RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy225
(450 letters)
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 192 bits (489), Expect = 4e-59
Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 14/202 (6%)
Query: 260 MEKHIEENVNQHMLLMCSLVSKQQQQISTLKSALNKVTL--------NYSGTLIWKITDY 311
V ++ L+ S +S+ Q +S L + L +Y+G LIWKI DY
Sbjct: 26 SVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDY 85
Query: 312 SLKCQES-----IELLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSVYIKLLPGEYDAL 366
+ QE+ + L S FYT FGYK+ ++LNG+G G+GTH+S++ ++ GEYDAL
Sbjct: 86 KRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDAL 145
Query: 367 LKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPRFVSLDTIR 426
L WPF V+ L DQ ++ ++F PDP +F++P+ + ++ G P FV+ +
Sbjct: 146 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM-NIASGCPVFVAQTVLE 204
Query: 427 KRQFLKDDAIFIRVKVDPSKIV 448
++KDD IFI+V VD S +
Sbjct: 205 NGTYIKDDTIFIKVIVDTSDLP 226
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF
receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB:
1kzz_A 1l0a_A 1zms_A 1rf3_A
Length = 192
Score = 190 bits (484), Expect = 7e-59
Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 14/191 (7%)
Query: 271 HMLLMCSLVSKQQQQISTLKSALNKV--------TLNYSGTLIWKITDYSLKCQES---- 318
+ L+ S +S+ Q +S L + T +Y+G LIWKI DY + QE+
Sbjct: 1 NTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGK 60
Query: 319 -IELLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSVYIKLLPGEYDALLKWPFSHSVSF 377
+ L S FYT FGYK+ ++LNG+G G+GTH+S++ ++ GEYDALL WPF V+
Sbjct: 61 TLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL 120
Query: 378 TLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPRFVSLDTIRKRQFLKDDAIF 437
L DQ ++ ++F PDP +F++P+ + ++ G P FV+ + ++KDD IF
Sbjct: 121 MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM-NIASGCPVFVAQTVLENGTYIKDDTIF 179
Query: 438 IRVKVDPSKIV 448
I+V VD S +
Sbjct: 180 IKVIVDTSDLP 190
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 184 bits (468), Expect = 2e-56
Identities = 62/194 (31%), Positives = 116/194 (59%), Gaps = 9/194 (4%)
Query: 261 EKHIEENVNQHMLLMCSLVSKQQQQISTLKSALNKV-TLNYSGTLIWKITDYSLKCQESI 319
++ E ++ + + + + ++ L+ + ++ Y G IWKI+D++ K QE++
Sbjct: 1 DQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAV 60
Query: 320 -----ELLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSVYIKLLPGEYDALLKWPFSHS 374
+ SP+FYTS++GYK+ + ++LNG+G G GTH+S++ ++ G DALL+WPF+
Sbjct: 61 AGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 120
Query: 375 VSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPRFVSLDTIRKR-QFLKD 433
V+ L DQ+ + +V+++F PD T +FQRP ++ G P F + + + +++D
Sbjct: 121 VTLMLLDQNNRE-HVIDAFRPDVTSSSFQRPVNDM-NIASGCPLFCPVSKMEAKNSYVRD 178
Query: 434 DAIFIRVKVDPSKI 447
DAIFI+ VD + +
Sbjct: 179 DAIFIKAIVDLTGL 192
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling
protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A
1lb4_A
Length = 160
Score = 173 bits (441), Expect = 6e-53
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 299 NYSGTLIWKITDYSLKCQESIE-----LLSPSFYTSQFGYKLQVSLFLNGNGAGE-GTHV 352
+G IWKI ++ + + E + SP FYT + GYKL + L L A ++
Sbjct: 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYI 61
Query: 353 SVYIKLLPGEYDALLKWPFSHSVSFTLFDQSEKPV--NVVESFVPDPTWENFQRPSKQPD 410
S+++ + GEYD+ L WPF ++ T+ DQSE PV N E P FQRP+ +
Sbjct: 62 SLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRN 121
