RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy226
(406 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 315 bits (809), Expect = e-106
Identities = 126/307 (41%), Positives = 174/307 (56%), Gaps = 18/307 (5%)
Query: 98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD 157
+ L GH V V F P L+A+ S D TI++WD ETGE R L GH V+D+A
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
G L S S+D +++LWD+ T +C++T+ GH V+ VAF P+ + S+SRDKTIK+W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
+V TG C+ TL GH +WV + SPDGT +AS S D T ++W L T + A L GH V
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
Query: 278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
VA++P G L + S D TIKLWD+ +G L TL GH+N V
Sbjct: 181 NSVAFSP------------------DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222
Query: 338 RGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD 397
V F P G L S +D T+RVWD ++TL H++ VTSL + + +GS D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282
Query: 398 KTVKVWE 404
T+++W+
Sbjct: 283 GTIRIWD 289
Score = 212 bits (541), Expect = 3e-66
Identities = 85/225 (37%), Positives = 121/225 (53%), Gaps = 18/225 (8%)
Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
+T++GH VT VAF P+ + + S D TIK+W++ TG ++TL GH VR + S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 242 PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQ 301
DGT LAS S+D T R+W L T E L GH V VA++P
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD---------------- 104
Query: 302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
G L++ SRDKTIK+WDV +G L TL GH +WV V F P G ++ S D T+++W
Sbjct: 105 --GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
D + + TL H+ V S+ F +++ S D T+K+W+
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
Score = 179 bits (456), Expect = 1e-53
Identities = 72/168 (42%), Positives = 100/168 (59%)
Query: 93 IPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQ 152
+ L GH V V F P + +AS S+D TI+LWD TG+ L GH V
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 153 DIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK 212
+AF G+ L+S S+D ++KLWD+ST +CL T++GH++ V VAF P+ + S S D
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
TI++W++ TG CV+TL+GH V + SPDG LAS S D T R+W
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 183 bits (465), Expect = 3e-53
Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 25/311 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSE-DATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
L GH V + F P L+AS S D TI+LWD TG+ L GH D V +AF G
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 161 K-LLVSCSADMSLKLWDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
L+ S S+D +++LWD+ST + L+ T+ GH +V +F P+ + S S D TI++W+
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWD 269
Query: 219 VATGY-CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDH 275
+ + ++TL+GH V + SPDG LLAS S+D T R+W L T + + L GH+
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Query: 276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN 335
V ++++P G ++ GS D TI+LWD+ +G L TL GH N
Sbjct: 330 PVSSLSFSPD-----------------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372
Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS 395
V V+F P G+ + S D T+R+WD + ++ L+ H+ VTSLDF + +GS
Sbjct: 373 -VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431
Query: 396 VDKTVKVWECR 406
D T+++W+ +
Sbjct: 432 SDNTIRLWDLK 442
Score = 178 bits (451), Expect = 3e-51
Identities = 127/365 (34%), Positives = 186/365 (50%), Gaps = 32/365 (8%)
Query: 55 SVIRLQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIF 114
+++ + L S + G A S + L GH + + F
Sbjct: 14 KLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF 73
Query: 115 HPVFSLMASCSEDATIRLWDYETGEYE-RALHG-HLDSVQDIAF---DQSGKLLVSCSAD 169
P L+ S S D TI+LWD + GE ++L G H SV +A D + LL S S D
Sbjct: 74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133
Query: 170 MSLKLWDMST-YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKT 227
++KLWD+ST + ++T++GH +VT +AF P+ + S S D TIK+W++ TG + T
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 228 LTGHREWVRQIKVSPDGT-LLASCSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAPG 285
L GH + V + SPDG L+AS S+D T R+W L+T K ++ L GH +V +++P
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP- 251
Query: 286 VASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV-GSGSLLFTLIGHDNWVRGVTFHP 344
G LA+GS D TI+LWD+ S SLL TL GH + V V F P
Sbjct: 252 -----------------DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 345 GGKYLVSCGDDKTLRVWDTANKR--NMKTLEAHSHFVTSLDFHRAHPYVVTG-SVDKTVK 401
GK L S D T+R+WD + + TL+ H V+SL F +V+G S D T++
