Query psy2261
Match_columns 857
No_of_seqs 313 out of 1531
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 20:12:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00355 purH phosphoribosyla 100.0 8E-189 2E-193 1554.6 51.2 495 7-857 1-511 (511)
2 COG0138 PurH AICAR transformyl 100.0 9E-189 2E-193 1534.7 47.1 498 6-857 2-515 (515)
3 PLN02891 IMP cyclohydrolase 100.0 2E-187 5E-192 1543.4 51.1 492 5-857 21-547 (547)
4 KOG2555|consensus 100.0 4E-187 8E-192 1490.3 40.5 587 4-857 2-588 (588)
5 PRK00881 purH bifunctional pho 100.0 3E-179 7E-184 1483.4 52.1 497 4-857 2-513 (513)
6 PRK07106 5-aminoimidazole-4-ca 100.0 2E-134 4E-139 1086.9 36.1 388 205-857 3-390 (390)
7 smart00798 AICARFT_IMPCHas AIC 100.0 7E-103 2E-107 830.4 29.8 297 137-726 1-311 (311)
8 PF01808 AICARFT_IMPCHas: AICA 100.0 8E-103 2E-107 832.2 24.9 298 137-726 1-315 (315)
9 cd01421 IMPCH Inosine monophos 100.0 2.5E-78 5.4E-83 604.5 18.7 186 7-195 1-187 (187)
10 KOG2555|consensus 100.0 3.6E-37 7.8E-42 333.1 7.7 175 316-497 316-533 (588)
11 PRK07106 5-aminoimidazole-4-ca 100.0 4.3E-36 9.4E-41 325.4 9.2 184 307-491 103-329 (390)
12 PF01808 AICARFT_IMPCHas: AICA 99.9 7.8E-27 1.7E-31 250.3 6.5 97 325-421 179-315 (315)
13 smart00798 AICARFT_IMPCHas AIC 99.9 1.4E-26 3.1E-31 247.7 7.6 97 325-421 176-311 (311)
14 COG0138 PurH AICAR transformyl 99.9 5.7E-26 1.2E-30 251.7 7.1 105 325-429 311-455 (515)
15 TIGR00355 purH phosphoribosyla 99.9 6E-25 1.3E-29 246.4 7.3 99 325-423 307-445 (511)
16 PLN02891 IMP cyclohydrolase 99.9 6.3E-24 1.4E-28 238.6 7.5 98 325-422 335-481 (547)
17 PRK00881 purH bifunctional pho 99.9 1.2E-22 2.7E-27 228.8 7.0 100 325-424 311-448 (513)
18 PF02142 MGS: MGS-like domain 99.6 2.2E-16 4.7E-21 142.2 4.1 95 18-132 1-95 (95)
19 cd00532 MGS-like MGS-like doma 99.4 2.4E-13 5.1E-18 126.1 9.0 107 9-154 2-110 (112)
20 smart00851 MGS MGS-like domain 99.4 2.1E-13 4.6E-18 121.4 7.0 90 18-132 1-90 (90)
21 cd01423 MGS_CPS_I_III Methylgl 99.0 2.3E-09 5E-14 99.6 8.6 53 8-60 2-56 (116)
22 cd01424 MGS_CPS_II Methylglyox 98.9 4E-09 8.7E-14 97.0 7.0 101 7-151 1-103 (110)
23 PRK05234 mgsA methylglyoxal sy 98.8 2.7E-08 5.8E-13 97.3 9.9 117 5-161 3-124 (142)
24 PRK05294 carB carbamoyl phosph 98.6 1.1E-07 2.5E-12 117.3 10.5 114 5-162 936-1051(1066)
25 PLN02735 carbamoyl-phosphate s 98.4 2.1E-07 4.5E-12 115.5 5.8 115 5-162 971-1087(1102)
26 TIGR01369 CPSaseII_lrg carbamo 98.3 1.2E-06 2.6E-11 108.3 9.9 111 5-158 936-1048(1050)
27 PRK12815 carB carbamoyl phosph 98.2 1.3E-06 2.9E-11 108.1 5.4 114 5-162 936-1051(1068)
28 cd01422 MGS Methylglyoxal synt 98.1 1.5E-06 3.3E-11 81.9 3.6 47 9-56 3-53 (115)
29 PF06230 DUF1009: Protein of u 93.5 0.5 1.1E-05 50.1 10.0 39 810-848 172-213 (214)
30 KOG0370|consensus 90.8 0.2 4.3E-06 61.9 3.7 44 3-46 1294-1338(1435)
31 PF07085 DRTGG: DRTGG domain; 78.2 1 2.2E-05 41.4 1.2 53 799-855 43-96 (105)
32 TIGR01182 eda Entner-Doudoroff 77.5 2.7 5.8E-05 44.3 4.1 35 811-848 71-105 (204)
33 PF01081 Aldolase: KDPG and KH 72.7 3.5 7.5E-05 43.2 3.4 35 811-848 71-105 (196)
34 PRK06015 keto-hydroxyglutarate 72.2 4.3 9.3E-05 42.7 4.0 41 798-848 61-101 (201)
35 PRK07114 keto-hydroxyglutarate 66.2 6.8 0.00015 41.8 4.0 35 811-848 82-116 (222)
36 PRK06552 keto-hydroxyglutarate 62.8 8.8 0.00019 40.5 4.1 35 811-848 79-113 (213)
37 PRK05718 keto-hydroxyglutarate 58.4 11 0.00024 39.8 4.0 35 811-848 78-112 (212)
38 COG0800 Eda 2-keto-3-deoxy-6-p 57.6 10 0.00023 40.4 3.5 35 811-848 76-110 (211)
39 PRK08264 short chain dehydroge 55.7 83 0.0018 31.8 9.5 125 4-153 4-137 (238)
40 PF08149 BING4CT: BING4CT (NUC 55.2 3.8 8.3E-05 37.7 -0.1 36 796-831 7-42 (80)
41 PF11009 DUF2847: Protein of u 53.9 26 0.00057 33.7 5.2 18 261-278 19-36 (105)
42 PF13380 CoA_binding_2: CoA bi 47.1 25 0.00054 33.5 4.0 37 810-848 69-106 (116)
43 PRK04017 hypothetical protein; 44.6 84 0.0018 31.5 7.2 70 84-177 31-105 (132)
44 TIGR00160 MGSA methylglyoxal s 44.1 20 0.00044 36.3 3.0 113 8-160 5-121 (143)
45 PRK07806 short chain dehydroge 43.8 2.1E+02 0.0045 29.1 10.3 38 1-38 1-38 (248)
46 cd01987 USP_OKCHK USP domain i 42.3 37 0.0008 31.0 4.2 40 814-854 56-95 (124)
47 cd00530 PTE Phosphotriesterase 42.2 33 0.00071 36.5 4.4 40 811-850 36-78 (293)
48 PRK07102 short chain dehydroge 41.9 1E+02 0.0022 31.4 7.8 127 7-150 2-136 (243)
49 PRK06842 fumarate hydratase; P 40.0 42 0.00091 35.3 4.6 36 814-851 89-125 (185)
50 PF06506 PrpR_N: Propionate ca 39.1 18 0.0004 36.4 1.9 130 15-161 18-161 (176)
51 PF13528 Glyco_trans_1_3: Glyc 38.8 42 0.00092 35.6 4.6 93 8-108 2-105 (318)
52 COG2355 Zn-dependent dipeptida 36.8 1.9E+02 0.0042 32.8 9.4 82 81-179 201-301 (313)
53 PF01548 DEDD_Tnp_IS110: Trans 36.1 31 0.00068 32.9 2.8 55 15-69 31-94 (144)
54 PRK08862 short chain dehydroge 35.6 83 0.0018 32.6 6.0 40 6-45 5-44 (227)
55 COG1936 Predicted nucleotide k 35.2 29 0.00062 36.4 2.5 110 21-148 15-137 (180)
56 PRK07097 gluconate 5-dehydroge 35.0 2.1E+02 0.0046 29.7 8.9 125 7-150 11-147 (265)
57 PRK07523 gluconate 5-dehydroge 35.0 1.2E+02 0.0026 31.2 7.0 40 6-45 10-49 (255)
58 cd04732 HisA HisA. Phosphorib 34.4 1.1E+02 0.0023 31.7 6.6 96 17-149 29-129 (234)
59 PF07905 PucR: Purine cataboli 33.5 65 0.0014 30.8 4.5 41 812-852 64-107 (123)
60 PF08260 Kinin: Insect kinin p 33.2 17 0.00037 20.5 0.3 7 429-435 1-7 (8)
61 TIGR03590 PseG pseudaminic aci 33.0 2E+02 0.0043 31.1 8.6 93 19-155 20-117 (279)
62 PRK13361 molybdenum cofactor b 31.9 1.2E+02 0.0025 33.7 6.8 73 16-100 75-159 (329)
63 TIGR02717 AcCoA-syn-alpha acet 31.7 3.1E+02 0.0067 32.1 10.4 158 10-187 271-446 (447)
64 PF07799 DUF1643: Protein of u 31.6 39 0.00085 32.7 2.7 50 88-142 39-88 (136)
65 TIGR00661 MJ1255 conserved hyp 29.9 72 0.0016 34.7 4.7 42 8-50 1-49 (321)
66 TIGR01686 FkbH FkbH-like domai 28.9 1.1E+02 0.0024 33.7 6.0 42 135-176 116-158 (320)
67 COG0117 RibD Pyrimidine deamin 28.6 66 0.0014 32.8 3.8 46 376-421 13-62 (146)
68 PRK07576 short chain dehydroge 28.6 1.1E+02 0.0025 31.9 5.7 41 3-43 6-46 (264)
69 PRK06128 oxidoreductase; Provi 28.1 5.3E+02 0.011 27.6 10.7 31 6-36 55-85 (300)
70 PF02602 HEM4: Uroporphyrinoge 27.7 64 0.0014 32.9 3.6 111 30-162 73-189 (231)
71 PF13524 Glyco_trans_1_2: Glyc 27.5 2.2E+02 0.0047 25.0 6.5 47 133-185 32-78 (92)
72 COG3967 DltE Short-chain dehyd 27.5 1.6E+02 0.0035 32.2 6.5 41 5-45 4-44 (245)
73 PF05913 DUF871: Bacterial pro 27.5 58 0.0013 37.2 3.6 111 5-124 27-160 (357)
74 PRK04247 hypothetical protein; 27.4 57 0.0012 35.6 3.3 30 341-371 208-237 (238)
75 PRK02492 deoxyhypusine synthas 27.3 1.1E+02 0.0024 35.1 5.6 116 3-148 55-195 (347)
76 PRK06101 short chain dehydroge 27.3 4.3E+02 0.0094 27.0 9.6 39 7-45 2-40 (240)
77 cd02169 Citrate_lyase_ligase C 27.2 5.5E+02 0.012 28.8 10.9 114 23-182 51-170 (297)
78 TIGR02571 ComEB ComE operon pr 25.9 3.7E+02 0.0081 27.2 8.5 55 796-851 85-139 (151)
79 PRK05928 hemD uroporphyrinogen 25.7 3.8E+02 0.0082 27.3 8.8 125 16-162 61-198 (249)
80 cd06578 HemD Uroporphyrinogen- 25.5 2.9E+02 0.0063 27.8 7.8 124 15-162 57-194 (239)
81 TIGR00723 ttdB_fumA_fumB hydro 25.2 1E+02 0.0022 32.1 4.5 36 814-851 79-116 (168)
82 PRK08228 L(+)-tartrate dehydra 25.2 97 0.0021 33.2 4.4 35 815-851 93-128 (204)
83 COG1976 TIF6 Translation initi 24.9 90 0.0019 33.8 4.1 41 312-366 96-136 (222)
84 PRK14869 putative manganese-de 24.8 70 0.0015 37.7 3.7 46 809-854 190-235 (546)
85 cd00452 KDPG_aldolase KDPG and 24.7 66 0.0014 32.8 3.1 38 808-848 64-101 (190)
86 PF03033 Glyco_transf_28: Glyc 24.3 1.1E+02 0.0024 28.5 4.3 42 15-56 11-54 (139)
87 PLN02257 phosphoribosylamine-- 23.8 31 0.00068 39.9 0.6 116 12-160 47-169 (434)
88 PRK06179 short chain dehydroge 23.7 5.4E+02 0.012 26.6 9.6 119 7-151 5-134 (270)
89 PLN02448 UDP-glycosyltransfera 23.4 1.3E+02 0.0028 35.0 5.5 88 15-108 23-119 (459)
90 PF05683 Fumerase_C: Fumarase 23.3 97 0.0021 33.2 4.0 36 814-851 116-152 (205)
91 PRK04247 hypothetical protein; 23.3 79 0.0017 34.5 3.4 28 549-577 206-233 (238)
92 PRK11009 aphA acid phosphatase 23.0 2.6E+02 0.0056 30.3 7.2 79 16-99 116-209 (237)
93 PRK06500 short chain dehydroge 22.7 1.4E+02 0.003 30.3 4.9 43 1-43 1-43 (249)
94 cd01989 STK_N The N-terminal d 22.6 1.1E+02 0.0024 28.8 3.9 33 821-854 81-113 (146)
95 cd00527 IF6 Ribosome anti-asso 22.3 2.9E+02 0.0064 29.7 7.4 36 524-573 142-177 (220)
96 PRK13790 phosphoribosylamine-- 22.3 31 0.00068 38.9 0.2 118 11-160 11-134 (379)
97 COG0120 RpiA Ribose 5-phosphat 22.0 56 0.0012 35.5 2.0 32 683-722 9-40 (227)
98 PRK09140 2-dehydro-3-deoxy-6-p 21.9 89 0.0019 32.9 3.4 36 811-849 74-109 (206)
99 TIGR01426 MGT glycosyltransfer 21.7 1.5E+02 0.0033 32.8 5.4 45 15-59 8-54 (392)
100 PLN02173 UDP-glucosyl transfer 21.7 1.4E+02 0.0031 35.0 5.4 107 1-113 1-121 (449)
101 COG1184 GCD2 Translation initi 20.7 1.5E+02 0.0032 33.6 4.9 51 6-56 119-179 (301)
102 PF08727 P3A: Poliovirus 3A pr 20.1 35 0.00076 29.8 0.0 15 830-844 26-40 (57)
No 1
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=100.00 E-value=7.7e-189 Score=1554.61 Aligned_cols=495 Identities=42% Similarity=0.654 Sum_probs=451.5
Q ss_pred cEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC-Chh
Q psy2261 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN-TDS 85 (857)
Q Consensus 7 graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~-~~~ 85 (857)
+||||||+||+++++||+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+|+ +++
T Consensus 1 kraLISVsDK~~iv~lAk~L~~lGfeIiATgGTak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~ 80 (511)
T TIGR00355 1 RRALLSVSDKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDD 80 (511)
T ss_pred CEEEEEEeCcccHHHHHHHHHHCCCEEEEechHHHHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999977 466
Q ss_pred hHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHcCCC
Q psy2261 86 DQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPT 165 (857)
Q Consensus 86 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~~~~ 165 (857)
+++|++|||++|||||||||||++|+++++++++|+|||||||||||||||||||++|+|||||+||+.++++|+. +
T Consensus 81 -~~~l~~~~I~~IDlVvvNLYPF~~tv~~~~~~~~e~IEnIDIGGptmlRaAAKN~~~V~Vv~dp~dY~~vl~el~~--~ 157 (511)
T TIGR00355 81 -DADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVENIDIGGPTMLRAAAKNHADVTILVDPKDYSAILSELDE--Q 157 (511)
T ss_pred -HHHHHHcCCCceeEEEEeccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh--c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhHHHHhhhhhcc----CC-----cccccccccCCCCCCccccccccc-----Cccchh
Q psy2261 166 KETSEEIRKKLALKAFTHTSDYDTNIVDYFRKQY----SP-----NEAQISLRYGMNPHQSPAQIFTTL-----DKLPIK 231 (857)
Q Consensus 166 G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl~~~~----~~-----~~~~~~LRYGENPHQ~~AalY~~~-----~~~~~~ 231 (857)
|++|+++|++||.|||+|||+||++|++||++++ ++ .++.+.|||||||||+ |+||... +...++
T Consensus 158 g~~s~~~R~~lA~kAF~~Ta~YD~~Ia~yl~~~~~~~~p~~~~~~~~k~~~LRYGENPHQ~-Aa~Y~~~~~~~~~~~~~~ 236 (511)
T TIGR00355 158 GSISLALRFDLAIKAFEHTAAYDAAIANYFGKLVGEKEPRQFNLNFTKKQTLRYGENPHQK-AAFYVTQNVKEGSVATAE 236 (511)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcceeccccCCCCCcccc-eeeecccCcCCcccccee
Confidence 9999999999999999999999999999997543 22 3788999999999999 8999753 235689
Q ss_pred hhcCCC-CCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCChhhhhhhhhcccccCCchHHHHHHHHHc
Q psy2261 232 VLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARG 310 (857)
Q Consensus 232 ~L~Gk~-SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~~~~~~~~~~~~~~~~~~~l~~Ay~~A~~ 310 (857)
|||||+ |||||+|+|+||++|+||+ +|+||||||+||||+|++ .++.+||++||+
T Consensus 237 qL~GKelSyNNilD~daA~~~v~ef~----~pa~vivKH~nPCGvA~~--------------------~~l~~Ay~~A~~ 292 (511)
T TIGR00355 237 QLQGKELSYNNIADADAALEIVKEFD----EPAAVIVKHANPCGVALG--------------------KTILDAYDRAFG 292 (511)
T ss_pred eecCCCCCccchhchHHHHHHHHhcC----CCcEEEEecCCcceeecC--------------------CCHHHHHHHHHh
Confidence 999986 9999999999999999997 599999999999999999 377778888777
Q ss_pred CCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCchhcccchhHHHHhhhccccc
Q psy2261 311 ADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELPEFAIRDLTVATIALKYTQSN 390 (857)
Q Consensus 311 ~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~~~~~~dl~~a~~~~~~~ksn 390 (857)
|||+|||||||
T Consensus 293 ~Dp~SaFGGiv--------------------------------------------------------------------- 303 (511)
T TIGR00355 293 ADPTSAFGGII--------------------------------------------------------------------- 303 (511)
T ss_pred cCCccccCCEE---------------------------------------------------------------------
Confidence 77777777777
Q ss_pred eEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhhhhccccccccccccccCCCCCccccccc
Q psy2261 391 SVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESF 470 (857)
Q Consensus 391 ~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (857)
T Consensus 304 -------------------------------------------------------------------------------- 303 (511)
T TIGR00355 304 -------------------------------------------------------------------------------- 303 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCCcccccCceeeeccccCHHHHHHhccceE
Q psy2261 471 FDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVS 550 (857)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~DpvSAFGgiIA~Nr~vD~~tA~~i~~~f~ 550 (857)
|+||+||.+||++|.++|+
T Consensus 304 -------------------------------------------------------------a~N~~vd~~~A~~i~~~F~ 322 (511)
T TIGR00355 304 -------------------------------------------------------------ALNRELDVPTAKAIVRQFL 322 (511)
T ss_pred -------------------------------------------------------------EECCccCHHHHHHHHhheE
Confidence 9999999999999999999
Q ss_pred EEEEcCCCChhHHHHHHhccCCcEEEEEeCCCCCCCCceEEEEeeeEEEeecCCCCCCcccccccccccCCCCHHHHHhh
Q psy2261 551 DGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIRDL 630 (857)
Q Consensus 551 EvIIAP~fe~eALeiL~~KKnlR~~iL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vvT~~~~~~~~~~~dl 630 (857)
||||||+|+||||+||++|||+|++.+..++.+ .+.+++|+|.||+|+|++|...+++.+| ++||+++ ||++|++||
T Consensus 323 EvviAP~f~~eAl~iL~~KKnlRll~~~~~~~~-~~~~~~r~v~GG~LvQ~~d~~~~~~~~~-~vVt~~~-pt~~e~~dL 399 (511)
T TIGR00355 323 EVIIAPGYSAEALEILAKKKNLRVLILGIWANR-VPELDFKRVNGGLLVQDRDDGMVDQSTL-KVVTKRQ-PTEQELIDL 399 (511)
T ss_pred EEEEcCCCCHHHHHHHhhCCCEEEEEecCCCCC-CCCceEEEEeeEEEEECCCCCCCChhhc-eeeCCCC-CCHHHHHHH
Confidence 999999999999999999999995444221222 3568999999999999999988887888 7999987 488887777
Q ss_pred HHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhhhhhHHHHHHhhccccceEEEeeCCeEEeecC
Q psy2261 631 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGA 710 (857)
Q Consensus 631 ~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DLl~a~~~~k~vkSNsIv~akdg~tvGIGa 710 (857)
.|||+|||||| ||||||+|||||||||+
T Consensus 400 ~FAwkv~k~vK----------------------------------------------------SNAIv~akd~~tvGiGa 427 (511)
T TIGR00355 400 LFAWKVAKHVK----------------------------------------------------SNAIVYAKNNMTVGVGA 427 (511)
T ss_pred HHHHHHHhhcc----------------------------------------------------CceEEEEeCCeEEEecC
Confidence 77777766655 55679999999999999
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhcCCcccccccccccccccchhhhhhccCCcCCCCchhhhhcccCCCCCCCCCHHHHH
Q psy2261 711 GQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 790 (857)
Q Consensus 711 GQ~sRV~~~riA~~KA~~~~lr~h~~v~~~~f~~~~~r~e~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~er~ 790 (857)
||||||||+|+|++||++. |
T Consensus 428 GQ~sRV~s~riA~~kA~~~-------------------------------~----------------------------- 447 (511)
T TIGR00355 428 GQMSRVGSAKIAGIKADDE-------------------------------G----------------------------- 447 (511)
T ss_pred CCccHHHHHHHHHHHHHhh-------------------------------C-----------------------------
Confidence 9999999999999999620 1
Q ss_pred hhhhccCceEEeccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCCCCC
Q psy2261 791 DFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFHH 857 (857)
Q Consensus 791 ~~~~~l~G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~RhFrH 857 (857)
.+++|+||||||||||+|+||.|+++||+|||||||||||+|||++||||||+|||||+|||||
T Consensus 448 ---~~~~G~vlASDAFFPF~D~ve~aa~aGi~aIiQPGGSiRD~evI~aa~e~giaMvfTg~RhFrH 511 (511)
T TIGR00355 448 ---LEAKGSSLASDAFFPFRDGVEEAAAAGITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRHFRH 511 (511)
T ss_pred ---CCccCcEEEeccccCCCccHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhCCEEEECCCCCCCC
Confidence 1268999999999999999999999999999999999999999999999999999999999999
No 2
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.3e-189 Score=1534.72 Aligned_cols=498 Identities=45% Similarity=0.680 Sum_probs=458.3
Q ss_pred ccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC-Ch
Q psy2261 6 GKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN-TD 84 (857)
Q Consensus 6 ~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~-~~ 84 (857)
.+|+|||||||+|+++||+.|.++|++|+|||||+++|+++||||+.|+++||||||||||||||||+||||||+|+ .+
T Consensus 2 ikrALiSVsdKtGive~ak~L~~~gvei~STGGTak~l~eaGi~V~~Vs~~TgfpE~ldGRVKTLHP~ihgGiL~~r~~~ 81 (515)
T COG0138 2 IKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDGRVKTLHPKIHGGILARRDKD 81 (515)
T ss_pred cchhheeeccccChHHHHHHHHhCCEEEEecCCHHHHHHhCCCCCCchhhccCChhHhCCcceeeccccccceeeccccH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999976 79
Q ss_pred hhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHcCC
Q psy2261 85 SDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASP 164 (857)
Q Consensus 85 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~~~ 164 (857)
+|+++|++|+|.+|||||||||||++|++++|++++|+|||||||||||+|||||||++|+|+|||+||+.++++|+.