Query: 411 SLGFGFPRFVSLDTIRKRQFLKDDAIFIRVKVDPSK 446
GFG+ F+ L+ +R+R F+KDD + +R +V
Sbjct: 122 PKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF 157
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich,
protein-peptide complex, apoptosis; 2.00A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A
1d01_A 1d0a_A
Length = 168
Score = 172 bits (438), Expect = 2e-52
Identities = 61/175 (34%), Positives = 110/175 (62%), Gaps = 14/175 (8%)
Query: 279 VSKQQQQISTLKSALNKVTLNYSGTLIWKITDYSLKCQESIE-----LLSPSFYTSQFGY 333
++ +Q++ ++++ Y G IWKI+D++ K QE++ + SP+FYTS++GY
Sbjct: 2 MADLEQKVLEMEAS------TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGY 55
Query: 334 KLQVSLFLNGNGAGEGTHVSVYIKLLPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESF 393
K+ + ++LNG+G G GTH+S++ ++ G DALL+WPF+ V+ L DQ+ + +V+++F
Sbjct: 56 KMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNRE-HVIDAF 114
Query: 394 VPDPTWENFQRPSKQPDSLGFGFPRFVSLDTIRKR-QFLKDDAIFIRVKVDPSKI 447
PD T +FQRP ++ G P F + + + +++DDAIFI+ VD + +
Sbjct: 115 RPDVTSSSFQRPVNDM-NIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 168
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation
pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A
3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Length = 145
Score = 83.4 bits (206), Expect = 2e-19
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 301 SGTLIWKITDYSLKCQESIE-LLSPSFYT-SQFGYKLQVSLFLNGNGAGEGTHVSVYIKL 358
+ +W I ++S +E E + S +F + + K + + G ++S+Y+ L
Sbjct: 10 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 69
Query: 359 LPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPR 418
+ K F++ + + +ES + +GF +
Sbjct: 70 VSCP-----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGK----------DWGFKK 114
Query: 419 FVSLDTIRKRQ--FLKDDAIFIRVKVD 443
F+ D + L DD + + +V
Sbjct: 115 FIRRDFLLDEANGLLPDDKLTLFCEVS 141
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 78.1 bits (192), Expect = 2e-18
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 178 ANDCYKRLVACRYCSKSYVADTLVTHQTKCTRAPIPCPNQCEMVALPREELDVHIKEHCN 237
+ KR C YC+K +V DT+ +HQ +C R P+ CPNQC + + RE+L H+K+ CN
Sbjct: 3 SGSSGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCN 62
Query: 238 SLLV 241
+ LV
Sbjct: 63 TALV 66
Score = 57.7 bits (139), Expect = 4e-11
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 127 CPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGHK-IQRRLMAKHRANDCYKRL 185
+R C YC + F ++ H C V C N+CG + R + H + C L
Sbjct: 6 SGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL 65
Query: 186 V 186
V
Sbjct: 66 V 66
Score = 32.6 bits (74), Expect = 0.025
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 74 LIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPC-NKC-LAAIPKTLMEDHSKFTCPERI 131
C + C +++ H C + C N+C + + + + H K +C +
Sbjct: 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL 65
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 78.0 bits (192), Expect = 3e-18
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 145 EMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRANDCYKRLVACRYCSKSYVADTLVTHQ 204
H CS+ ++ C N+C K+ RR + H +DC KR + C +C + + +H+
Sbjct: 4 GSSGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHE 63
Query: 205 TKCTRAPIPCPN 216
C + +
Sbjct: 64 GMCPQESSGPSS 75
Score = 68.4 bits (167), Expect = 8e-15
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 91 KSLKGHLQTCKYDAIPC-NKCLAAIPKTLMEDHSKFTCPERITTCQYCLESFSGMEMEDH 149
