BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2256
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
          Length = 670

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 48  CALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPVGSRMNPPHKCEVW 103
           C++  PE     ++TD HSPS FRV+G LSN KEF+  F+CP GS MNPPHKCEVW
Sbjct: 615 CSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 670


>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
           Phosphoramidon
 pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
           Imidazo[4,5- C]pyridine Inhibitor
 pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
           INHIBITOR
 pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
           With A Heteroarylalanine Diacid
          Length = 696

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 30/56 (53%)

Query: 48  CALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPVGSRMNPPHKCEVW 103
           C   RPE     I TD HSP  FR++G L N  EF+  F C   S MNP  KC VW
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696



 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 1   CTLVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPER 55
           C   RPE     I TD HSP  FR++G L N  EF+  F C +  +M     PE+
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYM----NPEK 691


>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
           Metalloprotease Zmp1 In Complex With Inhibitor
 pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
           Metalloprotease Zmp1 In Complex With Inhibitor
          Length = 699

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 16  DTHSPSEFRVLGPLSNLKEFARDFQCPEE 44
           D HSP EFR  G + N+  F + F   E+
Sbjct: 656 DPHSPPEFRCNGVVRNVDAFYQAFDVTED 684



 Score = 28.1 bits (61), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 63  DTHSPSEFRVLGPLSNLKEFARDFQCPVGSR--MNPPHKCEVW 103
           D HSP EFR  G + N+  F + F         ++P  +  +W
Sbjct: 656 DPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIW 698


>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
          Length = 215

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 22/54 (40%)

Query: 13 ILTDTHSPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKFLILTDTHS 66
          +L D   P   R  G L +  E   D  C E  H C    P+ +  L + D H+
Sbjct: 27 LLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHN 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,128,001
Number of Sequences: 62578
Number of extensions: 110481
Number of successful extensions: 186
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 7
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)