidence 4568999999643
No 153
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.23 E-value=17 Score=17.94 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2en1_A 10 EKPFKCEECGKR 21 (46)
T ss_dssp CCSEEETTTTEE
T ss_pred CCCeeCCCCCcc
Confidence 456899999964
No 154
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.19 E-value=14 Score=18.23 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yts_A 10 EKPYICNECGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCEECCCCChh
Confidence 455899999964
No 155
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.13 E-value=17 Score=17.92 Aligned_cols=12 Identities=25% Similarity=0.503 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ysp_A 10 EKPYKCEKCGKG 21 (46)
T ss_dssp CCSEEETTTTEE
T ss_pred CCCeECCCCCCc
Confidence 456899999964
No 156
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.12 E-value=14 Score=18.35 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytp_A 10 ERHYECSECGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCcCCcc
Confidence 456889999964
No 157
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.12 E-value=14 Score=18.23 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2yrj_A 10 EKPYRCGECGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCCCCCc
Confidence 455889999964
No 158
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.03 E-value=15 Score=21.98 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=9.8
Q ss_pred hhccccchhhhhh
Q psy2248 81 EKQMEVCTVCGAF 93 (102)
Q Consensus 81 ~qkl~VCeVCGA~ 93 (102)
..+..+|++||.-
T Consensus 25 ~~~~h~C~~Cgk~ 37 (85)
T 2lv2_A 25 SAECHLCPVCGES 37 (85)
T ss_dssp CCTTEECTTSCCE
T ss_pred CCCCEECCCCCCC
Confidence 3456899999963
No 159
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.00 E-value=14 Score=17.77 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 8 ~k~~~C~~C~k~ 19 (41)
T 2ept_A 8 QRVYECQECGKS 19 (41)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCCCCCC
Confidence 456889999964
No 160
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=24.98 E-value=14 Score=18.30 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emj_A 10 EKPFECAECGKSF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCEECCCCCccc
Confidence 3558899999643
No 161
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.94 E-value=16 Score=18.01 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emh_A 10 ERPYICTVCGKA 21 (46)
T ss_dssp CCSEECTTTCCE
T ss_pred CCCcCCCCCCch
Confidence 456899999964
No 162
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.88 E-value=14 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eml_A 10 EKPYECSVCGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeeCCCcCCc
Confidence 456889999964
No 163
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.84 E-value=19 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2epz_A 10 EKPFDCIDCGKAF 22 (46)
T ss_dssp CCSBCCTTTCCCB
T ss_pred CCCeECCCCCcee
Confidence 4568999999643
No 164
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.84 E-value=14 Score=18.25 Aligned_cols=13 Identities=23% Similarity=0.725 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytj_A 10 EKPYICAECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCChhh
Confidence 4568999999643
No 165
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=24.68 E-value=14 Score=20.50 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=10.0
Q ss_pred cccchhhhhhhh
Q psy2248 84 MEVCTVCGAFLI 95 (102)
Q Consensus 84 l~VCeVCGA~Ls 95 (102)
+.+|++||.+|-
T Consensus 14 ~t~C~~C~k~i~ 25 (49)
T 1kbe_A 14 SQVCNVCQKSMI 25 (49)
T ss_dssp SCCCSSSCCSSC
T ss_pred CcCccccCceeE
Confidence 489999998874
No 166
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.68 E-value=17 Score=17.96 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (47)
T 2epx_A 10 KKPYECIECGKA 21 (47)
T ss_dssp CCSBCCSSSCCC
T ss_pred CCCEECCccCch
Confidence 456899999964
No 167
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.62 E-value=17 Score=17.97 Aligned_cols=12 Identities=25% Similarity=0.503 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2ytg_A 10 EKPFKCGECGKS 21 (46)
T ss_dssp CCSEECTTTCCE
T ss_pred CCCeECCCCCcc
Confidence 456899999964
No 168
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.61 E-value=21 Score=17.66 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytm_A 10 EKPYKCMECGKAF 22 (46)
T ss_dssp CCSSSBTTTTBCC
T ss_pred CCCcCCCCCCchh
Confidence 4568899999643
No 169
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.39 E-value=15 Score=17.92 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2yu5_A 10 ENPFKCSKCDRVF 22 (44)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCchh
Confidence 3558899999643
No 170
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.39 E-value=17 Score=18.00 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2elz_A 10 EKPYKCEDCGKG 21 (46)
T ss_dssp CSSCBCSSSCCB
T ss_pred CCCeeCcccCch
Confidence 456899999964
No 171
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.31 E-value=17 Score=17.97 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yth_A 10 EKPFQCEECGKR 21 (46)
T ss_dssp SSSBCCSSSCCC
T ss_pred CcCCCCCCCCcc
Confidence 355899999964
No 172
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.28 E-value=20 Score=17.67 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytn_A 10 KKPYKCNECGKV 21 (46)
T ss_dssp CSSCBCTTTCCB
T ss_pred CcCeECCCCCCe
Confidence 456899999964
No 173
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.27 E-value=15 Score=18.18 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emp_A 10 VKPYMCNECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCCCCch
Confidence 456899999964
No 174
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.14 E-value=15 Score=18.15 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.1
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emy_A 10 ENPYECHECGKA 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CcCcCCCCCCcc
Confidence 456889999963
No 175
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=24.10 E-value=1.7e+02 Score=19.70 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHHHHHHH
Q psy2248 19 TLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCD---QLKEEREMLR 62 (102)
Q Consensus 19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve---~Lk~ek~~l~ 62 (102)
..+..+|..+..+++.+-..|+.+.|...+.++- +++.+.+.++
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~ 169 (174)
T 3hho_A 123 TKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVE 169 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888889999999999999987766644 4444444433
No 176
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.09 E-value=15 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yto_A 10 EKPYKCSDCGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCEECcccCCc
Confidence 456899999964
No 177
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=24.04 E-value=1.9e+02 Score=20.33 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 14 NAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 14 ~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
...+|......+..+...++.|...|. ..+..+-..++.|...+..|...
T Consensus 264 l~~ei~~~~~~~~~l~~~g~~Ll~~~~-~~~~~i~~~l~~L~~~w~~l~~~ 313 (323)
T 3edv_A 264 IKAEIDARNDSFTTCIELGKSLLARKH-YASEEIKEKLLQLTEKRKEMIDK 313 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888888888888887 44778888888888888887654
No 178
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.98 E-value=20 Score=17.61 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 8 ~k~~~C~~C~k~f 20 (45)
T 2epq_A 8 EKPYSCPVCGLRF 20 (45)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCCcCCCCCccc
Confidence 4568899999643
No 179
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=23.91 E-value=1.6e+02 Score=22.71 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH----HHHHHHHHHHHhhc
Q psy2248 26 NNLVSEAERVGMEGSVEKAQGLMKLC----DQLKEEREMLRKQN 65 (102)
Q Consensus 26 ~~ll~eaE~LGeeG~VdeA~~l~~~v----e~Lk~ek~~l~~~~ 65 (102)
..++.-|+.|..+|..+.|++++.-+ ..+...|++|....
T Consensus 337 ~~~~eYA~lLA~qG~l~~A~~yL~~lp~~~~~~~~lr~Rl~~a~ 380 (399)
T 2pm7_A 337 AKFLEFINLTTSTGNFELATEFLNSLPSDNEEVKTEKARVLIAS 380 (399)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Confidence 35677899999999999999999543 55667777877654
No 180
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.85 E-value=15 Score=18.07 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2epw_A 10 EKPCKCTECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeeCCCCCCc
Confidence 456889999964
No 181
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.83 E-value=15 Score=18.06 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eme_A 10 EKPYVCDYCGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECCCCChh
Confidence 456899999964
No 182
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.82 E-value=16 Score=17.90 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.1
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 8 ~k~~~C~~C~k~ 19 (44)
T 2emx_A 8 EKPFGCSCCEKA 19 (44)
T ss_dssp CCCEECSSSSCE
T ss_pred CcCccCCCCCcc
Confidence 455899999963
No 183
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.79 E-value=21 Score=18.03 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+-..|++||.-.
