RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2257
         (75 letters)



>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 696

 Score = 94.7 bits (234), Expect = 3e-25
 Identities = 29/56 (51%), Positives = 32/56 (57%)

Query: 20  CSLYRPESLKIRILTDTHSPGEFRVLGPLSNLKEFASDFQCPVGSRMNPPHKCEVW 75
           C  YRPE     I TD HSPG FR++G L N  EF+  F C   S MNP  KC VW
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696


>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
           synthase (DAHP synthase, AroG) {Escherichia coli,
           phenylalanine-regulated isozyme [TaxId: 562]}
          Length = 343

 Score = 24.4 bits (53), Expect = 1.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 52  KEFASDFQCPVGSRMNPPHKCEV 74
           +E AS   CPVG +       +V
Sbjct: 166 RELASGLSCPVGFKNGTDGTIKV 188


>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp.,
          UC5319 [TaxId: 1931]}
          Length = 311

 Score = 23.2 bits (49), Expect = 3.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 57 DFQCPVGSRMNPPH 70
          DF  P+  R +P H
Sbjct: 4  DFHIPLPGRQSPDH 17


>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
          protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 22.5 bits (48), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 9  YAVTSKFT-IYRCSLYRPESLKIRILTDTHSPGE 41
          +AV   +T I + S + PES+  R+LT     GE
Sbjct: 51 FAVAPDWTDIVKQSGFVPESMFDRLLTGPVVRGE 84


>d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 301

 Score = 22.5 bits (48), Expect = 6.6
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 16  TIYRCSLYRPESLKIRILTDTHSP 39
           ++YR  L       +R+ TD  + 
Sbjct: 140 SVYRVGLSTQRPRFLRMSTDIKTG 163


>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
           5664]}
          Length = 475

 Score = 22.8 bits (48), Expect = 7.0
 Identities = 5/44 (11%), Positives = 13/44 (29%)

Query: 2   TSSPTGAYAVTSKFTIYRCSLYRPESLKIRILTDTHSPGEFRVL 45
           +     A+A T +            ++    +   +     RV+
Sbjct: 120 SEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRYDQLVTRVV 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,389
Number of extensions: 10090
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 6
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)