T Consensus 82 ~h~~~l~e~~I~~iDlVvvNLYPF~~tv~~~~~~~~e~vEnIDIGGptmlRaAAKN~~~V~V~~dp~Dy~~vl~~l~~-- 159 (515)
T COG0138 82 EHMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAVENIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKA-- 159 (515)
T ss_pred HHHHHHHHcCCCCccEEEEcCCChhhhccCCCCCHHHHHhccccCchHHhHHhhhccCCeeEEecchhhHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhHHHHhhhhhcc----CC-----cccccccccCCCCCCccccccccc----Cccchh
Q psy2261 165 TKETSEEIRKKLALKAFTHTSDYDTNIVDYFRKQY----SP-----NEAQISLRYGMNPHQSPAQIFTTL----DKLPIK 231 (857)
Q Consensus 165 ~G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl~~~~----~~-----~~~~~~LRYGENPHQ~~AalY~~~----~~~~~~ 231 (857)
+|++|+++|++||.|||+|||+||++|++||++.+ +. ..+.+.|||||||||+ |++|.+. +..+++
T Consensus 160 ~~~~~~~~R~~lA~kaF~hTA~YDaaI~~~~~~~~~~~fp~~~~~~~~~~~~lRYGENPHQ~-aa~Y~~~~~~~~va~a~ 238 (515)
T COG0138 160 NGELSLATRKRLAAKAFEHTAAYDAAIANYFSELLGGEFPEQLNLSFTKKQDLRYGENPHQS-AAFYRDGNAKGGVATAK 238 (515)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccchheecccccceeeecCCCCCCC-CeEEecCCCCCchhhHH
Confidence 46999999999999999999999999999998643 22 3778999999999998 7899764 356889
Q ss_pred hhcCCC-CCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCChhhhhhhhhcccccCCchHHHHHHHHHc
Q psy2261 232 VLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARG 310 (857)
Q Consensus 232 ~L~Gk~-SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~~~~~~~~~~~~~~~~~~~l~~Ay~~A~~ 310 (857)
|||||+ |||||+|+|+||++|+||+.. .|||+||||+||||+|+| .++++||.+||+
T Consensus 239 qL~GK~lSYNNi~DaDaA~~~v~ef~~~--~pa~~ivKH~NPcGvA~~--------------------~~i~~Ay~~A~~ 296 (515)
T COG0138 239 QLQGKELSYNNIADADAAWELVKEFDEP--GPACAIVKHANPCGVAVG--------------------DTIAEAYKRAYE 296 (515)
T ss_pred HhcCCcccccchhhHHHHHHHHHhcCCc--CceEEEEecCCCchhccC--------------------hhHHHHHHHHHc
Confidence 999997 999999999999999999852 589999999999999999 367777777777
Q ss_pred CCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCchhcccchhHHHHhhhccccc
Q psy2261 311 ADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELPEFAIRDLTVATIALKYTQSN 390 (857)
Q Consensus 311 ~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~~~~~~dl~~a~~~~~~~ksn 390 (857)
|||+|||||||
T Consensus 297 ~D~~SaFGGII--------------------------------------------------------------------- 307 (515)
T COG0138 297 ADPTSAFGGII--------------------------------------------------------------------- 307 (515)
T ss_pred CCCccccCCEE---------------------------------------------------------------------
Confidence 77777777777
Q ss_pred eEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhhhhccccccccccccccCCCCCccccccc
Q psy2261 391 SVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESF 470 (857)
Q Consensus 391 ~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (857)
T Consensus 308 -------------------------------------------------------------------------------- 307 (515)
T COG0138 308 -------------------------------------------------------------------------------- 307 (515)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCCcccccCceeeeccccCHHHHHHhccceE
Q psy2261 471 FDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVS 550 (857)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~DpvSAFGgiIA~Nr~vD~~tA~~i~~~f~ 550 (857)
|+||+||.+||+.|.++|+
T Consensus 308 -------------------------------------------------------------A~Nr~vD~etA~~i~~~F~ 326 (515)
T COG0138 308 -------------------------------------------------------------ALNREVDVETAEAISKIFL 326 (515)
T ss_pred -------------------------------------------------------------EEcCccCHHHHHHHHhhhE
Confidence 9999999999999999999
Q ss_pred EEEEcCCCChhHHHHHHhccCCcEEEEEeCCC-CCCCCceEEEEeeeEEEeecCCCCCCcccccccccccCCCCHHHHHh
Q psy2261 551 DGIICPGITLGAREILEKKKGGKYVILEVDPN-YTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIRD 629 (857)
Q Consensus 551 EvIIAP~fe~eALeiL~~KKnlR~~iL~~~~~-~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vvT~~~~~~~~~~~d 629 (857)
||||||+|+++||+||++|||+| ||++++. +....+++|+|.||+|+|+||...++..+| ++||+++ ||++|++|
T Consensus 327 EvIIAP~~~~~Al~il~kK~NlR--vL~~~~~~~~~~~~~~k~v~GGlLvQ~~d~~~~~~~~~-~vVTkr~-pt~~e~~d 402 (515)
T COG0138 327 EVIIAPSYTEEALEILAKKKNLR--VLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMIDEAEL-KVVTKRQ-PTEQELED 402 (515)
T ss_pred EEEEcCCCCHHHHHHHhhcCceE--EEecCCCCCCCcceeEEEEeeeEEEEcccccccCccce-eEecCCC-CCHHHHHH
Confidence 99999999999999999999999 8888742 334569999999999999999999988888 8999998 48777777
Q ss_pred hHHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhhhhhHHHHHHhhccccceEEEeeCCeEEeec
Q psy2261 630 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIG 709 (857)
Q Consensus 630 l~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DLl~a~~~~k~vkSNsIv~akdg~tvGIG 709 (857)
|+|||+|||||| ||||||+|||+|||||
T Consensus 403 l~Fawkv~k~vK----------------------------------------------------SNaIv~akd~~TvGiG 430 (515)
T COG0138 403 LLFAWKVVKHVK----------------------------------------------------SNAIVYAKDGQTVGIG 430 (515)
T ss_pred HHHHHHHHhHhc----------------------------------------------------cceEEEEcCCeEEEec
Confidence 777777766654 5567999999999999
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhcCCcccccccccccccccchhhhhhccCCcCCCCchhhhhcccCCCCCCCCCHHHH
Q psy2261 710 AGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEK 789 (857)
Q Consensus 710 aGQ~sRV~~~riA~~KA~~~~lr~h~~v~~~~f~~~~~r~e~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~er 789 (857)
+||||||+|+|||++||++||+
T Consensus 431 aGQ~sRV~sariA~~kA~~~~~---------------------------------------------------------- 452 (515)
T COG0138 431 AGQMSRVDSARIAAEKAGDAGL---------------------------------------------------------- 452 (515)
T ss_pred CCccchHHHHHHHHHHHHHhhh----------------------------------------------------------
Confidence 9999999999999999987643
Q ss_pred HhhhhccCceEEeccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCCCCC
Q psy2261 790 ADFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFHH 857 (857)
Q Consensus 790 ~~~~~~l~G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~RhFrH 857 (857)
.+.|+||||||||||+|+|+.|+++||+|||||||||||+|||++||||||+|||||+|||||
T Consensus 453 -----~~~Gav~ASDAFFPF~D~i~~aA~aGi~aIIqPGGSirD~eVI~aAde~giaMvfTg~RhF~H 515 (515)
T COG0138 453 -----RAHGAVLASDAFFPFPDGIDAAAKAGIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH 515 (515)
T ss_pred -----hccCcEEeecccCCCcchHHHHHHcCCeEEECCCCccccHHHHHHHHhcCcEEEEccccccCC
Confidence 156999999999999999999999999999999999999999999999999999999999999
No 3
>PLN02891 IMP cyclohydrolase
Probab=100.00 E-value=2.5e-187 Score=1543.36 Aligned_cols=492 Identities=38% Similarity=0.607 Sum_probs=449.4
Q ss_pred CccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC-C
Q psy2261 5 NGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN-T 83 (857)
Q Consensus 5 ~~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~-~ 83 (857)
..+|||||||||+||++||+.|.++||+|+|||||+++|+++||+|+.|+++||||||||||||||||+||||||+|+ +
T Consensus 21 ~~krALISVsDKtgi~~fAk~L~~~gveIiSTgGTak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGILa~r~~ 100 (547)
T PLN02891 21 GKKQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPAVHGGILARRDQ 100 (547)
T ss_pred cccEEEEEEecccCHHHHHHHHHHCCCEEEEcchHHHHHHHcCCceeeHHhccCCchhhCCcccccCchhhhhhhcCCCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999999965 7
Q ss_pred hhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHcC
Q psy2261 84 DSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEAS 163 (857)
Q Consensus 84 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~~ 163 (857)
++|+++|++|||++|||||||||||++|+++++.+++++|||||||||||||||||||++|+|||||+||+.++++|+.
T Consensus 101 ~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP~DY~~vl~el~~- 179 (547)
T PLN02891 101 EHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDPADYPALLEYLKG- 179 (547)
T ss_pred HHHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCHHHHHHHHHHHHc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCCCH-HHHHHHHHHHHHHhhhhhHHHHhhhhhc------cCC-----cccccccccCCCCCCccccccccc------
Q psy2261 164 PTKETSE-EIRKKLALKAFTHTSDYDTNIVDYFRKQ------YSP-----NEAQISLRYGMNPHQSPAQIFTTL------ 225 (857)
Q Consensus 164 ~~G~~s~-~~R~~LA~kAF~~tA~YD~aIa~yl~~~------~~~-----~~~~~~LRYGENPHQ~~AalY~~~------ 225 (857)
|.+++ ++|++||.|||+|||+||++|++||+++ |++ .++.+.|||||||||+ |+||...
T Consensus 180 --g~~~~~~~R~~LA~kAF~~Ta~YD~~Ia~yl~~~~~~~~~~p~~~~~~~~k~~~LRYGENPHQ~-Aa~Y~~~~~~~~~ 256 (547)
T PLN02891 180 --KQDDQQDFRRKLAWKAFQHVASYDSAVSEWLWKQINGGGKFPPSLTVPLTLKSSLRYGENPHQK-AAFYVDKSLSEVN 256 (547)
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhhcccccccCCCCCCcccC-cceeecCcccccc
Confidence 77886 9999999999999999999999999753 222 3778999999999999 7899753
Q ss_pred --CccchhhhcCCC-CCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCChhhhhhhhhcccccCCchHH
Q psy2261 226 --DKLPIKVLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELA 302 (857)
Q Consensus 226 --~~~~~~~L~Gk~-SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~~~~~~~~~~~~~~~~~~~l~ 302 (857)
+...++|||||+ |||||+|+|+||++|+||+ +|+||||||+||||+|++ +++.
T Consensus 257 ~~~~~~~~ql~GKelSyNN~lD~daA~~~v~ef~----~pa~vivKH~nPCGvA~~--------------------~~~~ 312 (547)
T PLN02891 257 AGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFS----NPTCVVVKHTNPCGVASR--------------------GDIL 312 (547)
T ss_pred cccchhhHHhcCCCCCcchhhchHHHHHHHHhcC----cCeeeeecccCccceeec--------------------CCHH
Confidence 236789999986 9999999999999999997 599999999999999998 3777
Q ss_pred HHHHHHHcCCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCchhcccchhHHHH
Q psy2261 303 VAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELPEFAIRDLTVATI 382 (857)
Q Consensus 303 ~Ay~~A~~~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~~~~~~dl~~a~~ 382 (857)
+||++||+|||+|||||||
T Consensus 313 eAy~~A~~~Dp~SaFGGIv------------------------------------------------------------- 331 (547)
T PLN02891 313 EAYRLAVRADPVSAFGGIV------------------------------------------------------------- 331 (547)
T ss_pred HHHHHHHhcCCccccCCEE-------------------------------------------------------------
Confidence 8888888888888777777
Q ss_pred hhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhhhhccccccccccccccCCCC
Q psy2261 383 ALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDM 462 (857)
Q Consensus 383 ~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (857)
T Consensus 332 -------------------------------------------------------------------------------- 331 (547)
T PLN02891 332 -------------------------------------------------------------------------------- 331 (547)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCCcccccCceeeeccccCHHHH
Q psy2261 463 DTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTA 542 (857)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~DpvSAFGgiIA~Nr~vD~~tA 542 (857)
||||+||.+||
T Consensus 332 ---------------------------------------------------------------------A~Nr~vd~~~A 342 (547)
T PLN02891 332 ---------------------------------------------------------------------AFNCEVDEDLA 342 (547)
T ss_pred ---------------------------------------------------------------------EEcCccCHHHH
Confidence 77777777777
Q ss_pred HHhc----------cceEEEEEcCCCChhHHHHHHhc-cCCcEEEEEeCCCCCCCCceEEEEeeeEEEeecCCCCCCccc
Q psy2261 543 EVIG----------REVSDGIICPGITLGAREILEKK-KGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPEL 611 (857)
Q Consensus 543 ~~i~----------~~f~EvIIAP~fe~eALeiL~~K-KnlR~~iL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~ 611 (857)
++|. ++|+||||||+|+|||||||++| ||+| ||++++. .++.+++|+|.||+|+|++|...+++.+
T Consensus 343 ~~i~~~~~~~d~~~~~F~EvviAP~f~~eAleiL~~K~knlR--vL~~~~~-~~~~~~~r~v~GG~LvQ~~D~~~~~~~~ 419 (547)
T PLN02891 343 REIREFRSPTDGETRMFYEIVVAPKYTEKGLEVLKGKSKTLR--ILEAKPR-KKGRLSLRQVGGGWLAQDSDDLTPEDIT 419 (547)
T ss_pred HHHHhhccccccccceeEEEEEcCCCCHHHHHHHHhcCCCEE--EEEecCC-CCCCeEEEEEeeEEEEECCCCCCCCHHH
Confidence 7777 79999999999999999999999 9999 7777432 2456899999999999999998888778
Q ss_pred ccccccccCCCCHHHHHhhHHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhhhhhHHHHHHhhc
Q psy2261 612 FTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKY 691 (857)
Q Consensus 612 ~~~vvT~~~~~~~~~~~dl~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DLl~a~~~~k~ 691 (857)
| ++||+++| |++|++||.|||+||||||
T Consensus 420 ~-~vVT~~~P-t~~e~~DL~FAwkvvK~vK-------------------------------------------------- 447 (547)
T PLN02891 420 F-TVVSEKVP-TESELEDAKFAWLCVKHVK-------------------------------------------------- 447 (547)
T ss_pred C-eecCCCCc-CHHHHHHHHHHHHHHhhcc--------------------------------------------------
Confidence 8 79999984 8777777777777766655
Q ss_pred cccceEEEeeCCeEEeecCCCCchhHHHHHHHHhhhhhhhhhcCCcccccccccccccccchhhhhhccCCcCCCCchhh
Q psy2261 692 TQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKT 771 (857)
Q Consensus 692 vkSNsIv~akdg~tvGIGaGQ~sRV~~~riA~~KA~~~~lr~h~~v~~~~f~~~~~r~e~~n~i~~~~~~~~~~~~~~~~ 771 (857)
||||||+|||||||||+||||||||+|+|++||+.
T Consensus 448 --SNAIV~akd~~tvGIGaGQ~sRVda~~iA~~kA~~------------------------------------------- 482 (547)
T PLN02891 448 --SNAIVVAKNNRMLGMGSGQPNRVESLRIALEKAGE------------------------------------------- 482 (547)
T ss_pred --CceEEEEeCCeEEEecCCCccHHHHHHHHHHHhcc-------------------------------------------
Confidence 55679999999999999999999999999999941
Q ss_pred hhcccCCCCCCCCCHHHHHhhhhccCceEEeccccccCC--CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEE
Q psy2261 772 WESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFR--ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIH 849 (857)
Q Consensus 772 ~~~~~~~~~~~~~t~~er~~~~~~l~G~VlaSDAFFPF~--D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvF 849 (857)
.++|+||||||||||+ |+||.|+++||++||||||||||+|||++||||||+|||
T Consensus 483 -----------------------~~~G~vlASDAFFPF~~~D~ve~aa~~Gv~aIIQPGGSiRD~evI~aane~giaMvf 539 (547)
T PLN02891 483 -----------------------EAKGAALASDAFFPFAWNDAVEEACQAGVKVIAEPGGSMRDQDAIDCCNKYGVALLF 539 (547)
T ss_pred -----------------------ccCCeEEEecccCCCCCCccHHHHHHhCCEEEECCCCCCCcHHHHHHHHHhCCEEEE
Confidence 1679999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy2261 850 HNTRLFHH 857 (857)
Q Consensus 850 TG~RhFrH 857 (857)
||+|||||
T Consensus 540 Tg~RhFrH 547 (547)
T PLN02891 540 TGVRHFRH 547 (547)
T ss_pred CCCCCCCC
Confidence 99999999
No 4
>KOG2555|consensus
Probab=100.00 E-value=3.8e-187 Score=1490.32 Aligned_cols=587 Identities=63% Similarity=0.997 Sum_probs=565.9
Q ss_pred CCccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCC
Q psy2261 4 NNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNT 83 (857)
Q Consensus 4 ~~~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~ 83 (857)
+..+.+|||||||+||++||+.|.++|++|+||||||+.|+++|++|+.|+++|+||||||||||||||.||||||+|+.
T Consensus 2 ~~~k~AllSVsDKtgLl~La~gL~~~g~~lvaSGGTAk~lrdaG~~V~dVs~iT~fPEMLgGRVKTLHPaVHgGILARdi 81 (588)
T KOG2555|consen 2 SGTKLALLSVSDKTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEITHFPEMLGGRVKTLHPAVHGGILARDI 81 (588)
T ss_pred CCceEEEEEeecccChHHHHhHHHhcCcEEEecCchHHHHHhCCCccchHHhhcCChHHhCCcccccccccccceeeccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHcC
Q psy2261 84 DSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEAS 163 (857)
Q Consensus 84 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~~ 163 (857)
++|+++|++|||..||+||||||||.+||+++|+|++|++||||||||||||||||||++|+|||||.||+.++++|+.
T Consensus 82 esd~kdL~e~~i~~vdvVVcNLYPF~etVa~pgvtveeaVEnIDIGGvTLLRAAAKNH~rVtiv~dp~DY~~vlsel~~- 160 (588)
T KOG2555|consen 82 ESDEKDLKEQGIDKVDVVVCNLYPFKETVAKPGVTVEEAVENIDIGGVTLLRAAAKNHARVTIVCDPADYDAVLSELKS- 160 (588)
T ss_pred chhHHHHHHcCCCeEEEEEEeccchHhhhcCCCCcHHHHhhhcccccHHHHHHHHhcCCcEEEEechhHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhHHHHhhhhhccCCcccccccccCCCCCCcccccccccCccchhhhcCCCCCCChh
Q psy2261 164 PTKETSEEIRKKLALKAFTHTSDYDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLL 243 (857)
Q Consensus 164 ~~G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl~~~~~~~~~~~~LRYGENPHQ~~AalY~~~~~~~~~~L~Gk~SyNNil 243 (857)
++++...|.+.|+|||+||+.||++|++||.+++.....+..||||+||||+||++|...+.+++++|||.|+|||++
T Consensus 161 --~~~~~d~~~r~aLKaf~Hta~yD~Aisd~frKQy~~gvsq~slRYg~npHQ~paql~~~q~~lp~~vl~gspgyiNl~ 238 (588)
T KOG2555|consen 161 --SEISQDLRNRRALKAFEHTASYDAAISDYFRKQYSEGVSQLSLRYGMNPHQKPAQLYVVQGKLPFKVLCGSPGYINLL 238 (588)
T ss_pred --cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcchhcCCCcccChhhHhhhcCCCceEEecCCCchhhHH
Confidence 456666666666699999999999999999999887888999999999999999999877889999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCChhhhhhhhhcccccCCchHHHHHHHHHcCCCccCCCCEEec
Q psy2261 244 DALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIAL 323 (857)
Q Consensus 244 DadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~~~~~~~~~~~~~~~~~~~l~~Ay~~A~~~Dp~SAFGgIIa~ 323 (857)
|++++|++|+||+..++-|+|+++||.||||+|+|-||+|.|.+-+||+|+++ .++++.||+||+.+||||+||++|
T Consensus 239 DAln~w~lvkel~~~l~~paaasfKHvsPaGaAvg~pls~~e~kv~~v~Di~e-ltpla~AYarArgADrmSsFGdfv-- 315 (588)
T KOG2555|consen 239 DALNSWPLVKELSENLGLPAAASFKHVSPAGAAVGLPLSDVEAKVYFVDDIYE-LTPLACAYARARGADRMSSFGDFV-- 315 (588)
T ss_pred hhhcchhhhhHHHhhcCCcccceecccCcccccccCccchhhhheeehhhhhh-cchHHHHHHHHhcCCccccccCeE--
Confidence 99999999999999999999999999999999999999999999999999887 688888888888888888888888
Q ss_pred CCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCchhcccchhHHHHhhhccccceEEEeeCCeEEee
Q psy2261 324 SDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGI 403 (857)
Q Consensus 324 n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgi 403 (857)
T Consensus 316 -------------------------------------------------------------------------------- 315 (588)
T KOG2555|consen 316 -------------------------------------------------------------------------------- 315 (588)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhhhhccccccccccccccCCCCCccccccccCCCCCCCCChhh
Q psy2261 404 GAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKE 483 (857)
Q Consensus 404 G~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (857)
T Consensus 316 -------------------------------------------------------------------------------- 315 (588)
T KOG2555|consen 316 -------------------------------------------------------------------------------- 315 (588)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCCcccccCceeeeccccCHHHHHHhccceEEEEEcCCCChhHH
Q psy2261 484 KADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAR 563 (857)
Q Consensus 484 ~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~DpvSAFGgiIA~Nr~vD~~tA~~i~~~f~EvIIAP~fe~eAL 563 (857)
|+|..||..||+.|+++.+++||||+||||||
T Consensus 316 ------------------------------------------------Als~~vDv~tAriIsrevsDGviApgYepeaL 347 (588)
T KOG2555|consen 316 ------------------------------------------------ALSDVVDVVTARIISREVSDGVIAPGYEPEAL 347 (588)
T ss_pred ------------------------------------------------EeeeehhhhhHhHhhccccCceecCCCCHHHH
Confidence 99999999999999999999999999999999
Q ss_pred HHHHhccCCcEEEEEeCCCCCCCCceEEEEeeeEEEeecCCCCCCcccccccccccCCCCHHHHHhhHHHHHHhhhcccc
Q psy2261 564 EILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSN 643 (857)
Q Consensus 564 eiL~~KKnlR~~iL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vvT~~~~~~~~~~~dl~fa~~v~k~~ksn 643 (857)
|||+||||+.||||+++|+|.|...|.|+|+|+.|+|.||+..++...|.+||++++++|
T Consensus 348 eiL~KkK~g~yciLq~dpny~p~~~e~rqv~G~~L~Qkrnda~i~~s~F~~vvsknk~l~-------------------- 407 (588)
T KOG2555|consen 348 EILSKKKNGKYCILQMDPNYVPGEVERRQVFGLTLQQKRNDAVIDQSLFSNVVSKNKDLP-------------------- 407 (588)
T ss_pred HHHhcccCCceEEEEeCCCcCcccceeeeeeeEEeeeecCcCcchhHHHHHHhhcCCCcc--------------------
Confidence 999999999999999999999989999999999999999999999999999999998755
Q ss_pred chhhcccCceecccCCccccchhccccCCCCchhhhhhhHHHHHHhhccccceEEEeeCCeEEeecCCCCchhHHHHHHH
Q psy2261 644 SVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAG 723 (857)
Q Consensus 644 aiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DLl~a~~~~k~vkSNsIv~akdg~tvGIGaGQ~sRV~~~riA~ 723 (857)
|+++.||+|||+++||||||||||+||||+||||+||||||+|+|+|+
T Consensus 408 --------------------------------e~a~~Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqsRihctRlAg 455 (588)
T KOG2555|consen 408 --------------------------------ESALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCTRLAG 455 (588)
T ss_pred --------------------------------hHHHHHHHHHHHhhhhhccccEEEEeCCEEEeecCCCccceeeeeccc
Confidence 677888999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhcCCcccccccccccccccchhhhhhccCCcCCCCchhhhhcccCCCCCCCCCHHHHHhhhhccCceEEec
Q psy2261 724 DKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVAS 803 (857)
Q Consensus 724 ~KA~~~~lr~h~~v~~~~f~~~~~r~e~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~er~~~~~~l~G~VlaS 803 (857)
+||++|||||||+|++|+|++|+||+|++|+||+|+.|+...+++...|++.|+ +.|+|+|.+||.+|+++++|++|+|
T Consensus 456 dkadnwwlr~hp~vl~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe-~~p~~~t~~e~~ewl~~l~~v~l~S 534 (588)
T KOG2555|consen 456 DKADNWWLRQHPKVLGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFE-EVPEPLTKEERKEWLEKLKGVSLSS 534 (588)
T ss_pred ccccchhhhcCchhhhhhhhhcccchhhccchhhhcccccccCcchhhhhhhhh-hcccccChHHHHHHHHHhcCceecc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCCCCC
Q psy2261 804 DAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFHH 857 (857)
Q Consensus 804 DAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~RhFrH 857 (857)
||||||+|+|++|.++||++|..||||++|+.||++|||+||.|++|..|||||
T Consensus 535 DAFFPF~Dnv~ra~qsGv~yiaaP~GSv~D~~v~~a~d~~~iv~~~t~lRlFhH 588 (588)
T KOG2555|consen 535 DAFFPFPDNVYRAVQSGVKYIAAPSGSVMDKVVIDACDEFGIVLAETNLRLFHH 588 (588)
T ss_pred cccccCchHHHHHHhcCCeEEecCCCcchhHHHHHHHHhhCeEEEecchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999
No 5
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=100.00 E-value=3.3e-179 Score=1483.39 Aligned_cols=497 Identities=42% Similarity=0.640 Sum_probs=455.9
Q ss_pred CCccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC-
Q psy2261 4 NNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN- 82 (857)
Q Consensus 4 ~~~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~- 82 (857)
.++++|||||+||++++++|+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+|+
T Consensus 2 ~~~~~aLISVsDK~~iv~lAk~L~~lGfeI~AT~GTak~L~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa~r~ 81 (513)
T PRK00881 2 RMIKRALISVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARRD 81 (513)
T ss_pred CCcCEEEEEEeCcccHHHHHHHHHHCCCEEEEcchHHHHHHHCCCeeEEeecccCCchhcCCccccCCchhhhhhccCCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHc
Q psy2261 83 TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEA 162 (857)
Q Consensus 83 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~ 162 (857)
+++|+++|++|||++|||||||||||++|+++++.+++++|||||||||||||||||||++|+|||||+||+.++++|+.