T Consensus 6 ekp~~C~~CgK~F 18 (36)
T 1fv5_A 6 PARFMCLPCGIAF 18 (36)
T ss_dssp CCCCEETTTTEEC
T ss_pred ccCeECCCCCCcc
Confidence 3568999999643
No 184
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=23.79 E-value=88 Score=16.37 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2248 15 AEQITLLSEKINNLVSEAER 34 (102)
Q Consensus 15 ~e~i~~l~~~I~~ll~eaE~ 34 (102)
.++|+.++.-|-.+++++..
T Consensus 6 ereI~~~t~nIy~LLeeAq~ 25 (36)
T 1jek_B 6 EEEIEQHEGNLSLLLREAAL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888877643
No 185
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.78 E-value=18 Score=17.88 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eoq_A 10 EKPFKCDICGKS 21 (46)
T ss_dssp SCSCCCSSSCCC
T ss_pred CCCcCCCcCCch
Confidence 456899999964
No 186
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.68 E-value=23 Score=17.37 Aligned_cols=13 Identities=23% Similarity=0.697 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq4_A 10 EKLYNCKECGKSF 22 (46)
T ss_dssp CCCCCBTTTTBCC
T ss_pred CCCeECCCCCCcc
Confidence 3558899999643
No 187
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.66 E-value=15 Score=18.04 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytf_A 10 EKPFECSECQKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCcCCCCCCcc
Confidence 456899999964
No 188
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.65 E-value=18 Score=17.73 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 8 ~k~~~C~~C~k~f 20 (43)
T 2yrm_A 8 NGAFFCNECDCRF 20 (43)
T ss_dssp SCCBCCSSSCCCB
T ss_pred CCCEECCCCCCee
Confidence 4568899999743
No 189
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=23.65 E-value=18 Score=17.92 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=10.2
Q ss_pred hccccchhhhhhhh
Q psy2248 82 KQMEVCTVCGAFLI 95 (102)
Q Consensus 82 qkl~VCeVCGA~Ls 95 (102)
.+...|++||.-..
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ely_A 10 EKPFKCVECGKGFS 23 (46)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCcccCccCcccC
Confidence 45689999996433
No 190
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.57 E-value=18 Score=17.93 Aligned_cols=13 Identities=23% Similarity=0.495 Sum_probs=9.8
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emz_A 10 ERPFKCNECGKGF 22 (46)
T ss_dssp CCSCCCSSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 4568999999743
No 191
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.49 E-value=16 Score=21.24 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=7.0
Q ss_pred cccchhhhhh
Q psy2248 84 MEVCTVCGAF 93 (102)
Q Consensus 84 l~VCeVCGA~ 93 (102)
-.||.-||-|
T Consensus 43 H~vc~~CG~Y 52 (60)
T 3v2d_5 43 HTVCPECGYY 52 (60)
T ss_dssp TSCCTTTCEE
T ss_pred eEEcCCCCcC
Confidence 3777778755
No 192
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.33 E-value=20 Score=17.69 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2en6_A 10 EKPYGCNECGKT 21 (46)
T ss_dssp SCCEEETTTTEE
T ss_pred CcCeECCCCCcc
Confidence 456889999964
No 193
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.33 E-value=15 Score=21.59 Aligned_cols=9 Identities=44% Similarity=1.482 Sum_probs=7.5
Q ss_pred ccchhhhhh
Q psy2248 85 EVCTVCGAF 93 (102)
Q Consensus 85 ~VCeVCGA~ 93 (102)
-||=|||-|
T Consensus 20 PvCvvCGry 28 (60)
T 2yqp_A 20 PICVVCGRY 28 (60)
T ss_dssp CCCSSSSSC
T ss_pred ceEEEecCc
Confidence 579999976
No 194
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.28 E-value=18 Score=17.85 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytq_A 10 EKPYGCSECGKA 21 (46)
T ss_dssp CCSCBCSSSCCB
T ss_pred CCCcCCCccChh
Confidence 456899999964
No 195
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.10 E-value=16 Score=18.08 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2em5_A 10 TKSHQCHECGRG 21 (46)
T ss_dssp SCSEECSSSCCE
T ss_pred CCCeECCcCCCc
Confidence 456889999964
No 196
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.05 E-value=29 Score=27.01 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy2248 17 QITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62 (102)
Q Consensus 17 ~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~ 62 (102)
++..|..+.|.+-+++-.+...| +++..++.++..++.+.+.++
T Consensus 45 ~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 45 RLEALRSERNKLSKEIGKLKREG--KDTTEIQNRVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSC--SCTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--ccHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444 233444444444444444443
No 197
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=22.98 E-value=17 Score=18.04 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2el6_A 10 VNPYKCSQCEKS 21 (46)
T ss_dssp CCSEECSSSSCE
T ss_pred CCCeECCCCCcc
Confidence 456899999964
No 198
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=22.96 E-value=1.8e+02 Score=19.50 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 13 ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 13 ~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
.....|..+..+|..+...+..|...+--+.|..+....+.+......|...