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354
Query: 402 VWECR 406
+W+ R
Sbjct: 355 LWDLR 359
Score = 165 bits (418), Expect = 2e-46
Identities = 105/272 (38%), Positives = 145/272 (53%), Gaps = 26/272 (9%)
Query: 102 LSGHRSPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYER-ALHGHLDSVQDIAFDQS 159
L+GH PV + F P L+ AS S D TIRLWD TG+ R L GH DSV +F
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD 252
Query: 160 GKLLVSCSADMSLKLWDM-STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
G LL S S+D +++LWD+ S+ L+T+ GH +V VAF P+ + S S D T+++W+
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312
Query: 219 VATG--YCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDHTARVWSLATKETKAELRGHDH 275
+ TG TL GH V + SPDG+LL S+D T R+W L T + L GH
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS- 371
Query: 276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN 335
V V+++P G +++GS D T++LWD+ +GSLL L GH +
Sbjct: 372 NVLSVSFSPD------------------GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413
Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR 367
V + F P GK L S D T+R+WD
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445
Score = 124 bits (310), Expect = 2e-31
Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 32/293 (10%)
Query: 123 SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC 182
+ + + E + S+ + +SG LL++ +D + L D+S+
Sbjct: 2 VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL-- 59
Query: 183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTG-HREWVRQIKV 240
++GH+ ++T +AF P+ + +LS S D TIK+W++ G +K+L G H V ++ +
Sbjct: 60 --LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117
Query: 241 -SPDGTLLASC--SNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAG 296
SPDG + S D T ++W L+T + L GH +V +A++P
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP------------ 165
Query: 297 RPPGQGGGPYLATGSR-DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-GGKYLVSCGD 354
G LA+GS D TIKLWD+ +G L TL GH + V + F P GG + S
Sbjct: 166 ------DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219
Query: 355 DKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
D T+R+WD + K TL HS V S F + +GS D T+++W+ R
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLR 271
Score = 62.8 bits (151), Expect = 1e-10
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 92 WIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
W R + S V+ V F P +++S S D T+RLWD TG R L GH V
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415
Query: 152 QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD 211
+ F GK L S S+D +++LWD+ T V+F P+ + S S D
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLK------------SVSFSPDGKVLASKSSD 463
Query: 212 KTI 214
++
Sbjct: 464 LSV 466
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 55.8 bits (135), Expect = 1e-10
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 323 SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
SG LL TL GH V V F P GKYL S DD T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 53.5 bits (129), Expect = 8e-10
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
+G +KTL GH V + SPDG LAS S+D T ++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 51.2 bits (123), Expect = 5e-09
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
+ + LKT++GH VT VAF P+ ++ S S D TIK+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 48.1 bits (115), Expect = 7e-08
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 137 TGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD 176
+GE + L GH V +AF GK L S S D ++KLWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 45.4 bits (108), Expect = 6e-07
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 365 NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+ +KTL+ H+ VTS+ F Y+ +GS D T+K+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 43.1 bits (102), Expect = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD 134
L GH PV V F P +AS S+D TI+LWD
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.9 bits (99), Expect = 9e-06
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 18/58 (31%)
Query: 263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD 320
+ E L+GH V VA++P G YLA+GS D TIKLWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD------------------GKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 55.4 bits (134), Expect = 2e-10
Identities = 21/39 (53%), Positives = 22/39 (56%)
Query: 324 GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
G LL TL GH V V F P G L S DD T+RVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 52.4 bits (126), Expect = 2e-09
