RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2261
(857 letters)
>gnl|CDD|223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only
IMP cyclohydrolase domain in Aful) [Nucleotide transport
and metabolism].
Length = 515
Score = 488 bits (1259), Expect = e-164
Identities = 189/479 (39%), Positives = 253/479 (52%), Gaps = 82/479 (17%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
K +LSVSDKTG++ FAK L LG ++++GGTAK L + IPV +V+DITG PEML GR
Sbjct: 3 KRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDGR 62
Query: 67 VKTLHPAVHAGILS-RNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
VKTLHP +H GIL+ R+ D + +++ + + +VV NLYPF +TVAKP + AVEN
Sbjct: 63 VKTLHPKIHGGILARRDKDEHMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAVEN 122
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185
IDIGG T+LRAAAKNH+ VTV+ DP+DYA V+++++A+ E S RK+LA KAF HT+
Sbjct: 123 IDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKAN--GELSLATRKRLAAKAFEHTA 180
Query: 186 DYDTNIVDYFRKQYSPNEAQ---------ISLRYGMNPHQSPAQIFTTLDK---LPIKVL 233
YD I +YF + + LRYG NPHQS A K K L
Sbjct: 181 AYDAAIANYFSELLGGEFPEQLNLSFTKKQDLRYGENPHQSAAFYRDGNAKGGVATAKQL 240
Query: 234 NGQPG-FINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVE 292
G+ + N+ DA W+LVKE PA A KH +P G AV +
Sbjct: 241 QGKELSYNNIADADAAWELVKEFDEP--GPACAIVKHANPCGVAV-------------GD 285
Query: 293 DLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGA 352
+ + AY RA AD S+FG IAL+ E D TAE I + + II P T A
Sbjct: 286 TIAE-------AYKRAYEADPTSAFGGIIALNREVDVETAEAISKIFLEVIIAPSYTEEA 338
Query: 353 REILEKKKGGKYVILELPEF---------------------------------------- 372
EIL KKK +L +
Sbjct: 339 LEILAKKK--NLRVLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMIDEAELKVVTKRQPT 396
Query: 373 --AIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHH 429
+ DL A +K+ +SN++VYAK+GQ +GIGAGQ SR+ R+A +K + +R H
Sbjct: 397 EQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLRAH 455
Score = 180 bits (459), Expect = 9e-49
Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 509 SELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEK 568
+A AY RA AD S+FG IAL+ E D TAE I + + II P T A EIL K
Sbjct: 285 DTIAEAYKRAYEADPTSAFGGIIALNREVDVETAEAISKIFLEVIIAPSYTEEALEILAK 344
Query: 569 KKGGKYVILEVDP-NYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAI 627
KK +L + P + +E ++V G L Q+R++ + +V++ + E +
Sbjct: 345 KK--NLRVLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMIDEAELK-VVTKRQ-PTEQEL 400
Query: 628 RDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIR 680
DL A +K+ +SN++VYAK+GQ +GIGAGQ SR+ R+A +K + +R
Sbjct: 401 EDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLR 453
Score = 86.9 bits (216), Expect = 1e-17
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 788 EKA-DFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLT 846
EKA D HG +ASDAFFPF ID A +G K + PGGS DQ VI AA+ H +
Sbjct: 445 EKAGDAGLRAHGAVLASDAFFPFPDGIDAAAKAGIKAIIQPGGSIRDQEVIAAADEHGIA 504
Query: 847 LIHHNTRLFHH 857
++ R F H
Sbjct: 505 MVFTGVRHFRH 515
>gnl|CDD|232936 TIGR00355, purH, phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase. PurH is
bifunctional: IMP cyclohydrolase (EC 3.5.4.10);
phosphoribosylaminoimidazolecarboxamide
formyltransferase (EC 2.1.2.3) Involved in purine