T Consensus 151 ~~e~dL~~~~~~v~~l~~~a~~L~~~~~~~~a~~i~~~~~~l~~~W~~L~~~ 202 (218)
T 3edu_A 151 AFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDA 202 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999876677888888899998888887654
No 199
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.76 E-value=17 Score=18.05 Aligned_cols=12 Identities=25% Similarity=0.550 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em2_A 10 EKPFKCKECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCEECCcCCch
Confidence 456889999964
No 200
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.75 E-value=17 Score=18.04 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emf_A 10 GKHFECTECGKA 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CCCeECCCCCch
Confidence 456899999964
No 201
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.73 E-value=19 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.720 Sum_probs=9.1
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2en8_A 10 EKSHTCDECGKN 21 (46)
T ss_dssp CSSEECTTTCCE
T ss_pred CCCeECCCcCcc
Confidence 455889999963
No 202
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=22.73 E-value=19 Score=17.76 Aligned_cols=12 Identities=17% Similarity=0.435 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em0_A 10 EKTWKCRECDMC 21 (46)
T ss_dssp CCCCCCSSSCCC
T ss_pred CcCeECCCCCcc
Confidence 456889999964
No 203
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.56 E-value=19 Score=17.71 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq0_A 10 EKPYKCHECGKV 21 (46)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCeECCCCCch
Confidence 456899999963
No 204
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=22.50 E-value=1.6e+02 Score=18.95 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy2248 24 KINNLVSEAERVGMEGSVEKAQGLMKLCDQLK 55 (102)
Q Consensus 24 ~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk 55 (102)
.+..++.++..+-..|+.++|...+.++-.+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 34 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN 34 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 35677889999999999999999998876653
No 205
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.41 E-value=1.9e+02 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy2248 42 EKAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 42 deA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
+++..++.++..++.+.+.++..
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~ 86 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEA 86 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888887777777766553
No 206
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.26 E-value=19 Score=20.82 Aligned_cols=10 Identities=30% Similarity=1.085 Sum_probs=7.2
Q ss_pred cccchhhhhh
Q psy2248 84 MEVCTVCGAF 93 (102)
Q Consensus 84 l~VCeVCGA~ 93 (102)
-.||.-||-|
T Consensus 43 H~vc~~CG~Y 52 (60)
T 2zjr_Z 43 HHICPNCGYY 52 (60)
T ss_dssp TBCCTTTCBS
T ss_pred ceEcCCCCcC
Confidence 3788888865
No 207
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.20 E-value=17 Score=17.91 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ep2_A 10 EKPYECSICGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCcCCCCCCcc
Confidence 456889999964
No 208
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=22.13 E-value=17 Score=17.89 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ema_A 10 EKRYKCNECGKV 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CcCcCCCCCcch
Confidence 456899999964
No 209
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.98 E-value=17 Score=17.89 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yu8_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CSSEECSSSCCE
T ss_pred CCCeECCcCCch
Confidence 456899999964
No 210
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.93 E-value=21 Score=19.93 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=5.1
Q ss_pred ccchhhhh
Q psy2248 85 EVCTVCGA 92 (102)
Q Consensus 85 ~VCeVCGA 92 (102)
.+|++||.