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
G ++TL GH V + SPDG LLAS S+D T RVW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 48.9 bits (117), Expect = 3e-08
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
+ L+T++GH VT VAF P+ + + S S D T+++W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 47.0 bits (112), Expect = 1e-07
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 138 GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD 176
G+ R L GH V +AF G LL S S D ++++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 46.2 bits (110), Expect = 3e-07
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 369 MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
++TL+ H+ VTS+ F + +GS D TV+VW
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 43.1 bits (102), Expect = 4e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD 134
L GH PV V F P +L+AS S+D T+R+WD
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 40.8 bits (96), Expect = 2e-05
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 18/57 (31%)
Query: 264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD 320
+ L+GH V VA++P G LA+GS D T+++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD------------------GNLLASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 60.5 bits (146), Expect = 7e-10
Identities = 71/277 (25%), Positives = 116/277 (41%), Gaps = 57/277 (20%)
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDF-------- 204
I FD+ G+ + + +K+ ++C ++ G D + V S
Sbjct: 489 IGFDRDGEFFATAGVNKKIKI-----FECESIIKDGRDIHYPVVELASRSKLSGICWNSY 543
Query: 205 ----VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVW 259
V S++ + +++W+VA V + H + V I S D TLLAS S+D + ++W
Sbjct: 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603
Query: 260 ------SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD 313
S+ T +TKA + CV + SES G LA GS D
Sbjct: 604 SINQGVSIGTIKTKA-------NICCVQF----PSES-------------GRSLAFGSAD 639
Query: 314 KTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA------NK 366
+ +D+ + L L T+IGH V V F LVS D TL++WD + N+
Sbjct: 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISGINE 698
Query: 367 RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
+ + H++ + + Y+ TGS V V+
Sbjct: 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735
Score = 43.9 bits (103), Expect = 1e-04
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ----SGKLLVSCSADMSLKL 174
+L+AS S+D +++LW G G + + +I Q SG+ L SAD +
Sbjct: 589 TLLASGSDDGSVKLWSINQG----VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY 644
Query: 175 WDMSTYQC-LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA 220
+D+ + L TM GH V+ V F+ +S V S+S D T+K+W+++
Sbjct: 645 YDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDLS 690
Score = 42.8 bits (100), Expect = 3e-04
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEVAT--------GYCVKTLTGHRE-----WVRQIK 239
V + F + +F +A +K IK++E + Y V L + W IK
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545
Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP 299
+ +AS + + +VW +A + E++ H+ V W SI ++ P
Sbjct: 546 -----SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRV----W-------SIDYSSADPT 589
Query: 300 GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTF-HPGGKYLVSCGDDKTL 358
LA+GS D ++KLW + G + T+ N + V F G+ L D +
Sbjct: 590 ------LLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKV 642
Query: 359 RVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
+D N K + T+ HS V+ + F + +V+ S D T+K+W+
Sbjct: 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST-LVSSSTDNTLKLWD 688
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 51.4 bits (123), Expect = 4e-07
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 153 DIAFD--QSGKLLVSCSADMSLKLWDM-------STYQCLKTMQGHDHNVTGVAFLPNSD 203
D+AF+ KL + S D ++ W + + + +QGH V V+F P++
Sbjct: 80 DVAFNPFDPQKLFTA-SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM 138
Query: 204 FVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
VL SA D + +W+V G V+ + H + + ++ + DG+LL + S D +
Sbjct: 139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194
Score = 50.7 bits (121), Expect = 8e-07
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 307 LATGSRDKTIKLWDVGSGSL-------LFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTL 358
L T S D TI W + L + L GH V V+FHP L S G D +
Sbjct: 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150
Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
VWD + ++ ++ HS +TSL+++ + T S DK + + + R
Sbjct: 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198
Score = 48.7 bits (116), Expect = 4e-06
