BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy226
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/410 (66%), Positives = 320/410 (78%), Gaps = 4/410 (0%)
Query: 1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
MVLSQRQR+ELN+A+ADYL SNGY A FKK+A D+ E++KKY+GLLEKKWTSVIR
Sbjct: 1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
LQKKV+ + G P KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120
Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
++C++TM GHDHNV+ V+ +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA--AX 296
+ + DGTL+ASCSND T RVW +ATKE KAELR H H VEC++WAP + SISEA +
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 297 XXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
+L +GSRDKTIK+WDV +G L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
TLRVWD NKR MKTL AH HFVTSLDFH+ PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 24/303 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L+GH S V V F P +AS S+D T++LW+ G+ + L GH SV+ +AF G+
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
+ S S D ++KLW+ + Q L+T+ GH +V GVAF P+ + SAS DKT+K+W
Sbjct: 235 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RN 292
Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA 281
G ++TLTGH V + SPDG +AS S+D T ++W+ + + L GH +V VA
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVA 351
Query: 282 WAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
++P +A+ S DKT+KLW+ +G LL TL GH + VRGV
Sbjct: 352 FSP------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 392
Query: 342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK 401
F P G+ + S DDKT+++W+ N + ++TL HS V + F + + S DKTVK
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 402 VWE 404
+W
Sbjct: 452 LWN 454
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 169/303 (55%), Gaps = 24/303 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L+GH S V V F P +AS S+D T++LW+ G+ + L GH SV +AF G+
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 316
Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
+ S S D ++KLW+ + Q L+T+ GH +V GVAF P+ + SAS DKT+K+W
Sbjct: 317 TIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 374
Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA 281
G ++TLTGH VR + SPDG +AS S+D T ++W+ + L GH +V VA
Sbjct: 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 433
Query: 282 WAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
++P +A+ S DKT+KLW+ +G LL TL GH + VRGV
Sbjct: 434 FSP------------------DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 474
Query: 342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK 401
F P G+ + S DDKT+++W+ N + ++TL HS V + F + + S DKTVK
Sbjct: 475 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 402 VWE 404
+W
Sbjct: 534 LWN 536
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 168/307 (54%), Gaps = 24/307 (7%)
Query: 98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD 157
E+ L H S V V F P +AS S+D T++LW+ G+ + L GH SV +AF
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 66
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
G+ + S S D ++KLW+ + Q L+T+ GH +V GVAF P+ + SAS DKT+K+W
Sbjct: 67 PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
G ++TLTGH V + SPDG +AS S+D T ++W+ + L GH +V
Sbjct: 126 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 183
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
VA++P +A+ S DKT+KLW+ +G LL TL GH + V
Sbjct: 184 WGVAFSP------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 224
Query: 338 RGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD 397
RGV F P G+ + S DDKT+++W+ N + ++TL HS V + F + + S D
Sbjct: 225 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 398 KTVKVWE 404
KTVK+W
Sbjct: 284 KTVKLWN 290
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 24/303 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L+GH S V V F P +AS S+D T++LW+ G++ + L GH SV +AF G+
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
+ S S D ++KLW+ + Q L+T+ GH +V GVAF P+ + SAS DKT+K+W
Sbjct: 358 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 415
Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA 281
G ++TLTGH V + SPD +AS S+D T ++W+ + L GH +V VA
Sbjct: 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 474
Query: 282 WAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
++P +A+ S DKT+KLW+ +G LL TL GH + VRGV
Sbjct: 475 FSP------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 515
Query: 342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK 401
F P G+ + S DDKT+++W+ N + ++TL HS V + F + + S DKTVK
Sbjct: 516 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574
Query: 402 VWE 404
+W
Sbjct: 575 LWN 577
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 172/331 (51%), Gaps = 26/331 (7%)
Query: 80 GAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE 139
G+ T++K +P + P KF L+GH V V F P +AS S D I++W G+
Sbjct: 4 GSATQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 61
Query: 140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL 199
+E+ + GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
P S+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 260 SLATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKL 318
A+ + L D+ V V ++P Y+ + D T+KL
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKL 223
Query: 319 WDVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
WD G L T GH N + F GGK++VS +D + +W+ K ++ L+ H
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 376 SHFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
+ V S H + + ++ DKT+K+W+
Sbjct: 284 TDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 21 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 62
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 122
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 123 QSNLIVSGSFDESVRIWDVK 142
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 28/334 (8%)
Query: 77 YVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYE 136
Y +G T++K +P + P KF L+GH V V F P +AS S D I++W
Sbjct: 15 YFQG--TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70
Query: 137 TGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGV 196
G++E+ + GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V
Sbjct: 71 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 130
Query: 197 AFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
F P S+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D
Sbjct: 131 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 257 RVWSLATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
R+W A+ + L D+ V V ++P Y+ + D T
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNT 232
Query: 316 IKLWDVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTL 372
+KLWD G L T GH N + F GGK++VS +D + +W+ K ++ L
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Query: 373 EAHSHFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
+ H+ V S H + + ++ DKT+K+W+
Sbjct: 293 QGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 33 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 74
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 135 QSNLIVSGSFDESVRIWDVK 154
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83 TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
T++K +P + P KF L+GH V V F P +AS S D I++W G++E+
Sbjct: 8 TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+ + L D+ V V ++P Y+ + D T+KLWD
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 227
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLWK 315
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 22 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 63
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVK 143
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 171/330 (51%), Gaps = 26/330 (7%)
Query: 81 APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
+ T++K +P + P KF L+GH V V F P +AS S D I++W G++
Sbjct: 6 SATQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
E+ + GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
S+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
A+ + L D+ V V ++P Y+ + D T+KLW
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLW 225
Query: 320 DVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
D G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 377 HFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 22 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 63
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVK 143
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83 TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
T++K +P + P KF L+GH V V F P +AS S D I++W G++E+
Sbjct: 26 TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 83
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 143
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+ + L D+ V V ++P Y+ + D T+KLWD
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 245
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 306 VISTACHPTENIIASAALENDKTIKLWK 333
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 40 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 81
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 142 QSNLIVSGSFDESVRIWDVK 161
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83 TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
T++K +P + P KF L+GH V V F P +AS S D I++W G++E+
Sbjct: 24 TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 81
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 141
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+ + L D+ V V ++P Y+ + D T+KLWD
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 243
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 304 VISTACHPTENIIASAALENDKTIKLWK 331
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 38 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 79
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 140 QSNLIVSGSFDESVRIWDVK 159
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 169/331 (51%), Gaps = 25/331 (7%)
Query: 80 GAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE 139
G+P + PT P KF L+GH V V F P +AS S D I++W G+
Sbjct: 4 GSP-EFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL 199
+E+ + GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
P S+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 260 SLATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKL 318
A+ + L D+ V V ++P Y+ + D T+KL
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKL 224
Query: 319 WDVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
WD G L T GH N + F GGK++VS +D + +W+ K ++ L+ H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 376 SHFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
+ V S H + + ++ DKT+K+W+
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 22 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 63
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVK 143
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83 TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
T++K +P + P KF L+GH V V F P +AS S D I++W G++E+
Sbjct: 3 TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 60
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 120
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+ + L D+ V V ++P Y+ + D T+KLWD
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 222
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 283 VISTACHPTENIIASAALENDKTIKLWK 310
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 17 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 58
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 119 QSNLIVSGSFDESVRIWDVK 138
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83 TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
T++K +P + P KF L+GH V V F P +AS S D I++W G++E+
Sbjct: 2 TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 59
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+ + L D+ V V ++P Y+ + D T+KLWD
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 221
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLWK 309
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 16 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 57
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 118 QSNLIVSGSFDESVRIWDVK 137
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83 TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
T++K +P + P KF L+GH V V F P +AS S D I++W G++E+
Sbjct: 2 TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 59
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+ + L D+ V V ++P Y+ + D T+KLWD
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 221
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLWK 309
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 16 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 57
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 118 QSNLIVSGSFDESVRIWDVK 137
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 165/322 (51%), Gaps = 24/322 (7%)
Query: 89 PTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHL 148
PT P KF L+GH V V F P +AS S D I++W G++E+ + GH
Sbjct: 2 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA 208
+ D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S+ ++S
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 209 SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA 268
S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W A+ +
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 269 ELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLL 327
L D+ V V ++P Y+ + D T+KLWD G L
Sbjct: 182 TLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCL 223
Query: 328 FTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF 384
T GH N + F GGK++VS +D + +W+ K ++ L+ H+ V S
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 283
Query: 385 HRAHPYVVTGSV--DKTVKVWE 404
H + + ++ DKT+K+W+
Sbjct: 284 HPTENIIASAALENDKTIKLWK 305
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 12 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 53
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 114 QSNLIVSGSFDESVRIWDVK 133
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 170/330 (51%), Gaps = 26/330 (7%)
Query: 81 APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
+ T++K +P + P F L+GH V V F P +AS S D I++W G++
Sbjct: 3 SATQSKPTPVK--PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
E+ + GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
S+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
A+ + L D+ V V ++P Y+ + D T+KLW
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLW 222
Query: 320 DVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
D G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 377 HFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN 365
+LA+ S DK IK+W G T+ GH + V + LVS DDKTL++WD ++
Sbjct: 40 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+ +KTL+ HS++V +F+ +V+GS D++V++W+ +
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94 PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
P KF L+GH V V F P +AS S D I++W G++E+ + GH + D
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S+ ++S S D++
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
+++W+V TG C+KTL H + V + + DG+L+ S S D R+W A+ + L
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 189
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
D+ V V ++P Y+ + D T+KLWD G L T G
Sbjct: 190 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
H N + F GGK++VS +D + +W+ K ++ L+ H+ V S H
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Query: 390 YVVTGSV--DKTVKVWE 404
+ + ++ DKT+K+W+
Sbjct: 292 IIASAALENDKTIKLWK 308
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 15 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 56
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 116
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 117 QSNLIVSGSFDESVRIWDVK 136
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94 PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
P KF L+GH V V F P +A+ S D I++W G++E+ + GH + D
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S+ ++S S D++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
+++W+V TG C+KTL H + V + + DG+L+ S S D R+W A+ + L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
D+ V V ++P Y+ + D T+KLWD G L T G
Sbjct: 194 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
H N + F GGK++VS +D + +W+ K ++ L+ H+ V S H
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 390 YVVTGSV--DKTVKVWE 404
+ + ++ DKT+K+W+
Sbjct: 296 IIASAALENDKTIKLWK 312
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA S DK IK+W G
Sbjct: 19 KFTLAGHTKAVSSVKFSPN------------------GEWLAASSADKLIKIWGAYDGKF 60
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVK 140
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 169/330 (51%), Gaps = 26/330 (7%)
Query: 81 APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
+ T++K +P + P F L+GH V V F P +AS S D I++W G++
Sbjct: 3 SATQSKPTPVK--PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
E+ + GH + D+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
S+ ++S S D+++++W+V TG C+KTL H + V + + DG+L+ S S D R+W
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
A+ + L D+ V V ++P Y+ + D +KLW
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNDLKLW 222
Query: 320 DVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
D G L T GH N + F GGK++VS +D + +W+ K ++ L+ H+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 377 HFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
V S H + + ++ DKT+K+W+
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN 365
+LA+ S DK IK+W G T+ GH + V + LVS DDKTL++WD ++
Sbjct: 40 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+ +KTL+ HS++V +F+ +V+GS D++V++W+ +
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94 PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
P KF L+GH V V F P +AS S D I++W G++E+ + GH + D
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S+ ++S S D++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
+++W+V TG C+KTL H + V + + DG+L+ S S D R+W A+ + L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
D+ V V ++P Y+ + D T+KLWD G L T G
Sbjct: 194 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
H N + F GGK++VS +D + +W+ K ++ L+ H+ V S H
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 390 YVVTGSV--DKTVKVWE 404
+ + ++ DKT+K+++
Sbjct: 296 IIASAALENDKTIKLYK 312
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 19 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 60
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVK 140
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94 PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
P KF L+GH V V F P +AS S D I++W G++E+ + GH + D
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
+A+ LLVS S D +LK+WD+S+ +CLKT++GH + V F P S+ ++S S D++
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
+++W+V TG C+KTL H + V + + DG+L+ S S D R+W A+ + L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
D+ V V ++P Y+ + D T+KLWD G L T G
Sbjct: 194 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
H N + F GGK++VS +D + +W+ K ++ L+ H+ V S H
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 390 YVVTGSV--DKTVKVWE 404
+ + ++ DKT+K+++
Sbjct: 296 IIASAALENDKTIKLFK 312
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
K L GH V V ++P +LA+ S DK IK+W G
Sbjct: 19 KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 60
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
T+ GH + V + LVS DDKTL++WD ++ + +KTL+ HS++V +F+
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 387 AHPYVVTGSVDKTVKVWECR 406
+V+GS D++V++W+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVK 140
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 164/334 (49%), Gaps = 39/334 (11%)
Query: 79 EGAPTRAKRSPTEWIP---RAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDY 135
+ A R R T W ++P+ L GH VI + + + S S+D T+++W
Sbjct: 90 KSAYIRQHRIDTNWRRGELKSPK--VLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSA 146
Query: 136 ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTG 195
TG+ R L GH V + +++S S D +LK+W+ T +C+ T+ GH V
Sbjct: 147 VTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 204
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
+ + V+S SRD T+++W++ TG C+ L GH VR ++ DG + S + D
Sbjct: 205 MHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260
Query: 256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
+VW T+ L+GH + V + + G+ ++ +GS D +
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQF-DGI-------------------HVVSGSLDTS 300
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA- 374
I++WDV +G+ + TL GH + G+ LVS D T+++WD + ++TL+
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 375 --HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
H VT L F++ +V+T S D TVK+W+ +
Sbjct: 359 NKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLK 390
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 31/234 (13%)
Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
L GH S V + H + S S DAT+R+WD ETG+ L GH+ +V+ + +D G
Sbjct: 194 TLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--G 249
Query: 161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA 220
+ +VS + D +K+WD T CL T+QGH + V + F + V+S S D +I++W+V
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307
Query: 221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG---HDHTV 277
TG C+ TLTGH+ +++ + +L S + D T ++W + T + L+G H V
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI 331
C+ + ++ T S D T+KLWD+ +G + L+
Sbjct: 366 TCLQFNKN--------------------FVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 30/260 (11%)
Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
+++ S S D T+++W+ ETGE L+GH +V+ + + K +VS S D +L++WD+
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIE 227
Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
T QCL + GH V V + + V+S + D +K+W+ T C+ TL GH V +
