BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2257
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
          Length = 670

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 42/61 (68%)

Query: 15  FTIYRCSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSRMNPPHKCEV 74
           F    CS+  PES    ++TD HSP  FRV+G LSN KEF+  F+CP GS MNPPHKCEV
Sbjct: 610 FAQVWCSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEV 669

Query: 75  W 75
           W
Sbjct: 670 W 670


>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
           Phosphoramidon
 pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
           Imidazo[4,5- C]pyridine Inhibitor
 pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
           INHIBITOR
 pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
           With A Heteroarylalanine Diacid
          Length = 696

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 32/56 (57%)

Query: 20  CSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSRMNPPHKCEVW 75
           C  YRPE     I TD HSPG FR++G L N  EF+  F C   S MNP  KC VW
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696


>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
           Metalloprotease Zmp1 In Complex With Inhibitor
 pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
           Metalloprotease Zmp1 In Complex With Inhibitor
          Length = 699

 Score = 30.8 bits (68), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 17  IYRCSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSR--MNPPHKCEV 74
           I+R      E+++ R+  D HSP EFR  G + N+  F   F         ++P  +  +
Sbjct: 639 IWRTKSRAAEAIR-RLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRI 697

Query: 75  W 75
           W
Sbjct: 698 W 698


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,290,925
Number of Sequences: 62578
Number of extensions: 72967
Number of successful extensions: 102
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 3
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)