ribonucleotide biosynthesis. The IMP cyclohydrolase
activity is in the N-terminal region [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 511
Score = 467 bits (1203), Expect = e-156
Identities = 186/509 (36%), Positives = 257/509 (50%), Gaps = 95/509 (18%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+ +LSVSDKTG++ FA+ L G L+++GGTAK L + +PV +V+D TG PEM+ GR
Sbjct: 1 RRALLSVSDKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGR 60
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHP VH GIL+R D D +D+++ + + +VV NLYPF +TVAKP + AVENI
Sbjct: 61 VKTLHPKVHGGILARRGDDDDADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVENI 120
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGG T+LRAAAKNH VT++ DP DY+ ++ E S +R LA+KAF HT+
Sbjct: 121 DIGGPTMLRAAAKNHADVTILVDPKDYSAILS--ELDEQGSISLALRFDLAIKAFEHTAA 178
Query: 187 YDTNIVDYFRKQYSPNE---------AQISLRYGMNPHQSPAQIFTTLDKLPI----KVL 233
YD I +YF K E + +LRYG NPHQ A T K + L
Sbjct: 179 YDAAIANYFGKLVGEKEPRQFNLNFTKKQTLRYGENPHQKAAFYVTQNVKEGSVATAEQL 238
Query: 234 NGQ-PGFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVE 292
G+ + N+ DA ++VKE + PAA KH +P G A+ + + D
Sbjct: 239 QGKELSYNNIADADAALEIVKE----FDEPAAVIVKHANPCGVALGKTILD--------- 285
Query: 293 DLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGA 352
AY RA GAD S+FG IAL+ E D TA+ I R+ + II PG + A
Sbjct: 286 -----------AYDRAFGADPTSAFGGIIALNRELDVPTAKAIVRQFLEVIIAPGYSAEA 334
Query: 353 REILEKKKGGKYVIL----------------------------------------ELPEF 372
EIL KKK + +IL + E
Sbjct: 335 LEILAKKKNLRVLILGIWANRVPELDFKRVNGGLLVQDRDDGMVDQSTLKVVTKRQPTEQ 394
Query: 373 AIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNI 432
+ DL A K+ +SN++VYAKN +G+GAGQ SR+ ++AG K D+
Sbjct: 395 ELIDLLFAWKVAKHVKSNAIVYAKNNMTVGVGAGQMSRVGSAKIAGIKADD--------- 445
Query: 433 TSWKFRKGVKRAEKSNAIDNYILGTIGKD 461
+G++ S A D + G +
Sbjct: 446 ------EGLEAKGSSLASDAFFPFRDGVE 468
Score = 192 bits (490), Expect = 5e-53
Identities = 90/347 (25%), Positives = 130/347 (37%), Gaps = 118/347 (34%)
Query: 511 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKK 570
+ AY RA GAD S+FG IAL+ E D TA+ I R+ + II PG + A EIL KKK
Sbjct: 283 ILDAYDRAFGADPTSAFGGIIALNRELDVPTAKAIVRQFLEVIIAPGYSAEALEILAKKK 342
Query: 571 GGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIRDL 630
+ +IL + N P ++ ++V G L Q R++ V
Sbjct: 343 NLRVLILGIWANRVPE-LDFKRVNGGLLVQDRDDGMVDQSTL------------------ 383
Query: 631 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALK 690
VV + E + DL A K
Sbjct: 384 -------------KVVTKRQ-----------------------PTEQELIDLLFAWKVAK 407
Query: 691 YTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAE 750
+ +SN++VYAKN +G+GAGQ SR+ ++AG K D+ +G++
Sbjct: 408 HVKSNAIVYAKNNMTVGVGAGQMSRVGSAKIAGIKADD---------------EGLEAKG 452
Query: 751 KSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFR 810
S ASDAFFPFR
Sbjct: 453 SSL------------------------------------------------ASDAFFPFR 464
Query: 811 ANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFHH 857
++ A +G + PGGS D+ I AA+ H + ++ R F H
Sbjct: 465 DGVEEAAAAGITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRHFRH 511
>gnl|CDD|180841 PRK07106, PRK07106, 5-aminoimidazole-4-carboxamide ribonucleotide
transformylase; Provisional.
