RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2257
         (75 letters)



>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
           hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
           d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
           2yb9_A*
          Length = 696

 Score =  106 bits (266), Expect = 5e-29
 Identities = 29/56 (51%), Positives = 32/56 (57%)

Query: 20  CSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSRMNPPHKCEVW 75
           C  YRPE     I TD HSPG FR++G L N  EF+  F C   S MNP  KC VW
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696


>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
           glycoprotein, hirschsprung diseas hydrolase, membrane,
           metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
          Length = 670

 Score =  104 bits (260), Expect = 4e-28
 Identities = 35/56 (62%), Positives = 41/56 (73%)

Query: 20  CSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSRMNPPHKCEVW 75
           CS+  PES    ++TD HSP  FRV+G LSN KEF+  F+CP GS MNPPHKCEVW
Sbjct: 615 CSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 670


>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
           pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
           2.60A {Mycobacterium tuberculosis}
          Length = 699

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 20  CSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSRM--NPPHKCEVW 75
            +  R      R+  D HSP EFR  G + N+  F   F       +  +P  +  +W
Sbjct: 641 RTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIW 698


>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
          DSS-3, thioredoxin-like, oxidoreductase, structural
          genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
          pomeroyi}
          Length = 175

 Score = 25.8 bits (57), Expect = 1.3
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)

Query: 26 ESLKIRILTDTHSPGEFRVLGPLS---NLKEFASDFQCP 61
           + +  +  D ++P    VLG       + EF  D+ CP
Sbjct: 2  NANRDSLFNDPNAP----VLGNPEGDVTVVEF-FDYNCP 35


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.5 bits (52), Expect = 3.3
 Identities = 5/16 (31%), Positives = 7/16 (43%), Gaps = 3/16 (18%)

Query: 19 RCSLYRPES---LKIR 31
             LY  +S   L I+
Sbjct: 28 SLKLYADDSAPALAIK 43



 Score = 24.1 bits (51), Expect = 5.7
 Identities = 5/13 (38%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query: 49 SNLKEFASDFQCP 61
          ++LK +A D   P
Sbjct: 27 ASLKLYADD-SAP 38


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,108,173
Number of extensions: 50114
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 6
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)