Sbjct: 228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
+ DG + S S D + RVW + T L GH + +
Sbjct: 286 QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI------------ 331
Query: 299 XXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT-FHPGGKYLVSCGDDKT 357
L +G+ D T+K+WD+ +G L TL G + VT ++++ DD T
Sbjct: 332 --------LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 383
Query: 358 LRVWDTANK---RNMKTLEA 374
+++WD RN+ TLE+
Sbjct: 384 VKLWDLKTGEFIRNLVTLES 403
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 40/322 (12%)
Query: 102 LSGHRSPVIKVIFHPVF-SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIA 155
L GH V ++ P F ++ S S D TI +W + G +RAL GH V D+
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK 215
G+ +S S D +L+LWD++T + GH +V VAF ++ ++S SRDKTIK
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 216 MWEVATGYCVKTLT--GHREWVRQIKVSPDGT--LLASCSNDHTARVWSLATKETKAELR 271
+W G C T+ H EWV ++ SP+ + ++ SC D +VW+LA + K
Sbjct: 131 LWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 272 GHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI 331
GH + V +P A+G +D LWD+ G L+TL
Sbjct: 190 GHTGYLNTVTVSP------------------DGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL---------EAHSHFVTSL 382
G D + + F P +Y + ++++WD K + L +A TSL
Sbjct: 232 GGDI-INALCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289
Query: 383 DFHRAHPYVVTGSVDKTVKVWE 404
+ + G D V+VW+
Sbjct: 290 AWSADGQTLFAGYTDNLVRVWQ 311
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Query: 97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF 156
P++ AL GH V V+ S S D T+RLWD TG R GH V +AF
Sbjct: 55 PQR-ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN--VTGVAFLPNSD--FVLSASRDK 212
+ +VS S D ++KLW+ + C T+Q H+ V+ V F PNS ++S DK
Sbjct: 114 SSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG 272
+K+W +A GH ++ + VSPDG+L AS D A +W L + L G
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 273 HDHTVECVAWAP 284
D + + ++P
Sbjct: 233 GD-IINALCFSP 243
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 29/188 (15%)
Query: 227 TLTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKET-----KAELRGHDHTVECV 280
TL GH WV QI +P ++ S S D T +W L ET + LRGH H V V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
++S+ + +GS D T++LWD+ +G+ +GH V V
Sbjct: 70 V----ISSDG--------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 111
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTAN--KRNMKTLEAHSHFVTSLDF--HRAHPYVVTGSV 396
F + +VS DKT+++W+T K ++ E+HS +V+ + F + ++P +V+
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 397 DKTVKVWE 404
DK VKVW
Sbjct: 171 DKLVKVWN 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 40/322 (12%)
Query: 102 LSGHRSPVIKVIFHPVF-SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIA 155
L GH V ++ P F ++ S S D TI +W + G +RAL GH V D+
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK 215
G+ +S S D +L+LWD++T + GH +V VAF ++ ++S SRDKTIK
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 216 MWEVATGYCVKTLT--GHREWVRQIKVSPDGT--LLASCSNDHTARVWSLATKETKAELR 271
+W G C T+ H EWV ++ SP+ + ++ SC D +VW+LA + K
Sbjct: 154 LWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 272 GHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI 331
GH + V +P A+G +D LWD+ G L+TL
Sbjct: 213 GHTGYLNTVTVSP------------------DGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL---------EAHSHFVTSL 382
G D + + F P +Y + ++++WD K + L +A TSL
Sbjct: 255 GGDI-INALCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312
Query: 383 DFHRAHPYVVTGSVDKTVKVWE 404
+ + G D V+VW+
Sbjct: 313 AWSADGQTLFAGYTDNLVRVWQ 334
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Query: 97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF 156
P++ AL GH V V+ S S D T+RLWD TG R GH V +AF
Sbjct: 78 PQR-ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN--VTGVAFLPNSD--FVLSASRDK 212
+ +VS S D ++KLW+ + C T+Q H+ V+ V F PNS ++S DK
Sbjct: 137 SSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG 272
+K+W +A GH ++ + VSPDG+L AS D A +W L + L G
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 273 HDHTVECVAWAP 284
D + + ++P
Sbjct: 256 GD-IINALCFSP 266
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 29/188 (15%)
Query: 227 TLTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKET-----KAELRGHDHTVECV 280
TL GH WV QI +P ++ S S D T +W L ET + LRGH H V V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
++S+ + +GS D T++LWD+ +G+ +GH V V
Sbjct: 93 V----ISSDG--------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTAN--KRNMKTLEAHSHFVTSLDF--HRAHPYVVTGSV 396
F + +VS DKT+++W+T K ++ E+HS +V+ + F + ++P +V+
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 397 DKTVKVWE 404
DK VKVW
Sbjct: 194 DKLVKVWN 201
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 146/296 (49%), Gaps = 42/296 (14%)
Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
+ S D TI++WD T E +R L GH SV + +D+ +++++ S+D ++++WD++T
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG 203
Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV---KTLTGHREWVRQ 237
+ L T+ H V + F N+ +++ S+D++I +W++A+ + + L GHR V
Sbjct: 204 EMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 238 IKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXX 297
+ D + S S D T +VW+ +T E L GH + C+ + +
Sbjct: 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL----------- 308
Query: 298 XXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
+ +GS D TI+LWD+ G+ L L GH+ VR + F K +VS D
Sbjct: 309 ---------VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 357
Query: 358 LRVWD---------TANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
++VWD A ++TL HS V L F +V+ S D T+ +W+
Sbjct: 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 42/279 (15%)
Query: 99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ 158
K L+GH V+ + + ++ + S D+T+R+WD TGE L H ++V + F+
Sbjct: 166 KRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223
Query: 159 SGKLLVSCSADMSLKLWDMST---YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK 215
++V+CS D S+ +WDM++ + + GH V V F + +++SAS D+TIK
Sbjct: 224 G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279
Query: 216 MWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH 275
+W +T V+TL GH+ + ++ L+ S S+D+T R+W + L GH+
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 276 TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV--------GSGSL- 326
V C+ + + +G+ D IK+WD+ +G+L
Sbjct: 338 LVRCIRF--------------------DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN 365
L TL+ H V + F +VS D T+ +WD N
Sbjct: 378 LRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWDFLN 414
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 243 DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXX 302
D + S D+T ++W T E K L GH +V C+ + V
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---------------- 185
Query: 303 XXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
+ TGS D T+++WDV +G +L TLI H V + F+ G +V+C D+++ VWD
Sbjct: 186 ----IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWD 239
Query: 363 TANKRNM---KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
A+ ++ + L H V +DF Y+V+ S D+T+KVW
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWN 282
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 137/320 (42%), Gaps = 43/320 (13%)
Query: 87 RSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL----MASCSEDATIRLWDYETGEYER 142
R EWI + K P ++H FS +ASC D T++++ ETGE
Sbjct: 592 RLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 651
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
+ H D V AF + +CSAD +K+WD +T + + T H V F S
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711
Query: 203 DFVLSA--SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
+ +L A S D +K+W++ C T+ GH V + SPD LLASCS D T R+W
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 261 LATKETKAELRGH-------------DHTVECVAWAP---------------------GV 286
+ + + + + V+C +W+ G+
Sbjct: 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831
Query: 287 ASE--SISEAAXXXXXXXXXXYLATGSRDK-TIKLWDVGSGSLLFTLIGHDNWVRGVTFH 343
+E + + +LA + + ++LW++ S + GH +WV GV F
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 344 PGGKYLVSCGDDKTLRVWDT 363
P G ++ DD+T+RVW+T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 117/267 (43%), Gaps = 33/267 (12%)
Query: 116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW 175
P +A ED I++ + + GH +V+ I F GK L+S S D +++W
Sbjct: 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Query: 176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV 235
+ T + +Q H V L +S +LS S D T+K+W V TG + T H+ V
Sbjct: 1031 NWQTGDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088
Query: 236 RQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA-PGVASESISEA 294
+S D T +S S D TA++WS EL+GH+ V C A++ G+
Sbjct: 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI-------- 1140
Query: 295 AXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL---------IGHDNWVRGVTFHPG 345
LATG + I++W+V G LL + H WV V F P
Sbjct: 1141 -----------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1189
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMKTL 372
K LVS G L+ W+ A + +T
Sbjct: 1190 SKTLVSAG--GYLKWWNVATGDSSQTF 1214
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA 248
H V F + + S DKT+++++ TG + + H + V S D + +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
+CS D ++W AT + H V C + LA
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT----------------NKSNHLLLA 717
Query: 309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN 368
TGS D +KLWD+ T+ GH N V F P + L SC D TLR+WD +
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 369 MKTLEAHSHFVTSLD 383
K++ F++S D
Sbjct: 778 RKSINVKRFFLSSED 792
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
GH+ V + F + S SED+ I++W+++TG+Y L H ++V+D Q +LL
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQDSRLL 1059
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
S S D ++K+W++ T + + H V A ++ S S DKT K+W
Sbjct: 1060 -SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118
Query: 224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ L GH VR S DG LLA+ ++ R+W+++
Sbjct: 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 117/300 (39%), Gaps = 25/300 (8%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
GH S V V+F P S + S+D TIR+W ET + + L D+ F ++ ++
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
++ L+L T Q + V+ P+ ++V D IK+ E+
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994
Query: 224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA 283
+ GH++ VR I+ + DG L S S D +VW+ T + L+ H TV+
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVK----- 1048
Query: 284 PGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFH 343
L + S D T+K+W+V +G + H V
Sbjct: 1049 --------------DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094
Query: 344 PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
S DKT ++W + L+ H+ V F + TG + +++W
Sbjct: 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
+ H+ V+ + +S S D T ++W ++ L GH V+ AF G
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 162 LLVSCSADMSLKLWDMSTYQCLKT---------MQGHDHNVTGVAFLPNSDFVLSASRDK 212
LL + + +++W++S Q L + H VT V F P+S ++SA
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1198
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+K W VATG +T + +++I VSPD
Sbjct: 1199 YLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 136/316 (43%), Gaps = 43/316 (13%)
Query: 91 EWIPRAPEKFALSGHRSPVIKVIFHPVFSL----MASCSEDATIRLWDYETGEYERALHG 146
EWI + K P ++H FS +ASC D T++++ ETGE +
Sbjct: 603 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL 206
H D V AF + +CSAD +K+WD +T + + T H V F S+ +L
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 207 SA--SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK 264
A S D +K+W++ C T+ GH V + SPD LLASCS D T R+W + +
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 265 ETKAELRGH-------------DHTVECVAWAP---------------------GVASE- 289
+ + + V+C +W+ G+ +E
Sbjct: 783 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 842
Query: 290 -SISEAAXXXXXXXXXXYLATGSRDK-TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+ + +LA + + ++LW++ S + GH +WV GV F P G
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 902
Query: 348 YLVSCGDDKTLRVWDT 363
++ DD+T+RVW+T
Sbjct: 903 SFLTASDDQTIRVWET 918
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 117/267 (43%), Gaps = 33/267 (12%)
Query: 116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW 175
P +A ED I++ + + GH +V+ I F GK L+S S D +++W
Sbjct: 978 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Query: 176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV 235
+ T + +Q H V L +S +LS S D T+K+W V TG + T H+ V
Sbjct: 1038 NWQTGDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1095
Query: 236 RQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA-PGVASESISEA 294
+S D T +S S D TA++WS EL+GH+ V C A++ G+
Sbjct: 1096 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI-------- 1147
Query: 295 AXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL---------IGHDNWVRGVTFHPG 345
LATG + I++W+V G LL + H WV V F P
Sbjct: 1148 -----------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1196
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMKTL 372
K LVS G L+ W+ A + +T
Sbjct: 1197 SKTLVSAG--GYLKWWNVATGDSSQTF 1221
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA 248
H V F + + S DKT+++++ TG + + H + V S D + +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
+CS D ++W AT + H V C + LA
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT----------------NKSNHLLLA 724
Query: 309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN 368
TGS D +KLWD+ T+ GH N V F P + L SC D TLR+WD +
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 369 MKTLEAHSHFVTSLD 383
K++ F++S D
Sbjct: 785 RKSINVKRFFLSSED 799
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
GH+ V + F + S SED+ I++W+++TG+Y L H ++V+D Q +LL
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQDSRLL 1066
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
S S D ++K+W++ T + + H V A ++ S S DKT K+W
Sbjct: 1067 -SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1125
Query: 224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+ L GH VR S DG LLA+ ++ R+W+++
Sbjct: 1126 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 117/300 (39%), Gaps = 25/300 (8%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
GH S V V+F P S + S+D TIR+W ET + + L D+ F ++ ++
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDVVFQENETMV 944
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
++ L+L T Q + V+ P+ ++V D IK+ E+
Sbjct: 945 LAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 1001
Query: 224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA 283
+ GH++ VR I+ + DG L S S D +VW+ T + L+ H TV+
Sbjct: 1002 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVK----- 1055
Query: 284 PGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFH 343
L + S D T+K+W+V +G + H V
Sbjct: 1056 --------------DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1101
Query: 344 PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
S DKT ++W + L+ H+ V F + TG + +++W
Sbjct: 1102 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
+ H+ V+ + +S S D T ++W ++ L GH V+ AF G
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 162 LLVSCSADMSLKLWDMSTYQCLKT---------MQGHDHNVTGVAFLPNSDFVLSASRDK 212
LL + + +++W++S Q L + H VT V F P+S ++SA
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1205
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+K W VATG +T + +++I VSPD
Sbjct: 1206 YLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1236
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 147/315 (46%), Gaps = 53/315 (16%)
Query: 120 LMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKL 174
++ S S D +I LW D G +R L GH V+D+ G+ +S S D L+L
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT----G 230
WD++ + GH +V VAF ++ ++SASRD+TIK+W G C T++ G
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEG 515
Query: 231 HREWVRQIKVSPDGTL---LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
HR+WV ++ SP+ TL + S S D T +VW+L+ + ++ L GH V VA +P
Sbjct: 516 HRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP--- 571
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
A+G +D + LWD+ G L++L + + + + F P +
Sbjct: 572 ---------------DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NR 614
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTL------EAHSH-------------FVTSLDFHRAH 388
Y + + +++WD +K ++ L EA + TSL++
Sbjct: 615 YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674
Query: 389 PYVVTGSVDKTVKVW 403
+ +G D ++VW
Sbjct: 675 STLFSGYTDGVIRVW 689
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 185 TMQGHDHNVTGVAF-LPNSDFVLSASRDKTIKMWEV-----ATGYCVKTLTGHREWVRQI 238
TM+ H VT +A + N+D ++SASRDK+I +W++ A G + LTGH +V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
+S DG S S D R+W LA + GH V VA++
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS--------------- 481
Query: 299 XXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI----GHDNWVRGVTFHPG--GKYLVSC 352
+ + SRD+TIKLW+ G +T+ GH +WV V F P +VS
Sbjct: 482 ---LDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 353 GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
DKT++VW+ +N + TL H+ +V+++ +G D V +W+
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L+GH V V+ S S D +RLWD G R GH V +AF +
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 162 LLVSCSADMSLKLWDM---STYQCLKTMQGHDHNVTGVAFLPNS--DFVLSASRDKTIKM 216
+VS S D ++KLW+ Y + +GH V+ V F PN+ ++SAS DKT+K+
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
W ++ TL GH +V + VSPDG+L AS D +W LA
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 104 GHRSPVIKVIFHP--VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
GHR V V F P + + S S D T+++W+ + L GH V +A G
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
L S D + LWD++ + L +++ + + + F PN + L A+ + IK+W++ +
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNR-YWLCAATEHGIKIWDLES 632
Query: 222 GYCVKTL-------------TGHREWVRQI------KVSPDGTLLASCSNDHTARVWSLA 262
V+ L +G R++ S DG+ L S D RVW +
Sbjct: 633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 127/277 (45%), Gaps = 23/277 (8%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE--RALHGHLDSVQDIAFDQSGK 161
GH+ V KV + P + +AS S DAT +W ++E L GH + V+ +A+ SG
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 162 LLVSCSADMSLKLWDM---STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW- 217
LL +CS D S+ +W++ Y+C+ + H +V V + P+ + + SAS D T+K++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 218 -EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS--LATKETKAELRGHD 274
E C TL GH V + P G LASCS+D T R+W L E G D
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238
Query: 275 HTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGS----LLFTL 330
+ +C+ G S +I + A LAT D I+++ S F+L
Sbjct: 239 PSWKCICTLSGFHSRTIYDIAWCQLTGA----LATACGDDAIRVFQEDPNSDPQQPTFSL 294
Query: 331 I-----GHDNWVRGVTFHPGGK-YLVSCGDDKTLRVW 361
H V V ++P L SC DD + W
Sbjct: 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 28/218 (12%)
Query: 154 IAFDQSGKLLVSCSADMSLKLW--DMSTYQCLKTM-QGHDHNVTGVAFLPNSDFVLSASR 210
+A++ +G LL SC D +++W + ++ C + +GH V VA+ P +++ SAS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 211 DKTIKMWEVATG--YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK---E 265
D T +W+ CV TL GH V+ + +P G LLA+CS D + VW + + E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 266 TKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW--DVGS 323
+ L H V+ V W P LA+ S D T+KL+ +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPS------------------QELLASASYDDTVKLYREEEDD 183
Query: 324 GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
TL GH++ V + F P G+ L SC DD+T+R+W
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 196 VAFLPNSDFVLSASRDKTIKMW--EVATGYCVKTLT-GHREWVRQIKVSPDGTLLASCSN 252
+A+ P + S D+ I++W E + C L+ GH+ VR++ SP G LAS S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 253 DHTARVWSLATK--ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATG 310
D T +W E L GH++ V+ VAWAP LAT
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS------------------GNLLATC 123
Query: 311 SRDKTIKLWDVGSGS---LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW--DTAN 365
SRDK++ +W+V + L H V+ V +HP + L S D T++++ + +
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
TLE H V SL F + + + S D+TV++W
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 30/213 (14%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDY-ETGEYE--RALHGHLDSVQDIAFDQ 158
L GH + V V + P +L+A+CS D ++ +W+ E EYE L+ H V+ + +
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 159 SGKLLVSCSADMSLKLW--DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKM 216
S +LL S S D ++KL+ + + C T++GH+ V +AF P+ + S S D+T+++
Sbjct: 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 217 WE----------VATGY-----CVKTLTG-HREWVRQIKVSPDGTLLASCSNDHTARVW- 259
W +G C+ TL+G H + I LA+ D RV+
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Query: 260 -------SLATKETKAEL-RGHDHTVECVAWAP 284
T A L + H V CVAW P
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTLI---GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW-- 361
LA+ D+ I++W S + + GH VR V + P G YL S D T +W
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ + + TLE H + V S+ + + + T S DK+V VWE
Sbjct: 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 34/173 (19%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH S V + F P +ASCS+D T+R+W + L G+ V D S K
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIW-------RQYLPGNEQGVACSGSDPSWK 242
Query: 162 LLVSCSADMSLKLWDMSTYQ---CLKTMQGHDHNVTGVAFLPNSD-----FVLSASRDKT 213
+ + S S ++D++ Q L T G D + PNSD F L+A +
Sbjct: 243 CICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPTFSLTAHLHQ- 300
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKE 265