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 96 APEKFALSGHRSPVIKVIFHPVFSL-MASCSEDATIRLWDYETGEYERA-------LHGH 147
A L G P+I V F+P + + SED TI W + L GH
Sbjct: 65 ASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH 124
Query: 148 LDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL 206
V ++F S +L S ADM + +WD+ + ++ ++ H +T + + + +
Sbjct: 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLC 184
Query: 207 SASRDKTIKMWEVATGYCVKTLTGH 231
+ S+DK + + + G V ++ H
Sbjct: 185 TTSKDKKLNIIDPRDGTIVSSVEAH 209
Score = 39.5 bits (92), Expect = 0.003
Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 25/157 (15%)
Query: 228 LTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKA-------ELRGHDHTVEC 279
L G + + +P D L + S D T W + + L+GH V
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130
Query: 280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG 339
V++ P + LA+ D + +WDV G + + H + +
Sbjct: 131 VSFHPSAMN-----------------VLASAGADMVVNVWDVERGKAVEVIKCHSDQITS 173
Query: 340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
+ ++ G L + DK L + D + + ++EAH+
Sbjct: 174 LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 51.5 bits (123), Expect = 4e-07
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 95 RAPEKFALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDY--------ETGEYERALH 145
R P L GH S ++ + F+P FS ++AS SED TIR+W+ E + + L
Sbjct: 63 RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122
Query: 146 GHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDM 177
GH + I ++ ++ S D + +WD+
Sbjct: 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
Score = 34.9 bits (80), Expect = 0.085
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 225 VKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSL-----ATKETKAE---LRGHDH 275
V L GH + ++ +P +LAS S D T RVW + + KE K L+GH
Sbjct: 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126
Query: 276 TVECVAWAP 284
+ + W P
Sbjct: 127 KISIIDWNP 135
Score = 31.1 bits (70), Expect = 1.4
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 307 LATGSRDKTIKLWDVGSGSL--------LFTLIGHDNWVRGVTFHPGGKY-LVSCGDDKT 357
LA+GS D TI++W++ L GH + + ++P Y + S G D
Sbjct: 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149
Query: 358 LRVWDTANKR 367
+ +WD N++
Sbjct: 150 VNIWDIENEK 159
Score = 29.5 bits (66), Expect = 4.1
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 186 MQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMW----------EVATGYCVKTLTGHREW 234
++GH ++ + F P S+ + S S D TI++W E+ C+ L GH++
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKK 127
Query: 235 VRQIKVSP-DGTLLASCSNDHTARVWSL 261
+ I +P + ++ S D +W +
Sbjct: 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif.
Alpha-helical motif present in Lis1, treacle, Nopp140,
some katanin p60 subunits, muskelin, tonneau, LEUNIG
and numerous WD40 repeat-containing proteins. It is
suggested that LisH motifs contribute to the regulation
of microtubule dynamics, either by mediating
dimerisation, or else by binding cytoplasmic dynein
heavy chain or microtubules directly.
Length = 34
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 7 QREELNKAVADYLLSNGYLSALEGFKKDADLP 38
R ELN+ + +YLL NGY E +K++ L
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33
>gnl|CDD|149534 pfam08513, LisH, LisH. The LisH (lis homology) domain mediates
protein dimerisation and tetramerisation. The LisH
domain is found in Sif2, a component of the Set3
complex which is responsible for repressing meiotic
genes. It has been shown that the LisH domain helps
mediate interaction with components of the Set3
complex.
Length = 27
Score = 32.3 bits (75), Expect = 0.017
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 EELNKAVADYLLSNGYLSALEGFKKDA 35
EELN+ + DYL+ +GY E F K++
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 34.6 bits (80), Expect = 0.079
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 309 TGSRDKTIKLWDVGSGSLLFTL-IGHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTANK 366
+ +D TI + D + + T +G RG+TF GK L C D T++V D A
Sbjct: 6 SNEKDNTISVIDTATLEVTRTFPVG--QRPRGITFSKDGKLLYVCASDSDTVQVIDPATG 63
Query: 367 RNMKTL 372
+ TL
Sbjct: 64 EVLHTL 69
Score = 33.1 bits (76), Expect = 0.21
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 207 SASRDKTIKMWEVATGYCVKTL-TGHREWVRQIKVSPDGTLLASC-SNDHTARVWSLATK 264
S +D TI + + AT +T G R R I S DG LL C S+ T +V AT
Sbjct: 6 SNEKDNTISVIDTATLEVTRTFPVGQRP--RGITFSKDGKLLYVCASDSDTVQVIDPATG 63
Query: 265 ETKAELR 271
E L
Sbjct: 64 EVLHTLP 70
>gnl|CDD|192111 pfam08647, BRE1, BRE1 E3 ubiquitin ligase. BRE1 is an E3
ubiquitin ligase that has been shown to act as a
transcriptional activator through direct activator
interactions.