T Consensus 82 ~~~h~~~l~~~~i~~IDlVvvNLYPF~~tv~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~Vv~dp~dY~~v~~~l~~ 161 (513)
T PRK00881 82 NPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIENIDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELKA 161 (513)
T ss_pred CHHHHHHHHHcCCCceeEEEEeCcChHHHhccCCCCHHHHHhcccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhhHHHHhhhhhcc----CC-----cccccccccCCCCCCccccccccc----Cccc
Q psy2261 163 SPTKETSEEIRKKLALKAFTHTSDYDTNIVDYFRKQY----SP-----NEAQISLRYGMNPHQSPAQIFTTL----DKLP 229 (857)
Q Consensus 163 ~~~G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl~~~~----~~-----~~~~~~LRYGENPHQ~~AalY~~~----~~~~ 229 (857)
+|++|+++|++||.|||+|||+||++|++||++++ +. .++.+.|||||||||+ |+||... +..+
T Consensus 162 --~g~~s~~~R~~lA~kAF~~ta~YD~~I~~yl~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~-aa~Y~~~~~~~~~~~ 238 (513)
T PRK00881 162 --NGSTTLETRFRLAAKAFAHTAAYDAAIANYLTEQVGEEFPETLNLSFEKKQDLRYGENPHQK-AAFYRDPNAEGGVAT 238 (513)
T ss_pred --cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhcchhhcccccCCCCCCcC-ceeeeccCCcccccc
Confidence 48999999999999999999999999999997543 22 3788999999999999 7899764 2468
Q ss_pred hhhhcCCC-CCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCChhhhhhhhhcccccCCchHHHHHHHH
Q psy2261 230 IKVLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARA 308 (857)
Q Consensus 230 ~~~L~Gk~-SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~~~~~~~~~~~~~~~~~~~l~~Ay~~A 308 (857)
++|||||+ |||||+|+|+||++|+||+ +|+||||||+||||+|+| .++.+||++|
T Consensus 239 ~~ql~GK~lSyNN~lD~d~A~~~v~ef~----~pa~vivKH~nPCGvA~~--------------------~~~~~Ay~~A 294 (513)
T PRK00881 239 AEQLQGKELSYNNIADADAALELVKEFD----EPACVIVKHANPCGVAVG--------------------DTILEAYDKA 294 (513)
T ss_pred cceecCCccCCcchhchHHHHHHHHhcC----CCeEEEEecCCcceeecC--------------------CCHHHHHHHH
Confidence 89999997 9999999999999999997 599999999999999999 3677777777
Q ss_pred HcCCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCchhcccchhHHHHhhhccc
Q psy2261 309 RGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELPEFAIRDLTVATIALKYTQ 388 (857)
Q Consensus 309 ~~~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~~~~~~dl~~a~~~~~~~k 388 (857)
|+|||+|||||||
T Consensus 295 ~~~Dp~SaFGgiv------------------------------------------------------------------- 307 (513)
T PRK00881 295 YACDPVSAFGGII------------------------------------------------------------------- 307 (513)
T ss_pred HhcCCccccCCEE-------------------------------------------------------------------
Confidence 7777777777777
Q ss_pred cceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhhhhccccccccccccccCCCCCccccc
Q psy2261 389 SNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWE 468 (857)
Q Consensus 389 sn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (857)
T Consensus 308 -------------------------------------------------------------------------------- 307 (513)
T PRK00881 308 -------------------------------------------------------------------------------- 307 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCCcccccCceeeeccccCHHHHHHhccc
Q psy2261 469 SFFDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGRE 548 (857)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~DpvSAFGgiIA~Nr~vD~~tA~~i~~~ 548 (857)
|+||+||.+||++|.++
T Consensus 308 ---------------------------------------------------------------a~N~~vd~~~A~~i~~~ 324 (513)
T PRK00881 308 ---------------------------------------------------------------AFNREVDAETAEAIHKI 324 (513)
T ss_pred ---------------------------------------------------------------EECCccCHHHHHHHHhh
Confidence 99999999999999999
Q ss_pred eEEEEEcCCCChhHHHHHHhccCCcEEEEEeCCCCCCCCceEEEEeeeEEEeecCCCCCCcccccccccccCCCCHHHHH
Q psy2261 549 VSDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIR 628 (857)
Q Consensus 549 f~EvIIAP~fe~eALeiL~~KKnlR~~iL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vvT~~~~~~~~~~~ 628 (857)
|+||||||+|+|||||||++|||+| +|++. .+.++.+++|+|.||+|+|++|...+++..| ++||+++ |+++|++
T Consensus 325 f~EviiAP~~~~eAl~iL~~KknlR--~l~~~-~~~~~~~~~r~v~Gg~LvQ~~d~~~~~~~~~-~vvT~~~-pt~~e~~ 399 (513)
T PRK00881 325 FLEVIIAPSFSEEALEILAKKKNLR--LLECP-FPGGWEGDFKSVSGGLLVQDRDLGMVDPADL-KVVTKRQ-PTEQELK 399 (513)
T ss_pred eEEEEEcCCCCHHHHHHHhhCCCeE--EEEec-CCCCCCeeEEEEeeeEEEECCCCCCcCcccc-eeecCCC-CCHHHHH
Confidence 9999999999999999999999999 66653 2324468999999999999999988887788 7999998 4877777
Q ss_pred hhHHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhhhhhHHHHHHhhccccceEEEeeCCeEEee
Q psy2261 629 DLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGI 708 (857)
Q Consensus 629 dl~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DLl~a~~~~k~vkSNsIv~akdg~tvGI 708 (857)
||.|||+||||+| ||+||++|||+||||
T Consensus 400 Dl~faw~v~K~vk----------------------------------------------------SNaIVvvkd~~~vgI 427 (513)
T PRK00881 400 DLLFAWKVVKHVK----------------------------------------------------SNAIVYAKDGQTVGI 427 (513)
T ss_pred HHHHHHHHHHhcC----------------------------------------------------CCcEEEEeCCeEEEE
Confidence 7777777766654 556799999999999
Q ss_pred cCCCCchhHHHHHHHHhhhhhhhhhcCCcccccccccccccccchhhhhhccCCcCCCCchhhhhcccCCCCCCCCCHHH
Q psy2261 709 GAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKE 788 (857)
Q Consensus 709 GaGQ~sRV~~~riA~~KA~~~~lr~h~~v~~~~f~~~~~r~e~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 788 (857)
|+||||||+|+++|++||++| +
T Consensus 428 gaGQ~sRvd~t~~Ai~rag~~-------------------------------~--------------------------- 449 (513)
T PRK00881 428 GAGQMSRVDSARIAIEKAGDA-------------------------------G--------------------------- 449 (513)
T ss_pred CCCCcchHHHHHHHHHHHHHh-------------------------------c---------------------------
Confidence 999999999999999999753 1
Q ss_pred HHhhhhccCceEEeccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCCCCC
Q psy2261 789 KADFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFHH 857 (857)
Q Consensus 789 r~~~~~~l~G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~RhFrH 857 (857)
.+++|+||+|||||||+|+|+.|+++||++|||||||+||+|||++||||||+|||||+|||||
T Consensus 450 -----~~~~gav~aSDafFPf~Dtie~aa~~Gv~aIiqPgGSirD~evI~aAne~gIamvfTg~RhF~H 513 (513)
T PRK00881 450 -----LDLKGAVLASDAFFPFRDGVEAAAKAGITAIIQPGGSIRDEEVIAAADEHGIAMVFTGVRHFRH 513 (513)
T ss_pred -----cCcCCeEEEeeCCCCchhHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHcCCEEEECCCCCCCC
Confidence 1267999999999999999999999999999999999999999999999999999999999999
No 6
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=100.00 E-value=2.1e-134 Score=1086.94 Aligned_cols=388 Identities=57% Similarity=0.947 Sum_probs=348.2
Q ss_pred ccccccCCCCCCcccccccccCccchhhhcCCCCCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCChh
Q psy2261 205 QISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDP 284 (857)
Q Consensus 205 ~~~LRYGENPHQ~~AalY~~~~~~~~~~L~Gk~SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~~~ 284 (857)
++.|||||||||++|++|...+..+++|||||+|||||+|+|+||++|+||+.++++|+||||||+||||+|++.+|++.
T Consensus 3 ~~~LRYGeNPHQk~Aa~y~~~~~~~~~~L~GklSynNilDad~A~~lv~ef~~~~~~paavivKH~nPCG~A~~~~l~~~ 82 (390)
T PRK07106 3 ELELKYGCNPNQKPARIFMKEGELPIEVLNGRPGYINFLDALNSWQLVKELKEATGLPAAASFKHVSPAGAAVGLPLSDT 82 (390)
T ss_pred CCCccCCCCcCcccceeeecCCccCceEecCcCCcchHHHHHHHHHHHHHhhhccCCCcEEeeeccCcceeeecCCcchh
Confidence 57899999999977899987667899999999999999999999999999987777899999999999999999989988
Q ss_pred hhhhhhhcccccCCchHHHHHHHHHcCCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCce
Q psy2261 285 EIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKY 364 (857)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~Ay~~A~~~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~ 364 (857)
+.+++||.+++ .+++++
T Consensus 83 ~~~~~~~~~~~--~~~~~~------------------------------------------------------------- 99 (390)
T PRK07106 83 LKKIYFVDDME--LSPLAC------------------------------------------------------------- 99 (390)
T ss_pred hhheeeccccc--ccHHHH-------------------------------------------------------------
Confidence 88888887652 234444
Q ss_pred eeecCchhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhhhh
Q psy2261 365 VILELPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRA 444 (857)
Q Consensus 365 ~~l~~~~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~~~ 444 (857)
T Consensus 100 -------------------------------------------------------------------------------- 99 (390)
T PRK07106 100 -------------------------------------------------------------------------------- 99 (390)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCCCCccccccccCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCCcc
Q psy2261 445 EKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRM 524 (857)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~Dpv 524 (857)
||.+||+|||+
T Consensus 100 ---------------------------------------------------------------------Ay~rA~~~Dp~ 110 (390)
T PRK07106 100 ---------------------------------------------------------------------AYARARGADRM 110 (390)
T ss_pred ---------------------------------------------------------------------HHHHHHhcCCc
Confidence 55555555555
Q ss_pred cccCceeeeccccCHHHHHHhccceEEEEEcCCCChhHHHHHHhccCCcEEEEEeCCCCCCCCceEEEEeeeEEEeecCC
Q psy2261 525 SSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNN 604 (857)
Q Consensus 525 SAFGgiIA~Nr~vD~~tA~~i~~~f~EvIIAP~fe~eALeiL~~KKnlR~~iL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~ 604 (857)
||||||||+|++||.+||++|+++|+||||||+|||||||||++|||++++||++++.+.++.+++|+|+||+|+|++|.
T Consensus 111 SaFGgivA~N~~vD~~tA~~i~~~f~EvIIAP~f~~eALeiL~~KKn~nlriL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~ 190 (390)
T PRK07106 111 SSYGDFAALSDVCDVETAKLLKREVSDGIIAPGYTPEALEILKAKKKGNYNIIKIDPNYEPAPIETKDVFGITFEQGRNE 190 (390)
T ss_pred cccCCEEEECCccCHHHHHHHHhhEEEEEEcCCCCHHHHHHHHhCcCCceEEEEcCCCCCCCceEEEEEeeEEEEECCCC
Confidence 55555559999999999999999999999999999999999999997666699997666567799999999999999999
Q ss_pred CCCCcccccccccccCCCCHHHHHhhHHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhhhhhHH
Q psy2261 605 FNVTPELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTV 684 (857)
Q Consensus 605 ~~~~~~~~~~vvT~~~~~~~~~~~dl~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DLl~ 684 (857)
..++++.|+++||+.+.||++| ++||+|
T Consensus 191 ~~~~~~~~~~vVT~~~~pt~~e----------------------------------------------------~~DL~f 218 (390)
T PRK07106 191 LKIDEDLLKNIVTENKELPDEA----------------------------------------------------KRDLII 218 (390)
T ss_pred CCCCHHHhhcccCCCCCcCHHH----------------------------------------------------HHHHHH
Confidence 8888778878999833346554 455555
Q ss_pred HHHHhhccccceEEEeeCCeEEeecCCCCchhHHHHHHHHhhhhhhhhhcCCcccccccccccccccchhhhhhccCCcC
Q psy2261 685 ATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIG 764 (857)
Q Consensus 685 a~~~~k~vkSNsIv~akdg~tvGIGaGQ~sRV~~~riA~~KA~~~~lr~h~~v~~~~f~~~~~r~e~~n~i~~~~~~~~~ 764 (857)
||+++||||||||||+|||||||||+||||||||+|+|++||+.||||+||++.+++|+.+.+|++|.|+|+.|+.|+++
T Consensus 219 Aw~vvK~vkSNaIv~akdg~tvGIGaGQ~SRVd~~rlA~~KA~~~~lr~hp~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 298 (390)
T PRK07106 219 ALITLKYTQSNSVCYAKDGQAIGIGAGQQSRIHCTRLAGNKADIWYLRQHPKVLNLPFKEGIRRPDRDNAIDVYLSDDYM 298 (390)
T ss_pred HHHHHHhcccceEEEEeCCeEEEeCCCCcchHHHHHHHHHHhcchhhhccchhhcccccccccccccccchhhhhccchh
Confidence 55556667777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccCCCCCCCCCHHHHHhhhhccCceEEeccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCC
Q psy2261 765 KDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHK 844 (857)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~t~~er~~~~~~l~G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~g 844 (857)
.+++.+.|+.+|+ ++|+++|++||.+|+.+++|+||||||||||||+||+|+++||+||||||||+||+|||++|||||
T Consensus 299 ~~~~~~~~~~~f~-~~p~~lt~~er~~~~~~l~G~vlASDAFFPF~D~Id~Aa~~GV~aIiQPGGSiRD~evI~aane~g 377 (390)
T PRK07106 299 DVLADGVWQQFFT-EKPEPLTREEKRAWLATLTGVALGSDAFFPFGDNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYG 377 (390)
T ss_pred chhhhhhhhhhcc-cCcccccHHHHHHHhhhcCCeEEEecccCCCCchHHHHHHcCCEEEECCCCCCCcHHHHHHHHHhC
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCC
Q psy2261 845 LTLIHHNTRLFHH 857 (857)
Q Consensus 845 IaMvFTG~RhFrH 857 (857)
|+|||||+|||||
T Consensus 378 iaMvfTg~RhF~H 390 (390)
T PRK07106 378 MTMAFTGVRLFHH 390 (390)
T ss_pred CEEEECCCCCCCC
Confidence 9999999999999
No 7
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=100.00 E-value=7.3e-103 Score=830.40 Aligned_cols=297 Identities=43% Similarity=0.619 Sum_probs=264.0
Q ss_pred HHhCCCceEEEeCCccHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhhhhHHHHhhhhhcc----CC-----cccccc
Q psy2261 137 AAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDTNIVDYFRKQY----SP-----NEAQIS 207 (857)
Q Consensus 137 AAKN~~~V~Vv~dP~DY~~v~~el~~~~~G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl~~~~----~~-----~~~~~~ 207 (857)
|||||++|+|||||+||+.++++|+. +|.+|+++|++||.|||+|||.||++|++||++.. +. .++.+.
T Consensus 1 AAKN~~~V~Vv~dP~dY~~vl~el~~--~g~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~~~~p~~~~~~~~k~~~ 78 (311)
T smart00798 1 AAKNHKDVTVVVDPADYAEVLEELKA--GGGLSLETRKRLAAKAFAHTAAYDAAISNYLAKQLASEFPETLTLSFEKKQD 78 (311)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhcceecCc
Confidence 79999999999999999999999987 58999999999999999999999999999997532 22 378899
Q ss_pred cccCCCCCCcccccccccC----ccchhhhcCCC-CCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccCCC
Q psy2261 208 LRYGMNPHQSPAQIFTTLD----KLPIKVLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLT 282 (857)
Q Consensus 208 LRYGENPHQ~~AalY~~~~----~~~~~~L~Gk~-SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~l~ 282 (857)
|||||||||+ |+||...+ ..+++|||||+ |||||+|+|+||++|+||+ +|+||||||+||||+|+|
T Consensus 79 LRYGENPHQ~-Aa~Y~~~~~~~~~~~~~qL~GKeLSyNN~lD~daA~~lv~ef~----~pa~vivKH~nPCGvA~~---- 149 (311)
T smart00798 79 LRYGENPHQK-AAFYTDPDALGGIATAKQLQGKELSYNNILDADAALELVKEFD----EPACVIVKHANPCGVAVG---- 149 (311)
T ss_pred cCCCCCcCcc-eeEEeccCcccccccchhhcCcccCCcchhchHHHHHHHHhcC----CCcEEEEecCCcceeecC----
Confidence 9999999999 89997642 35789999997 9999999999999999997 599999999999999999
Q ss_pred hhhhhhhhhcccccCCchHHHHHHHHHcCCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCC
Q psy2261 283 DPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGG 362 (857)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~Ay~~A~~~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~ 362 (857)
+++.+||.+||+|||+|||||||
T Consensus 150 ----------------~~~~~Ay~kA~~~Dp~SaFGGIv----------------------------------------- 172 (311)
T smart00798 150 ----------------DTLAEAYRKAYAADPVSAFGGII----------------------------------------- 172 (311)
T ss_pred ----------------CCHHHHHHHHHhcCCccccCCEE-----------------------------------------
Confidence 47778888888777777777777
Q ss_pred ceeeecCchhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhhhh
Q psy2261 363 KYVILELPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVK 442 (857)
Q Consensus 363 r~~~l~~~~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~~~ 442 (857)
T Consensus 173 -------------------------------------------------------------------------------- 172 (311)
T smart00798 173 -------------------------------------------------------------------------------- 172 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccccccccccccCCCCCccccccccCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhcCC
Q psy2261 443 RAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGAD 522 (857)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~~D 522 (857)
T Consensus 173 -------------------------------------------------------------------------------- 172 (311)
T smart00798 173 -------------------------------------------------------------------------------- 172 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCceeeeccccCHHHHHHhccceEEEEEcCCCChhHHHHHHhccCCcEEEEEeCCCCCCCCceEEEEeeeEEEeec
Q psy2261 523 RMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKR 602 (857)
Q Consensus 523 pvSAFGgiIA~Nr~vD~~tA~~i~~~f~EvIIAP~fe~eALeiL~~KKnlR~~iL~~~~~~~~~~~e~r~v~Gg~L~Q~~ 602 (857)
|+||+||.+||++|+++|+||||||+|+|||||||++|||+| ||++++.+.++.+++|+|.||+|+|++
T Consensus 173 ---------a~Nr~vd~~~A~~i~~~F~EviiAP~f~~eAleiL~~KKnlR--ll~~~~~~~~~~~~~r~v~GG~LvQ~~ 241 (311)
T smart00798 173 ---------AFNRPVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNLR--LLELGPLPDPDGLEFKSVSGGLLVQDR 241 (311)
T ss_pred ---------EECCccCHHHHHHHHhheEEEEEcCCCCHHHHHHHhhCCCEE--EEEeCCCCCCCceEEEEEeeEEEEECC
Confidence 999999999999999999999999999999999999999999 777754343457899999999999999
Q ss_pred CCCCCCcccccccccccCCCCHHHHHhhHHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhhhhh
Q psy2261 603 NNFNVTPELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDL 682 (857)
Q Consensus 603 d~~~~~~~~~~~vvT~~~~~~~~~~~dl~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~~DL 682 (857)
|...+++++| ++||+++ ||++|++||.|||+||||||
T Consensus 242 D~~~~~~~~~-~vvt~~~-pt~~e~~dL~FAwkv~k~vK----------------------------------------- 278 (311)
T smart00798 242 DNGGIDPEDL-KVVTKRQ-PTEEELKDLLFAWKVVKHVK----------------------------------------- 278 (311)
T ss_pred CCCCCCHHHC-EecCCCC-CCHHHHHHhHHHHHHHhhcc-----------------------------------------
Confidence 9988887788 7999987 48888887777777766665
Q ss_pred HHHHHHhhccccceEEEeeCCeEEeecCCCCchhHHHHHHHHhh
Q psy2261 683 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 726 (857)
Q Consensus 683 l~a~~~~k~vkSNsIv~akdg~tvGIGaGQ~sRV~~~riA~~KA 726 (857)
||||||+|||||||||+||||||||+|+|++||
T Consensus 279 -----------SNAIv~ak~~~tvGiGaGQ~sRVda~~iA~~kA 311 (311)
T smart00798 279 -----------SNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKA 311 (311)
T ss_pred -----------cceEEEEeCCeEEEecCCCccHHHHHHHHHhhC
Confidence 556689999999999999999999999999986
No 8
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=100.00 E-value=8.3e-103 Score=832.24 Aligned_cols=298 Identities=39% Similarity=0.578 Sum_probs=251.0
Q ss_pred HHhCCCceEEEeCCccHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhhhhHHHHhhhhhccC-----C-----ccccc
Q psy2261 137 AAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDTNIVDYFRKQYS-----P-----NEAQI 206 (857)
Q Consensus 137 AAKN~~~V~Vv~dP~DY~~v~~el~~~~~G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl~~~~~-----~-----~~~~~ 206 (857)
|||||++|+|||||+||+.|+++|+. +|++|+++|++||.|||+|||+||++|++||++++. . .++.+
T Consensus 1 AAKN~~~V~Vv~dP~dY~~vl~el~~--~G~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~~~~~p~~~~~~~~~~~ 78 (315)
T PF01808_consen 1 AAKNYKDVTVVVDPADYDEVLEELKS--NGEISLETRRRLAAKAFAHTAAYDAAIANYLSEQFGAEEFPETLTLSLKKVQ 78 (315)
T ss_dssp HHHTTTT-EEE-SGGGHHHHHHHHHT--TTSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTS-SEEEEEEEEEE
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhchhhhHhh
Confidence 89999999999999999999999997 699999999999999999999999999999987543 2 38899
Q ss_pred ccccCCCCCCcccccccccC-----ccchhhhcCCC-CCCChhhhHHHHHHHHHHHhhcCCCcEEEeccCCcceeeeccC
Q psy2261 207 SLRYGMNPHQSPAQIFTTLD-----KLPIKVLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRR 280 (857)
Q Consensus 207 ~LRYGENPHQ~~AalY~~~~-----~~~~~~L~Gk~-SyNNilDadaA~~lv~e~~~~~~~paavivKH~nPcG~A~~~~ 280 (857)
.|||||||||+ |+||.... ..+++|||||+ |||||+|+|+||++|+||.. +|+||||||+||||+|+|
T Consensus 79 ~LRYGENPHQ~-Aa~Y~~~~~~~~~~~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~---~pa~vivKH~nPCGvA~~-- 152 (315)
T PF01808_consen 79 DLRYGENPHQK-AAFYREPSEEEGGLAPAEQLQGKELSYNNLLDADAAWRLVREFDD---EPACVIVKHNNPCGVAIG-- 152 (315)
T ss_dssp EESSSSSTTS--EEEEECTTSSSE-GHSEEEEESS---HHHHHHHHHHHHHHHCCCH---SCEEEEEETTEEEEEEEE--
T ss_pred ccccCCCCCch-hhheecCCcccccccchHHhcCcCcccCCchhHHHHHHHHHHcCC---CCeEEEEecCccceeEec--
Confidence 99999999998 78997652 35789999995 99999999999999999974 699999999999999999
Q ss_pred CChhhhhhhhhcccccCCchHHHHHHHHHcCCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhc
Q psy2261 281 LTDPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKK 360 (857)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~l~~Ay~~A~~~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK 360 (857)
+++.+||++||+|||+|||||||