H + V + +P + LLASCS+D W E
Sbjct: 301 ----------------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 340 VTFHPGGKYLVSCGDDKTLRVWDT-ANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSV 396
+ ++P G L SCG D+ +R+W T + K++ E H V + + Y+ + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 397 DKTVKVWE 404
D T +W+
Sbjct: 82 DATTCIWK 89
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 21/270 (7%)
Query: 139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAF 198
+ ++ D V+ I F + +++ ++LW+ T ++++Q + V F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 199 LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
+ ++++ S D I+++ TG V H +++R I V P + S S+D T ++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 259 WSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIK 317
W+ + GH+H V CVA+ P S A+G D+T+K
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVK 166
Query: 318 LWDVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
+W +G + FTL G + V V ++P Y+++ DD T+++WD K + TLE
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
H V+ FH P +++GS D T+K+W
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 20/274 (7%)
Query: 105 HRSPVIKVI-FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
+RS +K I FHP + + + LW+YET R++ V+ F +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
+ S D +++++ +T + + + H + +A P +VLS S D T+K+W +
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 224 CV-KTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECV 280
+ +T GH +V + +P D + AS D T +VWSL L G + V V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
+ P Y+ T S D TIK+WD + S + TL GH + V
Sbjct: 191 DYYP----------------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
FHP ++S +D TL++W+++ + KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-EYERALHGHLDSVQDIAFD-QS 159
H + + HP + S S+D T++LW++E E+ GH V +AF+ +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAF--LPNSDFVLSASRDKTIKM 216
S D ++K+W + T+ G + V V + LP+ ++++AS D TIK+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT 276
W+ T CV TL GH V P ++ S S D T ++W+ +T + + L
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 277 VECVAWAP 284
C+A P
Sbjct: 273 SWCIATHP 280
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
L GH S V +FHP ++ S SED T+++W+ T + E+ L+ L+ IA +G
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 161 K 161
+
Sbjct: 283 R 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 21/270 (7%)
Query: 139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAF 198
+ ++ D V+ I F + +++ ++LW+ T ++++Q + V F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 199 LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
+ ++++ S D I+++ TG V H +++R I V P + S S+D T ++
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 259 WSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIK 317
W+ + GH+H V CVA+ P S A+G D+T+K
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVK 166
Query: 318 LWDVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
+W +G + FTL G + V V ++P Y+++ DD T+++WD K + TLE
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
H V+ FH P +++GS D T+K+W
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 20/274 (7%)
Query: 105 HRSPVIKVI-FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
+RS +K I FHP + + + LW+YET R++ V+ F +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
+ S D +++++ +T + + + H + +A P +VLS S D T+K+W +
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 224 CV-KTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECV 280
+ +T GH +V + +P D + AS D T +VWSL L G + V V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
+ P Y+ T S D TIK+WD + S + TL GH + V
Sbjct: 191 DYYP----------------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
FHP ++S +D TL++W+++ + KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-EYERALHGHLDSVQDIAFD-QS 159
H + + HP + S S+D T++LW++E E+ GH V +AF+ +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAF--LPNSDFVLSASRDKTIKM 216
S D ++K+W + T+ G + V V + LP+ ++++AS D TIK+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT 276
W+ T CV TL GH V P ++ S S D T ++W+ +T + + L
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 277 VECVAWAP 284
C+A P
Sbjct: 273 SWCIATHP 280
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
L GH S V +FHP ++ S SED T+++W+ T + E+ L+ L+ IA +G
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 161 K 161
+
Sbjct: 283 R 283
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 21/268 (7%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
++ D V+ I F + +++ ++LW+ T ++++Q + V F+
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
++++ S D I+++ TG V H +++R I V P + S S+D T ++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 261 LATK-ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
+ GH+H V CVA+ P S A+G D+T+K+W
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVKVW 168
Query: 320 DVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
+G + FTL G + V V ++P Y+++ DD T+++WD K + TLE H
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 377 HFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
V+ FH P +++GS D T+K+W
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 20/274 (7%)
Query: 105 HRSPVIKVI-FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
+RS +K I FHP + + + LW+YET R++ V+ F +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
+ S D +++++ +T + + + H + +A P +VLS S D T+K+W +
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 224 CV-KTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECV 280
+ +T GH +V + +P D + AS D T +VWSL L G + V V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
+ P Y+ T S D TIK+WD + S + TL GH + V
Sbjct: 191 DYYP----------------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
FHP ++S +D TL++W+++ + KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-EYERALHGHLDSVQDIAFD-QS 159
H + + HP + S S+D T++LW++E E+ GH V +AF+ +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAF--LPNSDFVLSASRDKTIKM 216
S D ++K+W + T+ G + V V + LP+ ++++AS D TIK+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT 276
W+ T CV TL GH V P ++ S S D T ++W+ +T + + L
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 277 VECVAWAP 284
C+A P
Sbjct: 273 SWCIATHP 280
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH S V +FHP ++ S SED T+++W+ T + E+ L+ L+ IA +G+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
+L+ S S D T+ W D + G R+ GH VQD G +S S D +L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
LWD++T + + GH +V V + ++S SRDKTIK+W + G C+ TL GH +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
WV Q++V P D + S ND + W+L + +A+ GH+ + + +P
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+A+ +D I LW++ + ++TL D V + F P +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
Y ++ ++V+ + + L A H V SL + + G D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
++VW+
Sbjct: 309 VIRVWQV 315
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------D 157
GH+S V+ V S++ S S D TI++W + G+ L GH D V + D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
++S D +K W+++ +Q GH+ N+ + P+ + SA +D I +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
+A + TL+ E V + SP+ LA+ +
Sbjct: 224 NLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAAT 256
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
+L+ S S D T+ W D + G R+ GH VQD G +S S D +L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
LWD++T + + GH +V V + ++S SRDKTIK+W + G C+ TL GH +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
WV Q++V P D + S ND + W+L + +A+ GH+ + + +P
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+A+ +D I LW++ + ++TL D V + F P +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
Y ++ ++V+ + + L A H V SL + + G D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
++VW+
Sbjct: 309 VIRVWQV 315
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------D 157
GH+S V+ V S++ S S D TI++W + G+ L GH D V + D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
++S D +K W+++ +Q GH+ N+ + P+ + SA +D I +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
+A + TL+ E V + SP+ LA+ +
Sbjct: 224 NLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAAT 256
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
+L+ S S D T+ W D + G R+ GH VQD G +S S D +L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
LWD++T + + GH +V V + ++S SRDKTIK+W + G C+ TL GH +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
WV Q++V P D + S ND + W+L + +A+ GH+ + + +P
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+A+ +D I LW++ + ++TL D V + F P +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
Y ++ ++V+ + + L A H V SL + + G D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
++VW+
Sbjct: 309 VIRVWQV 315
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------D 157
GH+S V+ V S++ S S D TI++W + G+ L GH D V + D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
++S D +K W+++ +Q GH+ N+ + P+ + SA +D I +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
+A + TL+ E V + SP+ LA+ +
Sbjct: 224 NLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAAT 256
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 128/299 (42%), Gaps = 43/299 (14%)
Query: 108 PVIKVIFHPVFS----LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
P ++H FS +ASC D T++++ ETGE + H D V AF + +
Sbjct: 619 PHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI 678
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA--SRDKTIKMWEVAT 221
+CS D +K+W+ T + + T H V F +S +L A S D +K+W++
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW---------SLATKETKAELRG 272
C T+ GH V + SPD LLASCS D T ++W S+ K+ L
Sbjct: 739 KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLED 798
Query: 273 HDHTVE----CVAWAPGVASESIS-----------------------EAAXXXXXXXXXX 305
+E C +W+ A ++ +
Sbjct: 799 PQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQN 858
Query: 306 YLATGSRDK-TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
+LA + + ++LW+ S S + GH +WV GV F P G ++ DD+T+R+W+T
Sbjct: 859 HLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 106/246 (43%), Gaps = 28/246 (11%)
Query: 116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW 175
P +A E+ I + + ++ H +V I F K L+S S D +++W
Sbjct: 977 PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Query: 176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV 235
+ +C+ ++GH V L NS +LS S D T+K+W + TG K H+ V
Sbjct: 1037 NWQLDKCI-FLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTV 1094
Query: 236 RQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAA 295
+S D T +S S D TA++WS ELRGH+ V C A++
Sbjct: 1095 LSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS------------ 1142
Query: 296 XXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL--------IGHDNWVRGVTFHPGGK 347
LATG + I++W+V +G LL H WV + F P GK
Sbjct: 1143 ------VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK 1196
Query: 348 YLVSCG 353
L+S G
Sbjct: 1197 MLISAG 1202
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 16/195 (8%)
Query: 189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA 248
H V F + + S DKT+++++ TG + + H + V S D +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
+CS D ++W+ T E H V C + LA
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNS----------------SHHLLLA 723
Query: 309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN 368
TGS D +KLWD+ T+ GH N V F P K L SC D TL++WD +
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Query: 369 MKTLEAHSHFVTSLD 383
K++ F+ D
Sbjct: 784 RKSINVKQFFLNLED 798
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 134/337 (39%), Gaps = 40/337 (11%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH--GHLDSVQDIAFDQS 159
+ GH + V F P L+ASCS D T++LWD + ++++ +++D D
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM- 803
Query: 160 GKLLVSC------------SADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVL 206
+++V C +A + L+D+ T L + GH + F P + +
Sbjct: 804 -EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAV 862
Query: 207 SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS------ 260
A +++W + V GH WV + SPDG+ + S+D T R+W
Sbjct: 863 VALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCK 922
Query: 261 -----------LATKETKAELRGHDHT--VECVAWAPGVASESISEAAXXXXXXXXXXYL 307
+ +E + + DH ++ + G Y+
Sbjct: 923 NSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYI 982
Query: 308 ATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR 367
A G + I++ ++ + + + H V + F K L+S DD ++VW N +
Sbjct: 983 AFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW---NWQ 1039
Query: 368 NMKTLEAHSHFVTSLDFH-RAHPYVVTGSVDKTVKVW 403
K + H T DF + +++ S D TVKVW
Sbjct: 1040 LDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVW 1076
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 116/300 (38%), Gaps = 25/300 (8%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
GH S V V+F P S + S+D TIRLW ET + + L D+ F ++ ++
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW--ETKKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
++ L+L + T Q + V+ P+ ++ + I++ E+
Sbjct: 944 LAVDHIRRLQLINGRTGQIDYLTEAQ---VSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA 283
++ H++ V I+ + D L S S+D +VW+ + LRGH TV+
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVK----- 1054
Query: 284 PGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFH 343
L + S D T+K+W++ +G+ + H V
Sbjct: 1055 --------------DFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS 1100
Query: 344 PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
S DKT ++W + L H+ V F + TG + +++W
Sbjct: 1101 HDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
H+ V + F + S S+DA I++W+++ + L GH ++V+D ++ +LL
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKDFRLLKNSRLL- 1065
Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC 224
S S D ++K+W++ T K H V ++ S S DKT K+W
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLP 1125
Query: 225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE 265
+ L GH VR S D TLLA+ ++ R+W+++ E
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
+S S D T ++W ++ L GH V+ AF LL + + +++W++S
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG 1165
Query: 181 QCL--------KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
+ L + H VT + F P+ ++SA IK W V TG +T +
Sbjct: 1166 ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNG 1223
Query: 233 EWVRQIKVSPD 243
+++I VSPD
Sbjct: 1224 TNLKKIHVSPD 1234
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY--------ERALHGHLDSVQD 153
L GH V F +L+A+ ++ IR+W+ GE E H V D
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
+ F GK+L+ SA +K W++ T + +T + N+ + P+
Sbjct: 1189 LCFSPDGKMLI--SAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 42/306 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
+L+ S S D T+ W D + G R+ GH VQD G +S S D +L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
LWD++T + + GH +V V + ++S SRDKTIK+W + G C+ TL GH +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
WV Q++V P D + S ND + W+L + +A+ GH+ + + +P
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+A+ +D I LW++ + ++TL D V + F P +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
Y ++ ++V+ + + L A H V SL + + G D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWE 404
++VW+
Sbjct: 309 VIRVWQ 314
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------D 157
GH+S V+ V S++ S S D TI++W + G+ L GH D V + D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
++S D +K W+++ +Q GH+ N+ + P+ + SA +D I +W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
+A + TL+ E V + SP+ LA+ +
Sbjct: 224 NLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAAT 256
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
+L+ S S D T+ W D + G R+ GH VQD G +S S D +L+
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
LWD++T + + GH +V V + ++S SRDKTIK+W + G C+ TL GH +
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 143
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
WV Q++V P D + S ND + W+L + +A+ GH+ + + +P
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 200
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+A+ +D I LW++ + ++TL D V + F P +
Sbjct: 201 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 243
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
Y ++ ++V+ + + L A H V SL + + G D
Sbjct: 244 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 302
Query: 399 TVKVWEC 405
++VW+
Sbjct: 303 VIRVWQV 309
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------D 157
GH+S V+ V S++ S S D TI++W + G+ L GH D V + D
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 157
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
++S D +K W+++ +Q GH+ N+ + P+ + SA +D I +W
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
+A + TL+ E V + SP+ LA+ +
Sbjct: 218 NLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAAT 250
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 21/259 (8%)
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA 208
D V+ I F + +++ +++W+ T ++++Q + V F+ ++++
Sbjct: 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG 73
Query: 209 SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETK 267
S D I+++ TG V H +++R I V P + S S+D T ++W+ +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 268 AELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLL 327
GH+H V CVA+ P S A+G D+T+K+W +G +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVKVWSLGQSTPN 176
Query: 328 FTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF 384
FTL G + V V ++P Y+++ DD T+++WD K + TLE H V+ F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 385 HRAHPYVVTGSVDKTVKVW 403
H P +++GS D T+K+W
Sbjct: 237 HPTLPIIISGSEDGTLKIW 255
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 20/272 (7%)
Query: 105 HRSPVIKVI-FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
+RS +K I FHP + + + +W+YET R++ V+ F +
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWI 70
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
+ S D +++++ +T + + + H + +A P +VLS S D T+K+W +
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 224 CV-KTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECV 280
+ +T GH +V + +P D + AS D T +VWSL L G + V V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
+ P Y+ T S D TIK+WD + S + TL GH + V
Sbjct: 191 DYYP----------------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL 372
FHP ++S +D TL++W+++ + KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-EYERALHGHLDSVQDIAFD-QS 159
H + + HP + S S+D T++LW++E E+ GH V +AF+ +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAF--LPNSDFVLSASRDKTIKM 216
S D ++K+W + T+ G + V V + LP+ ++++AS D TIK+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT 276
W+ T CV TL GH V P ++ S S D T ++W+ +T + + L
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 277 VECVAWAP 284
C+A P
Sbjct: 273 SWCIATHP 280
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 23/228 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
KT V G+ F P +VL+ +++W T V+++ VR K
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXX 303
+ S+D RV++ T E + H + +A P
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP------------------T 108
Query: 304 XXYLATGSRDKTIKLWD-VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVW 361
Y+ +GS D T+KLW+ + +L T GH+++V V F+P + G D+T++VW
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 362 DTANKR-NMKTLEAHSHFVTSLDFHRA--HPYVVTGSVDKTVKVWECR 406
N V +D++ PY++T S D T+K+W+ +
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH S V +FHP ++ S SED T+++W+ T + E+ L+ L+ IA +G+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
+L+ S S D T+ W D + G R+ GH VQD G +S S D +L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
LWD++T + + GH +V V + ++S SRDKTIK+W + G C+ TL GH +
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
WV Q++V P D + S ND + W+L + +A+ GH+ + + +P
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
+A+ +D I LW++ + +TL D V + F P +
Sbjct: 207 ---------------DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
Y ++ ++V+ + + L A H V SL + + G D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
++VW+
Sbjct: 309 VIRVWQV 315
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------D 157
GH+S V V S + S S D TI++W + G+ L GH D V + D
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
++S D +K W+++ +Q GH+ N+ + P+ + SA +D I +W
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
+A TL+ E V + SP+ LA+ +
Sbjct: 224 NLAAKKAXYTLSAQDE-VFSLAFSPNRYWLAAAT 256
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 24/284 (8%)
Query: 95 RAPEKFALSGHRSP---VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
+ PE S S + V F P +A+ +ED IR+WD E + L GH +
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 152 QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP-NSDFVLSASR 210
+ + SG LVS S D ++++WD+ T QC T+ D VT VA P + ++ + S
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSL 227
Query: 211 DKTIKMWEVATGYCVKTL-------TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT 263
D+ +++W+ TG+ V+ L TGH++ V + + DG + S S D + ++W+L
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 264 KETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGS 323
K++ + ++ C G +S A Y+ +GS+D+ + WD S
Sbjct: 288 ANNKSDSK-TPNSGTCEVTYIGHKDFVLSVAT-----TQNDEYILSGSKDRGVLFWDKKS 341
Query: 324 GSLLFTLIGHDNWV------RGVTFHPGGKYLVSCGDDKTLRVW 361
G+ L L GH N V G + P + D R+W
Sbjct: 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 126/280 (45%), Gaps = 45/280 (16%)
Query: 151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR 210
++ + F GK L + + D +++WD+ + + +QGH+ ++ + + P+ D ++S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 211 DKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAE 269
D+T+++W++ TG C TL+ + V + VSP DG +A+ S D RVW T
Sbjct: 186 DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 270 L-------RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV- 321
L GH +V V + S + +GS D+++KLW++
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQS------------------VVSGSLDRSVKLWNLQ 286
