RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2256
         (103 letters)



>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 696

 Score = 90.5 bits (223), Expect = 3e-23
 Identities = 27/57 (47%), Positives = 30/57 (52%)

Query: 47  MCALVRPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPVGSRMNPPHKCEVW 103
            C   RPE     I TD HSP  FR++G L N  EF+  F C   S MNP  KC VW
Sbjct: 640 WCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696


>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
          zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
          Length = 320

 Score = 24.3 bits (51), Expect = 3.6
 Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 7/87 (8%)

Query: 9  LKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPEEFHMC-ALVRPERLKFLI----LTD 63
            F ++ D            L   + + R     +         R ER++ ++    + D
Sbjct: 4  FTFGLIADVQYADIEDGENYLRTRRRYYRG--SADLLRDAVLQWRRERVQCVVQLGDIID 61

Query: 64 THSPSEFRVLGPLSNLKEFARDFQCPV 90
           H+         L  +          V
Sbjct: 62 GHNRRRDASDRALDTVMAELDACSVDV 88


>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 140

 Score = 24.1 bits (52), Expect = 3.7
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 43 EEFHMCALVRPERLKFLILTDTHSPSEFRVL 73
           E+ + A V    ++F++L D       +  
Sbjct: 68 NEWFVSAFVTAGHMRFIMLHDVRQEDGIKNF 98


>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 23.9 bits (51), Expect = 4.5
 Identities = 4/28 (14%), Positives = 11/28 (39%)

Query: 28 PLSNLKEFARDFQCPEEFHMCALVRPER 55
          P    ++     +  + F + A +R  +
Sbjct: 44 PDDKFQDLVDAVRTEKGFLLLASLRQMK 71


>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 333

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 10 KFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKFLILT----DTH 65
          KF  L D H   E          +EFA  F+     +   +   E + F+++      + 
Sbjct: 2  KFAHLADIHLGYEQ--FHKPQREEEFAEAFK-----NALEIAVQENVDFILIAGDLFHSS 54

Query: 66 SPSEFRVLGPLSNLKEFARDFQCPV 90
           PS    L     L +  ++   PV
Sbjct: 55 RPS-PGTLKKAIALLQIPKEHSIPV 78


>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
          meningitidis [TaxId: 487]}
          Length = 282

 Score = 23.3 bits (49), Expect = 8.8
 Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 9/61 (14%)

Query: 5  RPERLKFLILTDTHSPSEFRVLGPLSNLKEFARDFQCPEEFHMCALVRPERLKFLILTDT 64
              ++F +L    S +          +    R       F     V PE      L   
Sbjct: 27 PDTEIRFHVLDAGISEANRA------AVAANLRGGGGNIRFI---DVNPEDFAGFPLNIR 77

Query: 65 H 65
          H
Sbjct: 78 H 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0386    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 397,828
Number of extensions: 16515
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.8 bits)