Length = 96
Score = 31.9 bits (73), Expect = 0.11
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 43 KKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEY 77
K+ S L KK + L++K + L ++ ++A+++Y
Sbjct: 13 KELSSLALKKVAELTILEQKKLRLTAEKAKADQKY 47
>gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase;
Provisional.
Length = 364
Score = 32.6 bits (74), Expect = 0.36
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS 165
R V ++ PVF + A C+ L + + H + ++ A + KL+
Sbjct: 101 RDAV--LVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFL 158
Query: 166 CS 167
CS
Sbjct: 159 CS 160
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 32.6 bits (74), Expect = 0.39
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 3 LSQRQREEL--NKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
L Q+ R EL K + DY + Y S L+ E++ + + T + L+
Sbjct: 219 LDQQDRYELMVEKLLFDYF-TESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLK 277
Query: 61 KKVIELESKLSEAEK 75
+ L K+ EA K
Sbjct: 278 TQNDNLYEKIQEAMK 292
>gnl|CDD|225044 COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate
transport and metabolism].
Length = 399
Score = 32.4 bits (74), Expect = 0.41
Identities = 33/183 (18%), Positives = 48/183 (26%), Gaps = 46/183 (25%)
Query: 192 NVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC- 250
N + LP D LS + + H + ++ PDG L +
Sbjct: 147 NRVAIGRLPGGDTKLSEPKVIFRGI---------PKGGHH--FGGRLVFGPDGKLYVTTG 195
Query: 251 SNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG 310
SN A LR + P + + G
Sbjct: 196 SNGDPALAQDNV-SLAGKVLRIDRAGI----------------IPADNPFPNSEIW-SYG 237
Query: 311 SRDKTIKLWDVGSGSLLFT------LIGHD--NWVRGVTFHPGGKY---LVSCGDDKTLR 359
R+ W +G+L T L G D N +R PG Y G + R
Sbjct: 238 HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIR-----PGKNYGWPYAYFGQNYDGR 292
Query: 360 VWD 362
Sbjct: 293 AIP 295
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 31.8 bits (73), Expect = 0.45
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 342 FHPGGKYLVSCG---DDKTLRVWDTANKRNMKTLEAHSHFVTSL-DFHRAHPYVVTGS-- 395
+ P G+ ++ G + WD NK+ + T E + ++ Y +T +
Sbjct: 108 WSPFGRLVLLAGFGNLAGQIEFWDVKNKKKIATAE---ASNATDCEWSPDGRYFLTATTS 164
Query: 396 ----VDKTVKVWEC 405
VD K+W
Sbjct: 165 PRLRVDNGFKIWHY 178
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 32.3 bits (73), Expect = 0.50
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 134 DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ-CLKTMQGHD 190
G + S+ D F +G+ ++S +++K+WD++ + +KT+ H
Sbjct: 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.0 bits (71), Expect = 0.77
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 6 RQREELNKAVADY--LL--SNGYLS--ALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRL 59
R R+EL +A Y L S + AL+ + ++L E++K LE++ L
Sbjct: 88 RVRDELRMTIAAYQTLYESSVAFGMRKALQAEQGKSELEQEIKK-----LEEE---KEEL 139
Query: 60 QKKVIELESKLSEAEK 75
+K+V ELE+KL EK
Sbjct: 140 EKRVAELEAKLEAIEK 155
>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like:
Voltage-gated calcium channels are a complex of five
proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
alpha 2 and delta subunits result from proteolytic
processing of a single gene product and carries at its
N-terminus the VWA and cache domains, The alpha 2 delta
gene family has orthologues in D. melanogaster and C.
elegans but none have been detected in aither A.
thaliana or yeast. The exact biochemical function of the
VWA domain is not known but the alpha 2 delta complex
has been shown to regulate various functional properties
of the channel complex.