GHL TC ++ IPC N+C + + + H + CP+R C++C FSG E H
Sbjct: 3 SGSSGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESH 62
Query: 150 TGHCSYEMVYCEN 162
G C E +
Sbjct: 63 EGMCPQESSGPSS 75
Score = 44.9 bits (106), Expect = 1e-06
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 203 HQTKCTRAPIPCPNQCEMVALPREELDVHIKEHCNSLLVSCVFKDAGCRFKGMRGETMEK 262
H C+ IPCPN+C M L R +L H++ C + C F C GE E
Sbjct: 8 HLNTCSFNVIPCPNRCPMK-LSRRDLPAHLQHDCPKRRLKCEF----CGCD-FSGEAYES 61
Query: 263 HIEE 266
H
Sbjct: 62 HEGM 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 70.1 bits (171), Expect = 2e-14
Identities = 23/108 (21%), Positives = 38/108 (35%)
Query: 54 RTPLSLTPDVSDSEKDTMGSLIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPCNKCLAA 113
L D+ + EGC EL+ L+ H C++ + C +C
Sbjct: 60 NEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRP 119
Query: 114 IPKTLMEDHSKFTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCE 161
K + H CP R +C C S + + E H +C + +
Sbjct: 120 FQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLALEHHH 167
Score = 68.6 bits (167), Expect = 7e-14
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 4/126 (3%)
Query: 90 LKSLKGHLQTCKYDAIPCNKCLAAIPKTLMEDHSKFTCPERITTCQYCLESFSGMEMEDH 149
+KS++ C D + + + CL +EDH
Sbjct: 46 IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV---KCPNEGCLHKMELRHLEDH 102
Query: 150 TGHCSYEMVYCENKCGHKIQRRLMAKHRANDCYKRLVACRYCSKSYVADTLVTHQTKCTR 209
HC + ++ C C Q+ + H DC +R V+C C+ S + H C
Sbjct: 103 QAHCEFALMDCPQ-CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPL 161
Query: 210 APIPCP 215
A
Sbjct: 162 ALEHHH 167
Score = 34.7 bits (79), Expect = 0.031
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 164 CGHKIQRRLMAKHRA--NDCYKRLVAC--RYCSKSYVADTLVTHQTKCTRAPIPCPNQCE 219
+ + + +V C C L HQ C A + CP C+
Sbjct: 59 DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQ-CQ 117
Query: 220 MVALPREELDVHIKEHCNSLLVSCVFKDAGCRFKGMRGETMEKHIEE 266
+ +++HI + C VSC C E E H +
Sbjct: 118 RP-FQKFHINIHILKDCPRRQVSCDN----CAASMAF-EDKEIHDQN 158
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase;
1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A
3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Length = 155
Score = 66.8 bits (163), Expect = 2e-13
Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 20/144 (13%)
Query: 302 GTLIWKITDYSLKCQESIELLSPSFYTSQFGYKLQVSLFLNGNGAGEGT-HVSVYIKLLP 360
T + + +S + ES+ LSP + ++ + V +++
Sbjct: 19 ATFQFTVERFS-RLSESV--LSPPCFV--RNLPWKIMVMPRFYPDRPHQKSVGFFLQCNA 73
Query: 361 GEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPRFV 420
W + + + + + +GF F+
Sbjct: 74 ESDST--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN----------DWGFSNFM 121
Query: 421 SLDTI--RKRQFLKDDAIFIRVKV 442
+ + ++ F+ DD + V V
Sbjct: 122 AWSEVTDPEKGFIDDDKVTFEVFV 145
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 58.5 bits (141), Expect = 2e-11
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 118 LMEDHSKFTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHR 177
H + CP R+ CQ+C S +++++H +C C CG + + + H
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELC-GNCGRNVLVKDLKTHP 62
Query: 178 AN 179
Sbjct: 63 EV 64
Score = 52.7 bits (126), Expect = 3e-09
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 172 LMAKHRANDCYKRLVACRYCSKSYVADTLVTHQTKCTRAPIPCPNQCEMVALPREELDVH 231
+ H +C RL C++C L H+ C C N C + ++L H
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGN-CGR-NVLVKDLKTH 61
