RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy225
(450 letters)
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
(TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 138 bits (347), Expect = 1e-39
Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 6/154 (3%)
Query: 300 YSGTLIWKITDYSLKCQESIE-----LLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSV 354
Y+G LIWKI DY + QE++ L S FYT FGYK+ ++LNG+G G+GTH+S+
Sbjct: 1 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSL 60
Query: 355 YIKLLPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGF 414
+ ++ GEYDALL WPF V+ L DQ ++ ++F PDP +F++P+ + +
Sbjct: 61 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNI-AS 119
Query: 415 GFPRFVSLDTIRKRQFLKDDAIFIRVKVDPSKIV 448
G P FV+ + ++KDD IFI+V VD S +
Sbjct: 120 GCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLP 153
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
(TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 152
Score = 134 bits (338), Expect = 2e-38
Identities = 60/154 (38%), Positives = 98/154 (63%), Gaps = 8/154 (5%)
Query: 300 YSGTLIWKITDYSLKCQESIE-----LLSPSFYTSQFGYKLQVSLFLNGNGAGEGTHVSV 354
Y G IWKI+D+ K QE++ + SP+FYTS++GYK+ + ++LNG+G G GTH+S+
Sbjct: 1 YDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSL 60
Query: 355 YIKLLPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGF 414
+ ++ G DALL+WPF+ V+ L DQ+ + +V+++F PD T +FQRP +
Sbjct: 61 FFVVMKGPNDALLRWPFNQKVTLMLLDQNNRE-HVIDAFRPDVTSSSFQRPVNDMNI-AS 118
Query: 415 GFPRFVSLDTIRKRQ-FLKDDAIFIRVKVDPSKI 447
G P F + + + +++DDAIFI+ VD + +
Sbjct: 119 GCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 152
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 124 bits (313), Expect = 7e-35
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 8/150 (5%)
Query: 302 GTLIWKITDYSLKCQESIE-----LLSPSFYTSQFGYKLQVSLFLNGNGAGE-GTHVSVY 355
G IWKI ++ + + E + SP FYT + GYKL + L L A ++S++
Sbjct: 5 GIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLF 64
Query: 356 IKLLPGEYDALLKWPFSHSVSFTLFDQSEKPV--NVVESFVPDPTWENFQRPSKQPDSLG 413
+ + GEYD+ L WPF ++ T+ DQSE PV N E P FQRP+ + G
Sbjct: 65 VHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKG 124
Query: 414 FGFPRFVSLDTIRKRQFLKDDAIFIRVKVD 443
FG+ F+ L+ +R+R F+KDD + +R +V
Sbjct: 125 FGYVTFMHLEALRQRTFIKDDTLLVRCEVS 154
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 75.6 bits (185), Expect = 5e-17
Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 19/147 (12%)
Query: 301 SGTLIWKITDYSLKCQESIE-LLSPSFYT-SQFGYKLQVSLFLNGNGAGEGTHVSVYIKL 358
+ +W I ++S +E E + S +F + + K + + G ++S+Y+ L
Sbjct: 4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 63
Query: 359 LPGEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGFPR 418
+ F++ + + +ES + +GF +
Sbjct: 64 VSCPK-----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD----------WGFKK 108
Query: 419 FVSLDTI--RKRQFLKDDAIFIRVKVD 443
F+ D + L DD + + +V
Sbjct: 109 FIRRDFLLDEANGLLPDDKLTLFCEVS 135
>d3lkfa_ f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus aureus
[TaxId: 1280]}
Length = 299
Score = 29.8 bits (67), Expect = 0.54
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 348 EGTHVSVYIKLLPGEY-DALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPS 406
G S ++K P +Y + L W ++VS + QS VNVV+ P E FQ +
Sbjct: 56 TGNINSGFVKPNPNDYDFSKLYWGAKYNVSISS--QSNDSVNVVDYA-PKNQNEEFQVQN 112
Query: 407 KQPDSLGFGF 416
+ G
Sbjct: 113 TLGYTFGGDI 122
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 29.6 bits (66), Expect = 0.54
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 77 CIHYKEGCKWYDELKSLKGHLQTCKYDAIPC----NKCLAAIPKTLMEDHSKFTCPERIT 132
C + GC+ H + C++ C C + H + IT
Sbjct: 6 CKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM-HQHKSIT 64
Query: 133 TCQYCLESFSGMEMEDHTGHCSYEMVYCENK 163
T Q F ++ M C
Sbjct: 65 TLQGEDIVFLATDINLPGAVDWVMMQSCFGF 95
Score = 29.6 bits (66), Expect = 0.55
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 212 IPCPNQ---CEMVALPREELDVHIKEHCNSLLVSCVFKDAGCRFKGMRGETMEKHIEEN 267
PC CE + LP E H + C SC A C+++G M H+
Sbjct: 4 FPCKYASSGCE-ITLPHTEKAEHEEL-CEFRPYSCPCPGASCKWQGSLDAVMP-HLMHQ 59
Score = 25.7 bits (56), Expect = 9.8
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 62 DVSDSEKDTMGSLIHCIHYKEGCKWYDELKSLKGHLQTC 100
+ ++ E+ C CKW L ++ HL
Sbjct: 21 EKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQ 59
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.4 bits (61), Expect = 0.83
