BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2261
(857 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/535 (59%), Positives = 384/535 (71%), Gaps = 44/535 (8%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+L +LSVS+K GL+ FA+ L+ LG L+ASGGTA ALRD +PVRDV+D+TG PEMLGGR
Sbjct: 6 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 65
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHPAVHAGIL+RN D +DM K ++ +V +VVCNLYPF +TV+ P +P AVE I
Sbjct: 66 VKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 125
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKNH RVTV+CDP+DY+ V K++ AS K+TS E R+ LALKAFTHT+
Sbjct: 126 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 185
Query: 187 YDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDAL 246
YD I DYFRK+YS +Q+ LRYGMNPHQSPAQ++TT KLP+ V+NG PGFINL DAL
Sbjct: 186 YDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 245
Query: 247 NGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYA 306
N WQLVKELK AL +PAAASFKH SPAGAAV L++ E + MV DL ++ LA AYA
Sbjct: 246 NAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYA 305
Query: 307 RARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI 366
R+RGADRMSSFGDFIALSD CD TA++I REVSDG++ PG A +IL KKK G Y +
Sbjct: 306 RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 365
Query: 367 LE-------------------------------------------LPEFAIRDLTVATIA 383
L+ LPE A+RDL VA+IA
Sbjct: 366 LQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIA 425
Query: 384 LKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKR 443
+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP + S KF+ GVKR
Sbjct: 426 VKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKR 485
Query: 444 AEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKA 498
AE SNAID Y+ GTIG+D D W++ F+ P + +TE EK +I L VS+ +
Sbjct: 486 AEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ-LTEAEKKQWIAKLTAVSLSS 539
Score = 360 bits (924), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 228/361 (63%), Gaps = 53/361 (14%)
Query: 497 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 556
+ MV DL ++ LA AYAR+RGADRMSSFGDFIALSD CD TA++I REVSDG++ P
Sbjct: 286 QVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAP 345
Query: 557 GITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIV 616
G A +IL KKK G Y +L++DPNY P E R ++GL L QKRNN + LF NIV
Sbjct: 346 GYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIV 405
Query: 617 SEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPE 676
++ K LPE
Sbjct: 406 TKNK----------------------------------------------------TLPE 413
Query: 677 FAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPN 736
A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP
Sbjct: 414 SAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPR 473
Query: 737 ITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 796
+ S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P + +TE EK +I L
Sbjct: 474 VLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ-LTEAEKKQWIAKL 532
Query: 797 HGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFH 856
VS++SDAFFPFR N+DRA G +F+ AP GS D+ VI+A N +TLIH N RLFH
Sbjct: 533 TAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFH 592
Query: 857 H 857
H
Sbjct: 593 H 593
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/535 (59%), Positives = 384/535 (71%), Gaps = 44/535 (8%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+L +LSVS+K GL+ FA+ L+ LG L+ASGGTA ALRD +PVRDV+D+TG PEMLGGR
Sbjct: 26 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 85
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHPAVHAGIL+RN D +DM K ++ +V +VVCNLYPF +TV+ P +P AVE I
Sbjct: 86 VKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 145
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKNH RVTV+CDP+DY+ V K++ AS K+TS E R+ LALKAFTHT+
Sbjct: 146 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 205
Query: 187 YDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDAL 246
YD I DYFRK+YS +Q+ LRYGMNPHQSPAQ++TT KLP+ V+NG PGFINL DAL
Sbjct: 206 YDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 265
Query: 247 NGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYA 306
N WQLVKELK AL +PAAASFKH SPAGAAV L++ E + MV DL ++ LA AYA