Query: 322 -----------GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK 370
SG+ T IGH ++V V +Y++S D+ + WD + +
Sbjct: 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346
Query: 371 TLEAHSHFVTSLDFHRA------HPYVVTGSVDKTVKVWE 404
L+ H + V S+ + TGS D ++W+
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 37/234 (15%)
Query: 190 DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS 249
D + V F P+ F+ + + D+ I++W++ V L GH + + + P G L S
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLAT 309
S D T R+W L T + L D V VA +PG Y+A
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPG-----------------DGKYIAA 224
Query: 310 GSRDKTIKLWDVGSGSLLFTL-------IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
GS D+ +++WD +G L+ L GH + V V F G+ +VS D+++++W+
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Query: 363 TANKRNMK------------TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
N N T H FV S+ + Y+++GS D+ V W+
Sbjct: 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 19/119 (15%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTL------------------IGHDNWVRGVTFHPGGK 347
YLATG +KT +++ V GSL+ L D ++R V F P GK
Sbjct: 78 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+L + +D+ +R+WD N++ + L+ H + SLD+ + +V+GS D+TV++W+ R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 102 LSGHRSPVIKVIFHPV---FSLMASCSEDATIRLW---------DYETGEYERALHGHLD 149
L+GHR V + + + S S D T+ W + G +R L GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS 209
V D+A +G VS S D SL+LW++ QC GH +V VAF P++ ++S
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 210 RDKTIKMWEVATGYCVKTLT--GHREWVRQIKVSP--DGTLLASCSNDHTARVWSLATKE 265
RD +++W V G C+ TL+ H +WV ++ SP D ++ S D+ +VW LAT
Sbjct: 129 RDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 266 TKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGS 325
+L+GH + V V +P A+ +D +LWD+ G
Sbjct: 188 LVTDLKGHTNYVTSVTVSP------------------DGSLCASSDKDGVARLWDLTKGE 229
Query: 326 LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF------- 378
L + + + F P +Y + +K +R++D NK + L
Sbjct: 230 ALSEMAAGAP-INQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 379 VTSLDFHRAHPYVVTGSVDKTVKVW 403
S+ + + +G D ++VW
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 29/248 (11%)
Query: 140 YERALHGHLDSVQDIAFDQSGKL---LVSCSADMSLKLW----DMSTYQCL-----KTMQ 187
YE L GH V +A Q+ + +VS S D +L W D + +C + ++
Sbjct: 5 YEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLE 64
Query: 188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL 247
GH V+ VA N +F +SAS D ++++W + G C GH + V + SPD +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 248 ASCSNDHTARVWSLATKETKAELRG-HDHTVECVAWAPGVASESISEAAXXXXXXXXXXY 306
S D+ RVW++ + RG H V CV ++P + + I
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVI--------------- 169
Query: 307 LATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK 366
+G D +K+WD+ +G L+ L GH N+V VT P G S D R+WD
Sbjct: 170 -VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 367 RNMKTLEA 374
+ + A
Sbjct: 229 EALSEMAA 236
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 205 VLSASRDKTIKMW---------EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
V+S SRDKT+ W E + G + L GH +V + +S +G S S DH+
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
R+W+L + + + GH V VA++P + +G RD
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSP------------------DNRQIVSGGRDNA 132
Query: 316 IKLWDVGSGSLLFTLI--GHDNWVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNMKT 371
+++W+V G + TL H +WV V F P +VS G D ++VWD A R +
Sbjct: 133 LRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 372 LEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
L+ H+++VTS+ + D ++W+
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 28/232 (12%)
Query: 99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH--GHLDSVQDIAF 156
++ GH V+ V F P + S D +R+W+ + GE L H D V + F
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRF 160
Query: 157 DQS--GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
S ++VS D +K+WD++T + + ++GH + VT V P+ S+ +D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL---- 270
++W++ G + + + QI SP+ + + + + R++ L K+ EL
Sbjct: 221 RLWDLTKGEALSEMAAGAP-INQICFSPNRYWMCA-ATEKGIRIFDLENKDIIVELAPEH 278
Query: 271 RGHDHTV-ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
+G V ECV SI+ +A L +G D I++W V
Sbjct: 279 QGSKKIVPECV---------SIAWSADGST-------LYSGYTDNVIRVWGV 314
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 311 SRDKTIKLW----DVGSGSLLFTLI-----GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
SRDKT+ W D S + L GH +V V G + VS D +LR+W
Sbjct: 35 SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW 94
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+ N + H+ V S+ F + +V+G D ++VW +
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 18/268 (6%)
Query: 95 RAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDI 154
R +++L GH+ V+ V + AS S DA IRLWD E G+ +++ +
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 128
Query: 155 AFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
AF + L + + + ++ + + + ++ + +A+ P+ ++ S + D I
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD 274
++++ATG + TL GH +R + SPD LL + S+D +++ + L GH
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 275 HTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
V VA+ P + + S DK++K+WDVG+ + + T H
Sbjct: 249 SWVLNVAFCP------------------DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290
Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
+ V GV ++ G +VS GDD+ + ++D
Sbjct: 291 DQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 20/287 (6%)
Query: 121 MASCSEDATIRLWDY--ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
+ + S D +++W + E + + +L GH V + + + S S D ++LWD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
+ +K++ + +AF P+S ++ + + + ++ V +G +L +++ I
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
SPDG LAS + D ++ +AT + L GH + + ++P
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-------------- 216
Query: 299 XXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
L T S D IK++DV +L TL GH +WV V F P + VS DK++
Sbjct: 217 ----DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSV 272
Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
+VWD + + T H V + ++ +V+ D+ + +++C
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319
>pdb|1UUJ|A Chain A, N-Terminal Domain Of Lissencephaly-1 Protein (Lis-1)
pdb|1UUJ|B Chain B, N-Terminal Domain Of Lissencephaly-1 Protein (Lis-1)
pdb|1UUJ|C Chain C, N-Terminal Domain Of Lissencephaly-1 Protein (Lis-1)
pdb|1UUJ|D Chain D, N-Terminal Domain Of Lissencephaly-1 Protein (Lis-1)
Length = 88
Score = 92.0 bits (227), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 2 VLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPA--EVEKKYSGLLEKKWTSVIRL 59
VLSQRQR+ELN+A+ADYL SNGY A FKK+A+L E++KKY+GLLEKKWTSVIRL
Sbjct: 4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDXNEELDKKYAGLLEKKWTSVIRL 63
Query: 60 QKKVIXXXXXXXXXXXXYVEGAP 82
QKKV + G P
Sbjct: 64 QKKVXELESKLNEAKEEFTSGGP 86
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 121/271 (44%), Gaps = 13/271 (4%)
Query: 143 ALHGHLDSVQD-IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
L GH+ SV + F+ + +++ + D ++++D + L + GHD V + + +
Sbjct: 116 TLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 202 SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL--LASCSNDHTARVW 259
++S S D+T+++W++ G C GH VR + + + + + S D+T VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 260 SLATKETKAELRGHDHTVECVAWAPGVASESIS----EAAXXXXXXXXXXYLATGSRDKT 315
L KE+ G +H V P + A + +GS D T
Sbjct: 233 KLP-KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
+ +WDV L+ L GH + + + K +S D T+R+WD N M TL+ H
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+ V L + ++V+ + D +++ W+
Sbjct: 352 TALVGLLRL--SDKFLVSAAADGSIRGWDAN 380
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQ--DIAFDQSGKLLVSCSADMSLKLWDM 177
++ S S D T+R+WD + G GH +V+ DI ++ K +V+ S D +L +W +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 178 STYQCLKTMQGHDHNVTGVAFLP----------------------NSDFVLSASRDKTIK 215
+ G +H+ V P + + V+S S D T+
Sbjct: 235 PKESSVPD-HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 216 MWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH 275
+W+VA C+ L+GH + + + S S D T R+W L E L+GH
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 276 TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDN 335
V + + +L + + D +I+ WD S F+ H N
Sbjct: 354 LVGLLRLSD--------------------KFLVSAAADGSIRGWDANDYSRKFSY-HHTN 392
Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
TF+ LVS +++ ++ N R+ K + A+
Sbjct: 393 LSAITTFYVSDNILVSGSENQ----FNIYNLRSGKLVHAN 428
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 101 ALSGHRSPV--IKVIFHPVFSLMASCSEDATIRLW---------------DY-------- 135
GH S V + ++ + + + S D T+ +W DY
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 136 ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTG 195
E + L GH+ SV+ ++ G ++VS S D +L +WD++ +CL + GH +
Sbjct: 258 ENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
+ +SAS D TI++W++ G + TL GH V +++S L S + D +
Sbjct: 316 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGS 373
Query: 256 ARVW 259
R W
Sbjct: 374 IRGW 377
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS 159
+ LSGH + I+ S S D TIR+WD E GE L GH V + S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL--S 361
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV 219
K LVS +AD S++ WD + Y + H N++ + SD +L + + ++ +
Sbjct: 362 DKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 419
Query: 220 ATGYCV 225
+G V
Sbjct: 420 RSGKLV 425
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 119/271 (43%), Gaps = 13/271 (4%)
Query: 143 ALHGHLDSVQD-IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
L GH SV + F+ + +++ + D ++++D + L + GHD V + + +
Sbjct: 116 TLRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 202 SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL--LASCSNDHTARVW 259
++S S D+T+++W++ G C GH VR + + + + + S D+T VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 260 SLATKETKAELRGHDHTVECVAWAPGVASESIS----EAAXXXXXXXXXXYLATGSRDKT 315
L KE+ G +H V P + A + +GS D T
Sbjct: 233 KLP-KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
+ +WDV L+ L GH + + + K +S D T+R+WD N TL+ H
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH 351
Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+ V L + ++V+ + D +++ W+
Sbjct: 352 TALVGLLRL--SDKFLVSAAADGSIRGWDAN 380
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 52/281 (18%)
Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQ--DIAFDQSGKLLVSCSADMSLKLWDM 177
++ S S D T+R+WD + G GH +V+ DI ++ K +V+ S D +L +W +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 178 STYQCLK-----------------------TMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
+ ++GH +V V+ + + V+S S D T+
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTL 292
Query: 215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD 274
+W+VA C+ L+GH + + + S S D T R+W L E L+GH
Sbjct: 293 IVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHT 352
Query: 275 HTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
V + + +L + + D +I+ WD S F+ H
Sbjct: 353 ALVGLLRLSD--------------------KFLVSAAADGSIRGWDANDYSRKFSY-HHT 391
Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
N TF+ LVS +++ ++ N R+ K + A+
Sbjct: 392 NLSAITTFYVSDNILVSGSENQ----FNIYNLRSGKLVHAN 428
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 101 ALSGHRSPV--IKVIFHPVFSLMASCSEDATIRLW---------------DY-------- 135
GH S V + ++ + + + S D T+ +W DY
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 136 ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTG 195
E + L GH SV+ ++ G ++VS S D +L +WD++ +CL + GH +
Sbjct: 258 ENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
+ +SAS D TI++W++ G TL GH V +++S L S + D +
Sbjct: 316 TIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGS 373
Query: 256 ARVW 259
R W
Sbjct: 374 IRGW 377
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS 159
+ LSGH + I+ S S D TIR+WD E GE L GH V + S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL--S 361
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV 219
K LVS +AD S++ WD + Y + H N++ + SD +L + + ++ +
Sbjct: 362 DKFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 419
Query: 220 ATGYCV 225
+G V
Sbjct: 420 RSGKLV 425
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
++++ H + + +F S +++ S D + LWD+ + Q L++ GH +V + P
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 201 N--SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
+ + +S DK +W++ +G CV+ H V ++ P G AS S+D T R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 259 WSL-ATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIK 317
+ L A +E + ESI A L G D TI
Sbjct: 267 YDLRADREVAI-----------------YSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309
Query: 318 LWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
+WDV GS + L GH+N V + P G S D TLRVW
Sbjct: 310 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 88/211 (41%), Gaps = 46/211 (21%)
Query: 96 APEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQ--D 153
A +K +++ H + + F + + S D T LWD E+G+ ++ HGH V D
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS---- 209
+A ++G VS D +WDM + QC++ + H+ +V V + P+ D S S
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 210 ----------------------------------------RDKTIKMWEVATGYCVKTLT 229
D TI +W+V G V L
Sbjct: 264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323
Query: 230 GHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
GH V ++VSPDGT S S DHT RVW+
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 36/316 (11%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH + V+ + + + S S+D + +WD T E A+ V A+ SG
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 162 LLVSCSADMSLKLW--------DMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDK 212
+ D ++ +M+ + K++ H + ++ +F NSD +L+AS D
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKK--KSVAMHTNYLSACSF-TNSDMQILTASGDG 176
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATKETKAEL 270
T +W+V +G +++ GH V + ++P G S D A VW + + +
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 271 RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL 330
H+ V V + P A+GS D T +L+D+ + + +
Sbjct: 237 ETHESDVNSVRYYP------------------SGDAFASGSDDATCRLYDLRADREV-AI 277
Query: 331 IGHDNWVRG---VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA 387
++ + G V F G+ L + +D T+ VWD + L H + V++L
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 388 HPYVVTGSVDKTVKVW 403
+GS D T++VW
Sbjct: 338 GTAFCSGSWDHTLRVW 353
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+T++GH + V + + + ++S+S+D + +W+ T +T WV +P
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXX 303
G +A D+ V+ L D A VA + +A
Sbjct: 118 GCAIACGGLDNKCSVYPLT----------FDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 304 XXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG--GKYLVSCGDDKTLRVW 361
A+G D T LWDV SG LL + GH V + P G VS G DK VW
Sbjct: 168 QILTASG--DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
D + + ++ E H V S+ ++ + +GS D T ++++ R
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 101/271 (37%), Gaps = 24/271 (8%)
Query: 142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
R L GH + V + + + + +VS S D + +WD T + V A+ P+
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 202 SDFVLSASRDKTIKMWEVA------TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
+ D ++ + K++ H ++ + + + S D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
+W + + + GH V C+ AP + +G DK
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT----------------FVSGGCDKK 221
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
+WD+ SG + H++ V V ++P G S DD T R++D R +
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281
Query: 376 SHF--VTSLDFHRAHPYVVTGSVDKTVKVWE 404
S +S+DF + + G D T+ VW+
Sbjct: 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 43/278 (15%)
Query: 120 LMASCSEDATIRLWD-YET------GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSL 172
++ S S D T+ +W YE G +AL GH V D+A Q +S S D +L
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT--- 229
+LWD+ T K GH V VAF P++ +LSA ++ IK+W + G C +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKE 159
Query: 230 GHREWVRQI----------KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVEC 279
H +WV + KV P AS D +VW+ + + + H+ V
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNH 218
Query: 280 VAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG 339
++ +P Y+ATG +DK + +WD+ + + + +
Sbjct: 219 LSISPN------------------GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQ 260
Query: 340 VTFHPGGKYLVSCGDDKTLRVWD--TANKRNMKTLEAH 375
+ F+P ++ V+ G D+ +++++ T +K + T+EA
Sbjct: 261 IAFNPKLQW-VAVGTDQGVKIFNLMTQSKAPVCTIEAE 297
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 186 MQGHDHNVT----GVAFLPNSD--FVLSASRDKTIKMW----EVATGYCV---KTLTGHR 232
++GH VT G + N D ++S SRDKT+ +W E GY K LTGH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 233 EWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS 292
+V + +S + S S D T R+W L T T GH V VA++P
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-------- 128
Query: 293 EAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI---GHDNWVRGVTF------- 342
L+ G+ ++ IKLW++ G F+ H +WV V +
Sbjct: 129 ---------DNRQILSAGA-EREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSA 177
Query: 343 ---HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT 399
P Y S G D L+VW+T N + T +AH V L Y+ TG DK
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236
Query: 400 VKVWE 404
+ +W+
Sbjct: 237 LLIWD 241
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 15/197 (7%)
Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
AL+GH V + S S D T+RLWD TG + GH V +AF
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN--VTGVAF----------LPNSDFVLSA 208
+ ++S A+ +KLW++ + + +H+ V+ V + P + + S
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 209 SRDKTIKMWEVATGYCVK-TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK 267
D +K+W T + ++ T H V + +SP+G +A+ D +W +
Sbjct: 191 GWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248
Query: 268 AELRGHDHTVECVAWAP 284
T+ +A+ P
Sbjct: 249 QREFDAGSTINQIAFNP 265
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 330 LIGHDNWVRGVTFHPGGK------YLVSCGDDKTLRVWDTANKRNM-------KTLEAHS 376
L GH +WV + K L+S DKT+ +W + K L H+
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 377 HFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
HFV+ L + + + ++ S DKT+++W+ R
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLR 106
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH + + + + L+ S S+D + +WD T A+ V A+ SG
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ D ++++ T + + + GH ++ FL ++ V S S D T +W
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 180
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
++ TG T TGH V + ++PD L S + D +A++W + + GH+ +
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 240
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
+ + P + ATGS D T +L+D+ + L T HDN +
Sbjct: 241 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 281
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
G+T F G+ L++ DD VWD L H + V+ L V TG
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 395 SVDKTVKVWE 404
S D +K+W
Sbjct: 342 SWDSFLKIWN 351
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 110/271 (40%), Gaps = 27/271 (9%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
R L GHL + + + +LLVS S D L +WD T + + V A+ P
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 201 NSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
+ ++V D ++ + T + L GH ++ + D ++ S S D T
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTC 177
Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTI 316
+W + T + GH V ++ AP +G+ D +
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDT------------------RLFVSGACDASA 219
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
KLWDV G T GH++ + + F P G + DD T R++D + + T +H
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHD 278
Query: 377 HF---VTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +TS+ F ++ ++ G D VW+
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+T++GH + + + +S ++SAS+D + +W+ T V + WV +P
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G +A D+ +++L T+E EL GH + C +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 164
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
+ T S D T LWD+ +G T GH V ++ P + VS D + +
Sbjct: 165 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+WD +T H + ++ F TGS D T ++++ R
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH + + + + L+ S S+D + +WD T A+ V A+ SG
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ D ++++ T + + + GH ++ FL ++ V S S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
++ TG T TGH V + ++PD L S + D +A++W + + GH+ +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
+ + P + ATGS D T +L+D+ + L T HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
G+T F G+ L++ DD VWD L H + V+ L V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
S D +K+W
Sbjct: 331 SWDSFLKIWN 340
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 110/271 (40%), Gaps = 27/271 (9%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
R L GHL + + + +LLVS S D L +WD T + + V A+ P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 201 NSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
+ ++V D ++ + T + L GH ++ + D ++ S S D T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTC 166
Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTI 316
+W + T + GH V ++ AP +G+ D +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDT------------------RLFVSGACDASA 208
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