T Consensus 153 ------------------~~~~eAy~~A~~~Dp~SaFGGIv--------------------------------------- 175 (315)
T PF01808_consen 153 ------------------DTLLEAYEKAFACDPVSAFGGIV--------------------------------------- 175 (315)
T ss_dssp ------------------SHHHHHHHHHHHSTTTTTTTEEE---------------------------------------
T ss_pred ------------------CCHHHHHHHHHHhCcccccCCEE---------------------------------------
Confidence 47777777777777777777777
Q ss_pred CCceeeecCchhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCccchhhhhh
Q psy2261 361 GGKYVILELPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKG 440 (857)
Q Consensus 361 ~~r~~~l~~~~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~~~~~~~~~ 440 (857)
T Consensus 176 -------------------------------------------------------------------------------- 175 (315)
T PF01808_consen 176 -------------------------------------------------------------------------------- 175 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccccccccccccCCCCCccccccccCCCCCCCCChhhhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhc
Q psy2261 441 VKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARG 520 (857)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kh~npcg~a~~~~~~~~~~~~~eAy~kA~~ 520 (857)
T Consensus 176 -------------------------------------------------------------------------------- 175 (315)
T PF01808_consen 176 -------------------------------------------------------------------------------- 175 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCceeeeccccCHHHHHHhccceEEEEEcCCCChhHHHHHHhccCCcEEEEEeCCCC-CCCCceEEEEeeeEEE
Q psy2261 521 ADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEVDPNY-TPSPIERRQVFGLTLE 599 (857)
Q Consensus 521 ~DpvSAFGgiIA~Nr~vD~~tA~~i~~~f~EvIIAP~fe~eALeiL~~KKnlR~~iL~~~~~~-~~~~~e~r~v~Gg~L~ 599 (857)
|+||+||.+||++|.++|+||||||+|+||||+||++||||| ||+++... ..+.+++|+|.||+|+
T Consensus 176 -----------a~N~~vD~~~A~~i~~~F~EviiAP~f~~eAleiL~~KKnlR--ll~~~~~~~~~~~~~~r~v~GG~Lv 242 (315)
T PF01808_consen 176 -----------AFNRPVDEETAEEISEIFLEVIIAPDFTPEALEILKKKKNLR--LLKLPDPPNSKPELEFRSVDGGLLV 242 (315)
T ss_dssp -----------EESSEB-HHHHHHHCTS-EEEEEESEB-HHHHHHHHCTCCGE--EEEEEESTTC--SEEEEEETTEEEE
T ss_pred -----------EEcCccCHHHHHHHHhceEEEEEeCCCCHHHHHHHHhcCCeE--EEEecccccCCCCeEEEEEeccEEE
Confidence 999999999999999999999999999999999999999999 55554211 1237999999999999
Q ss_pred eecCCCCCCcccccccccccCCCCHHHHHhhHHHHHHhhhccccchhhcccCceecccCCccccchhccccCCCCchhhh
Q psy2261 600 QKRNNFNVTPELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAI 679 (857)
Q Consensus 600 Q~~d~~~~~~~~~~~vvT~~~~~~~~~~~dl~fa~~v~k~~ksnaiv~ak~~~~vgigaGQ~sRv~~~r~a~~~~~~~~~ 679 (857)
|++|...+++++| ++||+++| +++|++||.|||+||||||
T Consensus 243 Q~~D~~~~~~~~~-~vVT~~~P-t~~e~~dL~FAwkv~k~vK-------------------------------------- 282 (315)
T PF01808_consen 243 QDRDNALIDPDDW-KVVTKRQP-TEEELEDLLFAWKVVKHVK-------------------------------------- 282 (315)
T ss_dssp EE--SGGCSGGGG-EEESSS----HHHHHHHHHHHHHHHCSS--------------------------------------
T ss_pred EcCCCCCCCHHHC-eEecCCCC-CHHHHHHHHHHHHHHhhcc--------------------------------------
Confidence 9999988888888 79999985 8888877777777766655
Q ss_pred hhhHHHHHHhhccccceEEEeeCCeEEeecCCCCchhHHHHHHHHhh
Q psy2261 680 RDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 726 (857)
Q Consensus 680 ~DLl~a~~~~k~vkSNsIv~akdg~tvGIGaGQ~sRV~~~riA~~KA 726 (857)
||||||+|||||||||+||||||||+|||++||
T Consensus 283 --------------SNAIv~ak~~~tvGIGaGQ~sRVda~~iA~~KA 315 (315)
T PF01808_consen 283 --------------SNAIVLAKDGQTVGIGAGQMSRVDAARIAIEKA 315 (315)
T ss_dssp --------------SSEEEEEETTEEEEEEESSSSHHHHHHHHHHHH
T ss_pred --------------cceEEEEeCCeEEEeCCCCcchHHHHHHHHhhC
Confidence 556799999999999999999999999999997
No 9
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=100.00 E-value=2.5e-78 Score=604.51 Aligned_cols=186 Identities=54% Similarity=0.907 Sum_probs=182.1
Q ss_pred cEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC-Chh
Q psy2261 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN-TDS 85 (857)
Q Consensus 7 graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~-~~~ 85 (857)
+||||||+||++++++|+.|.++||+|+||+||+++|+++||+|+.|+|+||||||||||||||||+||||||+|+ +++
T Consensus 1 ~~vLISVsDK~~l~~lAk~L~~lGf~I~AT~GTAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~~ 80 (187)
T cd01421 1 KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNEE 80 (187)
T ss_pred CEEEEEEeCcccHHHHHHHHHHCCCEEEEccHHHHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCChh
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999965 799
Q ss_pred hHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHcCCC
Q psy2261 86 DQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPT 165 (857)
Q Consensus 86 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~~~~ 165 (857)
|+ +|++|||++|||||||||||++|+++++++++++|||||||||||||||||||++|+|||||+||+.++++|+. +
T Consensus 81 ~~-~~~~~~i~~idlVvvNlYpF~~~~~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~vv~dp~dY~~v~~~l~~--~ 157 (187)
T cd01421 81 HK-DLEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKS--N 157 (187)
T ss_pred HH-HHHHcCCCCeeEEEEcccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhcCCCeEEEcCHHHHHHHHHHHHh--c
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy2261 166 KETSEEIRKKLALKAFTHTSDYDTNIVDYF 195 (857)
Q Consensus 166 G~~s~~~R~~LA~kAF~~tA~YD~aIa~yl 195 (857)
|++|+++|++||.|||+|||+||++|++||
T Consensus 158 g~~~~~~R~~lA~kAF~~ta~YD~~I~~~~ 187 (187)
T cd01421 158 GSISEETRRRLALKAFAHTAEYDAAISNYL 187 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999997
No 10
>KOG2555|consensus
Probab=100.00 E-value=3.6e-37 Score=333.12 Aligned_cols=175 Identities=62% Similarity=1.008 Sum_probs=160.8
Q ss_pred CCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecC--------------------------
Q psy2261 316 SFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEL-------------------------- 369 (857)
Q Consensus 316 AFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~-------------------------- 369 (857)
||-+++ |+-||..|+++..+.||||+|+++|||||+||||++|.+|+.
T Consensus 316 Als~~v------Dv~tAriIsrevsDGviApgYepeaLeiL~KkK~g~yciLq~dpny~p~~~e~rqv~G~~L~Qkrnda 389 (588)
T KOG2555|consen 316 ALSDVV------DVVTARIISREVSDGVIAPGYEPEALEILSKKKNGKYCILQMDPNYVPGEVERRQVFGLTLQQKRNDA 389 (588)
T ss_pred Eeeeeh------hhhhHhHhhccccCceecCCCCHHHHHHHhcccCCceEEEEeCCCcCcccceeeeeeeEEeeeecCcC
Confidence 466665 999999999999999999999999999999999999999864
Q ss_pred -----------------chhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcCCCc
Q psy2261 370 -----------------PEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNI 432 (857)
Q Consensus 370 -----------------~~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~~~~ 432 (857)
|+.++.||.+||++++|+|||+|.|+|||++||+|+|||||++|+|||.+||++|++||||..
T Consensus 390 ~i~~s~F~~vvsknk~l~e~a~~Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqsRihctRlAgdkadnwwlr~hp~v 469 (588)
T KOG2555|consen 390 VIDQSLFSNVVSKNKDLPESALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCTRLAGDKADNWWLRQHPKV 469 (588)
T ss_pred cchhHHHHHHhhcCCCcchHHHHHHHHHHHhhhhhccccEEEEeCCEEEeecCCCccceeeeecccccccchhhhcCchh
Confidence 233457999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhccccccccccccccCCCCCccccccccCCCCCCCCChhhhhhhhhhhcccchh
Q psy2261 433 TSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIK 497 (857)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kh~npcg 497 (857)
-+-||.|++||||++||||+|..||+|+||+...|||-|+.- |+|+|++|+-.++-...+..|+
T Consensus 470 l~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe~~-p~~~t~~e~~ewl~~l~~v~l~ 533 (588)
T KOG2555|consen 470 LGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFEEV-PEPLTKEERKEWLEKLKGVSLS 533 (588)
T ss_pred hhhhhhhcccchhhccchhhhcccccccCcchhhhhhhhhhc-ccccChHHHHHHHHHhcCceec
Confidence 999999999999999999999999999999999999999865 6899999997777666655553
No 11
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=100.00 E-value=4.3e-36 Score=325.39 Aligned_cols=184 Identities=57% Similarity=0.949 Sum_probs=170.5
Q ss_pred HHHcCCCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCc----------------
Q psy2261 307 RARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELP---------------- 370 (857)
Q Consensus 307 ~A~~~Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~---------------- 370 (857)
||++|||+||||||||+|++||.+||+.|++.|+||||||+|+++|||||++|||+|+++|+++
T Consensus 103 rA~~~Dp~SaFGgivA~N~~vD~~tA~~i~~~f~EvIIAP~f~~eALeiL~~KKn~nlriL~~~~~~~~~~~e~r~v~Gg 182 (390)
T PRK07106 103 RARGADRMSSYGDFAALSDVCDVETAKLLKREVSDGIIAPGYTPEALEILKAKKKGNYNIIKIDPNYEPAPIETKDVFGI 182 (390)
T ss_pred HHHhcCCccccCCEEEECCccCHHHHHHHHhhEEEEEEcCCCCHHHHHHHHhCcCCceEEEEcCCCCCCCceEEEEEeeE
Confidence 5899999999999999999999999999999999999999999999999999998777776541
Q ss_pred --------------hh-------------cccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccch
Q psy2261 371 --------------EF-------------AIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDN 423 (857)
Q Consensus 371 --------------~~-------------~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~ 423 (857)
.+ ..+||.|||++++|||||||+++|+|+|||||+||||||||+|+|++||.+
T Consensus 183 ~L~Q~~d~~~~~~~~~~~vVT~~~~pt~~e~~DL~fAw~vvK~vkSNaIv~akdg~tvGIGaGQ~SRVd~~rlA~~KA~~ 262 (390)
T PRK07106 183 TFEQGRNELKIDEDLLKNIVTENKELPDEAKRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQSRIHCTRLAGNKADI 262 (390)
T ss_pred EEEECCCCCCCCHHHhhcccCCCCCcCHHHHHHHHHHHHHHHhcccceEEEEeCCeEEEeCCCCcchHHHHHHHHHHhcc
Confidence 01 135889999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCccchhhhhhhhhhccccccccccccccCCCCCccccccccCCCCCCCCChhhhhhhhhhh
Q psy2261 424 WYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 491 (857)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 491 (857)
|+.|.||....-+|..++|+.+++|++|-|+.|..+.++....|+++|. -+|+|+|++|+.+++-..
T Consensus 263 ~~lr~hp~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~f~-~~p~~lt~~er~~~~~~l 329 (390)
T PRK07106 263 WYLRQHPKVLNLPFKEGIRRPDRDNAIDVYLSDDYMDVLADGVWQQFFT-EKPEPLTREEKRAWLATL 329 (390)
T ss_pred hhhhccchhhcccccccccccccccchhhhhccchhchhhhhhhhhhcc-cCcccccHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999 556799999997776554
No 12
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=99.93 E-value=7.8e-27 Score=250.31 Aligned_cols=97 Identities=42% Similarity=0.520 Sum_probs=85.4
Q ss_pred CccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCc----------------------------------
Q psy2261 325 DECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELP---------------------------------- 370 (857)
Q Consensus 325 ~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~---------------------------------- 370 (857)
++||.+||+.|.+.|+||||||+||++|+|||++|||+|++.+..+
T Consensus 179 ~~vD~~~A~~i~~~F~EviiAP~f~~eAleiL~~KKnlRll~~~~~~~~~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vV 258 (315)
T PF01808_consen 179 RPVDEETAEEISEIFLEVIIAPDFTPEALEILKKKKNLRLLKLPDPPNSKPELEFRSVDGGLLVQDRDNALIDPDDWKVV 258 (315)
T ss_dssp SEB-HHHHHHHCTS-EEEEEESEB-HHHHHHHHCTCCGEEEEEEESTTC--SEEEEEETTEEEEEE--SGGCSGGGGEEE
T ss_pred CccCHHHHHHHHhceEEEEEeCCCCHHHHHHHHhcCCeEEEEecccccCCCCeEEEEEeccEEEEcCCCCCCCHHHCeEe
Confidence 4569999999999999999999999999999999999999985321
Q ss_pred ------hhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhcccc
Q psy2261 371 ------EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 421 (857)
Q Consensus 371 ------~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~ 421 (857)
+...+||.|||++++++||||||++|+++|||||+||+|||||+|+|++||
T Consensus 259 T~~~Pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~sRVda~~iA~~KA 315 (315)
T PF01808_consen 259 TKRQPTEEELEDLLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMSRVDAARIAIEKA 315 (315)
T ss_dssp SSS---HHHHHHHHHHHHHHHCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEeCCCCcchHHHHHHHHhhC
Confidence 012468999999999999999999999999999999999999999999997
No 13
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=99.93 E-value=1.4e-26 Score=247.72 Aligned_cols=97 Identities=42% Similarity=0.574 Sum_probs=87.6
Q ss_pred CccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecC-c---------------------------------
Q psy2261 325 DECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEL-P--------------------------------- 370 (857)
Q Consensus 325 ~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~-~--------------------------------- 370 (857)
|+||.+||+.|.+.|+||||||+|+++|+|||++|||+|++.+.. +
T Consensus 176 r~vd~~~A~~i~~~F~EviiAP~f~~eAleiL~~KKnlRll~~~~~~~~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vvt 255 (311)
T smart00798 176 RPVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNLRLLELGPLPDPDGLEFKSVSGGLLVQDRDNGGIDPEDLKVVT 255 (311)
T ss_pred CccCHHHHHHHHhheEEEEEcCCCCHHHHHHHhhCCCEEEEEeCCCCCCCceEEEEEeeEEEEECCCCCCCCHHHCEecC
Confidence 356999999999999999999999999999999999999887521 0
Q ss_pred -----hhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhcccc
Q psy2261 371 -----EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 421 (857)
Q Consensus 371 -----~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~ 421 (857)
+...+||.|||++++++||||||++|++++||||+||+|||||+|+|++||
T Consensus 256 ~~~pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVda~~iA~~kA 311 (311)
T smart00798 256 KRQPTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKA 311 (311)
T ss_pred CCCCCHHHHHHhHHHHHHHhhcccceEEEEeCCeEEEecCCCccHHHHHHHHHhhC
Confidence 012368999999999999999999999999999999999999999999986
No 14
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=99.92 E-value=5.7e-26 Score=251.73 Aligned_cols=105 Identities=42% Similarity=0.566 Sum_probs=95.6
Q ss_pred CccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecC--c--------------------------------
Q psy2261 325 DECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEL--P-------------------------------- 370 (857)
Q Consensus 325 ~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~--~-------------------------------- 370 (857)
|+||.|||+.|.+.|+||||||+||++|+++|++|||+|++.+.- |
T Consensus 311 r~vD~etA~~i~~~F~EvIIAP~~~~~Al~il~kK~NlRvL~~~~~~~~~~~~~~k~v~GGlLvQ~~d~~~~~~~~~~vV 390 (515)
T COG0138 311 REVDVETAEAISKIFLEVIIAPSYTEEALEILAKKKNLRVLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMIDEAELKVV 390 (515)
T ss_pred CccCHHHHHHHHhhhEEEEEcCCCCHHHHHHHhhcCceEEEecCCCCCCCcceeEEEEeeeEEEEcccccccCccceeEe
Confidence 567999999999999999999999999999999999999888542 1
Q ss_pred ------hhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchhhhhcC
Q psy2261 371 ------EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHH 429 (857)
Q Consensus 371 ------~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~~~~~~ 429 (857)
+...+||.|+|+++++||||+|+++|+|+|||||+||+|||+|+|+|++||+++..+++
T Consensus 391 Tkr~pt~~e~~dl~Fawkv~k~vKSNaIv~akd~~TvGiGaGQ~sRV~sariA~~kA~~~~~~~~ 455 (515)
T COG0138 391 TKRQPTEQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLRAH 455 (515)
T ss_pred cCCCCCHHHHHHHHHHHHHHhHhccceEEEEcCCeEEEecCCccchHHHHHHHHHHHHHhhhhcc
Confidence 11246899999999999999999999999999999999999999999999999988776
No 15
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=99.91 E-value=6e-25 Score=246.44 Aligned_cols=99 Identities=43% Similarity=0.590 Sum_probs=90.2
Q ss_pred CccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecC-----ch----------------------------
Q psy2261 325 DECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEL-----PE---------------------------- 371 (857)
Q Consensus 325 ~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~-----~~---------------------------- 371 (857)
|+||.+||+.|.+.|+||||||+|+++|+|+|++|||+|++++.. |.
T Consensus 307 ~~vd~~~A~~i~~~F~EvviAP~f~~eAl~iL~~KKnlRll~~~~~~~~~~~~~~r~v~GG~LvQ~~d~~~~~~~~~~vV 386 (511)
T TIGR00355 307 RELDVPTAKAIVRQFLEVIIAPGYSAEALEILAKKKNLRVLILGIWANRVPELDFKRVNGGLLVQDRDDGMVDQSTLKVV 386 (511)
T ss_pred CccCHHHHHHHHhheEEEEEcCCCCHHHHHHHhhCCCEEEEEecCCCCCCCCceEEEEeeEEEEECCCCCCCChhhceee
Confidence 456999999999999999999999999999999999999998732 10
Q ss_pred -------hcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccch
Q psy2261 372 -------FAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDN 423 (857)
Q Consensus 372 -------~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~ 423 (857)
...+||.|||++++++||||||++|+|+|||||+||+|||||+|+|++||.+
T Consensus 387 t~~~pt~~e~~dL~FAwkv~k~vKSNAIv~akd~~tvGiGaGQ~sRV~s~riA~~kA~~ 445 (511)
T TIGR00355 387 TKRQPTEQELIDLLFAWKVAKHVKSNAIVYAKNNMTVGVGAGQMSRVGSAKIAGIKADD 445 (511)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHHHHHHHHHHHh
Confidence 1236899999999999999999999999999999999999999999999986
No 16
>PLN02891 IMP cyclohydrolase
Probab=99.89 E-value=6.3e-24 Score=238.61 Aligned_cols=98 Identities=30% Similarity=0.389 Sum_probs=88.0
Q ss_pred CccCchhhhhhc----------ccceeeeecCCCChhHHHHHHHh-cCCceeeecCc-----------------------
Q psy2261 325 DECDTSTAEVIG----------REVSDGIICPGITLGAREILEKK-KGGKYVILELP----------------------- 370 (857)
Q Consensus 325 ~~~d~e~A~~i~----------~~f~EViiAP~~~~~A~eiL~~k-K~~r~~~l~~~----------------------- 370 (857)
|+||.++|+.|. +.|+||||||+|+++|+|+|++| ||+|++.+..+
T Consensus 335 r~vd~~~A~~i~~~~~~~d~~~~~F~EvviAP~f~~eAleiL~~K~knlRvL~~~~~~~~~~~~r~v~GG~LvQ~~D~~~ 414 (547)
T PLN02891 335 CEVDEDLAREIREFRSPTDGETRMFYEIVVAPKYTEKGLEVLKGKSKTLRILEAKPRKKGRLSLRQVGGGWLAQDSDDLT 414 (547)
T ss_pred CccCHHHHHHHHhhccccccccceeEEEEEcCCCCHHHHHHHHhcCCCEEEEEecCCCCCCeEEEEEeeEEEEECCCCCC
Confidence 355999999999 89999999999999999999999 89998876210
Q ss_pred ---------------hhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccc
Q psy2261 371 ---------------EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVD 422 (857)
Q Consensus 371 ---------------~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~ 422 (857)
+...+||.|||+++++|||||||++|++++||||+||+|||||+|+|++||.
T Consensus 415 ~~~~~~~vVT~~~Pt~~e~~DL~FAwkvvK~vKSNAIV~akd~~tvGIGaGQ~sRVda~~iA~~kA~ 481 (547)
T PLN02891 415 PEDITFTVVSEKVPTESELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVESLRIALEKAG 481 (547)
T ss_pred CCHHHCeecCCCCcCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHHHHHHHHHhc
Confidence 1124689999999999999999999999999999999999999999999994
No 17
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=99.86 E-value=1.2e-22 Score=228.75 Aligned_cols=100 Identities=41% Similarity=0.552 Sum_probs=90.3
Q ss_pred CccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceeeecCc----------------------------------
Q psy2261 325 DECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELP---------------------------------- 370 (857)
Q Consensus 325 ~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~l~~~---------------------------------- 370 (857)
++||.+||+.|.+.|+||||||+|+++|+|+|++|||+|++.+.-+
T Consensus 311 ~~vd~~~A~~i~~~f~EviiAP~~~~eAl~iL~~KknlR~l~~~~~~~~~~~~r~v~Gg~LvQ~~d~~~~~~~~~~vvT~ 390 (513)
T PRK00881 311 REVDAETAEAIHKIFLEVIIAPSFSEEALEILAKKKNLRLLECPFPGGWEGDFKSVSGGLLVQDRDLGMVDPADLKVVTK 390 (513)
T ss_pred CccCHHHHHHHHhheEEEEEcCCCCHHHHHHHhhCCCeEEEEecCCCCCCeeEEEEeeeEEEECCCCCCcCcccceeecC
Confidence 3459999999999999999999999999999999999999987210
Q ss_pred ----hhcccchhHHHHhhhccccceEEEeeCCeEEeeccCCccchhhhhhhccccchh
Q psy2261 371 ----EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNW 424 (857)
Q Consensus 371 ----~~~~~dl~~a~~~~~~~ksn~v~~~k~~~~vgiG~Gq~~Rv~~~~lA~~k~~~~ 424 (857)
+...+||.|||++++++|||+||++|++++||||+||+|||+|+++|++||.++
T Consensus 391 ~~pt~~e~~Dl~faw~v~K~vkSNaIVvvkd~~~vgIgaGQ~sRvd~t~~Ai~rag~~ 448 (513)
T PRK00881 391 RQPTEQELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEKAGDA 448 (513)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEeCCeEEEECCCCcchHHHHHHHHHHHHHh
Confidence 012368999999999999999999999999999999999999999999999875
No 18
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=99.62 E-value=2.2e-16 Score=142.15 Aligned_cols=95 Identities=32% Similarity=0.463 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhhHHHHHhCCCCc
Q psy2261 18 GLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSDQSDMKKMNYDM 97 (857)
Q Consensus 18 glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h~~~l~~~~I~~ 97 (857)
+++++|+.|.++||+|+||+||+++|+++||+|..|.+.+++||.++||+ ++++.++++ .