Length = 190
Score = 30.1 bits (68), Expect = 1.5
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 308 ATGSRDKTIKLWDVGSGSLL---FTLI-----------GHDNWVRGVTFHPGGKYLVSCG 353
AT +D I L DV SGS+ L +++ +TF +V C
Sbjct: 10 ATSPKDIVI-LLDV-SGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCF 67
Query: 354 DDKTLRVWDTANKR------NMKTLEAHSHFVTSLDF 384
+D TL T+NK+ +M + +++ +L+F
Sbjct: 68 ND-TLVQATTSNKKVLKEALDMLEAKGIANYTKALEF 103
>gnl|CDD|234283 TIGR03623, TIGR03623, probable DNA repair protein. Members of this
protein family are bacterial proteins of about 900 amino
acids in length. Members show extended homology to
proteins in TIGR02786, the AddB protein of double-strand
break repair via homologous recombination. Members of
this family, therefore, may be DNA repair proteins.
Length = 874
Score = 30.4 bits (69), Expect = 2.3
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 8 REELNKAVADYLLSNGYLS-ALEGFKKDADLPAEVEKKYSGLLEKKWTSVI--RLQKKVI 64
R +L +A A LL + Y++ A E A L A + + L ++ ++ +
Sbjct: 298 RGKLEQAEASALLRSPYIAGAEEERLARAQLDARLRELAEASL--TLAQLLARAGEENRL 355
Query: 65 ELESKLSE----AEKEYVEGAPTRAKRSPTEWIPRA 96
+L L+E A + P+ + P+ W R
Sbjct: 356 QLCPLLAELLSAAMAFLQK--PSSLRLLPSAWAARF 389
>gnl|CDD|221182 pfam11715, Nup160, Nucleoporin Nup120/160. Nup120 is conserved
from fungi to plants to humans, and is homologous with
the Nup160 of vertebrates. The nuclear core complex, or
NPC, mediates macromolecular transport across the
nuclear envelope. Deletion of the NUP120 gene causes
clustering of NPCs at one side of the nuclear envelope,
moderate nucleolar fragmentation and slower cell growth.
The vertebrate NPC is estimated to contain between 30
and 60 different proteins. most of which are not known.
Two important ones in creating the nucleoporin basket
are Nup98 and Nup153, and Nup120, in conjunction with
Nup 133, interacts with these two and itself plays a
role in mRNA export. Nup160, Nup133, Nup96, and Nup107
are all targets of phosphorylation. The phosphorylation
sites are clustered mainly at the N-terminal regions of
these proteins, which are predicted to be natively
disordered. The entire Nup107-160 subcomplex is stable
throughout the cell cycle, thus it seems unlikely that
phosphorylation affects interactions within the
Nup107-160 subcomplex, but rather that it regulates the
association of the subcomplex with the NPC and other
proteins.
Length = 511
Score = 29.8 bits (67), Expect = 2.6
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCV 225
+ + F+ + S D T+++W + TG C
Sbjct: 226 SSEVNGQTFLFTLSLDGTLRVWNLDTGQCA 255
Score = 29.4 bits (66), Expect = 3.6
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 241 SPDGTLL--ASCSNDHTARVWSLATKETKAELRG-HDHTVECVAWAPGVASESISEAAGR 297
DG LL S D VW + LR +AS + +
Sbjct: 166 LADGGLLKLTRSSGDTDGAVWKETLYGPSSWLRSLRGLLPFQRYGKDRLASSAAASTIVS 225
Query: 298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT 329
G +L T S D T+++W++ +G F
Sbjct: 226 SSEVNGQTFLFTLSLDGTLRVWNLDTGQCAFL 257
>gnl|CDD|153366 cd07682, F-BAR_srGAP2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Protein 2. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs. srGAP2 is expressed in zones
of neuronal differentiation. It plays a role in the
regeneration of neurons and axons. srGAP2 contains an
N-terminal F-BAR domain, a Rho GAP domain, and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 263
Score = 28.5 bits (63), Expect = 5.3
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 1 MVLSQRQREELNKA-VADYLLSN-----GYLSALEG--FKKDADLPAEVEKKYSGLLEKK 52
++L+Q +RE + A ++D L+N +S G FKK ++ ++++ +L +
Sbjct: 76 LLLNQVKRESRDHATLSDIYLNNIIPRFVQISEDSGRLFKKSKEVGLQLQEDLMKVLNEL 135
Query: 53 WTSVIRLQ---KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFA 101
+T + I +SKL EAEK+ E +R+ R PR+P+
Sbjct: 136 YTVMKTYHMYNADSISAQSKLKEAEKQE-EKQMSRSVRQEDRQTPRSPDSTT 186
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 28.7 bits (65), Expect = 5.7
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 33 KDADLPAEVEKKYSGLLEKKWTS---VIRLQKKVIELESKLSEAEKEYVEGA 81
KDA+ A +KK +E K + V L+K + E KL EA+K+ VE A
Sbjct: 511 KDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEA 562
>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57. The
CLD or centrosome localisation domain of Cep57 is found
at the N-terminus, and lies approximately between
residues 58 and 239. This region lies within the first
alpha-helical coiled-coil segment of Cep57, and
localises to the centrosome internally to gamma-tubulin,
suggesting that it is either on both centrioles or on a
centromatrix component. This N-terminal region can also
multimerise with the N-terminus of other Cep57
molecules. The C-terminal part, Family Cep57_MT_bd,
pfam06657, is the microtubule-binding region of Cep57.