T Consensus 5 y~C~~C~k 12 (60)
T 4gzn_C 5 FFCNFCGK 12 (60)
T ss_dssp EECTTTCC
T ss_pred ccCCCCCC
Confidence 56777764
No 211
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=21.77 E-value=18 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em9_A 10 EKPYNCKECGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCccccc
Confidence 456899999963
No 212
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.59 E-value=18 Score=17.82 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ene_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp SSSEECSSSCCE
T ss_pred CCCeECCCCCch
Confidence 456899999964
No 213
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.50 E-value=18 Score=17.88 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.4
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em8_A 10 EKPYKCVECGKG 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECcccCch
Confidence 456899999964
No 214
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=18 Score=17.82 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2enc_A 10 EKPFKCEECGKGF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCcCCCCCCCcC
Confidence 4568999999643
No 215
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=21.49 E-value=19 Score=17.72 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2el4_A 10 VKPYGCSQCAKT 21 (46)
T ss_dssp CCSEECSSSSCE
T ss_pred CCceECCCCCch
Confidence 455889999964
No 216
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.40 E-value=1.7e+02 Score=18.63 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy2248 29 VSEAERVGMEGSVEKAQGLMKLCDQLK 55 (102)
Q Consensus 29 l~eaE~LGeeG~VdeA~~l~~~ve~Lk 55 (102)
-.++|.|...|+.|+|..-..++-.+-
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 368999999999999987777666543
No 217
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=18 Score=17.80 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=9.2
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em7_A 10 EKPYKCEECGKG 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCccCCCccch
Confidence 456899999963
No 218
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=21.15 E-value=25 Score=18.25 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=4.3
Q ss_pred ccchhhhh
Q psy2248 85 EVCTVCGA 92 (102)
Q Consensus 85 ~VCeVCGA 92 (102)
..|++||.
T Consensus 3 ~~C~~C~~ 10 (60)
T 2adr_A 3 FVCEVCTR 10 (60)
T ss_dssp BCCTTTCC
T ss_pred CcCCCCcc
Confidence 35666654
No 219
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.98 E-value=1.4e+02 Score=19.72 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy2248 43 KAQGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 43 eA~~l~~~ve~Lk~ek~~l~~~ 64 (102)
+-+....++|+|+.+...+...
T Consensus 86 ~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 86 KLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchhhhhH
Confidence 4456677888888877666543
No 220
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.83 E-value=21 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=9.6
Q ss_pred ccccchhhhhhhh
Q psy2248 83 QMEVCTVCGAFLI 95 (102)
Q Consensus 83 kl~VCeVCGA~Ls 95 (102)
.-.+|+.||-...
T Consensus 35 p~~~C~~CGE~~~ 47 (78)
T 3ga8_A 35 HGLYCVHCEESIM 47 (78)
T ss_dssp EEEEETTTCCEEC
T ss_pred eeEECCCCCCEEE
Confidence 3489999997543
No 221
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.82 E-value=1.3e+02 Score=17.89 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy2248 23 EKINNLVSEAERVGMEGSVEKAQGLMKLC 51 (102)
Q Consensus 23 ~~I~~ll~eaE~LGeeG~VdeA~~l~~~v 51 (102)
.-.-.=+..-|.|...|++++|...+..+
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nA 43 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNA 43 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344466788999999999888766443
No 222
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.72 E-value=19 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=9.6
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emm_A 10 ERPHKCNECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCCChhh
Confidence 4568899999643
No 223
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.70 E-value=23 Score=19.10 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=4.4
Q ss_pred ccchhhhh
Q psy2248 85 EVCTVCGA 92 (102)
Q Consensus 85 ~VCeVCGA 92 (102)
.+|+.||+
T Consensus 6 ~~CP~C~~ 13 (50)
T 1pft_A 6 KVCPACES 13 (50)
T ss_dssp CSCTTTSC
T ss_pred EeCcCCCC
Confidence 35555555
No 224
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=20.57 E-value=19 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.0
Q ss_pred hhccccchhhhhh
Q psy2248 81 EKQMEVCTVCGAF 93 (102)
Q Consensus 81 ~qkl~VCeVCGA~ 93 (102)
..+..+|++||.-
T Consensus 19 Gek~y~C~~C~k~ 31 (133)
T 2lt7_A 19 GRVYYICIVCKRS 31 (133)
T ss_dssp TEEEEEETTTCCE
T ss_pred CCcCeECCCCCCC
Confidence 3577999999963
No 225
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.56 E-value=2.6e+02 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHhh
Q psy2248 15 AEQITLLSEKINNLVSEAERVGMEGSVEKA-QGLMKLCDQLKEEREMLRKQ 64 (102)