KLWDV G T GH++ + + F P G + DD T R++D + + T +H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHD 267
Query: 377 HF---VTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +TS+ F ++ ++ G D VW+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+T++GH + + + +S ++SAS+D + +W+ T V + WV +P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G +A D+ +++L T+E EL GH + C +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
+ T S D T LWD+ +G T GH V ++ P + VS D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+WD +T H + ++ F TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH + + + + L+ S S+D + +WD T A+ V A+ SG
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ D ++++ T + + + GH ++ FL ++ V S S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
++ TG T TGH V + ++PD L S + D +A++W + + GH+ +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
+ + P + ATGS D T +L+D+ + L T HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
G+T F G+ L++ DD VWD L H + V+ L V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
S D +K+W
Sbjct: 331 SWDSFLKIWN 340
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 110/271 (40%), Gaps = 27/271 (9%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
R L GHL + + + +LLVS S D L +WD T + + V A+ P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 201 NSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
+ ++V D ++ + T + L GH ++ + D ++ S S D T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTC 166
Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTI 316
+W + T + GH V ++ AP +G+ D +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDT------------------RLFVSGACDASA 208
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
KLWDV G T GH++ + + F P G + DD T R++D + + T +H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHD 267
Query: 377 HF---VTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +TS+ F ++ ++ G D VW+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+T++GH + + + +S ++SAS+D + +W+ T V + WV +P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G +A D+ +++L T+E EL GH + C +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
+ T S D T LWD+ +G T GH V ++ P + VS D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+WD +T H + ++ F TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH + + + + L+ S S+D + +WD T A+ V A+ SG
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ D ++++ T + + + GH ++ FL ++ V S S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
++ TG T TGH V + ++PD L S + D +A++W + + GH+ +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
+ + P + ATGS D T +L+D+ + L T HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
G+T F G+ L++ DD VWD L H + V+ L V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
S D +K+W
Sbjct: 331 SWDSFLKIWN 340
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 27/271 (9%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
R L GHL + + + +LL+S S D L +WD T + + V A+ P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 201 NSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
+ ++V D ++ + T + L GH ++ + D ++ S S D T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTC 166
Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTI 316
+W + T + GH V ++ AP +G+ D +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDT------------------RLFVSGACDASA 208
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
KLWDV G T GH++ + + F P G + DD T R++D + + T +H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHD 267
Query: 377 HF---VTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +TS+ F ++ ++ G D VW+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+T++GH + + + +S +LSAS+D + +W+ T V + WV +P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G +A D+ +++L T+E EL GH + C +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
+ T S D T LWD+ +G T GH V ++ P + VS D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+WD +T H + ++ F TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH + + + + L+ S S+D + +WD T A+ V A+ SG
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ D ++++ T + + + GH ++ FL ++ V S S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
++ TG T TGH V + ++PD L S + D +A++W + + GH+ +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
+ + P + ATGS D T +L+D+ + L T HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
G+T F G+ L++ DD VWD L H + V+ L V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
S D +K+W
Sbjct: 331 SWDSFLKIWN 340
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 27/271 (9%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
R L GHL + + + +LL+S S D L +WD T + + V A+ P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 201 NSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
+ ++V D ++ + T + L GH ++ + D ++ S S D T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTC 166
Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTI 316
+W + T + GH V ++ AP +G+ D +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDT------------------RLFVSGACDASA 208
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
KLWDV G T GH++ + + F P G + DD T R++D + + T +H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHD 267
Query: 377 HF---VTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +TS+ F ++ ++ G D VW+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+T++GH + + + +S +LSAS+D + +W+ T V + WV +P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G +A D+ +++L T+E EL GH + C +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
+ T S D T LWD+ +G T GH V ++ P + VS D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+WD +T H + ++ F TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 31/290 (10%)
Query: 127 DATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
D ++ LW +G+ + L + + +A+ + G L ++ ++LWD+ + L+
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD 243
M H V +++ NS + S SR I +V + V TL+GH + V ++ +PD
Sbjct: 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 244 GTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G LAS ND+ VW A E H V+ VAW P ++
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN----------- 290
Query: 300 XXXXXXYLAT--GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--D 355
LAT G+ D+ I++W+V SG+ L + H V + + P K L+S
Sbjct: 291 ------VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 343
Query: 356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
L +W + L+ H+ V SL V + + D+T+++W C
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE----RALHGHLDSVQDIAFD 157
LSGH V + + P +AS D + +W GE + H +V+ +A+
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 158 --QSGKLLVSC-SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS--RDK 212
QS L ++D +++W++ + CL + H V + + P+ ++S
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 344
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
+ +W+ T V L GH V + +SPDG +AS + D T R+W
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 31/290 (10%)
Query: 127 DATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
D ++ LW +G+ + L + + +A+ + G L ++ ++LWD+ + L+
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD 243
M H V +++ NS + S SR I +V + V TL+GH + V ++ +PD
Sbjct: 195 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 244 GTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G LAS ND+ VW A E H V+ VAW P ++
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN----------- 301
Query: 300 XXXXXXYLAT--GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--D 355
LAT G+ D+ I++W+V SG+ L + H V + + P K L+S
Sbjct: 302 ------VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 354
Query: 356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
L +W + L+ H+ V SL V + + D+T+++W C
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE----RALHGHLDSVQDIAFD 157
LSGH V + + P +AS D + +W GE + H +V+ +A+
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 158 --QSGKLLVSC-SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS--RDK 212
QS L ++D +++W++ + CL + H V + + P+ ++S
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 355
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
+ +W+ T V L GH V + +SPDG +AS + D T R+W
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 31/290 (10%)
Query: 127 DATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
D ++ LW +G+ + L + + +A+ + G L ++ ++LWD+ + L+
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD 243
M H V +++ NS + S SR I +V + V TL+GH + V ++ +PD
Sbjct: 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 244 GTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAXXXX 299
G LAS ND+ VW A E H V+ VAW P ++
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN----------- 210
Query: 300 XXXXXXYLAT--GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--D 355
LAT G+ D+ I++W+V SG+ L + H V + + P K L+S
Sbjct: 211 ------VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 263
Query: 356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
L +W + L+ H+ V SL V + + D+T+++W C
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE----RALHGHLDSVQDIAFD 157
LSGH V + + P +AS D + +W GE + H +V+ +A+
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 158 --QSGKLLVSC-SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS--RDK 212
QS L ++D +++W++ + CL + H V + + P+ ++S
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 264
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
+ +W+ T V L GH V + +SPDG +AS + D T R+W
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 119 SLMASCSEDATIRLW---DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK-- 173
S +AS S D T+RLW D G G L+SV +D +LL+ D +
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV---CYDSEKELLLFGGKDTXINGV 86
Query: 174 -LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
L+ S L T+ GH NV ++F V+S S DKT K+W+ G V L H
Sbjct: 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN 142
Query: 233 EWVRQIKV-SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESI 291
V KV S + S D T ++W +D ++ + G+ ++ +
Sbjct: 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ------------NDKVIKTFS---GIHNDVV 187
Query: 292 SEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVS 351
A + + S D IKL D +G +L T GH+++V + P G +VS
Sbjct: 188 RHLAVVDDG-----HFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVS 241
Query: 352 CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
CG+D+T+R+W N + + + + S+D ++ ++ GS D V+++
Sbjct: 242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDC-XSNGDIIVGSSDNLVRIF 292
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 123 SCSEDATIRLWDYETGEYERALHG-HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ 181
+ S D TI+LW + + + G H D V+ +A G +SCS D +KL D T
Sbjct: 160 TASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHF-ISCSNDGLIKLVDXHTGD 216
Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
L+T +GH+ V + LPN D V S D+T+++W G + +T + +
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCX 275
Query: 242 PDGTLLASCSNDHTARVWS------LATKETKAELR 271
+G ++ S+D+ R++S + E K ELR
Sbjct: 276 SNGDIIVG-SSDNLVRIFSQEKSRWASEDEIKGELR 310
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 307 LATGSRDKTIKLW---DVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR---V 360
+A+ SRD T++LW D G++++T G ++ V + + L+ G D + +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQG---FLNSVCYDSEKELLLFGGKDTXINGVPL 88
Query: 361 WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ T+ + + TL H V SL F V++GS DKT KVW+
Sbjct: 89 FATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWK 130
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV-TSLDFH 385
L+TLIGH V ++F G ++S DKT +VW + + L+AH+ V +
Sbjct: 97 LYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVS 152
Query: 386 RAHPYVVTGSVDKTVKVWE 404
+ +T S DKT+K+W+
Sbjct: 153 FSENKFLTASADKTIKLWQ 171
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL 163
GH S V + P ++ SC ED T+R+W E G ++ + S+ + +G ++
Sbjct: 223 GHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDII 281
Query: 164 VSCSADM 170
V S ++
Sbjct: 282 VGSSDNL 288
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE---YERAL----HGHLDSVQDIA 155
+ H+ + V + P SL+A+ S D+T+ +W E +E L GH + V+ +A
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 156 FDQSGKLLVSCSADMSLKLWDMST----YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD 211
+ G L +CS D S+ +W+ Y+C+ +Q H +V V + P+ + S+S D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 212 KTIKMWEVATG--YCVKTLTGHRE--WVRQIKVSPDGTLLASCSNDHTARVW 259
T+++W+ CV L GH W + L S S+D T RVW
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL------TG 230
M++ +K+++ + + F + + + S D+ IK+ V+ Y TL T
Sbjct: 1 MASINLIKSLKLYKEKIWSFDF--SQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETA 56
Query: 231 HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE----------LRGHDHTVECV 280
H++ +R + P +LLA+ S D T +W+ KE A+ + GH++ V+ V
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWA---KEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG----HDNW 336
AW+ YLAT SRDK++ +W+ + I H
Sbjct: 114 AWSN------------------DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 337 VRGVTFHPGGKYLVSCGDDKTLRVWDTANK--RNMKTLEAHSHFVTSLDFHRAHPY--VV 392
V+ V +HP L S D T+R+W + + L H V S DF + +
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 393 TGSVDKTVKVWE 404
+GS D TV+VW+
Sbjct: 216 SGSDDSTVRVWK 227
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDY-ETG-EYE--RALHGHLDSVQDIAFD 157
+ GH + V V + +A+CS D ++ +W+ E+G EYE L H V+ + +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 158 QSGKLLVSCSADMSLKLWD--MSTYQCLKTMQGHDHNVTGVAFLPNSDF--VLSASRDKT 213
S LL S S D ++++W ++C+ + GH+ V F + S S D T
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
+++W+ Y +EWV + + PD
Sbjct: 223 VRVWK----YMGDDEDDQQEWVCE-AILPD 247
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLW-DYETG-EYERALHGHLDSVQDIAFDQS 159
L H V VI+HP +L+AS S D T+R+W DY+ E L+GH +V FD++
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 160 GKLLVSCSA--DMSLKLW--------DMSTYQCLKTMQG-HDHNVTGVAFLPNSDFVLSA 208
+ CS D ++++W D + C + H V VA+ N + S
Sbjct: 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASV 267
Query: 209 SRDKTIKMWEVATG----YCVKTLTGHREWVRQIK-VSPDG-TLLASCSNDHTARVWSL 261
D + ++E G + + L + +K + +G T+LA+ +D WSL
Sbjct: 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 135/328 (41%), Gaps = 44/328 (13%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH V + + P + + S S+D + +W+ T + A+ H V + AF +G+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 162 LLVSCSADMSLKLWDMST-------YQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKT 213
+ D + ++++S+ + + GH + ++P+ + +++ S D+T
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 214 IKMWEVATGYCVKTL-----TGHREWVRQIKV-SPDGTLLASCSNDHTARVWSL-ATKET 266
+W+V TG + +GH V + + S + + S S D T R+W L T
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
GH+ + V + P TGS D T +L+D+ +G
Sbjct: 242 VRTYHGHEGDINSVKFFP------------------DGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 327 LFTLI----GHDN---WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR---NMKTLE-AH 375
L +DN V V F G+ L + + VWDT N+ TL+ +H
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343
Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
++ L + TGS DK +K+W
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 31/239 (12%)
Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
C +T+QGH V + + P ++++SAS+D + +W T + H WV + +
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 242 PDGTLLASCSNDHTARVWSLATKETKAE-------LRGHDHTVECVAWAPGVASESISEA 294
P+G +A D +++L+++ + L GH + P +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR----- 172
Query: 295 AXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL-----IGHDNWVRGVTFHP-GGKY 348
L TGS D+T LWDV +G + GH V ++ +
Sbjct: 173 ------------LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 349 LVSCGDDKTLRVWDT-ANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+S D T+R+WD R ++T H + S+ F TGS D T ++++ R
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 36/283 (12%)
Query: 142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
R L GH V + + +VS S D L +W+ T Q ++ H V AF PN
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 202 SDFVLSASRDKTIKMWEVATGY-------CVKTLTGHREWVRQIKVSPDG-TLLASCSND 253
V D ++ +++ + LTGH+ + + PD T L + S D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 254 HTARVWSLATKETKAELRGHD----HTVECVAWAPGVASESISEAAXXXXXXXXXXYLAT 309
T +W + T + + + G + HT + V S SI+ +
Sbjct: 180 QTCVLWDVTTGQ-RISIFGSEFPSGHTAD-------VLSLSINS--------LNANMFIS 223
Query: 310 GSRDKTIKLWDVGSGS-LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN 368
GS D T++LWD+ S + T GH+ + V F P G+ + DD T R++D
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 369 MKTLEAHSH-------FVTSLDFHRAHPYVVTGSVDKTVKVWE 404
++ VTS+ F + + G + VW+
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 13/173 (7%)
Query: 103 SGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYE-TGEYERALHGHLDSVQDIAFDQSG 160
SGH + V+ + + + ++ S S D T+RLWD T R HGH + + F G
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 161 KLLVSCSADMSLKLWDMSTYQCLKTMQGH-DHN------VTGVAFLPNSDFVLSASRDKT 213
+ + S D + +L+DM T L+ D N VT VAF + + + +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 214 IKMWEVATGYCVKTL----TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
+W+ V L H + + +S DG+ L + S D ++W+ +
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
+ H + + D D GK L +CS+D ++K++++ T++ + T+ GH+ V V + P
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGY--CVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
+L S S D + +W+ G + H V ++ +P G LL S+D
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
V T + + H V +WAP E TG D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-----FVTGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
+K+W S + + TL GH +WVR V + P YL S D+T +W N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 368 N--MKTLEAHSHF 378
KTL F
Sbjct: 241 GPWKKTLLKEEKF 253
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 28/187 (14%)
Query: 102 LSGHRSPVIKVIF-HPVF-SLMASCSEDATIRLWDYETGEYER-ALHG-HLDSVQDI--A 155
L+GH PV +V + HP F +++ASCS D + +W E G + + A+H H SV + A
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLK--TMQGHDHNVTGVAFLP------------- 200
+ G LL+ S+D + + + + H V ++ P
Sbjct: 109 PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 201 NSDFVLSASRDKTIKMWEV---ATGYCVK-TLTGHREWVRQIKVSPDGTL---LASCSND 253
S ++ D +K+W+ A Y ++ TL GH +WVR + SP L LAS S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 254 HTARVWS 260
T +W+
Sbjct: 229 RTCIIWT 235
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
+ H + + D D GK L +CS+D ++K++++ T++ + T+ GH+ V V + P
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
+L S S D + +W+ G + H V ++ +P G LL S+D
Sbjct: 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
V T + + H V +WAP +I E ++ TG D
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 182
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
+K+W S + + TL GH +WVR V + P YL S D+T +W N++
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242
Query: 368 N--MKTLEAHSHF 378
KTL F
Sbjct: 243 GPWKKTLLKEEKF 255
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 28/187 (14%)
Query: 102 LSGHRSPVIKVIF-HPVF-SLMASCSEDATIRLWDYETGEYER-ALHG-HLDSVQDI--A 155
L+GH PV +V + HP F +++ASCS D + +W E G + + A+H H SV + A
Sbjct: 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 110
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLK--TMQGHDHNVTGVAFLP------------- 200
+ G LL+ S+D + + + + H V ++ P
Sbjct: 111 PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170
Query: 201 NSDFVLSASRDKTIKMWEV---ATGYCVK-TLTGHREWVRQIKVSPDGTL---LASCSND 253
S ++ D +K+W+ A Y ++ TL GH +WVR + SP L LAS S D
Sbjct: 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Query: 254 HTARVWS 260
T +W+
Sbjct: 231 RTCIIWT 237
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 324 GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN--MKTLEAHSHFVTS 381
GS++ H+ + GK L +C DKT+++++ + + + TL H V
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 382 LDFHRAHP----YVVTGSVDKTVKVWE 404
+D+ AHP + + S D V +W+
Sbjct: 61 VDW--AHPKFGTILASCSYDGKVLIWK 85
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
+ H + + D D GK L +CS+D ++K++++ T++ + T+ GH+ V V + P
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
+L S S D + +W+ G + H V ++ +P G LL S+D
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
V T + + H V +WAP +I E ++ TG D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
+K+W S + + TL GH +WVR V + P YL S D+T +W N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 368 N--MKTLEAHSHF 378
KTL F
Sbjct: 241 GPWKKTLLKEEKF 253
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 28/187 (14%)
Query: 102 LSGHRSPVIKVIF-HPVF-SLMASCSEDATIRLWDYETGEYER-ALHG-HLDSVQDI--A 155
L+GH PV +V + HP F +++ASCS D + +W E G + + A+H H SV + A
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLK--TMQGHDHNVTGVAFLP------------- 200
+ G LL+ S+D + + + + H V ++ P
Sbjct: 109 PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 201 NSDFVLSASRDKTIKMWEV---ATGYCVK-TLTGHREWVRQIKVSPDGTL---LASCSND 253
S ++ D +K+W+ A Y ++ TL GH +WVR + SP L LAS S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 254 HTARVWS 260
T +W+
Sbjct: 229 RTCIIWT 235
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
+ H + + D D GK + +CS+D ++K++++ T++ + T+ GH+ V V + P
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
+L S S D + +W+ G + H V ++ +P G +L S+D
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
V T + + H V +WAP +I E ++ TG D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
+K+W S + + TL GH +WVR V + P Y+ S D+T +W N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 28/187 (14%)
Query: 102 LSGHRSPVIKVIF-HPVF-SLMASCSEDATIRLWDYETGEYER-ALHG-HLDSVQDI--A 155
L+GH PV +V + HP F +++ASCS D + +W E G + + A+H H SV + A
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLK--TMQGHDHNVTGVAFLP------------- 200
+ G +L+ S+D + + + + H V ++ P
Sbjct: 109 PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 201 NSDFVLSASRDKTIKMWEV---ATGYCVK-TLTGHREWVRQIKVSPDGTL---LASCSND 253