Query: 232 IKEH 235
+
Sbjct: 62 PEVC 65
Score = 44.2 bits (104), Expect = 2e-06
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 90 LKSLKGHLQT-CKYDAIPCNKCLAAIPKTLMEDHSKFTCPERITTCQYCLESFSGMEMED 148
GH +T C C C + +++H C R C C + +++
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSILKLKEHED-YCGARTELCGNCGRNVLVKDLKT 60
Query: 149 HTGHCSYE 156
H C E
Sbjct: 61 HPEVCGRE 68
Score = 28.8 bits (64), Expect = 0.67
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 74 LIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPCNKCLAAIPKTLMEDHSKFTCPER 130
L C H C + LK H C C C + ++ H + C
Sbjct: 17 LAVCQH----CDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPE-VCGRE 68
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 52.2 bits (125), Expect = 1e-07
Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 19/150 (12%)
Query: 301 SGTLIWKITDYSLKCQESIE-LLSPSFYT-SQFGYKLQVSLFLNGNGAGEGTHVSVYIKL 358
+ +W I ++S +E E + S +F + + K + + G ++S+Y+ L
Sbjct: 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 65
Query: 359 LPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPR 418
+ K F++ + + +ES F + +GF +
Sbjct: 66 VSCP-----KSEVRAKFKFSILNAKGEETKAMES----QRAYRFVQGK------DWGFKK 110
Query: 419 FVSLDTIRKRQ--FLKDDAIFIRVKVDPSK 446
F+ + L DD + + +V +
Sbjct: 111 FIRRGFLLDEANGLLPDDKLTLFCEVSVVQ 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 41/244 (16%), Positives = 75/244 (30%), Gaps = 91/244 (37%)
Query: 226 EELDVHIKEHCNSLLVSCVF---KDAGCRFKGMRGETMEKHIEENVNQHMLLMCSLVSKQ 282
D H K+ ++ V + F G +G K I EN + ++ +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG----KRIREN---YSAMIFETIVDG 1699
Query: 283 QQQISTLKSALNKVTLNYSGTLIWKITDYSLKCQESIELLSPSFYTSQFGYKLQVSLFL- 341
+ + + +N+ T Y+ + ++ LLS + +T Q +L L
Sbjct: 1700 KLKTEKIFKEINE-----------HSTSYTFRSEK--GLLSATQFT-------QPALTLM 1739
Query: 342 ----------NGNG------AGEGTHVSVYIKLLPGEYDALLKWPFSHSVSFTLFDQSEK 385
G AG H S+ GEY AL S + ++
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAG---H-SL------GEYAALA----SLADVMSIESL--- 1782
Query: 386 PVNVVESFVPDPTWENFQRPSKQPDSLGFGFPRFVSLDTIRKRQFLKDDAIFIRVKVDPS 445
V VV F R G + + R + + + ++P
Sbjct: 1783 -VEVV-----------FYR--------G----MTMQVAVPRDELGRSNYGM---IAINPG 1815
Query: 446 KIVA 449
++ A
Sbjct: 1816 RVAA 1819
Score = 35.0 bits (80), Expect = 0.059
Identities = 66/415 (15%), Positives = 112/415 (26%), Gaps = 188/415 (45%)
Query: 57 LSLTPDVSDSEKDTMGSLIHCIHYKEGC---KWYDELKSLKGHLQTCKYDAIPCNKCLAA 113
L D+EK + +G +W L+ P L +
Sbjct: 196 SELIRTTLDAEK----------VFTQGLNILEW------LENP------SNTPDKDYLLS 233
Query: 114 IPKTLMEDHSKFTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGH--KIQRR 171
IP +CP I Q H Y +V + +++
Sbjct: 234 IP---------ISCP-LIGVIQLA--------------H--Y-VVTAKLLGFTPGELRSY 266
Query: 172 LMAKHRANDCYKRLVACRYCSKSYVADT-------------------LVTHQT--KCTRA 210
L A + LV + D+ + ++ +
Sbjct: 267 LKG---ATGHSQGLVTAVAIA---ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 211 P------------IPCPNQCEMVA---LPREELDVHIKEHCNSLLVSCVFKDAGCRFKGM 255
P +P P M++ L +E++ ++ NS L +
Sbjct: 321 PSILEDSLENNEGVPSP----MLSISNLTQEQVQDYV-NKTNSHLPA------------- 362
Query: 256 RGETMEKHIE-ENVN--QHMLLMC----SLVSKQQQQISTLKSALNKVTLNYSGTLIWKI 308
K +E VN +++++ SL L L K SG +I
Sbjct: 363 -----GKQVEISLVNGAKNLVV-SGPPQSLYG--------LNLTLRKAKAP-SGLDQSRI 407
Query: 309 TDYSLKCQESIELLSPSFYTSQFGYKLQVSL-FLNGNGAGEGTHVSVYIKLLPGEYDALL 367
+S + F +F L V+ F H S LL D +