Q Consensus 15 ~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA-~~l~~~ve~Lk~ek~~l~~~ 64 (102)
.+++..+++++.++.++-+.|-+.- ++. ..+-.++..|+.+...|+++
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~--~~~~~~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWA--DKYKHETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555542221 111 23345555566666666554
No 226
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.52 E-value=16 Score=18.18 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=8.6
Q ss_pred ccchhhhhhhh
Q psy2248 85 EVCTVCGAFLI 95 (102)
Q Consensus 85 ~VCeVCGA~Ls 95 (102)
..|.||.+.+-
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 57999998654
No 227
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.40 E-value=1.7e+02 Score=18.46 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2248 20 LLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54 (102)
Q Consensus 20 ~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 54 (102)
...-.-..+.-+|=....+|++++|..++.+.+.-
T Consensus 15 ~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 15 AYAGDARSKLLEALKAAENGDFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33344445556667788999999999999999874
No 228
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=20.39 E-value=2.1e+02 Score=20.15 Aligned_cols=33 Identities=21% Similarity=0.065 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy2248 22 SEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54 (102)
Q Consensus 22 ~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 54 (102)
+++|+.++.+-=.....++|++|..+..+++..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~ 41 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQD 41 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 355666666666677788899998888887663
No 229
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.28 E-value=19 Score=19.09 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.3
Q ss_pred ccccchhhhhhhh
Q psy2248 83 QMEVCTVCGAFLI 95 (102)
Q Consensus 83 kl~VCeVCGA~Ls 95 (102)
+...|++||.+|-
T Consensus 10 ~pt~C~~C~~~l~ 22 (50)
T 1ptq_A 10 SPTFCDHCGSLLW 22 (50)
T ss_dssp SCCBCTTTCCBCC
T ss_pred CCCCcCCCCceee
Confidence 3478999999874
No 230
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=22 Score=17.50 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=9.7
Q ss_pred hccccchhhhhhh
Q psy2248 82 KQMEVCTVCGAFL 94 (102)
Q Consensus 82 qkl~VCeVCGA~L 94 (102)
.+...|++||.-.
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytt_A 10 EKPYQCSECGKSF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CCCeeCCCCCccc
Confidence 4568999999643
No 231
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.26 E-value=1.7e+02 Score=21.56 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHh
Q psy2248 24 KINNLVSEAERVGMEGS--VEKAQGLMKLCDQLKEEREMLRK 63 (102)
Q Consensus 24 ~I~~ll~eaE~LGeeG~--VdeA~~l~~~ve~Lk~ek~~l~~ 63 (102)
++..+..++..|..... ++.=..+-.+++.|+.+.++|..
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35555566666665555 45556677788888888888765
No 232
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.20 E-value=20 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.3
Q ss_pred hccccchhhhhh
Q psy2248 82 KQMEVCTVCGAF 93 (102)
Q Consensus 82 qkl~VCeVCGA~ 93 (102)
.+...|++||.-
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2ytk_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp SCSEECSSSCCE
T ss_pred CCCEeCCcCCCc
Confidence 456889999964
No 233
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.10 E-value=2.4e+02 Score=20.03 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2248 12 NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65 (102)
Q Consensus 12 ~~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~~ 65 (102)
......|..++..|..+...++.|- +|+...|-.+...+..|......|...+
T Consensus 168 e~ie~dL~~~e~~i~~l~~~a~~L~-~~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 168 GEVERDLDKADSMIRLLFNDVQTLK-DGRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999999999999886 5788889999999999999888887654
No 234
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.09 E-value=3.3e+02 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=8.8
Q ss_pred HHHHH----HHH-HHHHHHHHHHHHh
Q psy2248 43 KAQGL----MKL-CDQLKEEREMLRK 63 (102)
Q Consensus 43 eA~~l----~~~-ve~Lk~ek~~l~~ 63 (102)
++..+ +++ +..|+.+...++.
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~ 125 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAK 125 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555 555 5556555555443
No 235
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.01 E-value=3.5e+02 Score=21.92 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2248 16 EQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57 (102)
Q Consensus 16 e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e 57 (102)
.-+.+.+..|+..+++-+.|-.+|==.+|..+-.++..|+..
T Consensus 541 ~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 541 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777788888777777666666666553
Done!