S ++ D +K+W+ A Y ++ TL GH +WVR + SP L +AS S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 254 HTARVWS 260
T +W+
Sbjct: 229 RTCIIWT 235
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 14/247 (5%)
Query: 135 YETGEYERA--LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
Y G + +A L GH + + +++ G LL SCS D S +W + L T+ GH
Sbjct: 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT 76
Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREW-----VRQIKVSPDGTLL 247
+ + + + ++ S D +IK+W+V+ G CV T W V++++ SP G
Sbjct: 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT------WKSPVPVKRVEFSPCGNYF 130
Query: 248 ASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYL 307
+ ++ S+ E + + H+ T + + +AA Y+
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 308 ATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK 366
G +D I +DV + I H+ + + F P Y ++ D + D +
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Query: 367 RNMKTLE 373
+ +K E
Sbjct: 251 QVLKKYE 257
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L+GH P+ +V ++ L+ SCS+D++ +W GE L GH ++ I D K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLS 207
V+ SAD S+KLWD+S QC+ T + V V F P ++ L+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLA 132
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
L+ GS L GH+ + V ++ G L SC D + VW + N + TL+ H+
Sbjct: 15 NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT 74
Query: 377 HFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ S+D Y VTGS D ++K+W+
Sbjct: 75 GTIWSIDVDCFTKYCVTGSADYSIKLWD 102
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 126 EDATIRLWDYETG-EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
+D I +D EY ++ H S+ D+ F ++ S D + L D+ST Q LK
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254
Query: 185 TMQGHDHNVTGVAFLPNSDFVL----SASRDKTI--------------KMWEVATGYCVK 226
+ D + P +F++ ++D T K++E G
Sbjct: 255 KYET-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG---- 309
Query: 227 TLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
+ GH + + +SP GT AS D R+
Sbjct: 310 RVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 171 SLKLWDMS--TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL 228
+L +WD++ T + + +A P+S S D I +W++ V+
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVAS 288
GH + I +S DGT L + D+T R W L +E + +L+ HD T + +
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL--REGR-QLQQHDFTSQIFSLGYCPTG 236
Query: 289 ESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKY 348
E +LA G +++ V + L H++ V + F GK+
Sbjct: 237 E----------------WLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKW 279
Query: 349 LVSCGDDKTLRVWDTANKRNM-KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
VS G D L W T ++ ++ E+ S V S D Y+VTGS DK V+E
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSS--VLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 307 LATGSRDKTIKLWDVGSGS--LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA 364
L G T+ +WD+ + + + L + P K SC D + VWD
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 365 NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
N+ ++ + H+ + +D + TG +D TV+ W+ R
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 233 EWVRQIKVSPDGTLLASCSNDHTARVWSLA--TKETKAELRGHDHTVECVAWAPGVASES 290
++R K+ PDG L T +W LA T KAEL + AP + +
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL---------TSSAPACYALA 148
Query: 291 ISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLV 350
IS + + D I +WD+ + +L+ GH + + G L
Sbjct: 149 ISPDSKV---------CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199
Query: 351 SCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV 402
+ G D T+R WD R ++ + S + SL + ++ G V+V
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEV 250
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 18/181 (9%)
Query: 81 APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
APT R E AP +AL+ SP KV F SC D I +WD
Sbjct: 128 APT--PRIKAELTSSAPACYALA--ISPDSKVCF--------SCCSDGNIAVWDLHNQTL 175
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDH--NVTGVAF 198
R GH D I G L + D +++ WD+ + +Q HD + + +
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFTSQIFSLGY 232
Query: 199 LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
P +++ +++ V + L H V +K + G S D+
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291
Query: 259 W 259
W
Sbjct: 292 W 292
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 316 IKLWDV---GSGSLLFTL--IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA 364
+K+WD+ G+ S + L + DN++R P G L+ G+ TL +WD A
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM 186
+ I++ D H+ + + F SG+ L+S S DM LK+W + +T+
Sbjct: 118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177
Query: 187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT 229
GH VT +A + VLSAS D TI++WE TG + T
Sbjct: 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
H S + K+ F P + S S+D +++W + G R L GH +V DIA G+ ++
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDH---NVTGVAFLPNSDFVL---SASRDKTIKMWE 218
S S D +++LW+ T + T ++ V +A +D L S S+ ++
Sbjct: 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257
Query: 219 ----VATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
V G+ +T H + ++ + SC+
Sbjct: 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL 246
Q H +T + F P+ + ++S+S+D +K+W V G +TL GHR V I + G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 247 LASCSNDHTARVWSLATKET 266
+ S S D T R+W T T
Sbjct: 196 VLSASLDGTIRLWECGTGTT 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV 392
H + + + F P G+ L+S D L++W + N +TL H VT + V+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 393 TGSVDKTVKVWEC 405
+ S+D T+++WEC
Sbjct: 198 SASLDGTIRLWEC 210
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 92/255 (36%), Gaps = 37/255 (14%)
Query: 148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLS 207
+D+ + F++ G L D L++ K ++ D+ A L F+L
Sbjct: 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILG 115
Query: 208 ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK 267
+ + IK+ + + H + ++K P G L S S D ++WS+
Sbjct: 116 TT-EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 268 AELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLL 327
L GH TV +A + + S D TI+LW+ G+G+ +
Sbjct: 175 RTLIGHRATVTDIAIID------------------RGRNVLSASLDGTIRLWECGTGTTI 216
Query: 328 FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA 387
T +N GV + G D+ L T+ K N L+F
Sbjct: 217 HTFNRKENPHDGVN-----SIALFVGTDRQLHEISTSKKNN-------------LEFGTY 258
Query: 388 HPYVVTGSVDKTVKV 402
YV+ G V + V
Sbjct: 259 GKYVIAGHVSGVITV 273
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIA-F 156
L GHR+ V + + S S D TIRLW+ TG + R + H D V IA F
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH-DGVNSIALF 235
Query: 157 DQSGKLL--VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
+ + L +S S +L+ Y + GH V+GV + N S+++TI
Sbjct: 236 VGTDRQLHEISTSKKNNLEFGTYGKY----VIAGH---VSGVITVHN-----VFSKEQTI 283
Query: 215 KMWEVATGYC 224
++ T C
Sbjct: 284 QLPSKFTCSC 293
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM 186
+ I++ D H+ + + F SG+ L+S S DM LK+W + +T+
Sbjct: 115 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 174
Query: 187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT 229
GH VT +A + VLSAS D TI++WE TG + T
Sbjct: 175 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
H S + K+ F P + S S+D +++W + G R L GH +V DIA G+ ++
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDH---NVTGVAFLPNSDFVL---SASRDKTIKMWE 218
S S D +++LW+ T + T ++ V +A +D L S S+ ++
Sbjct: 195 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 254
Query: 219 ----VATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
V G+ +T H + ++ + SC+
Sbjct: 255 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL 246
Q H +T + F P+ + ++S+S+D +K+W V G +TL GHR V I + G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 247 LASCSNDHTARVWSLATKET 266
+ S S D T R+W T T
Sbjct: 193 VLSASLDGTIRLWECGTGTT 212
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV 392
H + + + F P G+ L+S D L++W + N +TL H VT + V+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 393 TGSVDKTVKVWEC 405
+ S+D T+++WEC
Sbjct: 195 SASLDGTIRLWEC 207
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 92/255 (36%), Gaps = 37/255 (14%)
Query: 148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLS 207
+D+ + F++ G L D L++ K ++ D+ A L F+L
Sbjct: 53 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILG 112
Query: 208 ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK 267
+ + IK+ + + H + ++K P G L S S D ++WS+
Sbjct: 113 TT-EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 268 AELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLL 327
L GH TV +A + + S D TI+LW+ G+G+ +
Sbjct: 172 RTLIGHRATVTDIAIID------------------RGRNVLSASLDGTIRLWECGTGTTI 213
Query: 328 FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA 387
T +N GV + G D+ L T+ K N L+F
Sbjct: 214 HTFNRKENPHDGVN-----SIALFVGTDRQLHEISTSKKNN-------------LEFGTY 255
Query: 388 HPYVVTGSVDKTVKV 402
YV+ G V + V
Sbjct: 256 GKYVIAGHVSGVITV 270
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIA-F 156
L GHR+ V + + S S D TIRLW+ TG + R + H D V IA F
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH-DGVNSIALF 232
Query: 157 DQSGKLL--VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
+ + L +S S +L+ Y + GH V+GV + N S+++TI
Sbjct: 233 VGTDRQLHEISTSKKNNLEFGTYGKY----VIAGH---VSGVITVHN-----VFSKEQTI 280
Query: 215 KMWEVATGYC 224
++ T C
Sbjct: 281 QLPSKFTCSC 290
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
L GH+ + ++P + + S S+D TI LWD E GH V+D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
+A+ L S + D L +WD K T+ H V ++F P S+F+L +
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
S DKT+ +W++ + + H++ + Q++ SP + T+LAS D VW L+
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFT 329
LRGH ++W P + YL + S D TI LWD+ +
Sbjct: 179 LRGHQKEGYGLSWNPNLNG-----------------YLLSASDDHTICLWDINATPKEHR 221
Query: 330 LI-------GHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHSHF 378
+I GH V V +H + L S DD+ L +WDT N K T++AH+
Sbjct: 222 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 281
Query: 379 VTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
V L F+ +++ TGS DKTV +W+ R
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLR 310
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEV-ATGYCVKTLTGHREWVRQIKVSPD 243
++GH G+++ PN + ++LSAS D TI +W++ AT + + + V D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 244 -------GTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
+L S ++D +W T + H V C+++ P SE I
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP--YSEFI-- 294
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
LATGS DKT+ LWD+ + L L + H + + V + P + L S
Sbjct: 295 -------------LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
G D+ L VWD + ++ E H+ ++ ++ P+++ S
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 401
Query: 397 DKTVKVWE 404
D ++VW+
Sbjct: 402 DNIMQVWQ 409
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 117/280 (41%), Gaps = 23/280 (8%)
Query: 147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST--YQCLKTMQGHDHNVTGVAFLPN--S 202
H D + D D G L +CS+D S+K++D+ + ++GH+ V VA+
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 203 DFVLSASRDKTIKMWEVATGYCVKT--LTGHREWVRQIKVSP-DGTLLASCSNDHTARVW 259
+ + S S D+ + +W G K+ GH V + +P D L+ +C + A
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Query: 260 SLATKETKAELR--GHDHTVEC--VAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
T E + E++ + HT+ C V+WAP V S+ + + A+G D
Sbjct: 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF-ASGGCDNL 190
Query: 316 IKLW---DVGSGSLLFTLIGHDNWVRGVTFHPG----GKYLVSCGDDKTLRVWD----TA 364
IKLW + G L H +WVR V + P + SC D + +W ++
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 365 NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
N + K L + V + + + D V +W+
Sbjct: 251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 102 LSGHRSPVIKVIF-HPVF-SLMASCSEDATIRLWDYETGEYERALH--GHLDSVQDIAF- 156
L GH PV +V + HP++ +++ASCS D + +W E G +E++ GH SV + +
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 157 -DQSGKLLVSCSADMSLKLWDMS---TYQCLKTMQGHDHNVTGVAFLP------------ 200
G +L S+D ++ L + ++ K H V++ P
Sbjct: 113 PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 172
Query: 201 --NSDFV---LSASRDKTIKMW---EVATGYCVKTLTGHREWVRQIKVSPDGTL----LA 248
+++ S D IK+W E + L H +WVR + +P L +A
Sbjct: 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232
Query: 249 SCSNDHTARVWS 260
SCS D +W+
Sbjct: 233 SCSQDGRVFIWT 244
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSL--ATKETKAELRGHDHTVECVAWAPGV 286
T H + + ++ GT LA+CS+D + +++ + + A+LRGH+ V VAWA +
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 287 ASESISEAAXXXXXXXXXXYLATGSRDKTIKLW--DVGSGSLLFTLIGHDNWVRGVTFHP 344
LA+ S D+ + +W + G+ GHD+ V V + P
Sbjct: 70 YGN----------------ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP 113
Query: 345 GGKYLV-SCG 353
L+ +CG
Sbjct: 114 HDYGLILACG 123
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
L GH+ + ++P + + S S+D TI LWD E GH V+D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
+A+ L S + D L +WD K T+ H V ++F P S+F+L +
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
S DKT+ +W++ + + H++ + Q++ SP + T+LAS D VW L+
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFT 329
LRGH ++W P + YL + S D TI LWD+ +
Sbjct: 181 LRGHQKEGYGLSWNPNLNG-----------------YLLSASDDHTICLWDINATPKEHR 223
Query: 330 LI-------GHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHSHF 378
+I GH V V +H + L S DD+ L +WDT N K T++AH+
Sbjct: 224 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 283
Query: 379 VTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
V L F+ +++ TGS DKTV +W+ R
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLR 312
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEV-ATGYCVKTLTGHREWVRQIKVSPD 243
++GH G+++ PN + ++LSAS D TI +W++ AT + + + V D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 244 -------GTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
+L S ++D +W T + H V C+++ P SE I
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP--YSEFI-- 296
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
LATGS DKT+ LWD+ + L L + H + + V + P + L S
Sbjct: 297 -------------LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
G D+ L VWD + ++ E H+ ++ ++ P+++ S
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 403
Query: 397 DKTVKVWE 404
D ++VW+
Sbjct: 404 DNIMQVWQ 411
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
L GH+ + ++P + + S S+D TI LWD E GH V+D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
+A+ L S + D L +WD K T+ H V ++F P S+F+L +
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
S DKT+ +W++ + + H++ + Q++ SP + T+LAS D VW L+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFT 329
LRGH ++W P + YL + S D TI LWD+ +
Sbjct: 177 LRGHQKEGYGLSWNPNLNG-----------------YLLSASDDHTICLWDINATPKEHR 219
Query: 330 LI-------GHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHSHF 378
+I GH V V +H + L S DD+ L +WDT N K T++AH+
Sbjct: 220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279
Query: 379 VTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
V L F+ +++ TGS DKTV +W+ R
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLR 308
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEV-ATGYCVKTLTGHREWVRQIKVSPD 243
++GH G+++ PN + ++LSAS D TI +W++ AT + + + V D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 244 -------GTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
+L S ++D +W T + H V C+++ P SE I
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP--YSEFI-- 292
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
LATGS DKT+ LWD+ + L L + H + + V + P + L S
Sbjct: 293 -------------LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
G D+ L VWD + ++ E H+ ++ ++ P+++ S
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399
Query: 397 DKTVKVWE 404
D ++VW+
Sbjct: 400 DNIMQVWQ 407
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
+ H + + D D GK +CS+D ++K++++ T++ + T+ GH+ V V + P
Sbjct: 6 NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
+L S S D + +W+ G + H V ++ +P G L S+D
Sbjct: 66 FGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
V T + + H V +WAP +I E ++ TG D
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
+K+W S + + TL GH +WVR V + P Y S D+T +W N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQ 240
Query: 368 N--MKTLEAHSHF 378
KTL F
Sbjct: 241 GPWKKTLLKEEKF 253
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 28/187 (14%)
Query: 102 LSGHRSPVIKVIF-HPVF-SLMASCSEDATIRLWDYETGEYER-ALH----GHLDSVQDI 154
L+GH PV +V + HP F +++ASCS D + +W E G + + A+H ++SVQ
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 155 AFDQSGKLLVSCS-ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP------------- 200
+ LLV+ S +S+ + + + H V ++ P
Sbjct: 109 PHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 201 NSDFVLSASRDKTIKMWEV---ATGYCVK-TLTGHREWVRQIKVSPDGTL---LASCSND 253
S ++ D +K+W+ A Y ++ TL GH +WVR + SP L AS S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
Query: 254 HTARVWS 260
T +W+
Sbjct: 229 RTCIIWT 235
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVAT----GYCVKT---LTGHREWVRQ 237
++GH G+++ PN S +LSAS D TI +W+++ G V TGH V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 238 IKVSP-DGTLLASCSNDHTARVWSLATKETKA---ELRGHDHTVECVAWAPGVASESISE 293
+ +L S ++D +W + T + H V C+++ P SE I
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP--YSEFI-- 288
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
LATGS DKT+ LWD+ + L L + H + + V + P + L S
Sbjct: 289 -------------LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
G D+ L VWD + ++ E H+ ++ ++ P+V+ S
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 395
Query: 397 DKTVKVWE 404
D ++VW+
Sbjct: 396 DNIMQVWQ 403
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
L GH+ + ++P S + S S+D TI LWD E GH V+D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
+++ L S + D L +WD + K ++ H V ++F P S+F+L +
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
S DKT+ +W++ + + H++ + Q++ SP + T+LAS D VW L+
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 33/151 (21%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGS------ 323
LRGH ++W P ++ +L + S D TI LWD+ +
Sbjct: 173 LRGHQKEGYGLSWNPNLSG-----------------HLLSASDDHTICLWDISAVPKEGK 215
Query: 324 ---GSLLFTLIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHS 376
+FT GH V V++H + L S DD+ L +WDT + K +++AH+
Sbjct: 216 VVDAKTIFT--GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 377 HFVTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
V L F+ +++ TGS DKTV +W+ R
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 121 MASCSEDATIRLWDYETGEYERAL-------HGHLDSVQDIAFD-QSGKLLVSCSADMSL 172
+ S S+D T+ LWD G E + GH V+D+A+ L S + D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 173 KLWDM---STYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVAT-GYCVKT 227
+WD +T + + H V ++F P S+F+L + S DKT+ +W++ + T
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 228 LTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
H++ + Q+ SP + T+LAS D VW L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGY-------CVKTLTGHREWVRQ 237
++GH G+++ N S +LSAS D T+ +W++ G TGH V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 238 IKVSP-DGTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
+ +L S ++D +W + T + H V C+++ P SE I
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP--YSEFI-- 290
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
LATGS DKT+ LWD+ + L L T H + + V + P + L S
Sbjct: 291 -------------LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
G D+ L VWD + ++ E H+ ++ ++ P+V+ S
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 397 DKTVKVWE 404
D ++W+
Sbjct: 398 DNIXQIWQ 405
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 306 YLATGSRDKTIKLWDVGSGS---------LLFTLIGHDNWVRGVTFHPGGKYLV-SCGDD 355
+L + S D T+ LWD+ +G +FT GH V V +H + L S DD
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHESLFGSVADD 251
Query: 356 KTLRVWDTANKRNMKT---LEAHSHFVTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
+ L +WDT + K ++AH+ V L F+ +++ TGS DKTV +W+ R
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 121 MASCSEDATIRLWDYETGEYERAL-------HGHLDSVQDIAFD-QSGKLLVSCSADMSL 172
+ S S+D T+ LWD G E + GH V+D+A+ L S + D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 173 KLWDM---STYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVAT-GYCVKT 227
+WD +T + + H V ++F P S+F+L + S DKT+ +W++ + T
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 228 LTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
H++ + Q+ SP + T+LAS D VW L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGY-------CVKTLTGHREWVRQ 237
++GH G+++ N S +LSAS D T+ +W++ G TGH V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 238 IKVSP-DGTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
+ +L S ++D +W + T + H V C+++ P SE I
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP--YSEFI-- 290
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
LATGS DKT+ LWD+ + L L T H + + V + P + L S
Sbjct: 291 -------------LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
G D+ L VWD + ++ E H+ ++ ++ P+V+ S
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 397 DKTVKVWE 404
D +++W+
Sbjct: 398 DNIMQIWQ 405
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 306 YLATGSRDKTIKLWDVGSGS---------LLFTLIGHDNWVRGVTFHPGGKYLV-SCGDD 355
+L + S D T+ LWD+ +G +FT GH V V +H + L S DD
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHESLFGSVADD 251
Query: 356 KTLRVWDTANKRNMKT---LEAHSHFVTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
+ L +WDT + K ++AH+ V L F+ +++ TGS DKTV +W+ R
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 160 GKLLVSCSADMSLKLWDM------STYQCLKTMQ-GHDH------NVTGVAFLP-NSDFV 205
G+ ++S +D + L+D+ S Y C G DH +V V + P ++