Sbjct: 408 P-FS---ER-----KLKFSN-RF---LPVASPF----------H-S---HLLVPASDLIN 440
Query: 368 KWPFSHSVSFTLFDQSE--KPV--------------NVVESFVP----DPT-WEN 401
K ++VS F+ + PV ++ E V P WE
Sbjct: 441 KDLVKNNVS---FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 6e-05
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 27/111 (24%)
Query: 362 EYDALLKWPFSHSVSFTLFDQ-SEKPVNVVESFV-----PDPTW--ENFQRPSKQP---- 409
E D ++ + S + LF K +V+ FV + + + +QP
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 410 -------DSLGFGFPRFVSLDTIRKRQFLKDDAIFIR---VKVDPSKIVAV 450
D L F + R + +LK +R +++ P+K V +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLI 155
Score = 41.0 bits (95), Expect = 7e-04
Identities = 35/285 (12%), Positives = 79/285 (27%), Gaps = 103/285 (36%)
Query: 189 RYCSKSYVADTLVTHQTKCTRAPIPCPNQCEMVALPREELD---------VHIKEHCNSL 239
+ C+ L Q + ++ + + + + + K + N L
Sbjct: 190 KNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 240 LV------SCVFK--DAGCRFKGMRGETMEKHIEENVNQHMLLMCSLVSKQQQQISTLKS 291
LV + + + C+ L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCK------------------------------------IL-- 269
Query: 292 ALNKVTLNYSGTLIWKITDY---SLKCQESIELLSPSFYTSQFGYKLQVSLFLNGNGAGE 348
+T + +TD+ + S++ S + + SL L
Sbjct: 270 ----LTTRFKQ-----VTDFLSAATTTHISLDHHSMTLTPDE-----VKSLLLK------ 309
Query: 349 GTHVSVYIKLLPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDP-TWENFQRPSK 407
++ + LP E L P S+ + ES TW+N++ +
Sbjct: 310 --YLDCRPQDLPRE--VLTTNPRRLSI-------------IAESIRDGLATWDNWKHVNC 352
Query: 408 QPDSLGFGFPRFV-SLDTIRKRQFLKDDAIFIR-VKVDPSKIVAV 450
D L + L+ R+ ++F + P+ ++++
Sbjct: 353 --DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSL 394
Score = 34.8 bits (79), Expect = 0.062
Identities = 48/368 (13%), Positives = 101/368 (27%), Gaps = 90/368 (24%)
Query: 52 KSRTPLSLTPD--VSDSEKDTMGSLIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPCNK 109
+ L T V+D + I H+ DE+KSL C+ +P
Sbjct: 265 SCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREV 322
Query: 110 C------LAAIPKTLMEDHS------KFTCPERITTCQYCLESFSGMEMEDHTGHCSYEM 157
L+ I +++ + + C + T + L E ++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDR 377
Query: 158 --VYCENKCGHKIQRRLMA-----------KHRANDCYKR-LVACRYCSKSYVADTLVTH 203
V+ + I L++ N +K LV + + ++
Sbjct: 378 LSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--- 431
Query: 204 QTKCTRAPIPCPNQCEMVALPREELDVHIKEHCNSLLVSCVFKDAGCRFKGMRGETMEKH 263
E+ E +H +V + ++++
Sbjct: 432 -------------YLELKVKLENEYALHRS------IVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 264 IEENVNQHMLLMCSLVSKQQQQISTLKSALNKVTLNYSGTLIW---KI--TDYSLKCQES 318
++ H+ K + + V L++ + KI + S
Sbjct: 473 FYSHIGHHL--------KNIEH-PERMTLFRMVFLDFR----FLEQKIRHDSTAWNASGS 519
Query: 319 IE--LLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSVYIKLLPGEYDALLKWPFSHSVS 376
I L FY ++ N V+ + LP + L+ ++ +
Sbjct: 520 ILNTLQQLKFYKP----------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 377 FTLFDQSE 384
L + E
Sbjct: 570 IALMAEDE 577
Score = 31.7 bits (71), Expect = 0.56
Identities = 46/342 (13%), Positives = 90/342 (26%), Gaps = 116/342 (33%)
Query: 2 VRSFTSWTKTL------SFPARLNTHHKQQISSKENT-----------LSSSSSSHSSDL 44
+F K L L+ IS ++ L DL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 45 PMICSQTKSRTPLSLT---------PDVSD----SEKDTMGSLIHCIHYKEGCKWYDELK 91
P + + P L+ D D + ++I E + L+
Sbjct: 319 P---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII------ESS--LNVLE 367