T Consensus 1 e~~~~a~~l~~lG~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~-----------------~i~~~i~~~---~ 60 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRV-----------------QIMDLIKNG---K 60 (95)
T ss_dssp THHHHHHHHHHTTSEEEEEHHHHHHHHHTT--EEECCEEHSTG-GGTHCH-----------------HHHHHHHTT---S
T ss_pred CHHHHHHHHHHCCCEEEEChHHHHHHHHcCCCceeeeeecccCccCCchh-----------------HHHHHHHcC---C
Confidence 58999999999999999999999999999999999999999999999999 444555544 7
Q ss_pred eeEEEEecCChhhhccCCCCChhhhhhccccchHH
Q psy2261 98 VSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVT 132 (857)
Q Consensus 98 IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGps 132 (857)
|||||+++||+.......|..+..+..++||+++|
T Consensus 61 IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 61 IDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp EEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred eEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 89999999999887642355666666667776654
No 19
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=99.45 E-value=2.4e-13 Score=126.09 Aligned_cols=107 Identities=34% Similarity=0.432 Sum_probs=90.8
Q ss_pred EEEEec--CCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhh
Q psy2261 9 VILSVS--DKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSD 86 (857)
Q Consensus 9 aLISVs--DK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h 86 (857)
+||||+ ||+.++++|+.|.++||+|+||+||+++|+++||+|+.|.++.+ + -||.|...|..+
T Consensus 2 i~isv~d~~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~-----~-----g~~~i~~~i~~~----- 66 (112)
T cd00532 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHE-----D-----GEPTVDAAIAEK----- 66 (112)
T ss_pred EEEEEEcccHHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCC-----C-----CCcHHHHHHhCC-----
Confidence 799999 79999999999999999999999999999999999999999864 1 358787777653
Q ss_pred HHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHH
Q psy2261 87 QSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYA 154 (857)
Q Consensus 87 ~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~ 154 (857)
..||+||...+|... .+.+..|..|.|+|.+| +|.++|+++-+.
T Consensus 67 ---------g~idlVIn~~~~~~~-------------~~~~~dg~~iRR~A~~~--~Ip~~T~~~ta~ 110 (112)
T cd00532 67 ---------GKFDVVINLRDPRRD-------------RCTDEDGTALLRLARLY--KIPVTTPNATAM 110 (112)
T ss_pred ---------CCEEEEEEcCCCCcc-------------cccCCChHHHHHHHHHc--CCCEEECHHHHh
Confidence 579999988776642 12466799999999999 999999987654
No 20
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=99.43 E-value=2.1e-13 Score=121.41 Aligned_cols=90 Identities=46% Similarity=0.751 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhhHHHHHhCCCCc
Q psy2261 18 GLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSDQSDMKKMNYDM 97 (857)
Q Consensus 18 glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h~~~l~~~~I~~ 97 (857)
+++++++.|.++||+|+||+||+++|+++||+| ||+|++|++|+. ..++......
T Consensus 1 ~~~~~~~~l~~lG~~i~AT~gTa~~L~~~Gi~~-----------------~~~~~ki~~~~~--------~i~~~i~~g~ 55 (90)
T smart00851 1 GLVELAKRLAELGFELVATGGTAKFLREAGLPV-----------------KTLHPKVHGGIL--------AILDLIKNGE 55 (90)
T ss_pred CHHHHHHHHHHCCCEEEEccHHHHHHHHCCCcc-----------------eeccCCCCCCCH--------HHHHHhcCCC
Confidence 478999999999999999999999999999986 889999999864 2456677789
Q ss_pred eeEEEEecCChhhhccCCCCChhhhhhccccchHH
Q psy2261 98 VSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVT 132 (857)
Q Consensus 98 IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGps 132 (857)
||+||++.|||.+...+.+..+..+..+++|+++|
T Consensus 56 id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 56 IDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred eEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 99999999998765544455566666666666553
No 21
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=98.95 E-value=2.3e-09 Score=99.62 Aligned_cols=53 Identities=43% Similarity=0.612 Sum_probs=50.3
Q ss_pred EEEEEec--CCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCC
Q psy2261 8 LVILSVS--DKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAP 60 (857)
Q Consensus 8 raLISVs--DK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfP 60 (857)
.+|+|+. ||+.++++++.|.++||+|+||+||+++|+++|++|+.|+++++|+
T Consensus 2 ~vlisv~~~dk~~~~~~a~~l~~~G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~~ 56 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEP 56 (116)
T ss_pred cEEEecCcccchhHHHHHHHHHHCCCEEEEccHHHHHHHHcCCCceEeeeccCCC
Confidence 5899999 6999999999999999999999999999999999999999998874
No 22
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.87 E-value=4e-09 Score=97.05 Aligned_cols=101 Identities=30% Similarity=0.403 Sum_probs=75.9
Q ss_pred cEEEEEec--CCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCCh
Q psy2261 7 KLVILSVS--DKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTD 84 (857)
Q Consensus 7 graLISVs--DK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~ 84 (857)
|++|+|++ ||+.++++++.|.++||+|+||+||+++|+++|++|+.|.++.+ -+|.|...|..
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~-----------~~~~i~~~i~~---- 65 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSE-----------GRPNIVDLIKN---- 65 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCC-----------CchhHHHHHHc----
Confidence 56999999 68999999999999999999999999999999999999998751 23444333321
Q ss_pred hhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCc
Q psy2261 85 SDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPS 151 (857)
Q Consensus 85 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~ 151 (857)
..||+||...- ... -+--|-.|-|.|..+ +|.++++++
T Consensus 66 -----------~~id~vIn~~~--~~~--------------~~~~~~~iRR~Av~~--~ipl~T~~~ 103 (110)
T cd01424 66 -----------GEIQLVINTPS--GKR--------------AIRDGFSIRRAALEY--KVPYFTTLD 103 (110)
T ss_pred -----------CCeEEEEECCC--CCc--------------cCccHHHHHHHHHHh--CCCEEecHH
Confidence 47899886521 110 123577899999987 666666654
No 23
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.78 E-value=2.7e-08 Score=97.27 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=85.7
Q ss_pred CccEEEEEec--CCCChHHHHHHHHHC--CcEEEEehhHHHHHHhC-CCCceecccccCCCcccCCcccccchhhhcccc
Q psy2261 5 NGKLVILSVS--DKTGLLPFAKQLSGL--GYTLVASGGTAKALRDE-NIPVRDVADITGAPEMLGGRVKTLHPAVHAGIL 79 (857)
Q Consensus 5 ~~graLISVs--DK~glvelAr~L~~l--GfeIiATgGTAk~L~e~-GI~v~~VskvTgfPEil~GRVKTLHPkIhgGIL 79 (857)
++.++||||+ ||+.++++++.|.++ ||+|+||+||+++|+++ ||+|+.| +. |-++|+ |.|..-|.
T Consensus 3 ~~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~Gi~v~~v--i~---~~~gg~-----~~i~~~I~ 72 (142)
T PRK05234 3 ARKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQEATGLDVTRL--LS---GPLGGD-----QQIGALIA 72 (142)
T ss_pred cCcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHhccCCeeEEE--Ec---CCCCCc-----hhHHHHHH
Confidence 5668999999 599999999999999 99999999999999999 9999888 32 333454 33333222
Q ss_pred CCCChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHH
Q psy2261 80 SRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKD 159 (857)
Q Consensus 80 ar~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~e 159 (857)
. +.||+||.---|...- . -.-.|-.|-|+|.++ +|.++++++-=..+++.
T Consensus 73 ~---------------g~i~lVInt~dp~~~~----~---------~~~D~~~IRR~Av~~--~IP~~T~l~tA~a~~~a 122 (142)
T PRK05234 73 E---------------GKIDMLIFFRDPLTAQ----P---------HDPDVKALLRLADVW--NIPVATNRATADFLISS 122 (142)
T ss_pred c---------------CceeEEEEecCCCCCC----c---------ccchHHHHHHHHHHc--CCCEEcCHHHHHHHHHH
Confidence 2 3789986543334211 0 012366788888885 69999999888888887
Q ss_pred HH
Q psy2261 160 IE 161 (857)
Q Consensus 160 l~ 161 (857)
|.
T Consensus 123 l~ 124 (142)
T PRK05234 123 LL 124 (142)
T ss_pred Hh
Confidence 74
No 24
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.61 E-value=1.1e-07 Score=117.28 Aligned_cols=114 Identities=32% Similarity=0.457 Sum_probs=88.8
Q ss_pred CccEEEEEec--CCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC
Q psy2261 5 NGKLVILSVS--DKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN 82 (857)
Q Consensus 5 ~~graLISVs--DK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~ 82 (857)
.+|++||||+ ||++++++|+.|.++||+|+||+||+++|+++||+|+.|+++.. | +|.|.
T Consensus 936 ~~~~~lisv~~~dK~~l~~~a~~l~~~G~~i~aT~gT~~~l~~~gi~~~~v~~~~~------~-----~~~i~------- 997 (1066)
T PRK05294 936 TSGTVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELVNKVHE------G-----RPHIV------- 997 (1066)
T ss_pred CCCeEEEEeccccHHHHHHHHHHHHHcCCEEEEccHHHHHHHHCCCeeEEEeeccC------c-----CccHH-------
Confidence 3468999999 89999999999999999999999999999999999999998752 1 23321
Q ss_pred ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHc
Q psy2261 83 TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEA 162 (857)
Q Consensus 83 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~ 162 (857)
+.+++ ..||+||.... .. + -.-.|-.+=|+|..| .|-++|+++--..+++.|+.
T Consensus 998 -----~~i~~---~~idlvIn~~~--~~---~-----------~~~~g~~iRr~Av~~--~ip~~T~~~~a~~~v~al~~ 1051 (1066)
T PRK05294 998 -----DLIKN---GEIDLVINTPT--GR---Q-----------AIRDGFSIRRAALEY--KVPYITTLAGARAAVKAIEA 1051 (1066)
T ss_pred -----HHHHc---CCeEEEEECCC--Cc---c-----------cccccHHHHHHHHHc--CCCEEecHHHHHHHHHHHHh
Confidence 11222 37899876633 11 1 112477888999998 88889999999999999864
No 25
>PLN02735 carbamoyl-phosphate synthase
Probab=98.42 E-value=2.1e-07 Score=115.48 Aligned_cols=115 Identities=23% Similarity=0.377 Sum_probs=84.9
Q ss_pred CccEEEEEecC--CCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC
Q psy2261 5 NGKLVILSVSD--KTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN 82 (857)
Q Consensus 5 ~~graLISVsD--K~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~ 82 (857)
.+|++||||+| |++++++|+.|.++||+|+||+||+++|+++||+|+.|.++.. | +|.|.
T Consensus 971 ~~g~vliSv~d~~K~~~~~~a~~L~~lG~~i~aT~GTa~~L~~~Gi~~~~v~~~~~------~-----~~~~~------- 1032 (1102)
T PLN02735 971 LSGTVFISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKLHE------G-----RPHAG------- 1032 (1102)
T ss_pred CCCeEEEEEecCCchhHHHHHHHHHHCCCEEEEccHHHHHHHHCCCceEEEeeccC------C-----CccHH-------
Confidence 35689999996 9999999999999999999999999999999999999998751 2 13221
Q ss_pred ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHc
Q psy2261 83 TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEA 162 (857)
Q Consensus 83 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~ 162 (857)
+.+++ ..||||| |+ | + .+.. . . --|-.+=|+|..+ +|.++|+.+-=..+++.|+.
T Consensus 1033 -----~~i~~---~~i~~vi-n~-~---~-~~~~-~------~--~d~~~iRr~a~~~--~ip~~t~~~~a~~~~~~~~~ 1087 (1102)
T PLN02735 1033 -----DMLAN---GQIQLMV-IT-S---S-GDAL-D------Q--KDGRQLRRMALAY--KVPIITTVAGALATAQAVKS 1087 (1102)
T ss_pred -----HHHHc---CCeEEEE-EC-C---C-Cccc-c------c--cccHHHHHHHHHc--CCCEEecHHHHHHHHHHHHh
Confidence 11222 3689987 55 3 1 1100 0 0 1367777888876 78888998887888887743
No 26
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.34 E-value=1.2e-06 Score=108.28 Aligned_cols=111 Identities=28% Similarity=0.368 Sum_probs=81.7
Q ss_pred CccEEEEEec--CCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC
Q psy2261 5 NGKLVILSVS--DKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN 82 (857)
Q Consensus 5 ~~graLISVs--DK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~ 82 (857)
..|++|+||+ ||+.++++|+.|.++||+|+||.||+++|+++||+|+.|.++.. || |.|.
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~l~~~g~~~~at~gta~~l~~~gi~~~~~~~~~~------~~-----~~~~------- 997 (1050)
T TIGR01369 936 KKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSE------GR-----PNIL------- 997 (1050)
T ss_pred CCCeEEEEeccCchHHHHHHHHHHHHCCCEEEEechHHHHHHHCCCceEEEeecCC------CC-----ccHH-------
Confidence 4578999998 68999999999999999999999999999999999999998851 22 3221
Q ss_pred ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHH
Q psy2261 83 TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIK 158 (857)
Q Consensus 83 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~ 158 (857)
+.++ -..||+||.-... +.. -.--|-.|=|+|.++ +|.++|+.+--..+++
T Consensus 998 -----~~i~---~~~i~lvin~~~~--------~~~-------~~~~g~~iRr~Ai~~--~ip~~t~~~~a~~~~~ 1048 (1050)
T TIGR01369 998 -----DLIK---NGEIELVINTTSK--------GAG-------TATDGYKIRREALDY--GVPLITTLNTAEAFAE 1048 (1050)
T ss_pred -----HHHH---cCCeEEEEECCCC--------Ccc-------cccccHHHHHHHHHc--CCCEEecHHHHHHHHh
Confidence 1122 2568998654211 111 123478888888887 7888888876665554
No 27
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.19 E-value=1.3e-06 Score=108.14 Aligned_cols=114 Identities=22% Similarity=0.364 Sum_probs=84.4
Q ss_pred CccEEEEEec--CCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC
Q psy2261 5 NGKLVILSVS--DKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN 82 (857)
Q Consensus 5 ~~graLISVs--DK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~ 82 (857)
.+|++||||+ ||..++++|+.|.++||+|+||.||+++|+++||+|+.|.|+.. || |.|.
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~at~gt~~~l~~~gi~~~~v~~~~~------~~-----~~~~------- 997 (1068)
T PRK12815 936 SYGTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQE------GS-----PSLL------- 997 (1068)
T ss_pred CCCeEEEEecccchHHHHHHHHHHHHCCCEEEEccHHHHHHHhCCCeEEEEeeccC------CC-----ccHH-------
Confidence 4578999999 58999999999999999999999999999999999999998852 21 2221
Q ss_pred ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHc
Q psy2261 83 TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEA 162 (857)
Q Consensus 83 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~ 162 (857)
++-++ ..||+|+. . |-... .. --|-.+=|+|..+ +|-++|+.+--..+++.|+.
T Consensus 998 ------~~~~~--~~~~~vin-~-~~~~~-----~~---------~~~~~irr~a~~~--~ip~~t~~~~a~~~~~~~~~ 1051 (1068)
T PRK12815 998 ------ERIKQ--HRIVLVVN-T-SLSDS-----AS---------EDAIKIRDEALST--HIPVFTELETAQAFLQVLES 1051 (1068)
T ss_pred ------HHHHc--CCeEEEEE-C-CCCcc-----cc---------cccHHHHHHHHHc--CCCEEecHHHHHHHHHHHHh
Confidence 22222 34788765 3 21111 00 1366677777776 78888999988888888854
No 28
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=98.14 E-value=1.5e-06 Score=81.92 Aligned_cols=47 Identities=26% Similarity=0.397 Sum_probs=43.1
Q ss_pred EEEEec-CCCChHHHHHHHHHC--CcEEEEehhHHHHHHh-CCCCceecccc
Q psy2261 9 VILSVS-DKTGLLPFAKQLSGL--GYTLVASGGTAKALRD-ENIPVRDVADI 56 (857)
Q Consensus 9 aLISVs-DK~glvelAr~L~~l--GfeIiATgGTAk~L~e-~GI~v~~Vskv 56 (857)
+||+=- ||+.++++++.|.++ ||+|+||+||+++|++ +||+|+.| |+
T Consensus 3 ~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~gTa~~L~~~~Gi~v~~v-k~ 53 (115)
T cd01422 3 ALIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNRM-KS 53 (115)
T ss_pred eEEecccchHHHHHHHHHHHHHhcCCEEEEechHHHHHHHhhCCcEEEE-ec
Confidence 566544 899999999999999 9999999999999999 99999999 76
No 29
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=93.48 E-value=0.5 Score=50.11 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCHhHHHHcCCeEEe-cCCCCC--CcHHHHHHHHhCCcEEE
Q psy2261 810 RANIDRAVLSGAKFVS-APGGSN--NDQSVIDAANYHKLTLI 848 (857)
Q Consensus 810 ~D~Vd~Aa~~GV~aIi-QPGGSi--RD~EVI~Aane~gIaMv 848 (857)
++.|+.++++|.+.|+ +.|+++ .-+++|+.||++||..+
T Consensus 172 ~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~ 213 (214)
T PF06230_consen 172 PDTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIV 213 (214)
T ss_pred HHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEe
Confidence 3799999999999985 555553 56799999999999875
No 30
>KOG0370|consensus
Probab=90.77 E-value=0.2 Score=61.89 Aligned_cols=44 Identities=39% Similarity=0.548 Sum_probs=40.9
Q ss_pred CCCccEEEEEec-CCCChHHHHHHHHHCCcEEEEehhHHHHHHhC
Q psy2261 3 KNNGKLVILSVS-DKTGLLPFAKQLSGLGYTLVASGGTAKALRDE 46 (857)
Q Consensus 3 ~~~~graLISVs-DK~glvelAr~L~~lGfeIiATgGTAk~L~e~ 46 (857)
+-|++.+|||+- +|..++..++.|.++||+|++|.||++++.++
T Consensus 1294 ~iPk~~i~i~ig~~k~ell~~~~~l~~~gy~lyat~~t~d~~~~~ 1338 (1435)
T KOG0370|consen 1294 KIPKKNILISIGSYKPELLPSARDLAKLGYKLYATNGTADFYLEN 1338 (1435)
T ss_pred cccCCCeEEEeccchHHHHHHHHHHHhcCceeEEeccchhhhhcc
Confidence 346778999998 89999999999999999999999999999998
No 31
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=78.22 E-value=1 Score=41.44 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=39.6
Q ss_pred eEEe-ccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCCC
Q psy2261 799 VSVA-SDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855 (857)
Q Consensus 799 ~Vla-SDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~RhF 855 (857)
.|+. +|- .|.+..|..+|+.+||=.||.-=++++++.|+++||+++.|..--|
T Consensus 43 lvIt~gdR----~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~dtf 96 (105)
T PF07085_consen 43 LVITPGDR----EDIQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYDTF 96 (105)
T ss_dssp EEEEETT-----HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-HH
T ss_pred EEEEeCCc----HHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 4444 665 6889999999999999999999999999999999999999987655
No 32
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.49 E-value=2.7 Score=44.26 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=31.4
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
+.++.|.++|.++|+-||= |.||+++|+++||+.+
T Consensus 71 ~~a~~a~~aGA~FivsP~~---~~~v~~~~~~~~i~~i 105 (204)
T TIGR01182 71 EQLRQAVDAGAQFIVSPGL---TPELAKHAQDHGIPII 105 (204)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCcEE
Confidence 3479999999999999985 8999999999999865
No 33
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=72.66 E-value=3.5 Score=43.19 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=29.2
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
+.++.|.++|+.+|+.|+ =|+||++.|+++||..+
T Consensus 71 e~a~~a~~aGA~FivSP~---~~~~v~~~~~~~~i~~i 105 (196)
T PF01081_consen 71 EQAEAAIAAGAQFIVSPG---FDPEVIEYAREYGIPYI 105 (196)
T ss_dssp HHHHHHHHHT-SEEEESS-----HHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCccc
Confidence 368999999999999997 68999999999999875
No 34
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.24 E-value=4.3 Score=42.71 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=35.1
Q ss_pred ceEEeccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 798 GVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 798 G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
|.||-. +.++.|.++|.++|+-|+ =|+|||+.|+++||..+
T Consensus 61 GTVl~~-------e~a~~ai~aGA~FivSP~---~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 61 GTILNA-------KQFEDAAKAGSRFIVSPG---TTQELLAAANDSDVPLL 101 (201)
T ss_pred EeCcCH-------HHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe
Confidence 556654 368999999999999997 68999999999998765
No 35
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.25 E-value=6.8 Score=41.82 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
+.++.|.++|.++|+-|| =|++|++.|+++||..+
T Consensus 82 e~a~~a~~aGA~FiVsP~---~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 82 ATAALYIQLGANFIVTPL---FNPDIAKVCNRRKVPYS 116 (222)
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe
Confidence 467899999999999997 68999999999999875
No 36
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.77 E-value=8.8 Score=40.52 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=31.6
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
+.++.|.++|..+|+-||- |+||+++|+++||..+
T Consensus 79 ~~~~~a~~aGA~FivsP~~---~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 79 VTARLAILAGAQFIVSPSF---NRETAKICNLYQIPYL 113 (213)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCCEE
Confidence 3689999999999999974 7999999999999876
No 37
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.44 E-value=11 Score=39.81 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=31.9
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
+.++.|.++|..+|+-||= |+|+|+.|+++||.++
T Consensus 78 ~~a~~a~~aGA~FivsP~~---~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPGL---TPPLLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCCEe
Confidence 7799999999999999983 4499999999999987
No 38
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=57.61 E-value=10 Score=40.42 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=31.4
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
+-++.|+++|.+.|+-|| =+.|||++|+++||+.+
T Consensus 76 ~q~~~a~~aGa~fiVsP~---~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 76 EQARQAIAAGAQFIVSPG---LNPEVAKAANRYGIPYI 110 (211)
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHhCCCccc
Confidence 457899999999999998 58999999999998764
No 39
>PRK08264 short chain dehydrogenase; Validated
Probab=55.72 E-value=83 Score=31.79 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCccEEEEEecCCCChHHHHHHHHHCCc-EEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC
Q psy2261 4 NNGKLVILSVSDKTGLLPFAKQLSGLGY-TLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN 82 (857)
Q Consensus 4 ~~~graLISVsDK~glvelAr~L~~lGf-eIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~ 82 (857)
-..+++||.-..--=-..+|+.|.+.|+ .++.+.-+.+-+.+ .+.+|+.+.- = -.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-----------------~~~~~~~~~~-----D--~~ 59 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-----------------LGPRVVPLQL-----D--VT 59 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-----------------cCCceEEEEe-----c--CC
Confidence 3446788887755555678899999999 88888765554443 1223332210 0 11
Q ss_pred ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccc--cchHH-HHHHHH-----hCCCceEEEeCCccH
Q psy2261 83 TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENID--IGGVT-LLRAAA-----KNHERVTVICDPSDY 153 (857)
Q Consensus 83 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnID--IGGps-miRAAA-----KN~~~V~Vv~dP~DY 153 (857)
+++..+++.+. +.++|+||.|--.+...-.-...+.++..+.++ .-|+- +++++. .+..+++.+++..-|
T Consensus 60 ~~~~~~~~~~~-~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~ 137 (238)
T PRK08264 60 DPASVAAAAEA-ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSW 137 (238)
T ss_pred CHHHHHHHHHh-cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhc
Confidence 34444444432 467999999875421110111234555554444 45553 344433 245666666665443
No 40
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=55.22 E-value=3.8 Score=37.68 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=32.6
Q ss_pred cCceEEeccccccCCCCHhHHHHcCCeEEecCCCCC
Q psy2261 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSN 831 (857)
Q Consensus 796 l~G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSi 831 (857)
..|..+.|-.|-||.|-+-+....|++.||-||---
T Consensus 7 ~~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe 42 (80)
T PF08149_consen 7 KPGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGE 42 (80)
T ss_pred CCCCeeeeeEEechHHeeEeeccCceeEEeccCCCC
Confidence 457889999999999999999999999999999643
No 41
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=53.93 E-value=26 Score=33.70 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=13.0
Q ss_pred CCcEEEeccCCcceeeec
Q psy2261 261 LPAAASFKHCSPAGAAVF 278 (857)
Q Consensus 261 ~paavivKH~nPcG~A~~ 278 (857)
.+-++|+||++-||+...
