RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2256
(103 letters)
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 101 bits (254), Expect = 6e-27
Identities = 27/56 (48%), Positives = 30/56 (53%)
Query: 48 CALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPVGSRMNPPHKCEVW 103
C RPE I TD HSP FR++G L N EF+ F C S MNP KC VW
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 100 bits (250), Expect = 2e-26
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 48 CALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPVGSRMNPPHKCEVW 103
C++ PE ++TD HSPS FRV+G LSN KEF+ F+CP GS MNPPHKCEVW
Sbjct: 615 CSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 670
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 89.8 bits (223), Expect = 1e-22
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 48 CALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPVGSRM--NPPHKCEVW 103
R + D HSP EFR G + N+ F + F + +P + +W
Sbjct: 641 RTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIW 698
Score = 72.8 bits (179), Expect = 1e-16
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 1 CTLVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPE 43
T R + D HSP EFR G + N+ F + F E
Sbjct: 641 RTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTE 683
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.012
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 39/106 (36%)
Query: 4 VRPERLKFLILTDTHSPSEFRVLGP------LSNLKE-FARDFQCP-EEF---------- 45
RP L L+ H E +L P S L+E F + P E F
Sbjct: 6 TRP-----LTLS--HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 46 HMCALVRPERLKFL--I--LTDTHSPSEF-RVLGPLSNLKEFARDF 86
+ KFL + L + +F +VL L EF +
Sbjct: 59 ELVG-------KFLGYVSSLVEPSKVGQFDQVL--NLCLTEFENCY 95
Score = 28.9 bits (64), Expect = 0.33
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 28/116 (24%)
Query: 3 LVRPERLKFLILTDTHSPSEFR-------------VLGP---LSNLKEFARDFQCPEEFH 46
L + + ++ T++H P+ + V GP L L R + P
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 47 MCALVRPER-----LKFL-ILTDTHSP----SEFRVLGPL--SNLKEFARDFQCPV 90
+ ER +FL + + HS + + L +N+ A+D Q PV
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 28.1 bits (62), Expect = 0.56
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 9 LKFLI-LTDTHSPSEF-RVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKFLILTDTHS 66
L ++ L + +F +VL L EF + + H AL K L DT
Sbjct: 65 LGYVSSLVEPSKVGQFDQVL--NLCLTEFENCYLEGNDIH--ALA----AKLLQENDTTL 116
Query: 67 PSEFRVL 73
++
Sbjct: 117 VKTKELI 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.77
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 7 ERLKFLILTDTHSPSEFRVLGPLS--NLKEFARDFQCPEEFHMCALVRPERLKFLILTDT 64
++L + I + S S+ L +++ R + + C L L+L +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-L--------LVLLNV 253
Query: 65 HSPSEFRVLGPLSNLKEFARDFQCPV 90
+ F + C +
Sbjct: 254 QNAKA---------WNAF--NLSCKI 268
Score = 25.2 bits (54), Expect = 4.7
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 31 NLKEFARDFQCP--EEFHMCALVRPERLKFLILTDTHSPSEFRVLGPL-SNLKEFARDFQ 87
F +F C ++ +++ E + +I++ R+ L S +E + F
Sbjct: 25 FEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF- 82
Query: 88 CPVGSRMNPPHKCEVW 103
V + +K +
Sbjct: 83 --VEEVLRINYK---F 93
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate,
transport, lipoprotein, ER-golgi transport apparatus,
protein transport; HET: PLM; 2.4A {Homo sapiens} PDB:
2zmv_A 2jsn_A
Length = 219
Score = 26.2 bits (57), Expect = 2.2
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 43 EEFHMCALVRPERLKFLILTDTHSPS 68
+ F + +KF++L D
Sbjct: 140 DTFKLHCYQTLTGIKFVVLADPRQAG 165
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 25.5 bits (56), Expect = 3.4
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 9 LKFLILTDTH-SPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKFLI----LTD 63
+ ++DTH ++ G + A + AL ER ++ + +
Sbjct: 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVS-----QLNAL--RERPDAVVVSGDIVN 53
Query: 64 THSPSEFRVLGPLSNLKEFARDFQCPV 90
P E++ ++ P+
Sbjct: 54 CGRPEEYQ------VARQILGSLNYPL 74
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 219
Score = 25.4 bits (54), Expect = 3.9
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 43 EEFHMCALVRPERLKFLILTDTHSPSEFRVLGPLSN 78
++F M LKF+ ++ + P +
Sbjct: 125 DQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDK 160
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 24.7 bits (54), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 48 CALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDF 86
L RP+++K L+ H + + LK +
Sbjct: 121 LCLFRPDKVKALVNLSVHFSKRNPKMNVVEGLKAIYGED 159
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 24.8 bits (54), Expect = 6.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 49 ALVRPERLKFLILTDTHSPSEFRVLG 74
AL+ P +++ L+L + +++ LG
Sbjct: 132 ALLYPRQVERLVLVNPIGLEDWKALG 157
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 24.4 bits (53), Expect = 9.4
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 9/61 (14%)
Query: 5 RPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKFLILTDT 64
++F +L S + + R F V PE L
Sbjct: 27 PDTEIRFHVLDAGISEANRA------AVAANLRGGGGNIRFI---DVNPEDFAGFPLNIR 77
Query: 65 H 65
H
Sbjct: 78 H 78
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 24.4 bits (52), Expect = 9.9
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 7 ERLKFLILTDTH--------SPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKF 58
L ++ TD H + F + K+ A + + F A V ++
Sbjct: 38 RNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAF--LADVESKKTDV 95
Query: 59 LI----LTDTHSPSEFRVL 73
LI LT+ + L
Sbjct: 96 LIISGDLTNNGEKTSHEEL 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.460
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,579,863
Number of extensions: 79936
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 23
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)