Length = 178
Score = 28.2 bits (63), Expect = 5.8
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 29 EGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQK----KVIELESKLSEAEKE 76
E D+ A++EK +LEK++ + R Q K+ +LE KL E E +
Sbjct: 107 EKEHDQMDVQAQLEK--LEVLEKEYLRLTRTQSLAETKIQQLEEKLQEEEHQ 156
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 6.6
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 28 LEGFKKDADLPAEVEKKYSGL------LEKKWTSVIRLQKKVIELESKLSEAEKE 76
LE +K A+ ++++K L L+K+ + L+KK+ ELE KL E E+E
Sbjct: 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE 571
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 28.5 bits (65), Expect = 6.9
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 32 KKDADLPAEVEKKYSGLLEKKW---TSVIRLQKKVIELESKLSEAEKEYVEGA 81
KDA+ AE +KK L+E + + + + +K + EL K+ EKE +E A
Sbjct: 509 VKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAA 561
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.9 bits (65), Expect = 7.0
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 5 QRQREELNKAVADYLLSNGYLS-ALEGFKKD-ADLPAEVEKKYSGLLEKKWTSVIRLQKK 62
+ + EEL + + LS LE K++ +L AE+E+ + L E + L+++
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNE-ELEELEEQ 454
Query: 63 VIELESKLSEAEKEYVE 79
+ EL +L E E+E E
Sbjct: 455 LEELRDRLKELERELAE 471
>gnl|CDD|224661 COG1747, COG1747, Uncharacterized N-terminal domain of the
transcription elongation factor GreA [Function unknown].
Length = 711
Score = 28.3 bits (63), Expect = 8.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 30 GFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYVE 79
G + + L +V KKYS + WT IR+ K ++E + K A KE +E
Sbjct: 200 GEGRGSVLMQDVYKKYSE--NENWTEAIRILKHILEHDEKDVWARKEIIE 247
>gnl|CDD|221757 pfam12761, End3, Actin cytoskeleton-regulatory complex protein
END3. Endocytosis is accomplished through the
sequential recruitment at endocytic sites of proteins
that drive cargo sorting, membrane invagination and
vesicle release. End3p is part of the coat module
protein complex Pan1, along with Pan1p, Sla1p, and
Sla2p. The proteins in this complex are regulated by
phosphorylation events. End3p also regulates the
cortical actin cytoskeleton. The subunits of the Pan1
complex are homologous to mammalian intersectin.
Length = 193
Score = 27.7 bits (62), Expect = 9.7
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 56 VIRLQKKVIELESKLSEAEKE 76
+RL++++ ELESKLS+A++E
Sbjct: 98 EVRLRRELAELESKLSKAQQE 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.406
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,239,336
Number of extensions: 1891302
Number of successful extensions: 2032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 69
Length of query: 406
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 307
Effective length of database: 6,546,556
Effective search space: 2009792692
Effective search space used: 2009792692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)