Query: 92 S--LKGHLQTCKYDAI-PCNKCLAAIPKTLME---DHSKFTCPERITTCQYCLESFSGME 145
+ ++ P + A IP L+ + + L +S +E
Sbjct: 368 PAEYRKMFDRL---SVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSLVE 418
Query: 146 MEDHTGHCSYEMVYCENKCG-------HKI---QRRLMAKHRANDC-------Y------ 182
+ S +Y E K H+ + ++D Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 183 ---------------------------K-RLVACRYCSKSYVADTLVTHQTKCTRAPIP- 213
K R + + + + +TL Q K + I
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKPYICD 536
Query: 214 -CPNQCEMVA-----LPREELDVHIKEHCNSLLVSCVFKDAG 249
P +V LP+ E ++ ++ + L ++ + +D
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 33.1 bits (75), Expect = 0.039
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 142 SGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRANDCYKRLVACRY-CSKSYVADTL 200
SGME E HC V C + RR M + L+ C C + +
Sbjct: 6 SGMEEELQHSHC----VNC-------VSRRCMTRPEP-GISCDLIGCPLVCGAVFHSCKA 53
Query: 201 VTHQTKCTRAPIPCPNQ---CEMVALPREELDVHIKEHCNSLLVSC 243
H+ C +PC N C + R ++ H+ E C + +
Sbjct: 54 DEHRLLCPFERVPCLNSDFGCPFT-MARNKVAEHL-EMCPASVSGP 97
Score = 30.0 bits (67), Expect = 0.48
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 131 ITTCQY-CLESFSGMEMEDHTGHCSYEMVYCENK---CGHKIQRRLMAKHRANDCYKRLV 186
+ C C F + ++H C +E V C N C + R +A+H C +
Sbjct: 37 LIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM-CPASVS 95
Query: 187 AC 188
Sbjct: 96 GP 97
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 32.1 bits (73), Expect = 0.12
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 54 RTPLSLTPDVSDS--EKDTMGSLIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPCNKC 110
L D+ +++ + ++ C + EGC EL+ L+ H C++ + +
Sbjct: 60 NEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALLEHHHH 116
Score = 30.2 bits (68), Expect = 0.47
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 90 LKSLKGHLQTCKYDAIPCNKCLAAIPKTLME--DHSKFTCPERITTCQYCLESFSGMEME 147
+KS++ C D + CP CL +E
Sbjct: 46 IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE-----GCLHKMELRHLE 100
Query: 148 DHTGHCSYEMVYCENKCGH 166
DH HC + ++ + H
Sbjct: 101 DHQAHCEFALLEHHH-HHH 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.17
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 89 ELKSLKGHLQTCKY--DAIPCNKCLAAIPKTLME 120
LK L+ L+ Y D+ P L AI T ME
Sbjct: 21 ALKKLQASLK--LYADDSAP---AL-AIKAT-ME 47
Score = 31.5 bits (70), Expect = 0.26
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 13/41 (31%)
Query: 282 QQQQISTLKSALNKVTLNYSGTLIWKITDY--SLKCQESIE 320
++Q + L+++L K+ Y+ D +L + ++E
Sbjct: 18 EKQALKKLQASL-KL---YA-------DDSAPALAIKATME 47
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.1 bits (64), Expect = 1.2
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 106 PCNKCLAAIPKTLMEDHSKFTCPERITTCQYCLESFSGMEME-DHTGHCSYEMVYCENKC 164
C C A + L + + C C YC F E++ +H C Y+ + C +C
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTC-LEC 75
Query: 165 GHKIQ 169
+
Sbjct: 76 MRTFK 80
Score = 27.9 bits (61), Expect = 2.8
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 90 LKSLKGHLQTCKYDAIPCNKCLAAIPKTLMEDHSKFTCPERITTCQYCLESF-SGMEMED 148
L H + C+ +A C C ++ + C + TC C+ +F S +
Sbjct: 29 LLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWR 87
Query: 149 H 149
H
Sbjct: 88 H 88
>1x36_A Coat protein; T=1 capsid, N-ARM, icosahedral virus; 2.70A {Sesbania
mosaic virus} PDB: 1vb4_A
Length = 237
Score = 29.9 bits (66), Expect = 1.3
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 44 LPMICSQTKSRTPLSLTPDVSDSEKDTMGSLIHCIHYKEGCKWYDELKSLKGHLQTCKYD 103