Sbjct: 266 NAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYA 325
Query: 307 RARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI 366
R+RGADRMSSFGDFIALSD CD TA++I REVSDG++ PG A +IL KKK G Y +
Sbjct: 326 RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 385
Query: 367 LE-------------------------------------------LPEFAIRDLTVATIA 383
L+ LPE A+RDL VA+IA
Sbjct: 386 LQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIA 445
Query: 384 LKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKR 443
+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP + S KF+ GVKR
Sbjct: 446 VKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKR 505
Query: 444 AEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKA 498
AE SNAID Y+ GTIG+D D W++ F+ P + +TE EK +I L VS+ +
Sbjct: 506 AEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ-LTEAEKKQWIAKLTAVSLSS 559
Score = 360 bits (923), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 228/361 (63%), Gaps = 53/361 (14%)
Query: 497 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 556
+ MV DL ++ LA AYAR+RGADRMSSFGDFIALSD CD TA++I REVSDG++ P
Sbjct: 306 QVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAP 365
Query: 557 GITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIV 616
G A +IL KKK G Y +L++DPNY P E R ++GL L QKRNN + LF NIV
Sbjct: 366 GYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIV 425
Query: 617 SEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPE 676
++ K LPE
Sbjct: 426 TKNK----------------------------------------------------TLPE 433
Query: 677 FAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPN 736
A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP
Sbjct: 434 SAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPR 493
Query: 737 ITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 796
+ S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P + +TE EK +I L
Sbjct: 494 VLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ-LTEAEKKQWIAKL 552
Query: 797 HGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFH 856
VS++SDAFFPFR N+DRA G +F+ AP GS D+ VI+A N +TLIH N RLFH
Sbjct: 553 TAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFH 612
Query: 857 H 857
H
Sbjct: 613 H 613
>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
Length = 592
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/536 (59%), Positives = 384/536 (71%), Gaps = 44/536 (8%)
Query: 6 GKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGG 65
G+L + SVSDKTGL+ FA+ L+ LG LVASGGTAKALRD + VRDV+++TG PEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGG 63
Query: 66 RVKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
RVKTLHPAVHAGIL+RN D +DM +++++++ +V CNLYPF +TVA P + AVE
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQ 123
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185
IDIGGVTLLRAAAKNH RVTV+C+P DY V ++++S +K+TS E R++LALKAFTHT+
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTA 183
Query: 186 DYDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDA 245
YD I DYFRKQYS +Q+ LRYGMNPHQ+PAQ++T KLPI VLNG PGFINL DA
Sbjct: 184 QYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDA 243
Query: 246 LNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAY 305
LN WQLVKELK AL +PAAASFKH SPAGAAV L++ E K MV DL ++ ++ AY
Sbjct: 244 LNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAY 303
Query: 306 ARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYV 365
ARARGADRMSSFGDF+ALSD CD TA++I REVSDGII PG A IL KKK G Y
Sbjct: 304 ARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNGNYC 363
Query: 366 ILE-------------------------------------------LPEFAIRDLTVATI 382
+L+ LPE A+RDL VATI
Sbjct: 364 VLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIVATI 423
Query: 383 ALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVK 442
A+KYTQSNSV YAKNGQVIGIGAGQQSRIHCTRLAGDK + W++RHHP + S KF+ GVK
Sbjct: 424 AVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKTGVK 483
Query: 443 RAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKA 498
RAE SNAID Y+ GTIG+D D W++ F+ PE +TE EK +++ L VSI +
Sbjct: 484 RAEISNAIDQYVTGTIGEDEDLIKWKALFE-EVPELLTEAEKKEWVEKLTEVSISS 538