T Consensus 19 ~~~~~iFKHSt~C~IS~~ 36 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAM 36 (105)
T ss_dssp -SEEEEEEE-TT-HHHHH
T ss_pred cCcEEEEEeCCCChhhHH
Confidence 467999999999999864
No 42
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=47.13 E-value=25 Score=33.47 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=27.8
Q ss_pred CCCHhHHHHcCCeEE-ecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 810 RANIDRAVLSGAKFV-SAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 810 ~D~Vd~Aa~~GV~aI-iQPGGSiRD~EVI~Aane~gIaMv 848 (857)
.+-++.+.+.|++++ +||| .+++|++++|+++||.++
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEE
Confidence 467899999999875 6777 899999999999999976
No 43
>PRK04017 hypothetical protein; Provisional
Probab=44.61 E-value=84 Score=31.54 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=48.4
Q ss_pred hhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHH-----HHHH
Q psy2261 84 DSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYA-----KVIK 158 (857)
Q Consensus 84 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~-----~v~~ 158 (857)
..+.+.|++.|+.. +++++|=+|+.+.. |. + |-+++.|.++|||+.=. .+.+
T Consensus 31 k~D~~~L~~lGv~~-~iI~t~g~~~~~~~-----------e~--------i---a~~~r~VIILTD~D~~GekIr~~l~~ 87 (132)
T PRK04017 31 KRDVESLRKLGVEG-EIIKVSRTPLAEIA-----------EL--------I---ASRGKEVIILTDFDRKGEELAKKLSE 87 (132)
T ss_pred ccHHHHHHHcCCCc-cEEEECCeecchHH-----------HH--------H---HhcCCeEEEEECCCcchHHHHHHHHH
Confidence 45677899999976 77777777763221 22 2 34888999999998643 3445
Q ss_pred HHHcCCCCCCCHHHHHHHH
Q psy2261 159 DIEASPTKETSEEIRKKLA 177 (857)
Q Consensus 159 el~~~~~G~~s~~~R~~LA 177 (857)
.|+.. .-.+++++|++|-
T Consensus 88 ~l~~~-G~~vd~~~R~~l~ 105 (132)
T PRK04017 88 YLQGY-GIKVDTEIRRELF 105 (132)
T ss_pred HHHhC-CCCccHHHHHHHH
Confidence 56653 3478899999875
No 44
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=44.11 E-value=20 Score=36.28 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=73.6
Q ss_pred EEEEEec-CCCChHHHHHHHHH--CCcEEEEehhHHHHHHhC-CCCceecccccCCCcccCCcccccchhhhccccCCCC
Q psy2261 8 LVILSVS-DKTGLLPFAKQLSG--LGYTLVASGGTAKALRDE-NIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNT 83 (857)
Q Consensus 8 raLISVs-DK~glvelAr~L~~--lGfeIiATgGTAk~L~e~-GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~ 83 (857)
-+||.=- -|+.++++++.-.+ .+|+|+|||-|.+.|+++ |++|+.. . .|=|+ .
T Consensus 5 IALIAHD~kK~~l~~f~~~~~~~L~~h~L~ATgTTG~~i~~~tgL~V~~~-----------------~----SGplG--G 61 (143)
T TIGR00160 5 IALIAHDKKKQDLVNFVQQHKPLLSQHDLYATGTTGNLISRATGLNINAM-----------------L----SGPMG--G 61 (143)
T ss_pred EEEEecccchHHHHHHHHHHHHHHcCCCEEECccHHHHHHHHHCCCeEEe-----------------c----cCCcc--H
Confidence 4565443 38999999988766 489999999999999885 4444321 1 12222 1
Q ss_pred hhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHH
Q psy2261 84 DSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDI 160 (857)
Q Consensus 84 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el 160 (857)
+..+..+-.. ..||+||.=--|+..-=.. . || -+|+|.+.=+ +|-+-|+++-=+-++..+
T Consensus 62 DqQIga~Ia~--g~id~vIFf~DPl~~~phe--p---------Di--~aLlRlc~v~--nIP~AtN~aTA~~li~~~ 121 (143)
T TIGR00160 62 DQQIGALIAE--GKIDAVIFFWDPLNAQPHE--P---------DV--KALLRLCTVW--NIPLATNVATADFLIKSP 121 (143)
T ss_pred HHHHHHHHHh--CCCCEEEEecCCCCCCCCC--c---------CH--HHHHHHHHhh--CcccccCHHHHHHHHhCc
Confidence 2223333222 4799999988888532111 1 11 3789988654 888889998877777665
No 45
>PRK07806 short chain dehydrogenase; Provisional
Probab=43.77 E-value=2.1e+02 Score=29.14 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCCCccEEEEEecCCCChHHHHHHHHHCCcEEEEehh
Q psy2261 1 MEKNNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGG 38 (857)
Q Consensus 1 ~~~~~~graLISVsDK~glvelAr~L~~lGfeIiATgG 38 (857)
|.+...+++||+-...-==..+++.|.+.|++++.+..
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 56666678999887654445688999999999987643
No 46
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=42.30 E-value=37 Score=31.01 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=32.1
Q ss_pred hHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCC
Q psy2261 814 DRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRL 854 (857)
Q Consensus 814 d~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~Rh 854 (857)
+.+.+.|+...+--||++ -+.+.++|+++++.|+..|.|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~-~~~I~~~~~~~~~dllviG~~~ 95 (124)
T cd01987 56 RLAEELGAEVVTLPGDDV-AEAIVEFAREHNVTQIVVGKSR 95 (124)
T ss_pred HHHHHcCCEEEEEeCCcH-HHHHHHHHHHcCCCEEEeCCCC
Confidence 445556777767678886 6789999999999999999874
No 47
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=42.17 E-value=33 Score=36.53 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCHhHHHHcCCeEEecCCCC--CCc-HHHHHHHHhCCcEEEEc
Q psy2261 811 ANIDRAVLSGAKFVSAPGGS--NND-QSVIDAANYHKLTLIHH 850 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGS--iRD-~EVI~Aane~gIaMvFT 850 (857)
..++.+.++||++|+.+|.+ -+| +.+.+.|+++|+.++++
T Consensus 36 ~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 78 (293)
T cd00530 36 EELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAA 78 (293)
T ss_pred HHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEe
Confidence 45788899999999999986 355 77888999999876654
No 48
>PRK07102 short chain dehydrogenase; Provisional
Probab=41.90 E-value=1e+02 Score=31.36 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=64.0
Q ss_pred cEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhh
Q psy2261 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSD 86 (857)
Q Consensus 7 graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h 86 (857)
+++||+-...-=-..+++.|.+.|++++.+.-...-+++. ..++. ..-+++|..++- =+ .++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~------~~~~~---~~~~~~~~~~~~-----Dl--~~~~~ 65 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL------ADDLR---ARGAVAVSTHEL-----DI--LDTAS 65 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH------HHHHH---HhcCCeEEEEec-----CC--CChHH
Confidence 4677777654445678899999999998875443333220 00100 001233333221 01 13344
Q ss_pred HHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhc--cccchHH-HHHHHHh-----CCCceEEEeCC
Q psy2261 87 QSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN--IDIGGVT-LLRAAAK-----NHERVTVICDP 150 (857)
Q Consensus 87 ~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEn--IDIGGps-miRAAAK-----N~~~V~Vv~dP 150 (857)
++++.+.-...+|+||.|-..+... .....+.++..+. +..-|+- +++++.+ +..+++++++.
T Consensus 66 ~~~~~~~~~~~~d~vv~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 66 HAAFLDSLPALPDIVLIAVGTLGDQ-AACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred HHHHHHHHhhcCCEEEECCcCCCCc-ccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 4443332223569999886543221 1124455655443 4445554 4444443 45667777765
No 49
>PRK06842 fumarate hydratase; Provisional
Probab=40.05 E-value=42 Score=35.34 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=29.4
Q ss_pred hHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcE-EEEcC
Q psy2261 814 DRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLT-LIHHN 851 (857)
Q Consensus 814 d~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIa-MvFTG 851 (857)
+...+.|++.+|--|| |+++|+++|.+||-. +.++|
T Consensus 89 ~~l~~~Gv~~~IGKG~--r~~~~~~a~k~~gaVYl~~~G 125 (185)
T PRK06842 89 PRLLDIGLKGMIGKGA--RSDEVIESIKKNKAVYFGAIG 125 (185)
T ss_pred HHHHHCCCeEEEECCC--CCHHHHHHHHHcCEEEEEcCC
Confidence 3455689999999998 679999999999855 56665
No 50
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=39.07 E-value=18 Score=36.41 Aligned_cols=130 Identities=25% Similarity=0.450 Sum_probs=70.7
Q ss_pred CCCChHHHHHHH-HHCCcEEE-EehhHHHHHHhC-CCCceecccccCCCcccCC--cccccchhhhccccC-CCChhhHH
Q psy2261 15 DKTGLLPFAKQL-SGLGYTLV-ASGGTAKALRDE-NIPVRDVADITGAPEMLGG--RVKTLHPAVHAGILS-RNTDSDQS 88 (857)
Q Consensus 15 DK~glvelAr~L-~~lGfeIi-ATgGTAk~L~e~-GI~v~~VskvTgfPEil~G--RVKTLHPkIhgGILa-r~~~~h~~ 88 (857)
+=+..++.|+.| ...|++++ |.|||+.+|+++ ++||..|. +|+| ++|.. +.|..+|+| |++. ++.-....
T Consensus 18 ~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~-~s~~-Dil~al~~a~~~~~~I--avv~~~~~~~~~~ 93 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIP-ISGF-DILRALAKAKKYGPKI--AVVGYPNIIPGLE 93 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE----HH-HHHHHHHHCCCCTSEE--EEEEESS-SCCHH
T ss_pred cHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEEC-CCHh-HHHHHHHHHHhcCCcE--EEEecccccHHHH
Confidence 456788999999 78999865 669999999998 67776653 4444 44432 234555665 6666 33222234
Q ss_pred HHHh-CCCCceeEEEEecCChhhhccCCCCChhhhhhc-----cc--cchHHHHHHHHhCCCceEEEeCCccHHHHHHHH
Q psy2261 89 DMKK-MNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN-----ID--IGGVTLLRAAAKNHERVTVICDPSDYAKVIKDI 160 (857)
Q Consensus 89 ~l~~-~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEn-----ID--IGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el 160 (857)
.+.+ +|+ ++. .|||... -+.+++|++ +| |||....+.|.|..-.. |+..+ .++.+...|
T Consensus 94 ~~~~ll~~---~i~---~~~~~~~-----~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~-v~i~s-g~esi~~Al 160 (176)
T PF06506_consen 94 SIEELLGV---DIK---IYPYDSE-----EEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPG-VLIES-GEESIRRAL 160 (176)
T ss_dssp HHHHHHT----EEE---EEEESSH-----HHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEE-EESS---HHHHHHHH
T ss_pred HHHHHhCC---ceE---EEEECCH-----HHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcE-EEEEe-cHHHHHHHH
Confidence 4433 333 443 3444321 023444443 34 79999999988855444 33333 445666655
Q ss_pred H
Q psy2261 161 E 161 (857)
Q Consensus 161 ~ 161 (857)
.
T Consensus 161 ~ 161 (176)
T PF06506_consen 161 E 161 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=38.76 E-value=42 Score=35.60 Aligned_cols=93 Identities=22% Similarity=0.431 Sum_probs=48.9
Q ss_pred EEEEEecC-----CCChHHHHHHHHHCCcEE-EEehhHH-HHHHhCCCCceecccccCCCcc-cCCcc---cccchhhhc
Q psy2261 8 LVILSVSD-----KTGLLPFAKQLSGLGYTL-VASGGTA-KALRDENIPVRDVADITGAPEM-LGGRV---KTLHPAVHA 76 (857)
Q Consensus 8 raLISVsD-----K~glvelAr~L~~lGfeI-iATgGTA-k~L~e~GI~v~~VskvTgfPEi-l~GRV---KTLHPkIhg 76 (857)
++|+.|.. -...+.+|+.|. |+++ +.|.|.+ ++|++. +++..+..+. -. -+|++ +|++-..+-
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~Lr--g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 75 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARALR--GHEVTFITSGPAPEFLKPR-FPVREIPGLG---PIQENGRLDRWKTVRNNIRW 75 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHHc--cCceEEEEcCCcHHHhccc-cCEEEccCce---EeccCCccchHHHHHHHHHh
Confidence 57777774 455688999994 5543 3344444 788766 5665553321 11 22333 333322211
Q ss_pred cccCCCChhhHHHHHhCCCCceeEEEEecCCh
Q psy2261 77 GILSRNTDSDQSDMKKMNYDMVSIVVCNLYPF 108 (857)
Q Consensus 77 GILar~~~~h~~~l~~~~I~~IDlVVVNLYPF 108 (857)
+..-...-.+..+...-..+|+||++.||+
T Consensus 76 --~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~ 105 (318)
T PF13528_consen 76 --LARLARRIRREIRWLREFRPDLVISDFYPL 105 (318)
T ss_pred --hHHHHHHHHHHHHHHHhcCCCEEEEcChHH
Confidence 111011111122233445699999999998
No 52
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=36.83 E-value=1.9e+02 Score=32.83 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=57.2
Q ss_pred CC-ChhhHHHHHhCCCCceeEEEEecCChhhhcc-CCCCChhhhhhcccc----chHHHHHHHHhCCCc-----------
Q psy2261 81 RN-TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVA-KPDCNIPTAVENIDI----GGVTLLRAAAKNHER----------- 143 (857)
Q Consensus 81 r~-~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~-~~~~~~~e~IEnIDI----GGpsmiRAAAKN~~~----------- 143 (857)
|+ .+++++.+.+.| =+|-||+||---+-. .+..|+++++++||- +| +++
T Consensus 201 RNl~D~qlkaI~~~g----GvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G----------~dhVglGsDf~g~~ 266 (313)
T COG2355 201 RNLSDEQLKAIAETG----GVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVG----------IDHVGLGSDFDGGT 266 (313)
T ss_pred CCCCHHHHHHHHhcC----CEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcC----------cceeEecccccCCC
Confidence 44 488899999887 478899998532111 146799999999972 11 112
Q ss_pred --eEEEeCCccHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q psy2261 144 --VTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALK 179 (857)
Q Consensus 144 --V~Vv~dP~DY~~v~~el~~~~~G~~s~~~R~~LA~k 179 (857)
+.-+=||..|+.++++|.. .| .+.+.=+++|.+
T Consensus 267 ~~p~gled~~~l~~l~~~L~~--~G-~~e~~i~~i~~~ 301 (313)
T COG2355 267 GPPDGLEDVGKLPNLTAALIE--RG-YSEEEIEKIAGE 301 (313)
T ss_pred CCchhhcChhHHHHHHHHHHH--cC-CCHHHHHHHHHH
Confidence 4456688999999999987 35 777766666665
No 53
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=36.11 E-value=31 Score=32.89 Aligned_cols=55 Identities=36% Similarity=0.476 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHCC---cEEEEehh----HHHHHHhCCCCceecc--cccCCCcccCCcccc
Q psy2261 15 DKTGLLPFAKQLSGLG---YTLVASGG----TAKALRDENIPVRDVA--DITGAPEMLGGRVKT 69 (857)
Q Consensus 15 DK~glvelAr~L~~lG---feIiATgG----TAk~L~e~GI~v~~Vs--kvTgfPEil~GRVKT 69 (857)
+..++..|...|.+.+ +-+-+|+| =+.+|.++|++|..|+ .+-.|.+.++++.||
T Consensus 31 ~~~~~~~l~~~l~~~~~~~v~~E~tg~y~~~l~~~L~~~g~~v~~vnp~~~~~~~~~~~~~~Kt 94 (144)
T PF01548_consen 31 DPAGLEKLLDWLASLGPVLVVMEATGGYWRPLADFLQDAGIEVVVVNPLQVKRFRKSLGRRAKT 94 (144)
T ss_pred cccchhHHhhhhccccccccccccccccchhhhhheeccccccccccccccccccccccccccc
Confidence 6899999999998886 55667774 4578889999999888 455888888888888
No 54
>PRK08862 short chain dehydrogenase; Provisional
Probab=35.59 E-value=83 Score=32.57 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=31.6
Q ss_pred ccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHh
Q psy2261 6 GKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRD 45 (857)
Q Consensus 6 ~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e 45 (857)
.+++||+-...-==..+|+.|.+.|++++.++-+.+-|++
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~ 44 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKD 44 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 4578888776655568999999999999999877776655
No 55
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=35.17 E-value=29 Score=36.43 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=65.8
Q ss_pred HHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCccc-------CCcccccchhhh--ccccCCCChhhHHHHH
Q psy2261 21 PFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEML-------GGRVKTLHPAVH--AGILSRNTDSDQSDMK 91 (857)
Q Consensus 21 elAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil-------~GRVKTLHPkIh--gGILar~~~~h~~~l~ 91 (857)
.+++.|.++|++.+.-. ++.+++|. ++|++|.. +.-.+-|+|.+. .+|+ +.|...|
T Consensus 15 T~~~~L~~lg~~~i~l~---el~~e~~~-------~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Iv----d~H~~hl- 79 (180)
T COG1936 15 TVCKLLRELGYKVIELN---ELAKENGL-------YTEYDELRKSVIVDVDKLRKRLEELLREGSGIV----DSHLSHL- 79 (180)
T ss_pred HHHHHHHHhCCceeeHH---HHHHhcCC-------eeccCCccceEEeeHHHHHHHHHHHhccCCeEe----echhhhc-
Confidence 45566666677666543 66666665 46666642 234467777652 4444 3455433
Q ss_pred hCCCCceeEEEE-ecCChh--hhccCCCCChhhhhhccccchHHHHHHHHh-CCCceEEEe
Q psy2261 92 KMNYDMVSIVVC-NLYPFS--QTVAKPDCNIPTAVENIDIGGVTLLRAAAK-NHERVTVIC 148 (857)
Q Consensus 92 ~~~I~~IDlVVV-NLYPFe--~tv~~~~~~~~e~IEnIDIGGpsmiRAAAK-N~~~V~Vv~ 148 (857)
.+.+|+||| -.+|+. +-..+.|-+.+.+.||++-=-...+=.=|. -|..|..+-
T Consensus 80 ---~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evd 137 (180)
T COG1936 80 ---LPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVD 137 (180)
T ss_pred ---CCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 235899887 466653 455667999999999999655554444333 235555553
No 56
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=35.04 E-value=2.1e+02 Score=29.69 Aligned_cols=125 Identities=16% Similarity=0.187 Sum_probs=67.7
Q ss_pred cEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCC-CChh
Q psy2261 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSR-NTDS 85 (857)
Q Consensus 7 graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar-~~~~ 85 (857)
+++||+-....=-..+++.|.+.|++++.+..+..-+++. ..++.. .++++..+ ... .+++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~------~~~~~~----~~~~~~~~--------~~Dl~~~~ 72 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKG------LAAYRE----LGIEAHGY--------VCDVTDED 72 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH------HHHHHh----cCCceEEE--------EcCCCCHH
Confidence 5688887765555688999999999999887666555431 111100 12233221 111 2333
Q ss_pred hHHHHHh---CCCCceeEEEEecCChhhhccCCCCChhhhhhcccc---chHHHHHHHHh-----CCCceEEEeCC
Q psy2261 86 DQSDMKK---MNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDI---GGVTLLRAAAK-----NHERVTVICDP 150 (857)
Q Consensus 86 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDI---GGpsmiRAAAK-----N~~~V~Vv~dP 150 (857)
.++++-+ ....+||.||.|--.+... .-...+.++.-+.+++ |--.+++++.+ +..+++.+++.
T Consensus 73 ~~~~~~~~~~~~~~~id~li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~ 147 (265)
T PRK07097 73 GVQAMVSQIEKEVGVIDILVNNAGIIKRI-PMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSM 147 (265)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCC-CcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 3333221 2346899999998654321 1123455666665554 33334444433 45667777664
No 57
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=35.04 E-value=1.2e+02 Score=31.19 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=30.4
Q ss_pred ccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHh
Q psy2261 6 GKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRD 45 (857)
Q Consensus 6 ~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e 45 (857)
.+++||+-....==..+++.|.+.|++++.+.-+..-+++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~ 49 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAA 49 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 3589998886666678899999999999988665444433
No 58
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.43 E-value=1.1e+02 Score=31.71 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecc---cccCCCcccCCcccccchhhhccccCCCChhhHHHHHhC
Q psy2261 17 TGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVA---DITGAPEMLGGRVKTLHPAVHAGILSRNTDSDQSDMKKM 93 (857)
Q Consensus 17 ~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~Vs---kvTgfPEil~GRVKTLHPkIhgGILar~~~~h~~~l~~~ 93 (857)
...+++|+.|.+.|+.-+.=-.-...+.+.+.....+. +.++.|=+.+|.|.+ .++.+++-+.
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~--------------~e~~~~~~~~ 94 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS--------------LEDIERLLDL 94 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCC--------------HHHHHHHHHc
Confidence 36788888888888632221110011233444444333 334566666666654 4566666665
Q ss_pred CCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCC--ceEEEeC
Q psy2261 94 NYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHE--RVTVICD 149 (857)
Q Consensus 94 ~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~--~V~Vv~d 149 (857)
| .|.||++-.+++. |.+++.+++.|. .+.+-.|
T Consensus 95 G---ad~vvigs~~l~d--------------------p~~~~~i~~~~g~~~i~~sid 129 (234)
T cd04732 95 G---VSRVIIGTAAVKN--------------------PELVKELLKEYGGERIVVGLD 129 (234)
T ss_pred C---CCEEEECchHHhC--------------------hHHHHHHHHHcCCceEEEEEE
Confidence 5 6888988887642 556777777774 3444444
No 59
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=33.51 E-value=65 Score=30.83 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=32.2
Q ss_pred CHhHHHHcCCeEEecCCC-CC--CcHHHHHHHHhCCcEEEEcCC
Q psy2261 812 NIDRAVLSGAKFVSAPGG-SN--NDQSVIDAANYHKLTLIHHNT 852 (857)
Q Consensus 812 ~Vd~Aa~~GV~aIiQPGG-Si--RD~EVI~Aane~gIaMvFTG~ 852 (857)
-|+..++.|+.+++=--| .+ =.+++|++||+++++++....
T Consensus 64 ~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 64 FIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 377899999999876444 32 358999999999999987653
No 60
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=33.20 E-value=17 Score=20.50 Aligned_cols=7 Identities=43% Similarity=1.218 Sum_probs=5.8
Q ss_pred CCCccch
Q psy2261 429 HPNITSW 435 (857)
Q Consensus 429 ~~~~~~~ 435 (857)
.|+|+||
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 3889999
No 61
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=33.02 E-value=2e+02 Score=31.12 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=56.4
Q ss_pred hHHHHHHHHHCCcEE-EEeh---hH-HHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhhHHHHHhC
Q psy2261 19 LLPFAKQLSGLGYTL-VASG---GT-AKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSDQSDMKKM 93 (857)
Q Consensus 19 lvelAr~L~~lGfeI-iATg---GT-Ak~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h~~~l~~~ 93 (857)
.+.||+.|.+.|+++ +.+. +. .+.|++.|.+|..+++-.+++ .+..+-.+.+++.
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~--------------------~d~~~~~~~l~~~ 79 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRY--------------------DDALELINLLEEE 79 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchh--------------------hhHHHHHHHHHhc
Confidence 478999999989885 3332 32 477899999998887654421 1111222333333
Q ss_pred CCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHH
Q psy2261 94 NYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAK 155 (857)
Q Consensus 94 ~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~ 155 (857)
..|+||+.-|-|..... ..+| .+...++++.|..+...
