RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2248
         (102 letters)



>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 158

 Score = 25.5 bits (56), Expect = 1.1
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4  SRLSQSQ---QNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
           ++ Q+Q    N   +   +    I  LV+E  R+         Q L+  CD++
Sbjct: 7  GKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGRRLANVMMGPYRQDLLAKCDRV 60


>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
          [TaxId: 562]}
          Length = 88

 Score = 23.9 bits (52), Expect = 2.7
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 8/41 (19%)

Query: 17 QITLLSEKINNLVSEAE--------RVGMEGSVEKAQGLMK 49
          Q+ LL+ +IN+L             R G+   V + + L+ 
Sbjct: 27 QVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 67


>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
          [TaxId: 274]}
          Length = 84

 Score = 23.5 bits (51), Expect = 4.0
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 8/41 (19%)

Query: 17 QITLLSEKINNLVSEAE--------RVGMEGSVEKAQGLMK 49
          Q+ LL+ +IN L    +          G+   V + + L++
Sbjct: 25 QVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLR 65


>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 85

 Score = 23.1 bits (50), Expect = 4.4
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 8/41 (19%)

Query: 17 QITLLSEKINNLVSEAE--------RVGMEGSVEKAQGLMK 49
          QI +L+E+INNL             R G+   V K + L+ 
Sbjct: 26 QIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLA 66


>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 37

 Score = 22.0 bits (47), Expect = 5.3
 Identities = 6/20 (30%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 80 QEKQMEVCTVCGAFLIVGDA 99
          + K++ +C +CG +  V +A
Sbjct: 1  EIKKVYICPICG-YTAVDEA 19


>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 119

 Score = 23.1 bits (50), Expect = 7.2
 Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4  SRLSQSQ---QNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
          S+++Q++   ++ NA       + I  ++ EA + G   + ++ + ++  C  L
Sbjct: 23 SKMNQAKGWLRDPNAPPGDAGEQAIRQILDEAGKAGELCAGKERREILGTCKTL 76


>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli
          [TaxId: 562]}
          Length = 307

 Score = 23.0 bits (49), Expect = 9.2
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 32 AERVGMEGSVEKAQGLMKLCD-QLKEEREMLRKQNDNN 68
          AE++G++GSV+K     +L + +L +  ++ R Q+ +N
Sbjct: 38 AEQLGLQGSVDKDV-FTRLLEGRLPDGADLSRMQDGSN 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.124    0.332 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,793
Number of extensions: 11357
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 15
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)