+P S T + D++D+ ++ L + Y G W G C +
Sbjct: 97 IPSCPSSTAGSIHMGFQYDMADTVPVSVNQLSNLRGYVSGQVW-------SGSAGLCFIN 149
Query: 104 AIPCNKCLAAIPKTLMEDHSKFTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYC 160
C+ AI TL D SK + G+++ T +V
Sbjct: 150 GTRCSDTSTAISTTL--DVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPARLVIA 204
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A
{Homo sapiens} PDB: 2an6_A 1k2f_A
Length = 193
Score = 29.8 bits (66), Expect = 1.4
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 15/99 (15%)
Query: 74 LIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPC----NKC-----LAAIPKTLMEDHSK 124
L C + GC+ H + C++ C C L A+ LM H
Sbjct: 6 LFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKS 65
Query: 125 FTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENK 163
ITT Q F ++ M C
Sbjct: 66 ------ITTLQGEDIVFLATDINLPGAVDWVMMQSCFGF 98
>4b4p_A FEDF, F18 fimbrial adhesin AC; cell adhesion, fimbriae, bacterial
adhesins, protein-carbohy interactions, ABH blood group
binding, STEC; 1.80A {Escherichia coli k-12} PDB:
4b4q_A* 4b4r_A*
Length = 151
Score = 29.4 bits (65), Expect = 1.5
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 275 MCSLVSKQQQ--QISTLKSALNKVTLNYSGTLIWK---ITDYSLKCQESIELLSPSFYTS 329
M +L + Q Q ++ + S+ +T L+WK T Y+L+C+ SI S S S
Sbjct: 24 MPALYTWQHQIYNVNFIPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINES 83
Query: 330 QFGYKLQVSL 339
Q+G + QV
Sbjct: 84 QWGQQSQVGF 93
>3roh_A Leukotoxin LUKE; structural genomics, center for structural
genomics of infec diseases, csgid, leukocidin-like,
leukocidin; HET: PGE; 3.20A {Staphylococcus aureus
subsp}
Length = 329
Score = 29.8 bits (66), Expect = 1.8
Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 19/153 (12%)
Query: 257 GETMEKHIEENVNQHMLLMCSLVSKQQQQISTLKSALNKVTLNYSGTLIWKITD------ 310
G + H EN+ ++ + + + + + + + T I I D
Sbjct: 2 GSSHHHHHHENLYFQGMMFKKKMLAATLSVGLIAPLASPIQESRANTNIENIGDGAEVIK 61
Query: 311 -----YSLKCQESIELLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSVYIKLLPGEYDA 365
S K + + F + K + + + G + +K E
Sbjct: 62 RTEDVSSKKWGVTQNV-QFDFVKDKKYNKDALIVKMQGFINSRTS--FSDVKGSGYELTK 118
Query: 366 LLKWPFSHSVSFTLFDQSEK-----PVNVVESF 393
+ WPF +++ T D + P N +E+
Sbjct: 119 RMIWPFQYNIGLTTKDPNVSLINYLPKNKIETT 151
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.1
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 27/59 (45%)
Query: 225 REELDVHIKEHCNSLLVSCVFKDAGCR----------------FKGMRGETMEKHIEEN 267
REE ++E DA + + + E +EK+ N
Sbjct: 91 REEQRKRLQE-----------LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 29.0 bits (64), Expect = 3.9
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 129 ERITTCQYCLESFS--GMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRANDCYKRLV 186
+ + CQ ES G ++ YC N+C ++ L LV
Sbjct: 403 QSMKHCQVQRESLVRAGKKIAYQGRVKDEPAYYC-NECDVEVFNILFVTSENGSRNTYLV 461
Query: 187 ACRYCSK 193
C C++
Sbjct: 462 HCEGCAR 468
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 27.4 bits (60), Expect = 4.0
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 129 ERITTCQYCLESFSG-------MEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRANDC 181
C+ C ++ M H ++E K K ++R + + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 182 YKRLVACRYCSKSY-VADTLVTHQTK 206
++++ C YC S+ L H K
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIK 102