T Consensus 80 ---~~d~vV~D~y~~~~~~~------------------~~~k---~~~~~l~~iDD~~~~~~ 117 (279)
T TIGR03590 80 ---KFDILIVDHYGLDADWE------------------KLIK---EFGRKILVIDDLADRPH 117 (279)
T ss_pred ---CCCEEEEcCCCCCHHHH------------------HHHH---HhCCeEEEEecCCCCCc
Confidence 56999999996643211 1233 23557788888766543
No 62
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=31.95 E-value=1.2e+02 Score=33.69 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHCCc--EE-EEehhH-----HHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCC----C
Q psy2261 16 KTGLLPFAKQLSGLGY--TL-VASGGT-----AKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRN----T 83 (857)
Q Consensus 16 K~glvelAr~L~~lGf--eI-iATgGT-----Ak~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~----~ 83 (857)
.+++.++.+.+.+.+. .+ +.|.|+ ++.|.++|+.-..|| +.++.|..|.-|-.+. -
T Consensus 75 r~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~IS------------lDs~~~e~~~~i~~~g~~~~v 142 (329)
T PRK13361 75 RRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNIS------------LDTLRPELFAALTRNGRLERV 142 (329)
T ss_pred cccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEE------------eccCCHHHhhhhcCCCCHHHH
Confidence 4679999999988763 34 688896 577888898866554 3444555544432221 1
Q ss_pred hhhHHHHHhCCCCceeE
Q psy2261 84 DSDQSDMKKMNYDMVSI 100 (857)
Q Consensus 84 ~~h~~~l~~~~I~~IDl 100 (857)
-+.++.+.+.|+.++-+
T Consensus 143 l~~i~~~~~~Gi~~v~i 159 (329)
T PRK13361 143 IAGIDAAKAAGFERIKL 159 (329)
T ss_pred HHHHHHHHHcCCCceEE
Confidence 34556677888865544
No 63
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=31.67 E-value=3.1e+02 Score=32.08 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=84.7
Q ss_pred EEEecCCCChHHHHHHHHH------CCcEEEEehh-----HHHHHHhCCCCceeccccc--CCCcccCCcccccchhhhc
Q psy2261 10 ILSVSDKTGLLPFAKQLSG------LGYTLVASGG-----TAKALRDENIPVRDVADIT--GAPEMLGGRVKTLHPAVHA 76 (857)
Q Consensus 10 LISVsDK~glvelAr~L~~------lGfeIiATgG-----TAk~L~e~GI~v~~VskvT--gfPEil~GRVKTLHPkIhg 76 (857)
.+-|.|-+.+.++++.|.. .+.-|++.+| +++.+.++|+.+-..++-| ..-++|-..+..-.|-=.+
T Consensus 271 v~~~~~~~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~ 350 (447)
T TIGR02717 271 VIRADSIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVL 350 (447)
T ss_pred eEEeCCHHHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecC
Confidence 3456677788889888874 3578898887 7888899999876555433 1112222223222232222
Q ss_pred cccCCCChhh-HHHHH-hCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhC-CCceEEEeCC--c
Q psy2261 77 GILSRNTDSD-QSDMK-KMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKN-HERVTVICDP--S 151 (857)
Q Consensus 77 GILar~~~~h-~~~l~-~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN-~~~V~Vv~dP--~ 151 (857)
|. ..++. .+.++ -..-+.+|.|+|++.|-.. . + .+++. -.+++++.+. -+-| +++-+ .
T Consensus 351 ~~---~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~--~--~--~~~~a-------~~l~~~~~~~~~KPv-v~~~~gg~ 413 (447)
T TIGR02717 351 GD---ATPERYAKALKTVAEDENVDGVVVVLTPTAM--T--D--PEEVA-------KGIIEGAKKSNEKPV-VAGFMGGK 413 (447)
T ss_pred CC---CCHHHHHHHHHHHHcCCCCCEEEEEccCCcc--C--C--HHHHH-------HHHHHHHHhcCCCcE-EEEecCCc
Confidence 32 11111 11122 1223468999999986421 1 1 12222 2344444443 3455 33433 4
Q ss_pred cHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhhh
Q psy2261 152 DYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDY 187 (857)
Q Consensus 152 DY~~v~~el~~~~~G~~s~~~R~~LA~kAF~~tA~Y 187 (857)
.++...+.|+. .|-....+ -.-|.+||.+...|
T Consensus 414 ~~~~~~~~L~~--~Gip~f~~-p~~A~~al~~~~~~ 446 (447)
T TIGR02717 414 SVDPAKRILEE--NGIPNYTF-PERAVKALSALYRY 446 (447)
T ss_pred cHHHHHHHHHh--CCCCccCC-HHHHHHHHHHHHhh
Confidence 66677777775 34322222 22388888887766
No 64
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=31.62 E-value=39 Score=32.66 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=28.9
Q ss_pred HHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCC
Q psy2261 88 SDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHE 142 (857)
Q Consensus 88 ~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~ 142 (857)
.-++..|+. -++|+|||||..|-.+ .+..+-+-|+.=.-..|+.+++...
T Consensus 39 ~~a~~~gyg--~~~i~NLf~~~~t~p~---~l~~~~~~~~~~N~~~i~~~~~~~~ 88 (136)
T PF07799_consen 39 NFARRWGYG--GVIIVNLFPQRSTDPK---DLKKAPDPIGPENDEHIREALKEAD 88 (136)
T ss_pred HHHhhcCCC--eEEEEEecccccCCHH---HHHhccCcccHhHHHHHHHHHhccC
Confidence 334667777 5788999999876322 1222223343334456777777553
No 65
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=29.89 E-value=72 Score=34.68 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=30.6
Q ss_pred EEEEEecC-----CCChHHHHHHHHHCCcEE--EEehhHHHHHHhCCCCc
Q psy2261 8 LVILSVSD-----KTGLLPFAKQLSGLGYTL--VASGGTAKALRDENIPV 50 (857)
Q Consensus 8 raLISVsD-----K~glvelAr~L~~lGfeI--iATgGTAk~L~e~GI~v 50 (857)
|+|++++. =...+.+++.|.+ |+++ ++|+...+++++.|+++
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~ 49 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKV 49 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcc
Confidence 45666662 3567899999999 9665 56677677778888873
No 66
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=28.94 E-value=1.1e+02 Score=33.66 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHhC-CCceEEEeCCccHHHHHHHHHcCCCCCCCHHHHHHH
Q psy2261 135 RAAAKN-HERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKL 176 (857)
Q Consensus 135 RAAAKN-~~~V~Vv~dP~DY~~v~~el~~~~~G~~s~~~R~~L 176 (857)
+.++|+ ...|.+.++|++|...+...-.-..-.+|.+.|+|-
T Consensus 116 ~~~~~~~lp~~~~~~~~~~~~~~l~~~~~~~~~~~t~ed~~r~ 158 (320)
T TIGR01686 116 RANVKITLPVKTLLCDPAELAAILLFLNELLPLANTKEDRIRA 158 (320)
T ss_pred HHHHHHHCCCCccCCChHHHHHHhcccccccCccCCHHHHHHH
Confidence 555555 667899999999976554322111235666655543
No 67
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=28.60 E-value=66 Score=32.83 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=33.4
Q ss_pred chhHHHHhhhccccce---EEEeeCCeEEeeccCCc-cchhhhhhhcccc
Q psy2261 376 DLTVATIALKYTQSNS---VVYAKNGQVIGIGAGQQ-SRIHCTRLAGDKV 421 (857)
Q Consensus 376 dl~~a~~~~~~~ksn~---v~~~k~~~~vgiG~Gq~-~Rv~~~~lA~~k~ 421 (857)
-++.||+....+..|. +|+.++|++||.|.=++ -+=||...|+.+|
T Consensus 13 Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~a 62 (146)
T COG0117 13 ALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMA 62 (146)
T ss_pred HHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCCCCcHHHHHHHHc
Confidence 3567778788888883 48999999999985321 2237777777776
No 68
>PRK07576 short chain dehydrogenase; Provisional
Probab=28.58 E-value=1.1e+02 Score=31.87 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.8
Q ss_pred CCCccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHH
Q psy2261 3 KNNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKAL 43 (857)
Q Consensus 3 ~~~~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L 43 (857)
.-+.+++||+-...-==..+++.|.+.|+.++.+.-+..-+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~ 46 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKV 46 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 34556888887755444668899999999999987655443
No 69
>PRK06128 oxidoreductase; Provisional
Probab=28.06 E-value=5.3e+02 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=24.6
Q ss_pred ccEEEEEecCCCChHHHHHHHHHCCcEEEEe
Q psy2261 6 GKLVILSVSDKTGLLPFAKQLSGLGYTLVAS 36 (857)
Q Consensus 6 ~graLISVsDK~glvelAr~L~~lGfeIiAT 36 (857)
.+++||+-.+.-==..+|+.|.+.|++++.+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALN 85 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEE
Confidence 3578888887665678889999999998865
No 70
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=27.68 E-value=64 Score=32.91 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=68.3
Q ss_pred CcEEEEe-hhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhc-cccC-CC---ChhhHHHHHhCCCCceeEEEE
Q psy2261 30 GYTLVAS-GGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHA-GILS-RN---TDSDQSDMKKMNYDMVSIVVC 103 (857)
Q Consensus 30 GfeIiAT-gGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhg-GILa-r~---~~~h~~~l~~~~I~~IDlVVV 103 (857)
+..+++. .+|++.|++.|+.+..+-.-.+-.|-| +..|...+-+ -+|. |. .+.=.+.|+++|+.-.-+.|-
T Consensus 73 ~~~i~avG~~Ta~~l~~~G~~~~~~~~~~~~s~~L---~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY 149 (231)
T PF02602_consen 73 NIKIFAVGPKTAEALREYGFQPDFVPSSEGSSEGL---AELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVY 149 (231)
T ss_dssp HSEEEESSHHHHHHHHHTT-EECEE-TTSSSHHHH---HGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECE
T ss_pred CCeEEEEcHHHHHHHHHcCCCccccCCCCCCHHHH---HHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEe
Confidence 6788887 689999999999998766644444444 3333322222 2444 32 355567788888776665554
Q ss_pred ecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHc
Q psy2261 104 NLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEA 162 (857)
Q Consensus 104 NLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~ 162 (857)
.- |=.. ...++.+.++-|.+ +++++++|+-...+++.+..
T Consensus 150 ~~-~~~~-------~~~~~~~~l~~~~~-----------~~v~ftS~~~~~~~~~~~~~ 189 (231)
T PF02602_consen 150 ET-PPEE-------LSPELKEALDRGEI-----------DAVVFTSPSAVRAFLELLKK 189 (231)
T ss_dssp EE-EEHH-------HHHHHHHHHHHTTT-----------SEEEESSHHHHHHHHHHSSG
T ss_pred ec-cccc-------chHHHHHHHHcCCC-----------CEEEECCHHHHHHHHHHhHh
Confidence 44 2111 12344454444433 89999999999998888753
No 71
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=27.55 E-value=2.2e+02 Score=24.95 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=36.0
Q ss_pred HHHHHHhCCCceEEEeCCccHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhh
Q psy2261 133 LLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185 (857)
Q Consensus 133 miRAAAKN~~~V~Vv~dP~DY~~v~~el~~~~~G~~s~~~R~~LA~kAF~~tA 185 (857)
-++.--++-.++..+-||++....++.+.+ +.+.|+++|.+|.++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~el~~~i~~ll~------~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 32 GLREIFEDGEHIITYNDPEELAEKIEYLLE------NPEERRRIAKNARERVL 78 (92)
T ss_pred HHHHHcCCCCeEEEECCHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
Confidence 344445555567777788888888888864 45899999999998887
No 72
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=27.54 E-value=1.6e+02 Score=32.22 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=33.7
Q ss_pred CccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHh
Q psy2261 5 NGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRD 45 (857)
Q Consensus 5 ~~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e 45 (857)
+..++||+-----==+.||++|.++|=+++-||--.+.|.+
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e 44 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAE 44 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHH
Confidence 34578887764434478999999999999999999999988
No 73
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=27.52 E-value=58 Score=37.23 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=59.3
Q ss_pred CccEEEEEec----C----CCChHHHHHHHHHCCcEEEEe--hhH----------HHHHHhCCCCceecccccCCCcccC
Q psy2261 5 NGKLVILSVS----D----KTGLLPFAKQLSGLGYTLVAS--GGT----------AKALRDENIPVRDVADITGAPEMLG 64 (857)
Q Consensus 5 ~~graLISVs----D----K~glvelAr~L~~lGfeIiAT--gGT----------Ak~L~e~GI~v~~VskvTgfPEil~ 64 (857)
.-.++|.|+- | +..+.++.+..+++|+++++- +.| .++|++.||...++..=...-|
T Consensus 27 Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~~~--- 103 (357)
T PF05913_consen 27 GFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGIDGLRLDYGFSGEE--- 103 (357)
T ss_dssp TEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-SEEEESSS-SCHH---
T ss_pred CCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCEEEECCCCCHHH---
Confidence 3458999988 3 345667778889999999985 443 3456677777777765333222
Q ss_pred Ccccccchh-hhccccCCC-ChhhHHHHHhCCCCceeE-EEEecCChhhhccCCCCChhhhhh
Q psy2261 65 GRVKTLHPA-VHAGILSRN-TDSDQSDMKKMNYDMVSI-VVCNLYPFSQTVAKPDCNIPTAVE 124 (857)
Q Consensus 65 GRVKTLHPk-IhgGILar~-~~~h~~~l~~~~I~~IDl-VVVNLYPFe~tv~~~~~~~~e~IE 124 (857)
+..|.-. +.=.+=|-. .++.+++|.++|...=.| .|-|+||=.+| |.+++-.++
T Consensus 104 --ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~T----GLs~~~f~~ 160 (357)
T PF05913_consen 104 --IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYT----GLSEEFFIE 160 (357)
T ss_dssp --HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-----SB-HHHHHH
T ss_pred --HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCC----CCCHHHHHH
Confidence 2233333 111122222 477888888888754444 56799998887 877665554
No 74
>PRK04247 hypothetical protein; Provisional
Probab=27.41 E-value=57 Score=35.61 Aligned_cols=30 Identities=43% Similarity=0.641 Sum_probs=23.5
Q ss_pred eeeecCCCChhHHHHHHHhcCCceeeecCch
Q psy2261 341 DGIICPGITLGAREILEKKKGGKYVILELPE 371 (857)
Q Consensus 341 EViiAP~~~~~A~eiL~~kK~~r~~~l~~~~ 371 (857)
=++|||+|++.|+++|+ +.+++.+.++.|.
T Consensus 208 GilvAp~i~~~A~~ll~-~~Gle~~~l~p~~ 237 (238)
T PRK04247 208 GILVAPSITDRARRLLE-KEGLEFVKLEPPK 237 (238)
T ss_pred EEEECCcCCHHHHHHHH-HcCCeEEEecCCC
Confidence 35799999999999997 4567777776653
No 75
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=27.33 E-value=1.1e+02 Score=35.15 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=70.9
Q ss_pred CCCccEEEEEec---CCCChHHHHHHHHHCCc--EEEEehhHH---HHHHhCCCCceecccccCCCcccCCcccccchhh
Q psy2261 3 KNNGKLVILSVS---DKTGLLPFAKQLSGLGY--TLVASGGTA---KALRDENIPVRDVADITGAPEMLGGRVKTLHPAV 74 (857)
Q Consensus 3 ~~~~graLISVs---DK~glvelAr~L~~lGf--eIiATgGTA---k~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkI 74 (857)
+++..++|+|++ --+|+-++.+.|.+.|+ -|++|+|+- .+.+--|.+. +-|.|+
T Consensus 55 ~~~~~~ifL~~tgamvsaGlr~~i~~Li~~~~VD~iVTTganl~eeD~~k~~g~~~-----y~G~f~------------- 116 (347)
T PRK02492 55 QDKECAVILTLAGSLSSAGCMQVYIDLVRNNMVDAIVATGANIVDQDFFEALGFKH-----YQGSPF------------- 116 (347)
T ss_pred hCCCCeEEEEeccchHHHHHHHHHHHHHHcCCeeEEEECCCCchHHHHHHHcCCCe-----ecCCCC-------------
Confidence 345567899999 37899999999999987 478888852 4544444331 223333
Q ss_pred hccccCCCChhhHHHHHhCCCCceeEEEE---ecCChhhhcc-------CCCCChhhhh----hccc-c--chHHHHHHH
Q psy2261 75 HAGILSRNTDSDQSDMKKMNYDMVSIVVC---NLYPFSQTVA-------KPDCNIPTAV----ENID-I--GGVTLLRAA 137 (857)
Q Consensus 75 hgGILar~~~~h~~~l~~~~I~~IDlVVV---NLYPFe~tv~-------~~~~~~~e~I----EnID-I--GGpsmiRAA 137 (857)
.+-.+|++.||..|-=|++ |+-.||+.+. +...+..|.+ +.|+ . --.|.+++|
T Consensus 117 ----------~dd~~Lr~~ginRIgdv~ip~e~y~~~E~~v~~il~~~~~~~~s~~e~~~~lGk~i~~~~~~e~Sil~~A 186 (347)
T PRK02492 117 ----------VDDAVLRDLYIDRIYDTYIDEEELQVCDHTIAEIANSLEPRPYSSREFIWEMGKYLEENAKKENSLVQKA 186 (347)
T ss_pred ----------CCHHHHHHcCCCcccccccChHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 2345688899988865555 5444444332 2122333332 2332 1 237999999
Q ss_pred HhCCCceEEEe
Q psy2261 138 AKNHERVTVIC 148 (857)
Q Consensus 138 AKN~~~V~Vv~ 148 (857)
+|| +|-|.|
T Consensus 187 yk~--~VPIf~ 195 (347)
T PRK02492 187 YEK--GVPIFC 195 (347)
T ss_pred HHc--CCCEEC
Confidence 998 555443
No 76
>PRK06101 short chain dehydrogenase; Provisional
Probab=27.27 E-value=4.3e+02 Score=27.02 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=27.4
Q ss_pred cEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHh
Q psy2261 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRD 45 (857)
Q Consensus 7 graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e 45 (857)
+++||+-..--==..+++.|.+.|++++.+.-..+.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~ 40 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDE 40 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 567777664322357899999999999988765555543
No 77
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=27.24 E-value=5.5e+02 Score=28.77 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHCCcE---EEEehhHHHHHHhCCCCcee-cccccCCCcccCCcccccchhhhccccCCCChhhHHHH-H-hCCCC
Q psy2261 23 AKQLSGLGYT---LVASGGTAKALRDENIPVRD-VADITGAPEMLGGRVKTLHPAVHAGILSRNTDSDQSDM-K-KMNYD 96 (857)
Q Consensus 23 Ar~L~~lGfe---IiATgGTAk~L~e~GI~v~~-VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h~~~l-~-~~~I~ 96 (857)
...+.++|++ +.++..+..+-++.|..... +++. ++-+-.| |-- ..+-++++ + +.+..
T Consensus 51 ~~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~~~~~~~--~~~~~~g------------i~~--~~~~~~~~~~~~~~~~ 114 (297)
T cd02169 51 INKAYEEGIFHLFLFTKPKNAKFFRGLGFKELANASDE--AVLLENG------------KPG--IEDYLKNLPKPDQPGK 114 (297)
T ss_pred HHHHHHCCCCEEEEEEcccHHHHHHHCCCEEecccCCe--eeEecCC------------chH--HHHHHHHHHhhccCCC
Confidence 3445566765 66666667888899986443 4331 1111111 100 12233334 2 35567
Q ss_pred ceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHcCCCCCCCHHHHHHH
Q psy2261 97 MVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKL 176 (857)
Q Consensus 97 ~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~~~~G~~s~~~R~~L 176 (857)
.|=-+|.++-||- .|=..|+|.|++.+.-+.|+.-|+ + ...++.+.|.+|
T Consensus 115 ~~~~~~~~FDPiH------------------~GHl~ii~~a~~~~d~~~V~i~~~---------~---~~~~~~e~R~~m 164 (297)
T cd02169 115 KIAAIVMNANPFT------------------LGHRYLVEKAAAENDWVHLFVVSE---------D---KSLFSFADRFKL 164 (297)
T ss_pred ceEEEEecCCCCc------------------hHHHHHHHHHHhhCCeEEEEEEcC---------C---CCCCCHHHHHHH
Confidence 7888888888873 234567788888888777777664 1 235788888888
Q ss_pred HHHHHH
Q psy2261 177 ALKAFT 182 (857)
Q Consensus 177 A~kAF~ 182 (857)
...|+.
T Consensus 165 l~~ai~ 170 (297)
T cd02169 165 VKKGTK 170 (297)
T ss_pred HHHHhC
Confidence 877765
No 78
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=25.92 E-value=3.7e+02 Score=27.22 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=38.1
Q ss_pred cCceEEeccccccCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcC
Q psy2261 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHN 851 (857)
Q Consensus 796 l~G~VlaSDAFFPF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG 851 (857)
+.|+.|-.= ++|=.-+......+||+.|+=+..--.+...++.-.+.||....-.
T Consensus 85 l~g~tlYvT-~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~ 139 (151)
T TIGR02571 85 TEGAEIYVT-HFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVP 139 (151)
T ss_pred cCCcEEEEe-CCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeC
Confidence 345555322 6777778888888999988886543344567888888888776544
No 79
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=25.74 E-value=3.8e+02 Score=27.32 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=73.0
Q ss_pred CCChHHHHHHHH------HCCcEEEEe-hhHHHHHHhCCCCceecccccCCCcccCCcccccchh-hh-ccccC-CCC--
Q psy2261 16 KTGLLPFAKQLS------GLGYTLVAS-GGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPA-VH-AGILS-RNT-- 83 (857)
Q Consensus 16 K~glvelAr~L~------~lGfeIiAT-gGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPk-Ih-gGILa-r~~-- 83 (857)
+.++--|.+.|. -.+..+++- ..|++.|++.|+++..+.+- + ..+|-++.|... +. .-||. |..
T Consensus 61 ~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~~~~~~~-~---~~~~l~~~l~~~~~~~~~ili~~~~~~ 136 (249)
T PRK05928 61 KNAVEFLLSALKKKKLKWPKNKKYAAIGEKTALALKKLGGKVVFVPED-G---ESSELLLELPELLLKGKRVLYLRGNGG 136 (249)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCEEEEECHHHHHHHHHcCCCccccCCC-C---cChHHHHhChhhhcCCCEEEEECCCCC
Confidence 555666666654 235677777 78999999999987765432 1 223446666554 32 23554 432
Q ss_pred -hhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHHHc
Q psy2261 84 -DSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEA 162 (857)
Q Consensus 84 -~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el~~ 162 (857)
+.-.+.|+++|+.. +.+-+|- ++.. ....++.. .....+.-+++++++|+-.+.+++.+..
T Consensus 137 ~~~l~~~L~~~G~~v---~~~~~Y~---~~~~-~~~~~~~~-----------~~~~~~~~d~ivftS~~~v~~~~~~~~~ 198 (249)
T PRK05928 137 REVLGDTLEERGAEV---DECEVYE---RVPP-KLDGAELL-----------ARLQSGEVDAVIFTSPSTVRAFFSLAPE 198 (249)
T ss_pred HHHHHHHHHHCCCEE---eEEEEEE---eeCC-CCChHHHH-----------HHHHhCCCCEEEECCHHHHHHHHHHhcc
Confidence 33446677888753 4444442 2111 01111111 1111456788999999999999988753
No 80
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=25.50 E-value=2.9e+02 Score=27.76 Aligned_cols=124 Identities=16% Similarity=0.209 Sum_probs=69.9
Q ss_pred CCCChHHHHHHHHH------CCcEEEEe-hhHHHHHHhCCCCceec-ccccCCCcccCCcccccchh--hhccccC-CC-
Q psy2261 15 DKTGLLPFAKQLSG------LGYTLVAS-GGTAKALRDENIPVRDV-ADITGAPEMLGGRVKTLHPA--VHAGILS-RN- 82 (857)
Q Consensus 15 DK~glvelAr~L~~------lGfeIiAT-gGTAk~L~e~GI~v~~V-skvTgfPEil~GRVKTLHPk--IhgGILa-r~- 82 (857)
.+.++.-+.+.+.+ .+..+++- ..|++.|++.|+++..+ ...+ .+|-++.|... -..=||. +.