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 206 LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT---LLASCSNDHTARVWSLA 262
S+S DKT+K+W+ T E V +SP T L+A + ++ L
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 263 TKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVG 322
+ L+GH + V+W+P LAT S D +KLWDV
Sbjct: 175 SGSCSHILQGHRQEILAVSWSP-----------------RYDYILATASADSRVKLWDVR 217
Query: 323 SGS-LLFTL---------------IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK 366
S L TL H+ V G+ F G +L++ G D +R+W+++N
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 367 RN 368
N
Sbjct: 278 EN 279
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 49/246 (19%)
Query: 98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD 157
E+ S H SPV L+A + ++L D ++G L GH + +++
Sbjct: 141 EETVYSHHMSPV-----STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195
Query: 158 -QSGKLLVSCSADMSLKLWDMSTYQ-CLKTMQGHD-------------HN--VTGVAFLP 200
+ +L + SAD +KLWD+ CL T+ H+ HN V G+ F
Sbjct: 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH------ 254
+ +L+ D +++W + G TL + + K T+ CS++
Sbjct: 256 DGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313
Query: 255 -TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRD 313
T V+++ + E L+GH TV+C + L +GSRD
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE------------------LYSGSRD 355
Query: 314 KTIKLW 319
I W
Sbjct: 356 CNILAW 361
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 26/218 (11%)
Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEV--ATGYCVKTLTG--HREWVRQIKVSPDGTLLA 248
VT VA++ +L AS +++WE+ V H + V+ + V DGT
Sbjct: 97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
S D + +VW L+ K H V CVA PG +L+
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG----------------KDTIFLS 199
Query: 309 TGSRDKTIKLWDV--GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK-TLRVWDTAN 365
G D I LWD + D VT+HP +CGD+ + + + N
Sbjct: 200 CG-EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
Query: 366 KRNMKTLEAHSHFVTSLDF-HRAHPYVVTGSVDKTVKV 402
+ +T HS +T L + + + P++ + S D TV V
Sbjct: 259 PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 125 SEDATIRLWDYETGE----YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
S+ + LW+ E + A + H D V+ ++ G VS D S+K+WD+S
Sbjct: 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171
Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFV-LSASRDKTIKMWE 218
LK+ H V VA P D + LS D I +W+
Sbjct: 172 AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR 210
V + + G L + + ++D+ + L+TM GH V +++ N + S SR
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR 194
Query: 211 DKTIKMWEV-ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE 269
I +V + + TL GH V + DG LAS ND+ ++W + K
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLAT--GSRDKTIKLWDVGSGSLL 327
H+ V+ VAW P ++ LAT G+ DK I W+ +G+ +
Sbjct: 255 KTNHNAAVKAVAWCPWQSN-----------------LLATGGGTMDKQIHFWNAATGARV 297
Query: 328 FTLIGHDNWVRGVTFHPGGKYLVSCG--DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH 385
T + + V + + P K ++S D L +W ++ K ++ +H L +
Sbjct: 298 NT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL-YS 355
Query: 386 RAHP---YVVTGSVDKTVKVWEC 405
P + T + D+ +K W
Sbjct: 356 ALSPDGRILSTAASDENLKFWRV 378
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD--QS 159
L GH S V + + +AS D +++WD + + H +V+ +A+ QS
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 160 GKLLV-SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS--RDKTIKM 216
L + D + W+ +T + T+ VT + + P+S ++S D + +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 217 WEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
W ++ K + H V +SPDG +L++ ++D + W
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 99 KFALSGHRSPVIKVIFHPVFS-LMASC--SEDATIRLWDYETGEYERALHGHLDSVQDIA 155
KF + H + V V + P S L+A+ + D I W+ TG + V +
Sbjct: 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLI 310
Query: 156 FDQSGKLLVSCSA--DMSLKLWDMSTYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASRD 211
+ K ++S D +L +W S+ K + HD V A P+ + +A+ D
Sbjct: 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD 370
Query: 212 KTIKMWEVATGYCVK 226
+ +K W V G VK
Sbjct: 371 ENLKFWRVYDGDHVK 385
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK------TLR 359
+L+ G + + ++DV S + L T+ GH V ++++ ++++S G +R
Sbjct: 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVR 204
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
+ AN + + TL+ HS V L + + +G D V++W+ R
Sbjct: 205 I---ANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 307 LATGSRDKTIKLWDVGSGSLLF-------TLIGHDNWVRGVTFHPGGK-YLVSCGDDKTL 358
+A+GS D T+ +W++ G L+ TL GH V V +HP + L+S G D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 359 RVWDTANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
VWD + TL + H + S+D+ R + T DK V+V E R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 146 GHLDSVQDIAF-DQSGKLLVSCSADMSLKLWD-------MSTYQCLKTMQGHDHNVTGVA 197
GH V DIA+ + ++ S S D ++ +W+ + + + T++GH V VA
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 198 FLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTG--HREWVRQIKVSPDGTLLASCSNDH 254
+ P + + +LSA D I +W+V TG V TL H + + + S DG L+ + D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 255 TARV 258
RV
Sbjct: 199 RVRV 202
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 102 LSGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYETG-------EYERALHGHLDSVQD 153
+ GH +PV+ + + P +++AS SED T+ +W+ G E L GH V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 154 IAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQG--HDHNVTGVAFLPNSDFVLSASR 210
+A+ + + +L+S D + +WD+ T + T+ H + V + + + ++ R
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 211 DKTIKMWEVATGYCVKTLTGHREWVRQI 238
DK +++ E G V E R +
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 55/178 (30%)
Query: 186 MQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG 244
+ GH V +A+ P++D V+ S S D T+ +WE+ PDG
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI----------------------PDG 114
Query: 245 TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXX 304
L+ L +E L GH V VAW P +
Sbjct: 115 GLV-------------LPLREPVITLEGHTKRVGIVAWHPTAQN---------------- 145
Query: 305 XYLATGSRDKTIKLWDVGSGSLLFTLIG--HDNWVRGVTFHPGGKYLVSCGDDKTLRV 360
L + D I +WDVG+G+ + TL H + + V + G + + DK +RV
Sbjct: 146 -VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 307 LATGSRDKTIKLWDVGSGSLLF-------TLIGHDNWVRGVTFHPGGK-YLVSCGDDKTL 358
+A+GS D T+ +W++ G L+ TL GH V V +HP + L+S G D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 359 RVWDTANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
VWD + TL + H + S+D+ R + T DK V+V E R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 146 GHLDSVQDIAF-DQSGKLLVSCSADMSLKLWD-------MSTYQCLKTMQGHDHNVTGVA 197
GH V DIA+ + ++ S S D ++ +W+ + + + T++GH V VA
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 198 FLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTG--HREWVRQIKVSPDGTLLASCSNDH 254
+ P + + +LSA D I +W+V TG V TL H + + + S DG L+ + D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 255 TARV 258
RV
Sbjct: 199 RVRV 202
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 102 LSGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYETG-------EYERALHGHLDSVQD 153
+ GH +PV+ + + P +++AS SED T+ +W+ G E L GH V
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 154 IAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQG--HDHNVTGVAFLPNSDFVLSASR 210
+A+ + + +L+S D + +WD+ T + T+ H + V + + + ++ R
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 211 DKTIKMWEVATGYCVKTLTGHREWVRQI 238
DK +++ E G V E R +
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 55/176 (31%)
Query: 188 GHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL 246
GH V +A+ P++D V+ S S D T+ +WE+ PDG L
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI----------------------PDGGL 116
Query: 247 LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXY 306
+ L +E L GH V VAW P + +S
Sbjct: 117 V-------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC----------- 152
Query: 307 LATGSRDKTIKLWDVGSGSLLFTLIG--HDNWVRGVTFHPGGKYLVSCGDDKTLRV 360
D I +WDVG+G+ + TL H + + V + G + + DK +RV
Sbjct: 153 ------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 171 SLKLWDMSTYQCLKTMQ----GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK 226
+++LW++ + L + HD V+ V+ L + +S S+D IK+W++A +
Sbjct: 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS 163
Query: 227 TLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG 285
+ H V + SP ++ SCS D+ +W + +++ APG
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------APG 214
Query: 286 VASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG 345
S++ G + T+ L D S S + + H V G+ F P
Sbjct: 215 YLPTSLA------WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH 268
Query: 346 G-KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV 379
+L S +D +L V D++ ++ +AH FV
Sbjct: 269 SVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFV 302
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 119 SLMASCSEDATIRLWDYETGEYERAL----HGHLDSVQDIAF-DQSGKLLVSCSADMSLK 173
S+ SCSED I LWD + + G+L + +A+ Q ++ V + ++
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT--SLAWHPQQSEVFVFGDENGTVS 240
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
L D + C+ + H VTG+ F P+S F+ S S D ++ + + + ++ HR
Sbjct: 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHR 299
Query: 233 EWVRQIKVSP-DGTLLASCSNDH 254
++VR SP + +LL + DH
Sbjct: 300 DFVRDATWSPLNHSLLTTVGWDH 322
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 16/278 (5%)
Query: 130 IRLWDYE-TGE-YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ 187
+R W+ + +G+ +A H V D+ + G + + S D + K+WD+S+ Q ++ Q
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125
Query: 188 GHDHNVTGVAFL--PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT 245
HD V + ++ PN V++ S DKT+K W+ + + L + P
Sbjct: 126 -HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184
Query: 246 LLASCSNDHTARVWSLATKETKAELRGHD----HTVECVAWAPGVASESISEAAXXXXXX 301
+ + + V+ L + + E R + H CVA ++ A
Sbjct: 185 VATA---ERGLIVYQLENQPS--EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239
Query: 302 XXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW-VRGVTFHPGGKYLVSCGDDKTLRV 360
Y+ + K + + T D + V G+ FHP L + G D
Sbjct: 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299
Query: 361 WDTANKRNMKTLEAHSHFVTSLDF-HRAHPYVVTGSVD 397
WD + +KT E +++ F H + + S D
Sbjct: 300 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 190 DHNVTGVAFLPNS---DFVLSASRDKTIKMWEVA-TGYCV-KTLTGHREWVRQIKVSPDG 244
D ++ ++F P + +F+++ S ++ WEV +G + K H V + S DG
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 245 TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAW--APGVASESISEAAXXXXXXX 302
+ + + S D TA++W L++ + ++ HD V+ + W AP +
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSC-------------- 143
Query: 303 XXXYLATGSRDKTIKLWDVGSGSLLFTL 330
+ TGS DKT+K WD S + + L
Sbjct: 144 ----VMTGSWDKTLKFWDTRSSNPMMVL 167
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 306 YLATGSRDKTIKLWDV-GSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
+L GS ++ W+V SG + H V V + G + + DKT ++WD
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 364 ANKRNMKTLEAHSHFVTSLDFHRAHPY--VVTGSVDKTVKVWECR 406
++ + ++ + H V ++ + +A Y V+TGS DKT+K W+ R
Sbjct: 116 SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 149 DSVQDIAFDQS---GKLLVSCSADMSLKLWDM--STYQCLKTMQGHDHNVTGVAFLPNSD 203
DS+ ++F G L++ S ++ W++ S K Q H V V + +
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 204 FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK--VSPDGTLLASCSNDHTARVW 259
V +AS DKT KMW++++ ++ + H V+ I +P+ + + + S D T + W
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
R L ++D+ D F + S LL + +++ + T QC+K GH +
Sbjct: 94 RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 153
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
+ + F P + + +LS S+D +++W + T V GHR+ V G +
Sbjct: 154 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 213
Query: 249 SCSNDHTARVWSLATKETKAELR 271
SC DH+ ++W + +K ++
Sbjct: 214 SCGMDHSLKLWRINSKRMMNAIK 236
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 104 GHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQS 159
GH + + ++ FHP +L+ S S+D +RLW+ +T + GH D V +D
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHN 192
G+ ++SC D SLKLW +++ + + + + +D+N
Sbjct: 209 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 242
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTL---IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
L + S+D ++LW++ + +L+ GH + V + G+ ++SCG D +L++W
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 364 ANKRNMKTLE 373
+KR M ++
Sbjct: 227 NSKRMMNAIK 236
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 287 ASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-G 345
A E+ A LA I++ + + + +GH N + + FHP
Sbjct: 104 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD 163
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMKTL---EAHSHFVTSLDFHRAHPYVVTGSVDKTVKV 402
L+S D LR+W+ + E H V S D+ +++ +D ++K+
Sbjct: 164 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 223
Query: 403 W 403
W
Sbjct: 224 W 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
R L ++D+ D F + S LL + +++ + T QC+K GH +
Sbjct: 53 RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 112
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
+ + F P + + +LS S+D +++W + T V GHR+ V G +
Sbjct: 113 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 172
Query: 249 SCSNDHTARVWSLATKETKAELR 271
SC DH+ ++W + +K ++
Sbjct: 173 SCGMDHSLKLWRINSKRMMNAIK 195
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 104 GHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQS 159
GH + + ++ FHP +L+ S S+D +RLW+ +T + GH D V +D
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHN 192
G+ ++SC D SLKLW +++ + + + + +D+N
Sbjct: 168 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 201
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTL---IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
L + S+D ++LW++ + +L+ GH + V + G+ ++SCG D +L++W
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 364 ANKRNMKTLE 373
+KR M ++
Sbjct: 186 NSKRMMNAIK 195
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 331 IGHDNWVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTL---EAHSHFVTSLDFHR 386
+GH N + + FHP L+S D LR+W+ + E H V S D+
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 166
Query: 387 AHPYVVTGSVDKTVKVW 403
+++ +D ++K+W
Sbjct: 167 LGEKIMSCGMDHSLKLW 183
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 128/329 (38%), Gaps = 27/329 (8%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLL 163
H V + + P + +AS S D TI++W+ T + E+ + G Q + + + L
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
VS SA+ + + + GH+ +T ++ + + SA + I W+++TG
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 224 CVKTLTG-HREWVRQIKVSPDGTLLASCSNDHTARV----------WSLATKETKAEL-- 270
+ H + IK + G L +DH V ++A K + L
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 271 ----RGHDHTVEC----VAWAPGVASE-SISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
G C ++ G +E IS + ++A G +D + ++ +
Sbjct: 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 477
Query: 322 GSGSLL-FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSH 377
S+ I H + V F G +LV+ + + + AN + + H+
Sbjct: 478 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537
Query: 378 FVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
V + + + + TGS+D +V VW
Sbjct: 538 KVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSL-MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
L+G + V F P + S S+D T+ +++ +++ H V + ++ G
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 161 KLLVSCSADMSLKLWD------MSTYQ--CLKTMQGHDHNVTGVAFLPNSDFVLSASRDK 212
L S D ++ L++ ++ LK + H +V G+ + P+ + SAS DK
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTWSPDGTKIASASADK 261
Query: 213 TIKMWEVATGYCVKTL 228
TIK+W VAT KT+
Sbjct: 262 TIKIWNVATLKVEKTI 277
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 10/177 (5%)
Query: 97 PEKF--ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD----YETGEYER-ALH--GH 147
P KF H V V ++P SL AS D TI L++ +TG +E +L H
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238
Query: 148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVL 206
SV + + G + S SAD ++K+W+++T + KT+ G + + ++
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298
Query: 207 SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT 263
S S + I G + GH + + + S DG L S + W ++T
Sbjct: 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK 366
+ +GS D T+ +++ T H +V V ++P G S G D T+ +++ +
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 367 RNMKTLE-------AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
E AHS V L + + + S DKT+K+W
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 26/160 (16%)
Query: 221 TGYCVKTLTGHREWVRQIKVSPDGTL-LASCSNDHTARVWSLATKETKAELRGHDHTVEC 279
TG LTG + + P + S S+D+T ++ + K+ H V
Sbjct: 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195
Query: 280 VAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL-------IG 332
V + P A+ D TI L++ G+ +
Sbjct: 196 VRYNP------------------DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL 372
H V G+T+ P G + S DKT+++W+ A + KT+
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 56/240 (23%)
Query: 148 LDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGHDH----------NVTGV 196
+DS + +A S + L ++ SAD D++ C K + + H N + V
Sbjct: 400 VDSSKAVANKLSSQPLGLAVSAD-----GDIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454
Query: 197 AFLPNSDFVLSASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPDGTLLASCSNDH 254
A + FV +D + +++++ VKT+ H + + S +G L +
Sbjct: 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSR 513
Query: 255 TARVWSLATKETKAELRG---HDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGS 311
+S+A A H V CV+W+P LATGS
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSP------------------DNVRLATGS 555
Query: 312 RDKTIKLWDVG---------SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
D ++ +W++ G+ + + W+ T +VS G D ++ W+
Sbjct: 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-------IVSAGQDSNIKFWN 608
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
R L ++D+ D F + S LL + +++ + T QC+K GH +
Sbjct: 58 RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 117
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
+ + F P + + +LS S+D +++W + T V GHR+ V G +
Sbjct: 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177
Query: 249 SCSNDHTARVWSLATKETKAELR 271
SC DH+ ++W + +K ++
Sbjct: 178 SCGMDHSLKLWRINSKRMMNAIK 200
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 104 GHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQS 159
GH + + ++ FHP +L+ S S+D +RLW+ +T + GH D V +D
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHN 192
G+ ++SC D SLKLW +++ + + + + +D+N
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 206
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTL---IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
L + S+D ++LW++ + +L+ GH + V + G+ ++SCG D +L++W
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 364 ANKRNMKTLE 373
+KR M ++
Sbjct: 191 NSKRMMNAIK 200
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 287 ASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-G 345
A E+ A LA I++ + + + +GH N + + FHP
Sbjct: 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD 127
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMKTL---EAHSHFVTSLDFHRAHPYVVTGSVDKTVKV 402
L+S D LR+W+ + E H V S D+ +++ +D ++K+
Sbjct: 128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 187
Query: 403 W 403
W
Sbjct: 188 W 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
R L ++D+ D F + S LL + +++ + T QC+K GH +
Sbjct: 57 RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 116
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
+ + F P + + +LS S+D +++W + T V GHR+ V G +
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 249 SCSNDHTARVWSLATKETKAELR 271
SC DH+ ++W + +K ++
Sbjct: 177 SCGMDHSLKLWRINSKRMMNAIK 199
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 104 GHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQS 159
GH + + ++ FHP +L+ S S+D +RLW+ +T + GH D V +D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHN 192
G+ ++SC D SLKLW +++ + + + + +D+N
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 205
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTL---IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
L + S+D ++LW++ + +L+ GH + V + G+ ++SCG D +L++W
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 364 ANKRNMKTLE 373
+KR M ++
Sbjct: 190 NSKRMMNAIK 199
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 331 IGHDNWVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTL---EAHSHFVTSLDFHR 386
+GH N + + FHP L+S D LR+W+ + E H V S D+
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 170
Query: 387 AHPYVVTGSVDKTVKVW 403
+++ +D ++K+W
Sbjct: 171 LGEKIMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
R L ++D+ D F + S LL + +++ + T QC+K GH +
Sbjct: 57 RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 116
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
+ + F P + + +LS S+D +++W + T V GHR+ V G +
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 249 SCSNDHTARVWSLATKETKAELR 271
SC DH+ ++W + +K ++
Sbjct: 177 SCGMDHSLKLWRINSKRMMNAIK 199
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 104 GHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQS 159
GH + + ++ FHP +L+ S S+D +RLW+ +T + GH D V +D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 160 GKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHN 192
G+ ++SC D SLKLW +++ + + + + +D+N
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 205
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTL---IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT 363
L + S+D ++LW++ + +L+ GH + V + G+ ++SCG D +L++W
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 364 ANKRNMKTLE 373