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.8 bits (59), Expect = 4.3
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 107 CNKCLAAIPKTLMEDHSKFTCPERITTCQYCLESFSGMEMEDHT 150
CN C ++ K +E H +C C + F G + + H
Sbjct: 13 CNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHV 56
>2ygt_A Delta toxin; beta-pore-forming toxin, haemolysin, enterotoxin;
2.40A {Clostridium perfringens}
Length = 298
Score = 28.2 bits (62), Expect = 4.7
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 348 EGTHVSVYIKLLPGEYDALLKWPFSHSVSFTLFDQSEK-------PVNVVESFVPDPT 398
+G S +Y +++WP + V P N + + + T
Sbjct: 68 KGFIPSGRKIFALSKYRGVMRWPIKYMVDLKNNSLDSSVKIVDSVPKNTISTKEVNNT 125
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 4.7
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 87 YDELKSLKGHLQTCKYDAIPCNKC------LAAIPKTLMEDHS 123
++ LK H++ CK + C+ C LA + +M +H+
Sbjct: 45 RKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 27.4 bits (60), Expect = 5.8
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 4/79 (5%)
Query: 188 CRYCSKSYVADTLVTHQTKCTRAPIPCPNQCEMVALPREELDVHIKEHCNSLLVSCVFKD 247
C +C S ++ ++ D + SL C
Sbjct: 54 CSFCLASILSSG--PQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSD- 110
Query: 248 AGCRFKGMRGETMEKHIEE 266
GC +KG E H
Sbjct: 111 -GCTWKGTLKEYESCHEGR 128
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 27.8 bits (62), Expect = 7.1
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 225 REELDVHIKEHCNSLLVSCVFKDAGCRFKGMRG----ETMEKHIEENVNQHMLLMC 276
R EL+ +H + A + +G E + H+ + ++LMC
Sbjct: 193 RPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMC 248
>1t5r_A LUKS-PV; BI-component leucotoxin, pore-forming toxin,
staphylococcus aureus, S component leucocidin,, unknown
function; 2.00A {Staphylococcus phage pvl} SCOP: f.6.1.1
Length = 284
Score = 27.9 bits (61), Expect = 7.3
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 294 NKVTLNYSGTLIWKITDYSLKCQESIEL-LSPSFYTSQFGYKLQVSLFLNGNGAGEGTHV 352
N + G + K T+ + + + + F + K + L + G + T+
Sbjct: 2 NNIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYY 61
Query: 353 SVYIKLLPGEYDALLKWPFSHSVSFTLFDQSEK-----PVNVVESF 393
+ ++ ++WPF +++ D + P N ++S
Sbjct: 62 NYKN----TDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSV 103
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 27.7 bits (61), Expect = 8.1
Identities = 18/118 (15%), Positives = 27/118 (22%), Gaps = 9/118 (7%)
Query: 74 LIHCIHYKEGCKWYDELKSLKGHLQTCKYDAIPCNKCLAAIPKTLMEDHSKFT--CPERI 131
++ E +WY L + A + + T +
Sbjct: 316 MLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHV 375
Query: 132 TTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRAN----DCYKRL 185
C C FS H C + C C K R C+ L
Sbjct: 376 MMCMNCGCDFSLTLRRHHCHAC--GKIVC-RNCSRNKYPLKYLKDRMAKVCDGCFGEL 430
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 27.9 bits (63), Expect = 9.0
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 210 APIP---CPNQCEMVALPREELDV 230
PIP C C +V +P EEL V
Sbjct: 432 TPIPMVHCEA-CGVVPVPEEELPV 454
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.411
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,513,014
Number of extensions: 368736
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 83
Length of query: 450
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 353
Effective length of database: 3,993,456
Effective search space: 1409689968
Effective search space used: 1409689968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)