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 184/361 (50%), Positives = 226/361 (62%), Gaps = 53/361 (14%)
Query: 497 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 556
K MV DL ++ ++ AYARARGADRMSSFGDF+ALSD CD TA++I REVSDGII P
Sbjct: 285 KVCMVYDLYKTLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAP 344
Query: 557 GITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIV 616
G A IL KKK G Y +L++D +Y P E R +FGL L QKRNN V LF+N+V
Sbjct: 345 GYEEEALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVV 404
Query: 617 SEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPE 676
++ K LPE
Sbjct: 405 TKNK----------------------------------------------------DLPE 412
Query: 677 FAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPN 736
A+RDL VATIA+KYTQSNSV YAKNGQVIGIGAGQQSRIHCTRLAGDK + W++RHHP
Sbjct: 413 SALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQ 472
Query: 737 ITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 796
+ S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ PE +TE EK +++ L
Sbjct: 473 VLSMKFKTGVKRAEISNAIDQYVTGTIGEDEDLIKWKALFE-EVPELLTEAEKKEWVEKL 531
Query: 797 HGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFH 856
VS++SDAFFPFR N+DRA SG +++AP GS D+ VI+A + + L H N RLFH
Sbjct: 532 TEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFH 591
Query: 857 H 857
H
Sbjct: 592 H 592
>pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
pdb|1G8M|B Chain B, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
Length = 593
Score = 626 bits (1615), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/535 (58%), Positives = 378/535 (70%), Gaps = 44/535 (8%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+L +LSVS+K GL+ FA+ L+ LG L+ASGGTA ALRD +PVRDV+D+TG PE LGGR
Sbjct: 6 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEXLGGR 65
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHPAVHAGIL+RN D +D K ++ +V +VVCNLYPF +TV+ P +P AVE I
Sbjct: 66 VKTLHPAVHAGILARNIPEDNADXNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 125
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKNH RVTV+CDP+DY+ V K+ AS K+TS E R+ LALKAFTHT+
Sbjct: 126 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEXAASKDKDTSVETRRHLALKAFTHTAQ 185
Query: 187 YDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDAL 246
YD I DYFRK+YS +Q+ LRYG NPHQSPAQ++TT KLP+ V+NG PGFINL DAL
Sbjct: 186 YDAAISDYFRKEYSKGVSQLPLRYGXNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 245
Query: 247 NGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYA 306
N WQLVKELK AL +PAAASFKH SPAGAAV L++ E + V DL ++ LA AYA
Sbjct: 246 NAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCXVHDLHKTLTPLASAYA 305
Query: 307 RARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI 366
R+RGADR SSFGDFIALSD CD TA++I REVSDG++ PG A +IL KKK G Y +
Sbjct: 306 RSRGADRXSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 365
Query: 367 LE-------------------------------------------LPEFAIRDLTVATIA 383
L+ LPE A+RDL VA+IA
Sbjct: 366 LQXDPNYEPDDNEIRTLYGLQLXQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIA 425
Query: 384 LKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKR 443
+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP + S KF+ GVKR
Sbjct: 426 VKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSXKFKAGVKR 485
Query: 444 AEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKA 498
AE SNAID Y+ GTIG+D D W++ F+ P + +TE EK +I L VS+ +
Sbjct: 486 AEVSNAIDQYVTGTIGEDEDLVKWQAXFEEVPAQ-LTEAEKKQWIAKLTAVSLSS 539
Score = 353 bits (905), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 183/361 (50%), Positives = 225/361 (62%), Gaps = 53/361 (14%)
Query: 497 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 556
+ V DL ++ LA AYAR+RGADR SSFGDFIALSD CD TA++I REVSDG++ P
Sbjct: 286 QVCXVHDLHKTLTPLASAYARSRGADRXSSFGDFIALSDICDVPTAKIISREVSDGVVAP 345
Query: 557 GITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIV 616
G A +IL KKK G Y +L+ DPNY P E R ++GL L QKRNN + LF NIV
Sbjct: 346 GYEEEALKILSKKKNGGYCVLQXDPNYEPDDNEIRTLYGLQLXQKRNNAVIDRSLFKNIV 405
Query: 617 SEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPE 676
++ K LPE
Sbjct: 406 TKNK----------------------------------------------------TLPE 413
Query: 677 FAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPN 736