+KR M ++
Sbjct: 190 NSKRMMNAIK 199
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 287 ASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-G 345
A E+ A LA I++ + + + +GH N + + FHP
Sbjct: 67 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD 126
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMKTL---EAHSHFVTSLDFHRAHPYVVTGSVDKTVKV 402
L+S D LR+W+ + E H V S D+ +++ +D ++K+
Sbjct: 127 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 186
Query: 403 W 403
W
Sbjct: 187 W 187
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 26/226 (11%)
Query: 191 HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC 250
+ VT +A+ + + +++ + +++W TG + L HR + +K + DGT + S
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 251 SNDHTARVWSLAT---------KETK-AELRGHDHTVECVAWAPGVASESISEAAXXXXX 300
++ +W++ + KET + + +H+ + + GV E + +
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG---SLGVDVEWVDD------- 217
Query: 301 XXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV 360
++ G + I ++ + + LIGH + + F+ K L+S DD TLR+
Sbjct: 218 ---DKFVIPGPK-GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
Query: 361 WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
W N + HS + S + V++ S+D +V++W +
Sbjct: 274 WHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRLWSLK 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
L GH P+ + F+ L+ S S+D T+R+W G + +GH S+ ++ K
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 162 LLVSCSADMSLKLWDMSTYQCL 183
++SCS D S++LW + L
Sbjct: 303 -VISCSMDGSVRLWSLKQNTLL 323
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 126 EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK- 184
E+ +RLW+ +TG L+ H + + +++ G ++S + LW++ + ++
Sbjct: 128 ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186
Query: 185 ---------TMQGHDHNVTG-----VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG 230
++ +H+ G V ++ + FV+ + I ++++ L G
Sbjct: 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKLIG 245
Query: 231 HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAW 282
H + ++ + LL S S+D T R+W ++ GH ++ +W
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD 203
L GH + + F+ + KLL+S S D +L++W GH ++ +++ + D
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-D 301
Query: 204 FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT 263
V+S S D ++++W + + + ++S DG A D V+ L
Sbjct: 302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361
Query: 264 KETKA 268
+K+
Sbjct: 362 LNSKS 366
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWD 176
+ + D I +D ++GE+ + + + VQ F S + + AD ++++WD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 177 MSTYQCLKT----MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
++T +C++ Q + GV N ++S S D T+ +E+ +KT++GH
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 233 EWVRQIKVSP------DGTLL----ASCSNDHTARVWSL 261
+ + + V+P DG ++ +S DH+ + SL
Sbjct: 340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 64/331 (19%), Positives = 127/331 (38%), Gaps = 42/331 (12%)
Query: 95 RAPEKFALSGHRSPVIKVI-FHPVFSLMASCSEDATIRL------WDYETGEYERALHGH 147
+ P +GH S V+ + F P+ CS D + ++ +D E+ E +
Sbjct: 52 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111
Query: 148 LD----SVQDIAFDQSGKLL--VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
+ DI++D G+ L V D + L + GH + +
Sbjct: 112 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 171
Query: 202 SDF-VLSASRDKTIKMWEVAT-GYCVKTLTGHRE--WVRQIKVSPD-GTLLASCSNDHTA 256
++ D ++ ++ + T H++ +VR ++ SPD G + + +D
Sbjct: 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231
Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTI 316
+ + E + V+ G+ + S ++ AT D TI
Sbjct: 232 SCFDGKSGEFLKYIEDDQEPVQG-----GIFALSWLDSQK----------FATVGADATI 276
Query: 317 KLWDVGSGSLL--FTLIGHD--NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL 372
++WDV + + +TL N GV G+ ++S D TL ++ + +KT+
Sbjct: 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTI 335
Query: 373 EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
H+ +T+L + +++GS D + W
Sbjct: 336 SGHNKGITALTVNP----LISGSYDGRIMEW 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWD 176
+ + D I +D ++GE+ + + + VQ F S + + AD ++++WD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 177 MSTYQCLKT----MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
++T +C++ Q + GV N ++S S D T+ +E+ +KT++GH
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 233 EWVRQIKVSP 242
+ + + V+P
Sbjct: 340 KGITALTVNP 349
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 121 MASCSEDATIRLWDYETGEYER--ALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDM 177
A+ DATIR+WD T + + L Q + +G ++S S D +L +++
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ LKT+ GH+ +T + P ++S S D I W
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 307 LATGSRDKTIKLWDVGSGSLL--FTLIGHD--NWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
AT D TI++WDV + + +TL N GV G+ ++S D TL ++
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 325
Query: 363 TANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
+ +KT+ H+ +T+L + +++GS D + W
Sbjct: 326 LGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLW----DMSTYQCLKTMQGHDHNVTGV--AFL 199
GH D V D+ +D G+ + +CS+D +K++ D S ++ + + HD ++ + A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 200 PNSDFVLSASRDKTIKMWEVATGY--C-------VKTLTGHREWVRQIKVSPD--GTLLA 248
+ SAS DKT+K+WE C + TL + + +K +P G LA
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 249 SCSNDHTARV-----------WSLATKETKAELRGHDHTVE--CVAWAP 284
ND R+ W+L ++ + +H C++W P
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCP 177
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW----DTANKRNMKTLEAHSHFVTSLDFHRA 387
GHD+ V V + G+++ +C D+ ++V+ DT+N + AH + ++D+ A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--A 66
Query: 388 HP----YVVTGSVDKTVKVWE 404
P + + S DKTVK+WE
Sbjct: 67 SPEYGRIIASASYDKTVKLWE 87
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL----RGHDHTVECVAWAP 284
+GH + V + G +A+CS+D +V+ L + EL R HD ++ + WA
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 285 GVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVG------SG---SLLFTLIGHDN 335
+A+ S DKT+KLW+ SG + L TL
Sbjct: 67 ---------------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG 111
Query: 336 WVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNMKT 371
+ V F P G L G+D LR++D ++++
Sbjct: 112 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLW----DMSTYQCLKTMQGHDHNVTGV--AFL 199
GH D V D+ +D G+ + +CS+D +K++ D S ++ + + HD ++ + A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 200 PNSDFVLSASRDKTIKMWEVATGY--C-------VKTLTGHREWVRQIKVSPD--GTLLA 248
+ SAS DKT+K+WE C + TL + + +K +P G LA
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 249 SCSNDHTARV-----------WSLATKETKAELRGHDHTVE--CVAWAP 284
ND R+ W+L ++ + +H C++W P
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW----DTANKRNMKTLEAHSHFVTSLDFHRA 387
GHD+ V V + G+++ +C D+ ++V+ DT+N + AH + ++D+ A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--A 66
Query: 388 HP----YVVTGSVDKTVKVWE 404
P + + S DKTVK+WE
Sbjct: 67 SPEYGRIIASASYDKTVKLWE 87
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL----RGHDHTVECVAWAP 284
+GH + V + G +A+CS+D +V+ L + EL R HD ++ + WA
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 285 GVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVG------SG---SLLFTLIGHDN 335
+A+ S DKT+KLW+ SG + L TL
Sbjct: 67 ---------------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG 111
Query: 336 WVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNMKT 371
+ V F P G L G+D LR++D ++++
Sbjct: 112 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLW----DMSTYQCLKTMQGHDHNVTGV--AFL 199
GH D V D+ +D G+ + +CS+D +K++ D S ++ + + HD ++ + A
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 200 PNSDFVLSASRDKTIKMWEVATGY--C-------VKTLTGHREWVRQIKVSPD--GTLLA 248
+ SAS DKT+K+WE C + TL + + +K +P G LA
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 126
Query: 249 SCSNDHTARV-----------WSLATKETKAELRGHDHTVE--CVAWAP 284
ND R+ W+L ++ + +H C++W P
Sbjct: 127 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 175
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW----DTANKRNMKTLEAHSHFVTSLDFHRA 387
GHD+ V V + G+++ +C D+ ++V+ DT+N + AH + ++D+ A
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--A 64
Query: 388 HP----YVVTGSVDKTVKVWE 404
P + + S DKTVK+WE
Sbjct: 65 SPEYGRIIASASYDKTVKLWE 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL----RGHDHTVECVAWAP 284
+GH + V + G +A+CS+D +V+ L + EL R HD ++ + WA
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 64
Query: 285 GVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVG------SG---SLLFTLIGHDN 335
+A+ S DKT+KLW+ SG + L TL
Sbjct: 65 ---------------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG 109
Query: 336 WVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNMKT 371
+ V F P G L G+D LR++D ++++
Sbjct: 110 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 147
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTLI-GHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTA 364
+ATG +D + +WDV G++ +L+ H+ + V FHP ++L +C +D +L WD +
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 100 FALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFD 157
+L+G R P+ V HP ++A+ +D + +WD G +L H + ++ F
Sbjct: 230 LSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFH 289
Query: 158 QSG-KLLVSCSADMSLKLWDMST 179
S + L +CS D SL WD ST
Sbjct: 290 PSNPEHLFTCSEDGSLWHWDAST 312
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 306 YLATGSRDKTIKLWDV----GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
+LAT S D+T+K+WD+ G S L++L H + V F P G L++ +RV+
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 362 DTANKRNMKTLEAHSH 377
+ L H H
Sbjct: 324 SASQWDCPLGLIPHPH 339
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 29/245 (11%)
Query: 125 SEDATIRLWDYETGEYERALHGHLDSVQ----DIAFDQSGKLLVSCSADMSLKLWDMSTY 180
S + T RL D++ G R D++ + S +++V+ ++ L +M
Sbjct: 184 SMEGTTRLQDFK-GNILRVFASS-DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK 241
Query: 181 QCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLT---GHREWVR 236
+ L ++ H VT VA P D F+ +AS D+T+K+W++ + HR V
Sbjct: 242 E-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300
Query: 237 QIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH------TVECVAWAPGVASES 290
SPDG L + RV+S + + L H H T AW P
Sbjct: 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360
Query: 291 ISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT----FHPGG 346
+ L +TI ++D SG ++ L +D G++ F+P G
Sbjct: 361 VGRYPDPNFKSCTPYEL------RTIDVFDGNSGKMMCQL--YDPESSGISSLNEFNPMG 412
Query: 347 KYLVS 351
L S
Sbjct: 413 DTLAS 417
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 306 YLATGSRDKTIKLWDV----GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
+LAT S D+T+K+WD+ G S L++L H + V F P G L++ +RV+
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 362 DTANKRNMKTLEAHSH 377
+ L H H
Sbjct: 324 SASQWDCPLGLIPHPH 339
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 32/265 (12%)
Query: 125 SEDATIRLWDYETGEYERALHGHLDSVQ----DIAFDQSGKLLVSCSADMSLKLWDMSTY 180
S + T RL D++ G R D++ + S +++V+ ++ L +M
Sbjct: 184 SMEGTTRLQDFK-GNILRVFASS-DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK 241
Query: 181 QCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEV----ATGYCVKTLTGHREWV 235
+ L ++ H VT VA P D F+ +AS D+T+K+W++ + +L HR V
Sbjct: 242 E-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPV 299
Query: 236 RQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH------TVECVAWAPGVASE 289
SPDG L + RV+S + + L H H T AW P
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359
Query: 290 SISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT----FHPG 345
+ L +TI ++D SG ++ L +D G++ F+P
Sbjct: 360 VVGRYPDPNFKSCTPYEL------RTIDVFDGNSGKMMCQL--YDPESSGISSLNEFNPM 411
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMK 370
G L S L +W R K
Sbjct: 412 GDTLASAMGYHIL-IWSQQEARTRK 435
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
H +WV ++F+ G+ L S G D LR WD K + TL H
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDAT---IRLWDYETGEYERAL------------- 144
++ + + + V F P SL+A + + I L++ E GE +L
Sbjct: 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH 189
H V ++F+ SG+ L S D L+ WD+ T + + T+ H
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 307 LATGSRDKTIKLWDVGSGSLLF------TLIGHDNWVRGVTFHPGGKYLVSCGDDKT--- 357
+ATG + T+++ ++ + L+ ++I + N +R V F P G L D +
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 358 LRVWDTANKRNMKTLE-------------AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +++T + +L AHS +V SL F+ + + + D ++ W+
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Query: 405 CR 406
+
Sbjct: 320 VK 321
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT---IKMWEVATGYCVKTLT---- 229
+ ++ +M + +++ V F P + A + I ++E G + +L+
Sbjct: 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279
Query: 230 ---------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVE 278
H WV + + G L S D R W + TKE L H +E
Sbjct: 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 337
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV---QDI-AFDQS 159
H S V+ + F+ + S D +R WD +T E L+ H D + +DI A D+
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 160 GKLL 163
G L
Sbjct: 349 GDSL 352
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
H +WV ++F+ G+ L S G D LR WD K + TL H
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDAT---IRLWDYETGEYERAL------------- 144
++ + + + V F P SL+A + + I L++ E GE +L
Sbjct: 238 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 297
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH 189
H V ++F+ SG+ L S D L+ WD+ T + + T+ H
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 307 LATGSRDKTIKLWDVGSGSLLF------TLIGHDNWVRGVTFHPGGKYLVSCGDDKT--- 357
+ATG + T+++ ++ + L+ ++I + N +R V F P G L D +
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 358 LRVWDTANKRNMKTLE-------------AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +++T + +L AHS +V SL F+ + + + D ++ W+
Sbjct: 270 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
Query: 405 CR 406
+
Sbjct: 330 VK 331
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT---IKMWEVATGYCVKTLT---- 229
+ ++ +M + +++ V F P + A + I ++E G + +L+
Sbjct: 230 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 289
Query: 230 ---------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVE 278
H WV + + G L S D R W + TKE L H +E
Sbjct: 290 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 347
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV---QDI-AFDQSG 160
H S V+ + F+ + S D +R WD +T E L+ H D + +DI A D+ G
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 359
Query: 161 KLL 163
L
Sbjct: 360 DSL 362
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 306 YLATGSRDKTIKLWDV----GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
+LAT S D+T+K+WD+ G S L++L H + V F P G L++ +RV+
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Query: 362 DTANKRNMKTLEAHSH 377
+ L H H
Sbjct: 325 SASQWDCPLGLIPHPH 340
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 32/265 (12%)
Query: 125 SEDATIRLWDYETGEYERALHGHLDSVQ----DIAFDQSGKLLVSCSADMSLKLWDMSTY 180
S + T RL D++ G R D++ + S +++V+ ++ L +M
Sbjct: 185 SMEGTTRLQDFK-GNILRVFASS-DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK 242
Query: 181 QCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEV----ATGYCVKTLTGHREWV 235
+ L ++ H VT VA P D F+ +AS D+T+K+W++ + +L HR V
Sbjct: 243 E-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPV 300
Query: 236 RQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH------TVECVAWAPGVASE 289
SPDG L + RV+S + + L H H T AW P
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 360
Query: 290 SISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT----FHPG 345
+ L +TI ++D SG ++ L +D G++ F+P
Sbjct: 361 VVGRYPDPNFKSCTPYEL------RTIDVFDGNSGKMMCQL--YDPESSGISSLNEFNPM 412
Query: 346 GKYLVSCGDDKTLRVWDTANKRNMK 370
G L S L +W R K
Sbjct: 413 GDTLASAMGYHIL-IWSQEEARTRK 436
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 120/309 (38%), Gaps = 43/309 (13%)
Query: 122 ASCSEDATIRLWDYETGEYERALHG-HLDS-VQDIAFDQSGKLLVSCSADMSLKLWDMS- 178
A+ S D+++ LW + E+ + +DS D+ + + K++ + SL+L+ +
Sbjct: 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNE 98
Query: 179 ---TYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMW------EVATGYCVKTL 228
+ H +V V F D VL S + I +W E + Y T
Sbjct: 99 ANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158
Query: 229 TGHREWVRQ-IKVSPDGTL---LASCSNDHTARVWSLATKETKAELR------GHDHTVE 278
V + I ++ + +L AS + + A +W L K+ L G +
Sbjct: 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218
Query: 279 CVAWAPGVASESISEAAXXXXXXXXXXYLATGS-RDKTIKLWDV-GSGSLLFTL-IGHDN 335
V W P ++ + ATGS D +I +WD+ + + L TL GH
Sbjct: 219 VVEWHPKNSTRVAT---------------ATGSDNDPSILIWDLRNANTPLQTLNQGHQK 263
Query: 336 WVRGVTF-HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVT- 393
+ + + H L+S G D T+ +W+ + + A ++ F P +
Sbjct: 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323
Query: 394 GSVDKTVKV 402
S D ++V
Sbjct: 324 ASFDNKIEV 332
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 100/279 (35%), Gaps = 49/279 (17%)
Query: 120 LMASCSEDATIRLWDYETGEYERALH------GHLDSVQDIAFD-QSGKLLVSCSADMSL 172
++A ++ ++ L Y T E A++ H SV+ + F+ + +L S + +
Sbjct: 81 IIAGALDNGSLEL--YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138
Query: 173 KLWDM-------STYQCL---KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG 222
+WDM S Y L ++M D ++ + SA +W++
Sbjct: 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198
Query: 223 YCVKTLT------GHREWVRQIKVSP-DGTLLASCS---NDHTARVWSLATKETKAEL-- 270
V L+ G ++ + ++ P + T +A+ + ND + +W L T +
Sbjct: 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN 258
Query: 271 RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL 330
+GH + + W L + RD T+ LW+ S L
Sbjct: 259 QGHQKGILSLDWC-----------------HQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
Query: 331 IGHDNWVRGVTFHPGGKYLVSCGD-DKTLRVWDTANKRN 368
NW F P L +C D + V N N
Sbjct: 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 157 DQSGKLLVSCSADMSL---KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
D G+L V S D S+ KL D+S + K Q H +T V P+S +V S S T
Sbjct: 278 DXKGELAVLASNDNSIALVKLKDLSXSKIFK--QAHSFAITEVTISPDSTYVASVSAANT 335
Query: 214 IKMWEVATGYC 224
I + ++ Y
Sbjct: 336 IHIIKLPLNYA 346
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL--RGHDHTVECVAW 282
V L H V I +PD + +C D A VW+L + K L + CV W
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 283 AP 284
AP
Sbjct: 105 AP 106
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL--RGHDHTVECVAW 282
V L H V + +PD + +C D A VW+L + K L + CV W
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 283 AP 284
AP
Sbjct: 105 AP 106
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
H+ V GV + P +V+CG D+ VW
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 98 EKFALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYET--------------GEYER 142
E F H++ V F+P LMA+ S DAT++LWD
Sbjct: 195 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA 254
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMS----LKLWDMSTYQCLKTMQGHDH---NVTG 195
A DS + + DQ ++ V S D S + + +Q L ++ H ++
Sbjct: 255 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 314
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE--WVRQIKVSPDGTLLAS 249
P+ +L+ R TI +++ +G V L + K SP G +LAS
Sbjct: 315 AGRYPDDQLLLNDKR--TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 368
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Query: 98 EKFALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDY----ETGEY----------ER 142
E F H++ V F+P LMA+ S DAT++LWD + Y
Sbjct: 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA 255
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMS----LKLWDMSTYQCLKTMQGHDH---NVTG 195
A DS + + DQ ++ V S D S + + +Q L ++ H ++
Sbjct: 256 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE--WVRQIKVSPDGTLLAS 249
P+ +L+ R TI +++ +G V L + K SP G +LAS
Sbjct: 316 AGRYPDDQLLLNDKR--TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 155 AFDQSGKLLVSCSADMSLKLW--DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK 212
AF+ V+ +A ++L+ D + ++ +T HD VT V + P S+ +++ S+D+
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77
Query: 213 TIKMWE 218
++E
Sbjct: 78 NAYVYE 83
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ 187
+++ + F + +LV S D LK+ D+ST QC++T++
Sbjct: 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ 187
+++ + F + +LV S D LK+ D+ST QC++T++
Sbjct: 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ 187
+++ + F + +LV S D LK+ D+ST QC++T++
Sbjct: 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDAT-IRLWDYETGEYERALHGHLD--SVQDIAFDQ 158
+ H +P+ V + ++A+CS+D T IR++ E G R LD V D+ +
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250
Query: 159 SGKLLVSCSADMSLKLWDMSTYQ 181
G L S +L ++++ Q
Sbjct: 251 DGSKLAVVSDKWTLHVFEIFNDQ 273
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDAT-IRLWDYETGEYERALHGHLD--SVQDIAFDQ 158
+ H +PV V + ++A+CS+D T IR++ + G R LD S+ D+ +
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSP 234
Query: 159 SGKLLVSCSADMSLKLWDM 177
G L S +L ++++
Sbjct: 235 DGSKLAVVSDKWTLHVFEV 253
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 196 VAFLPNSDFVLSASR-DKTIKMWEVATGY----CVKTLTGHRE------WVRQIKVSPDG 244
+ F PN + + + ++ +WE+ + CV+TL E W I ++PDG
Sbjct: 183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242
Query: 245 TLLASCSNDHTARVWSL 261
L +C D TA + ++
Sbjct: 243 RHLYAC--DRTASLITV 257
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 389 PYVVTGSVDKTVKVWECR 406
P +VTGS D TVKVW+ R
Sbjct: 130 PEIVTGSRDGTVKVWDPR 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,222,348
Number of Sequences: 62578
Number of extensions: 466747
Number of successful extensions: 2948
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 493
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)