T Consensus 57 S~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~-----~~~L~~~i~~~~~~~~~il~~~g~ 131 (239)
T cd06578 57 SPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGD-----SEGLLELLELQDGKGKRILRPRGG 131 (239)
T ss_pred CHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccC-----HHHHHHHHHhcCCCCCEEEEEcCc
Confidence 45566666666653 56667776 78999999999998876 2221 22334444443 2233333 32
Q ss_pred --ChhhHHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhccccchHHHHHHHHhCCCceEEEeCCccHHHHHHHH
Q psy2261 83 --TDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDI 160 (857)
Q Consensus 83 --~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~v~~el 160 (857)
.+.-.+.|+++|.....+++--.-|-..+ ....+.+++ ...+++++++|+..+.+.+.+
T Consensus 132 ~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~-----~~~~~~l~~--------------~~~~~iiftS~~~v~~f~~~~ 192 (239)
T cd06578 132 RAREDLAEALRERGAEVDEVEVYRTVPPDLD-----AELLELLEE--------------GAIDAVLFTSPSTVRNLLELL 192 (239)
T ss_pred chhHHHHHHHHHCCCEEEEEEEEEEECCCCc-----HHHHHHHHc--------------CCCcEEEEeCHHHHHHHHHHH
Confidence 24455567777876554444332221110 011222222 222389999999999999888
Q ss_pred Hc
Q psy2261 161 EA 162 (857)
Q Consensus 161 ~~ 162 (857)
..
T Consensus 193 ~~ 194 (239)
T cd06578 193 GK 194 (239)
T ss_pred hh
Confidence 64
No 81
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=25.20 E-value=1e+02 Score=32.14 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=28.4
Q ss_pred hHHHH-cCCeEEecCCCCCCcHHHHHHHHhCCcE-EEEcC
Q psy2261 814 DRAVL-SGAKFVSAPGGSNNDQSVIDAANYHKLT-LIHHN 851 (857)
Q Consensus 814 d~Aa~-~GV~aIiQPGGSiRD~EVI~Aane~gIa-MvFTG 851 (857)
+...+ .|++.+|--|| |+++++++|.+||-. +.++|
T Consensus 79 ~~ll~~~Gv~~~IGKG~--~~~~~~~a~k~~gaVYl~~~G 116 (168)
T TIGR00723 79 PELLEKLGVMAIIGKGG--MSKEVVEACRKYKAVYLAFPG 116 (168)
T ss_pred HHHHHhCCcEEEEECCC--CCHHHHHHHHHCCEEEEEcCc
Confidence 44455 69999999987 889999999999855 44544
No 82
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=25.17 E-value=97 Score=33.21 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHcCCeEEecCCCCCCcHHHHHHHHhCCcE-EEEcC
Q psy2261 815 RAVLSGAKFVSAPGGSNNDQSVIDAANYHKLT-LIHHN 851 (857)
Q Consensus 815 ~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIa-MvFTG 851 (857)
...+.|++.+|--|| |+++|+++|.+||-. +.++|
T Consensus 93 ~l~~~G~~~~IGKG~--~~~~~~~a~k~~gavYl~~~G 128 (204)
T PRK08228 93 FIEQTGVKLIVGKGG--MGPGTEEGCQEFKALHCVFPA 128 (204)
T ss_pred HHHhCCcEEEEECCC--CCHHHHHHHHHcCEEEEEcCc
Confidence 334459999999998 899999999999854 44444
No 83
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=24.87 E-value=90 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=34.1
Q ss_pred CCccCCCCEEecCCccCchhhhhhcccceeeeecCCCChhHHHHHHHhcCCceee
Q psy2261 312 DRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI 366 (857)
Q Consensus 312 Dp~SAFGgIIa~n~~~d~e~A~~i~~~f~EViiAP~~~~~A~eiL~~kK~~r~~~ 366 (857)
++++|+|++|..|+.. -+|-|+|+++|++..+.-=+..+..
T Consensus 96 ~k~nAlGN~Il~ND~~--------------Alvhp~l~~~a~k~I~d~LgVev~r 136 (222)
T COG1976 96 TKLNALGNLILANDKG--------------ALVHPDLSDEAEKEIEDVLGVEVVR 136 (222)
T ss_pred ccccccccEEEecCce--------------eEecCccCHHHHHHHHhhcceEEEE
Confidence 5789999999999987 5788999999999888665555444
No 84
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=24.78 E-value=70 Score=37.75 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=41.7
Q ss_pred CCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCC
Q psy2261 809 FRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRL 854 (857)
Q Consensus 809 F~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~Rh 854 (857)
-.|.+..|.+.|+.+||=.||.--++++|+.|++.|++.+.|..-.
T Consensus 190 r~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt 235 (546)
T PRK14869 190 REDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDT 235 (546)
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccH
Confidence 4577889999999999999999999999999999999999998643
No 85
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=24.67 E-value=66 Score=32.81 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=29.7
Q ss_pred cCCCCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEE
Q psy2261 808 PFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLI 848 (857)
Q Consensus 808 PF~D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMv 848 (857)
.-+|.++.|.+.|...|+-||. |.+++++|+++|+..+
T Consensus 64 ~~~~~~~~a~~~Ga~~i~~p~~---~~~~~~~~~~~~~~~i 101 (190)
T cd00452 64 LTPEQADAAIAAGAQFIVSPGL---DPEVVKAANRAGIPLL 101 (190)
T ss_pred CCHHHHHHHHHcCCCEEEcCCC---CHHHHHHHHHcCCcEE
Confidence 3477888888899888887753 6788888888887644
No 86
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=24.35 E-value=1.1e+02 Score=28.49 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCCChHHHHHHHHHCCcE--EEEehhHHHHHHhCCCCceecccc
Q psy2261 15 DKTGLLPFAKQLSGLGYT--LVASGGTAKALRDENIPVRDVADI 56 (857)
Q Consensus 15 DK~glvelAr~L~~lGfe--IiATgGTAk~L~e~GI~v~~Vskv 56 (857)
|=.-++.+++.|.+.|.+ +.+.++-.+.+++.|++...+..-
T Consensus 11 hv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 11 HVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSC
T ss_pred HHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCC
Confidence 334468899999999988 566688888899999999987654
No 87
>PLN02257 phosphoribosylamine--glycine ligase
Probab=23.85 E-value=31 Score=39.93 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=69.9
Q ss_pred EecCCCChHHHHHHHHH----CCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhhH
Q psy2261 12 SVSDKTGLLPFAKQLSG----LGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSDQ 87 (857)
Q Consensus 12 SVsDK~glvelAr~L~~----lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h~ 87 (857)
+..|.+.++++|+...- -|.|.--..|.++.|++.|+++. .|...+--|.+++..-.
T Consensus 47 ~~~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d~l~~~Gi~~~-------------------Gps~~aa~l~~dK~~~K 107 (434)
T PLN02257 47 DISDSAAVISFCRKWGVGLVVVGPEAPLVAGLADDLVKAGIPTF-------------------GPSAEAAALEGSKNFMK 107 (434)
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHCCCCEE-------------------CChHHHHHHHcCHHHHH
Confidence 55677888888876433 23343333577888888887642 34444445555555556
Q ss_pred HHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhcc-ccchHHHHHHHHhCC--CceEEEeCCccHHHHHHHH
Q psy2261 88 SDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI-DIGGVTLLRAAAKNH--ERVTVICDPSDYAKVIKDI 160 (857)
Q Consensus 88 ~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnI-DIGGpsmiRAAAKN~--~~V~Vv~dP~DY~~v~~el 160 (857)
+-|+++||+...-.++. +.+++.+-+ .+|.|-+|.+. .-+ +-|.++.++++....++++
T Consensus 108 ~~l~~~GIptp~~~~~~-------------~~~e~~~~~~~~g~PvVVKp~-~~~~GkGV~iv~~~~el~~a~~~~ 169 (434)
T PLN02257 108 DLCDKYKIPTAKYETFT-------------DPAAAKKYIKEQGAPIVVKAD-GLAAGKGVVVAMTLEEAYEAVDSM 169 (434)
T ss_pred HHHHHcCCCCCCeEEeC-------------CHHHHHHHHHHcCCCEEEEcC-CCCCCCCEEEECCHHHHHHHHHHH
Confidence 67899999976644331 233333333 35778777765 222 4678888777766655554
No 88
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.67 E-value=5.4e+02 Score=26.63 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred cEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhh
Q psy2261 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSD 86 (857)
Q Consensus 7 graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h 86 (857)
+++||+-..--==..+++.|.+.|++++++.-+..-+... .+|.. +-+=+ .+++.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~------------------~~~~~-----~~~D~--~d~~~ 59 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI------------------PGVEL-----LELDV--TDDAS 59 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc------------------CCCee-----EEeec--CCHHH
Confidence 4688887754444578899999999999886543322210 01111 11111 13333
Q ss_pred HHHHHh---CCCCceeEEEEecCChhhhccCCCCChhhhhhcccc---chHHHHHHHH-----hCCCceEEEeCCc
Q psy2261 87 QSDMKK---MNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDI---GGVTLLRAAA-----KNHERVTVICDPS 151 (857)
Q Consensus 87 ~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnIDI---GGpsmiRAAA-----KN~~~V~Vv~dP~ 151 (857)
++++-+ ....++|+||.|--++...-. ...+.++.-+.+++ |=..+++++. ++..+++.+++..
T Consensus 60 ~~~~~~~~~~~~g~~d~li~~ag~~~~~~~-~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~ 134 (270)
T PRK06179 60 VQAAVDEVIARAGRIDVLVNNAGVGLAGAA-EESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVL 134 (270)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCCcCc-ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 333221 123579999999865432111 12345555555554 4445666542 3566777776643
No 89
>PLN02448 UDP-glycosyltransferase family protein
Probab=23.39 E-value=1.3e+02 Score=35.00 Aligned_cols=88 Identities=14% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCCChHHHHHHHHHC--CcE--EEEehhHHHHHHhC----CCCceecccccCCCcccCCcccccchhhhccccCCCChhh
Q psy2261 15 DKTGLLPFAKQLSGL--GYT--LVASGGTAKALRDE----NIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSD 86 (857)
Q Consensus 15 DK~glvelAr~L~~l--Gfe--IiATgGTAk~L~e~----GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h 86 (857)
+=.-+++||+.|... |+. +++|....+.++.. ||....+.. |.|+-++.. ..+ ++.....+. ....+
T Consensus 23 Hi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~--~~p~~~~~~-~~~-~~~~~~~~~-~~~~~ 97 (459)
T PLN02448 23 HINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPN--VIPSELVRA-ADF-PGFLEAVMT-KMEAP 97 (459)
T ss_pred cHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCC--CCCCccccc-cCH-HHHHHHHHH-HhHHH
Confidence 666789999999988 765 57888888888885 777766654 456544311 111 122222221 12223
Q ss_pred HHHH-HhCCCCceeEEEEecCCh
Q psy2261 87 QSDM-KKMNYDMVSIVVCNLYPF 108 (857)
Q Consensus 87 ~~~l-~~~~I~~IDlVVVNLYPF 108 (857)
.+++ ++.. .++|+||.++.-+
T Consensus 98 ~~~~l~~~~-~~~~~VI~D~~~~ 119 (459)
T PLN02448 98 FEQLLDRLE-PPVTAIVADTYLF 119 (459)
T ss_pred HHHHHHhcC-CCcEEEEECCccH
Confidence 3333 3333 6789999985443
No 90
>PF05683 Fumerase_C: Fumarase C-terminus; InterPro: IPR004647 This entry represents various Fe-S type hydro-lyases, including the beta subunit from both L-tartrate dehydratase (TtdB; EC:4.2.1.32) and class 2 fumarate hydratase (FumC; (4.2.1.2 from EC) []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of the archaeal proteins in this group is unknown.; GO: 0016836 hydro-lyase activity; PDB: 2ISB_A.
Probab=23.33 E-value=97 Score=33.20 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=22.8
Q ss_pred hHHHHcCCeEEecCCCCCCcHHHHHHHHhCC-cEEEEcC
Q psy2261 814 DRAVLSGAKFVSAPGGSNNDQSVIDAANYHK-LTLIHHN 851 (857)
Q Consensus 814 d~Aa~~GV~aIiQPGGSiRD~EVI~Aane~g-IaMvFTG 851 (857)
+...+.|++.+|--|| |++++++||.+|| +=+++.|
T Consensus 116 ~~l~~~Gv~~~IGKG~--~~~~~~~a~~~~gavYl~~~G 152 (205)
T PF05683_consen 116 ELLEKLGVRAIIGKGG--RSPEVVEACKKYGAVYLAAPG 152 (205)
T ss_dssp HHHHH-S-EEEEEBS-----HHHHHHHTT-TEEEEEE-S
T ss_pred HHHHhcCeEEEEecCC--CCHHHHHHHHhccEEEEEecc
Confidence 3445679999999998 7899999999997 4445544
No 91
>PRK04247 hypothetical protein; Provisional
Probab=23.27 E-value=79 Score=34.53 Aligned_cols=28 Identities=39% Similarity=0.577 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChhHHHHHHhccCCcEEEE
Q psy2261 549 VSDGIICPGITLGAREILEKKKGGKYVIL 577 (857)
Q Consensus 549 f~EvIIAP~fe~eALeiL~~KKnlR~~iL 577 (857)
.-=++|||+|++.|+++| ++.+++++.|
T Consensus 206 VRGilvAp~i~~~A~~ll-~~~Gle~~~l 233 (238)
T PRK04247 206 VRGILVAPSITDRARRLL-EKEGLEFVKL 233 (238)
T ss_pred cEEEEECCcCCHHHHHHH-HHcCCeEEEe
Confidence 455789999999999988 5668885544
No 92
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=22.99 E-value=2.6e+02 Score=30.26 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHCCcEEEE-eh-------hHHHHHHh-CCCCceecccccCCCcccCCcccccchhh-----hc-cccC
Q psy2261 16 KTGLLPFAKQLSGLGYTLVA-SG-------GTAKALRD-ENIPVRDVADITGAPEMLGGRVKTLHPAV-----HA-GILS 80 (857)
Q Consensus 16 K~glvelAr~L~~lGfeIiA-Tg-------GTAk~L~e-~GI~v~~VskvTgfPEil~GRVKTLHPkI-----hg-GILa 80 (857)
++++.++.+.|.+.|++|+= |+ .|++.|.+ .|+|...- |+.++.|....=|++. ++ -|+.
T Consensus 116 ~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~-----f~vil~gd~~~K~~K~~~l~~~~i~I~I 190 (237)
T PRK11009 116 KEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNM-----NPVIFAGDKPGQYTKTQWLKKKNIRIFY 190 (237)
T ss_pred hHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccc-----eeEEEcCCCCCCCCHHHHHHhcCCeEEE
Confidence 45699999999999999874 43 37888776 89974431 2334444421112121 11 1222
Q ss_pred CCChhhHHHHHhCCCCcee
Q psy2261 81 RNTDSDQSDMKKMNYDMVS 99 (857)
Q Consensus 81 r~~~~h~~~l~~~~I~~ID 99 (857)
-|...|+...++.||..|=
T Consensus 191 GDs~~Di~aA~~AGi~~I~ 209 (237)
T PRK11009 191 GDSDNDITAAREAGARGIR 209 (237)
T ss_pred cCCHHHHHHHHHcCCcEEE
Confidence 4667888888999998773
No 93
>PRK06500 short chain dehydrogenase; Provisional
Probab=22.73 E-value=1.4e+02 Score=30.30 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCCCCccEEEEEecCCCChHHHHHHHHHCCcEEEEehhHHHHH
Q psy2261 1 MEKNNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKAL 43 (857)
Q Consensus 1 ~~~~~~graLISVsDK~glvelAr~L~~lGfeIiATgGTAk~L 43 (857)
|.+-..+++||+-...-=-..+++.|.+.|++++.+.-...-+
T Consensus 1 m~~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~ 43 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASL 43 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 4443446889988876666788999999999999886543333
No 94
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=22.60 E-value=1.1e+02 Score=28.76 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=27.6
Q ss_pred CeEEecCCCCCCcHHHHHHHHhCCcEEEEcCCCC
Q psy2261 821 AKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRL 854 (857)
Q Consensus 821 V~aIiQPGGSiRD~EVI~Aane~gIaMvFTG~Rh 854 (857)
+..++..||+.. +++++.|+++++.|+..|.|.
T Consensus 81 ~~~~~~~g~~~~-~~I~~~a~~~~~dlIV~Gs~g 113 (146)
T cd01989 81 CEDVVLEDDDVA-KAIVEYVADHGITKLVMGASS 113 (146)
T ss_pred EEEEEEeCCcHH-HHHHHHHHHcCCCEEEEeccC
Confidence 467888898875 669999999999999999763
No 95
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=22.33 E-value=2.9e+02 Score=29.73 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=29.3
Q ss_pred ccccCceeeeccccCHHHHHHhccceEEEEEcCCCChhHHHHHHhccCCc
Q psy2261 524 MSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGK 573 (857)
Q Consensus 524 vSAFGgiIA~Nr~vD~~tA~~i~~~f~EvIIAP~fe~eALeiL~~KKnlR 573 (857)
+.+.|..+.+|.. =+++-|+++++.++.++.-=++.
T Consensus 142 ~~avGn~iv~Nd~--------------g~LvhP~~s~ee~~~i~d~L~V~ 177 (220)
T cd00527 142 IKTVGSAGVLTNK--------------GGLVHPKTSDEELEELSELFKVP 177 (220)
T ss_pred cccceeEEEEecc--------------EEEECCCCCHHHHHHHHHHhCCc
Confidence 5678888888864 36999999999999998766666
No 96
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=22.27 E-value=31 Score=38.92 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=67.1
Q ss_pred EEecCCCChHHHHHHHHH----CCcEEEEehhHHHHHHhCCCCceecccccCCCcccCCcccccchhhhccccCCCChhh
Q psy2261 11 LSVSDKTGLLPFAKQLSG----LGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAGILSRNTDSD 86 (857)
Q Consensus 11 ISVsDK~glvelAr~L~~----lGfeIiATgGTAk~L~e~GI~v~~VskvTgfPEil~GRVKTLHPkIhgGILar~~~~h 86 (857)
++..|.+.++++++...- -|.+.....|.++.|++.||++. .|...+--+.+++..-
T Consensus 11 ~~~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~~~-------------------g~s~~a~~l~~dK~~~ 71 (379)
T PRK13790 11 ISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVF-------------------GPNKQAAQIEGSKLFA 71 (379)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCcEE-------------------CCCHHHHHHhCCHHHH
Confidence 344577778888776422 23333333466777777777642 3333344444555444
Q ss_pred HHHHHhCCCCceeEEEEecCChhhhccCCCCChhhhhhcc-ccchHHHHHHHHhC-CCceEEEeCCccHHHHHHHH
Q psy2261 87 QSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI-DIGGVTLLRAAAKN-HERVTVICDPSDYAKVIKDI 160 (857)
Q Consensus 87 ~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e~IEnI-DIGGpsmiRAAAKN-~~~V~Vv~dP~DY~~v~~el 160 (857)
.+-|+++||+...-..++ +.+++.+.+ .+|.|-+|.+.--- -+.|.++.++++....++++
T Consensus 72 k~~l~~~gIptp~~~~~~-------------~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~ 134 (379)
T PRK13790 72 KKIMEKYNIPTADYKEVE-------------RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIM 134 (379)
T ss_pred HHHHHHCCCCCCCEEEEC-------------CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 566899999976543321 233443333 35778777764211 14678887777766666654
No 97
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.00 E-value=56 Score=35.45 Aligned_cols=32 Identities=34% Similarity=0.611 Sum_probs=25.5
Q ss_pred HHHHHHhhccccceEEEeeCCeEEeecCCCCchhHHHHHH
Q psy2261 683 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 722 (857)
Q Consensus 683 l~a~~~~k~vkSNsIv~akdg~tvGIGaGQ~sRV~~~riA 722 (857)
+.|+.++.|+++ |++||+|+|.+-.--.=+++
T Consensus 9 ~aa~~A~~~v~~--------gmviGlGTGST~~~fI~~Lg 40 (227)
T COG0120 9 AAAKAALEYVKD--------GMVIGLGTGSTAAYFIEALG 40 (227)
T ss_pred HHHHHHHHHhcC--------CCEEEEcCcHHHHHHHHHHH
Confidence 578888888887 88899999988776555555
No 98
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.92 E-value=89 Score=32.86 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCHhHHHHcCCeEEecCCCCCCcHHHHHHHHhCCcEEEE
Q psy2261 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIH 849 (857)
Q Consensus 811 D~Vd~Aa~~GV~aIiQPGGSiRD~EVI~Aane~gIaMvF 849 (857)
|-++.|.++|+..|+-|+ .|.+++++|.+.|+..+.
T Consensus 74 ~~~~~a~~aGA~fivsp~---~~~~v~~~~~~~~~~~~~ 109 (206)
T PRK09140 74 EQVDRLADAGGRLIVTPN---TDPEVIRRAVALGMVVMP 109 (206)
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHCCCcEEc
Confidence 478999999999999998 788999999999987654
No 99
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=21.70 E-value=1.5e+02 Score=32.78 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHCCcEE--EEehhHHHHHHhCCCCceecccccCC
Q psy2261 15 DKTGLLPFAKQLSGLGYTL--VASGGTAKALRDENIPVRDVADITGA 59 (857)
Q Consensus 15 DK~glvelAr~L~~lGfeI--iATgGTAk~L~e~GI~v~~VskvTgf 59 (857)
|=.-++.+|+.|.+.|+++ ++++.-.+.+++.|+.+..+......
T Consensus 8 hv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~ 54 (392)
T TIGR01426 8 HVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPP 54 (392)
T ss_pred cccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCcc
Confidence 4455789999999999976 45677788899999998877654433
No 100
>PLN02173 UDP-glucosyl transferase family protein
Probab=21.69 E-value=1.4e+02 Score=34.96 Aligned_cols=107 Identities=17% Similarity=0.271 Sum_probs=58.1
Q ss_pred CCCCCccEEEEEec---CCCChHHHHHHHHHCCcEE--EEehhHHHHHHh---CCCCceecccccCCCcc-cCCcccccc
Q psy2261 1 MEKNNGKLVILSVS---DKTGLLPFAKQLSGLGYTL--VASGGTAKALRD---ENIPVRDVADITGAPEM-LGGRVKTLH 71 (857)
Q Consensus 1 ~~~~~~graLISVs---DK~glvelAr~L~~lGfeI--iATgGTAk~L~e---~GI~v~~VskvTgfPEi-l~GRVKTLH 71 (857)
|||.+..-+++..- .=.-+++||+.|...|+.| +.|....+.+.. .+|.+..+.+ |+|+- .+ + +.+
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd--glp~~~~~-~--~~~ 75 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD--GYDQGGFS-S--AGS 75 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC--CCCCcccc-c--ccC
Confidence 56655333444333 4566889999999999876 788887776642 2466666653 77752 11 1 222
Q ss_pred -hhhhccccCCCChhhHHH-HHhC--CCCceeEEEEec-CChhhhcc
Q psy2261 72 -PAVHAGILSRNTDSDQSD-MKKM--NYDMVSIVVCNL-YPFSQTVA 113 (857)
Q Consensus 72 -PkIhgGILar~~~~h~~~-l~~~--~I~~IDlVVVNL-YPFe~tv~ 113 (857)
|....... +.....+++ |+.+ +-.|++.||.++ .||...|+
T Consensus 76 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA 121 (449)
T PLN02173 76 VPEYLQNFK-TFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLA 121 (449)
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHH
Confidence 22222221 122223322 2332 225789999987 55544443
No 101
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=1.5e+02 Score=33.61 Aligned_cols=51 Identities=29% Similarity=0.387 Sum_probs=42.0
Q ss_pred ccEEEEEecCCCChHHHHHHHHHCC--cEEEEehh--------HHHHHHhCCCCceecccc
Q psy2261 6 GKLVILSVSDKTGLLPFAKQLSGLG--YTLVASGG--------TAKALRDENIPVRDVADI 56 (857)
Q Consensus 6 ~graLISVsDK~glvelAr~L~~lG--feIiATgG--------TAk~L~e~GI~v~~Vskv 56 (857)
.|.++++.++-..++++.+...+.| |+++.|++ |++.|+++||+++.|.+-
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech
Confidence 4567888887777888887777776 79999986 899999999999988764
No 102
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=20.06 E-value=35 Score=29.82 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHhCC
Q psy2261 830 SNNDQSVIDAANYHK 844 (857)
Q Consensus 830 SiRD~EVI~Aane~g 844 (857)
|++|+|||+.|.+.|
T Consensus 26 SV~~~eV~~YC~~~G 40 (57)
T PF08727_consen 26 SVDSPEVREYCEEQG 40 (57)
T ss_dssp HH--HHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHCC
Confidence 789999999999998
Done!