A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP
Sbjct: 414 SAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPR 473
Query: 737 ITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 796
+ S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P + +TE EK +I L
Sbjct: 474 VLSXKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAXFEEVPAQ-LTEAEKKQWIAKL 532
Query: 797 HGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFH 856
VS++SDAFFPFR N+DRA G +F+ AP GS D+ VI+A N +TLIH N RLFH
Sbjct: 533 TAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFH 592
Query: 857 H 857
H
Sbjct: 593 H 593
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 215/464 (46%), Gaps = 83/464 (17%)
Query: 3 KNNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEM 62
++N +LSVSDK G++ F K+L LG+ ++++GGT K L++ I V +V+D T +PE+
Sbjct: 21 QSNAXRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPEL 80
Query: 63 LGGRVKTLHPAVHAGILSRNTDSDQSDMKKMNYDM-VSIVVCNLYPFSQTVAKPDCNIPT 121
GRVKTLHP +H GIL + +D + K N + + +V NLYPF +T D +
Sbjct: 81 FEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYPFKKTTIXSD-DFDE 139
Query: 122 AVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAF 181
+ENIDIGG +R+AAKN++ V V+CDP DY KVI+ ++ + E R L +KA+
Sbjct: 140 IIENIDIGGPAXIRSAAKNYKDVXVLCDPLDYEKVIETLKKG---QNDENFRLNLXIKAY 196
Query: 182 THTSDYDTNIVDYFRKQYSP---------NEAQISLRYGMNPHQSPAQI-FTTLDKLPIK 231
HT++YD I +Y ++++ + +YG NPHQ A F K
Sbjct: 197 EHTANYDAYIANYXNERFNGGFGASKFIVGQKVFDTKYGENPHQKGALYEFDAFFSANFK 256
Query: 232 VLNGQPGFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMV 291
L G+ F NL D L A PA A KH +P G A IK +V
Sbjct: 257 ALKGEASFNNLTDINAALNLASSFDKA---PAIAIVKHGNPCGFA---------IKENLV 304
Query: 292 EDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLG 351
+ +Y A D +S++G +A++ D + A I + II +
Sbjct: 305 Q-----------SYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEK 353
Query: 352 AREILEKKKGGKYVILELPEFAIR------------------------------------ 375
A + E KK K E P F IR
Sbjct: 354 ALAVFEGKKRIKIFTQESP-FLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLXSQR 412
Query: 376 --------DLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 411
DL +A +T+SN+VVY KNG + IG G SRI
Sbjct: 413 EASKEELKDLEIAXKIAAFTKSNNVVYVKNGAXVAIGXGXTSRI 456
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855
L G +AS+AFFPFR +ID A G K + PGGS D V+ AA+ + L R F
Sbjct: 473 LQGCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGXALYFTGVRHF 532
Query: 856 HH 857
H
Sbjct: 533 LH 534
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 511 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKK 570
L +Y A D +S++G +A++ D + A I + II + A + E KK
Sbjct: 303 LVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVFEGKK 362
Query: 571 GGKYVILEVDPNYTPS--PIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIR 628
K + + P S + + + G + Q + EL + ++ + ++
Sbjct: 363 RIK-IFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVG-EDELKNAKLXSQREASKEELK 420
Query: 629 DLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 664
DL +A +T+SN+VVY KNG + IG G SRI
Sbjct: 421 DLEIAXKIAAFTKSNNVVYVKNGAXVAIGXGXTSRI 456
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 679 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 716
++DL +A +T+SN+VVY KNG + IG G SRI
Sbjct: 419 LKDLEIAXKIAAFTKSNNVVYVKNGAXVAIGXGXTSRI 456
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 219/475 (46%), Gaps = 89/475 (18%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+ ++SV DKTGL+ A+ LS G ++++G TAK + D IPV V +TG PE+L GR
Sbjct: 11 RRALISVYDKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLDGR 70
Query: 67 VKTLHPAVHAGILSRNTDSDQ-SDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
VKTLHP VHAG+L+ S+ + ++++ + +VV NLYPFSQTV + ++ VE
Sbjct: 71 VKTLHPRVHAGLLADLRKSEHAAALEQLGIEAFELVVVNLYPFSQTV-ESGASVDDCVEQ 129
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185
IDIGG ++RAAAKNH V+ DP Y V+ + A RK+LA AF H +
Sbjct: 130 IDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALRAGGFTLAE---RKRLASLAFQHIA 186
Query: 186 DYDTNIVDYFRKQYSPNEAQIS--------------LRYGMNPHQSPAQIFTTLDKLP-- 229
+YD + + ++ +P + LRYG NPHQ A ++ P
Sbjct: 187 EYDIAVASWMQQTLAPEHPVAAFPQWFGRSWRRVAMLRYGENPHQQ-AALYGDPTAWPGL 245