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 12/54 (22%)
Query: 218 CEMVALPREELDVHIKEHCNSL------------LVSCVFKDAGCRFKGMRGET 259
E V+LPR L H H L+ VF R G RG +
Sbjct: 12 AEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNS 65
>d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId:
1280]}
Length = 293
Score = 27.9 bits (62), Expect = 2.4
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 348 EGTHVSVYIKLLPGEYD-ALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPS 406
+GT Y + + L WP + V L + + + + P + + + S
Sbjct: 58 KGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQL--PDNEVAQISDYY-PRNSIDTKEYMS 114
Query: 407 KQPDSLGFGF 416
Sbjct: 115 TLTYGFNGNV 124
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 1/115 (0%)
Query: 79 HYKEGCKWYDELKSLKGHLQTCKYDAIPCNKCLAAIPKTLMEDHSKFTCPERITT-CQYC 137
K + +LK + D + + + + S P+ + C
Sbjct: 41 AGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVF 100
Query: 138 LESFSGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRANDCYKRLVACRYCS 192
S + + Y + + + L + L+A
Sbjct: 101 DLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLL 155
>d1t5ra_ f.6.1.1 (A:) Leucocidin S component LukS-PV {Staphylococcus
aureus bacteriophage PVL [TaxId: 71366]}
Length = 282
Score = 27.5 bits (61), Expect = 3.2
Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 361 GEYDALLKWPFSHSVSFTLFDQSEKPVNVVESFVPDPTWENFQRPSKQPDSLGFGF 416
++ ++WPF +++ ++ V+++ P ++ ++G F
Sbjct: 64 TDHIKAMRWPFQYNIGLKT---NDPNVDLINYL-PKNKIDSVNVSQTLGYNIGGNF 115
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 25.4 bits (55), Expect = 3.3
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 129 ERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAK-HRA-NDCYKRL 185
+ C C + FS H C ++C K R + C+ L
Sbjct: 6 NEVQNCMACGKGFSVTVRRHHCRQCGN--IFCAECSAKNALTPSSKKPVRVCDACFNDL 62
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 24.7 bits (54), Expect = 3.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 84 CKWYDELKSLKGHLQTCKYDAIPCNKCL 111
C+ + +LKGH + CK+ C KC
Sbjct: 13 CRNHGLKITLKGHKRYCKFRYCTCEKCR 40
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
[TaxId: 2336]}
Length = 404
Score = 27.0 bits (59), Expect = 4.8
Identities = 3/20 (15%), Positives = 12/20 (60%)
Query: 295 KVTLNYSGTLIWKITDYSLK 314
++T++ + L+ ++ L+
Sbjct: 52 RLTMSITPPLMEMLSSRDLQ 71
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 412
Score = 26.6 bits (58), Expect = 7.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 295 KVTLNYSGTLIWKITDYSLK 314
TL + L ++ D +K
Sbjct: 54 PFTLGITPILAEQLADARIK 73
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 26.4 bits (56), Expect = 7.5
Identities = 21/223 (9%), Positives = 50/223 (22%), Gaps = 10/223 (4%)
Query: 2 VRSFTSWTKTLSFPARLNTHHKQQISSKENTLSSSSS---SHSSDLPMICSQTKSRTPLS 58
VR + + H +++ + + S S +I +
Sbjct: 42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 101
Query: 59 LTPDVSDSEKDTMGSLIHCIHY-KEGCKWYDELKSLKGHLQTCKYDAIPCNKCLAAIPKT 117
SE + I I + EG + + +D+ ++ +
Sbjct: 102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR 161
Query: 118 LMEDHSKFTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHR 177
+ H K + P R T + + G R +
Sbjct: 162 INACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 215
Query: 178 ANDCYKRLVACRYCSKSYVADTLVTHQTKCTRAPIPCPNQCEM 220
+ + V + + + +
Sbjct: 216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 26.0 bits (57), Expect = 9.0
Identities = 10/58 (17%), Positives = 24/58 (41%)
Query: 290 KSALNKVTLNYSGTLIWKITDYSLKCQESIELLSPSFYTSQFGYKLQVSLFLNGNGAG 347
K + G++ + + K +++ + TS Y +++ +G+GAG
Sbjct: 182 KRGYKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLDDYPIKIVPAEDGSGAG 239
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 25.0 bits (53), Expect = 10.0
Identities = 15/76 (19%), Positives = 19/76 (25%)
Query: 124 KFTCPERITTCQYCLESFSGMEMEDHTGHCSYEMVYCENKCGHKIQRRLMAKHRANDCYK 183
K E C L SG + +V KC H + N
Sbjct: 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD 80
Query: 184 RLVACRYCSKSYVADT 199
+ C C Y T
Sbjct: 81 GSLQCPSCKTIYGEKT 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.411
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,644,357
Number of extensions: 78359
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 41
Length of query: 450
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,199,356
Effective search space: 434166872
Effective search space used: 434166872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)