Query: 230 --IKVLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEI 286
+ L+G+ + N DA W+ + + A KH +P G A I
Sbjct: 246 AQAEQLHGKDMSYNNFTDADAAWRAAFDHEQTC----VAIIKHANPCGIA---------I 292
Query: 287 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 346
+ V D A+ +A D +S++G IA + E AE + ++ I+ P
Sbjct: 293 SSVSVAD----------AHRKAHECDPLSAYGGVIAANTEVSVEMAEYVSTIFTEVIVAP 342
Query: 347 GITLGAREILEKKKGGKYVILELP------------------------------------ 370
G GA ++L +KK + ++ P
Sbjct: 343 GYAPGALDVLARKKNIRVLVAAEPLAGGSELRPISGGLLIQQSDQLDAHGDNPANWTLAT 402
Query: 371 -----EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 420
+ DL A A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 403 GSPADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 4/164 (2%)
Query: 511 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKK 570
+A A+ +A D +S++G IA + E AE + ++ I+ PG GA ++L +KK
Sbjct: 297 VADAHRKAHECDPLSAYGGVIAANTEVSVEMAEYVSTIFTEVIVAPGYAPGALDVLARKK 356
Query: 571 GGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTN-IVSEEKWLPEFAIRD 629
+ V++ +P S E R + G L Q+ + + + N ++ + D
Sbjct: 357 NIR-VLVAAEPLAGGS--ELRPISGGLLIQQSDQLDAHGDNPANWTLATGSPADPATLTD 413
Query: 630 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 673
L A A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 414 LVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855
+ G ASDAFFPF ++ +G V PGGS D+ V +AA +TL R F
Sbjct: 462 VRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTLYLTGARHF 521
Query: 856 HH 857
H
Sbjct: 522 AH 523
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 679 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 725
+ DL A A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 411 LTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
>pdb|1ZCZ|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
pdb|1ZCZ|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
Length = 464
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 147/456 (32%), Positives = 205/456 (44%), Gaps = 109/456 (23%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
K +++S+ +K L ++L G+ + AS GTAK L+ I DV+ ITG +LGG
Sbjct: 14 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGL 73
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHP + AGIL D +V +LYP PD I
Sbjct: 74 VKTLHPEIFAGILGPEPRWD-------------VVFVDLYP------PPD---------I 105
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKN ++V D + K+ +I+ EE RK LA F TS
Sbjct: 106 DIGGVALLRAAAKNWKKVKPAFD-METLKLAIEID-------DEETRKYLAGMTFAFTSV 157
Query: 187 YDTNIVDYFRKQYSP--NEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLN-GQP-GFINL 242
YD+ + F + S + LRYG NPH+ K ++L+ G+ F N+
Sbjct: 158 YDSIRANQFVEGISLAFKREDLQLRYGENPHEKA----FVYGKPAFEILHEGKTISFNNI 213
Query: 243 LDALNGWQLVKELKTALNLP--AAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSE 300
LDA N W + K NLP A KH SP GAA+ E K +V+
Sbjct: 214 LDAENAWFMAK------NLPRMGAVVVKHQSPCGAAI------GEDKVEIVK-------- 253
Query: 301 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKK 360
+A AD SSFG +A++ E D A+ + + + + I+ P T A E+L KKK
Sbjct: 254 ------KAIEADDESSFGGILAVNFEMDEEVAKSLKKYL-EVIVAPSFTQEAIEVLSKKK 306
Query: 361 -----------------GGKYVILE---------------LPEFAIRDLTVATIALKYTQ 388
G V+ E L E + DL A ++ +
Sbjct: 307 VRLLKPGDYASWAGKMAFGSLVLSERKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAK 366
Query: 389 SNSVVYAKNGQVIGIGAGQQSRIH----CTRLAGDK 420
SN+V+ AK+G +GIG+GQ SR T +AG+K
Sbjct: 367 SNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEK 402
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 517 RARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI 576
+A AD SSFG +A++ E D A+ + + + + I+ P T A E+L KKK +
Sbjct: 254 KAIEADDESSFGGILAVNFEMDEEVAKSLKKYL-EVIVAPSFTQEAIEVLSKKK-----V 307
Query: 577 LEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPE-LFTNIVSEEKWLPEFAIRDLTVATI 635
+ P S + L L +++ PE F +V E L E + DL A
Sbjct: 308 RLLKPGDYASWAGKMAFGSLVLSERK-----YPEGNFELVVGEP--LSEKELEDLEFAYR 360
Query: 636 ALKYTQSNSVVYAKNGQVIGIGAGQQSRIH----CTRLAGDK 673
++ +SN+V+ AK+G +GIG+GQ SR T +AG+K
Sbjct: 361 VVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEK 402
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 798 GVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFHH 857
G ASDAFFPF +++ +G K V AP GS D+ VI+ A +T +R+F H
Sbjct: 405 GAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH 464
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 669 LAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIH----CTRLAGD 724
+ G+ L E + DL A ++ +SN+V+ AK+G +GIG+GQ SR T +AG+
Sbjct: 342 VVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGE 401
Query: 725 K 725
K
Sbjct: 402 K 402
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 641 QSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYA 700
S+ V + + Q + +G GQ S++H +L+G + E V TI + + SV ++
Sbjct: 450 NSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSE-------VKTI-VHPAEITSVAFS 500
Query: 701 KNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYIL 760
NG + A QSR ++ V N + H N SW F K A S + DN L
Sbjct: 501 NNGAF--LVATDQSR----KVIPYSVANNFELAHTN--SWTFHTA-KVACVSWSPDNVRL 551
Query: 761 GTIGKDMDTKTWESFFDGPPPEPMTEK 787
T D W + P P+ K
Sbjct: 552 ATGSLDNSVIVWN--MNKPSDHPIIIK 576
>pdb|3ZQP|A Chain A, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|B Chain B, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|C Chain C, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|D Chain D, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|E Chain E, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|F Chain F, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|G Chain G, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|H Chain H, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQP|I Chain I, Crystal Structure Of The Small Terminase Oligomerization
Domain From A Spp1-Like Bacteriophage
pdb|3ZQQ|A Chain A, Crystal Structure Of The Full-Length Small Terminase From
A Spp1-Like Bacteriophage
pdb|3ZQQ|B Chain B, Crystal Structure Of The Full-Length Small Terminase From
A Spp1-Like Bacteriophage
pdb|3ZQQ|C Chain C, Crystal Structure Of The Full-Length Small Terminase From
A Spp1-Like Bacteriophage
Length = 164
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 618 EEKWLPEFAIRDL--TVATIALKYTQ-SNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKL 674
+E+++ E+ I D+ T A IA Y++ S S + A+N Q I ++RI +L
Sbjct: 29 QERFIEEYFINDMNATKAAIAAGYSKNSASAIGAENLQKPAI----RARIDA------RL 78
Query: 675 PEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 726
E + + A L++ ++ K ++GIG G +++ H A D++
Sbjct: 79 KEINEKKILQANEVLEHLTRIALGQEKEQVLMGIGKGAETKTHVEVSAKDRI 130
>pdb|3NAP|A Chain A, Structure Of Triatoma Virus (Trv)
Length = 271
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 207 SLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDAL 246
SL Y +PA ++T DKLP+ L + GF LL ++
Sbjct: 67 SLIYPAYAFDNPAAMYTAADKLPVWTLTPRSGFPTLLTSI 106
>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Apo)
pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Holo)
Length = 312
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 643 NSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKN 702
N V + GIG ++ L G+ L EF D+ +AT A Q N V+ +
Sbjct: 47 NGVTXLDTAYIYGIGRSEE-------LIGEVLREFNREDVVIATKAAHRKQGNDFVFDNS 99
Query: 703 GQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPN 736
+ + RL D +D +Y+ H P+
Sbjct: 100 PDFLKKSVDES----LKRLNTDYIDLFYI-HFPD 128
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 598 LEQKRNNFNVTPELF----TNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQV 653
+E+ NN N+ F TNI EK I T TI K+ ++ N QV
Sbjct: 768 MEKYINNINIKTREFIQRCTNINDNEK---SILINSYTFKTIDFKFLNIQAIKNFFNSQV 824
Query: 654 IGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQ 713
+ S A I D++ ++YT+S +VY NG+ + + + +
Sbjct: 825 EQVMKEMLSPYQLLLFATRGPNSNIIEDISGKNTLIQYTESVELVYGVNGESLYLKSPNE 884
Query: 714 S 714
+
Sbjct: 885 T 885
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,370,487
Number of Sequences: 62578
Number of extensions: 1144360
Number of successful extensions: 2913
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2850
Number of HSP's gapped (non-prelim): 52
length of query: 857
length of database: 14,973,337
effective HSP length: 107
effective length of query: 750
effective length of database: 8,277,491
effective search space: 6208118250
effective search space used: 6208118250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)