Length = 390
Score = 408 bits (1050), Expect = e-135
Identities = 173/335 (51%), Positives = 214/335 (63%), Gaps = 46/335 (13%)
Query: 205 QISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDALNGWQLVKELKTALNLPAA 264
++ L+YG NP+Q PA+IF +LPI+VLNG+PG+IN LDALN WQLVKELK A LPAA
Sbjct: 3 ELELKYGCNPNQKPARIFMKEGELPIEVLNGRPGYINFLDALNSWQLVKELKEATGLPAA 62
Query: 265 ASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALS 324
ASFKH SPAGAAV L+D K V+D+E +S LA AYARARGADRMSS+GDF ALS
Sbjct: 63 ASFKHVSPAGAAVGLPLSDTLKKIYFVDDME--LSPLACAYARARGADRMSSYGDFAALS 120
Query: 325 DECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVIL----------------- 367
D CD TA+++ REVSDGII PG T A EIL+ KK G Y I+
Sbjct: 121 DVCDVETAKLLKREVSDGIIAPGYTPEALEILKAKKKGNYNIIKIDPNYEPAPIETKDVF 180
Query: 368 --------------------------ELPEFAIRDLTVATIALKYTQSNSVVYAKNGQVI 401
ELP+ A RDL +A I LKYTQSNSV YAK+GQ I
Sbjct: 181 GITFEQGRNELKIDEDLLKNIVTENKELPDEAKRDLIIALITLKYTQSNSVCYAKDGQAI 240
Query: 402 GIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKD 461
GIGAGQQSRIHCTRLAG+K D WY+R HP + + F++G++R ++ NAID Y+
Sbjct: 241 GIGAGQQSRIHCTRLAGNKADIWYLRQHPKVLNLPFKEGIRRPDRDNAIDVYLSDDYMDV 300
Query: 462 MDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSI 496
+ W+ FF PEP+T +EK ++ TL GV++
Sbjct: 301 LADGVWQQFFT-EKPEPLTREEKRAWLATLTGVAL 334
Score = 401 bits (1032), Expect = e-133
Identities = 167/361 (46%), Positives = 214/361 (59%), Gaps = 55/361 (15%)
Query: 497 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 556
K V+D+E +S LA AYARARGADRMSS+GDF ALSD CD TA+++ REVSDGII P
Sbjct: 85 KIYFVDDME--LSPLACAYARARGADRMSSYGDFAALSDVCDVETAKLLKREVSDGIIAP 142
Query: 557 GITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIV 616
G T A EIL+ KK G Y I+++DPNY P+PIE + VFG+T EQ RN + +L
Sbjct: 143 GYTPEALEILKAKKKGNYNIIKIDPNYEPAPIETKDVFGITFEQGRNELKIDEDLL---- 198
Query: 617 SEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPE 676
N V K LP+
Sbjct: 199 -------------------------KNIVTENKE-----------------------LPD 210
Query: 677 FAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPN 736
A RDL +A I LKYTQSNSV YAK+GQ IGIGAGQQSRIHCTRLAG+K D WY+R HP
Sbjct: 211 EAKRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQSRIHCTRLAGNKADIWYLRQHPK 270
Query: 737 ITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 796
+ + F++G++R ++ NAID Y+ + W+ FF PEP+T +EK ++ TL
Sbjct: 271 VLNLPFKEGIRRPDRDNAIDVYLSDDYMDVLADGVWQQFFT-EKPEPLTREEKRAWLATL 329
Query: 797 HGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLFH 856
GV++ SDAFFPF NI+RA SG K+++ PGGS D +VI+ N + +T+ RLFH
Sbjct: 330 TGVALGSDAFFPFGDNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYGMTMAFTGVRLFH 389
Query: 857 H 857
H
Sbjct: 390 H 390
>gnl|CDD|234854 PRK00881, purH, bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 408 bits (1051), Expect = e-133
Identities = 176/472 (37%), Positives = 248/472 (52%), Gaps = 90/472 (19%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
K ++SVSDKTG++ FAK L LG ++++GGTAK L + IPV +V+D+TG PE+L GR
Sbjct: 5 KRALISVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGR 64
Query: 67 VKTLHPAVHAGILS-RNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
VKTLHP +H GIL+ R+ + +++ + + +VV NLYPF +TVAKP + A+EN
Sbjct: 65 VKTLHPKIHGGILARRDNPEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIEN 124
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185
IDIGG T++RAAAKNH+ V V+ DP+DY V+++++A+ T+ E R +LA KAF HT+
Sbjct: 125 IDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELKAN--GSTTLETRFRLAAKAFAHTA 182
Query: 186 DYDTNIVDYFRKQYS---PNEAQIS------LRYGMNPHQSPAQIFTTLDKLP----IKV 232
YD I +Y +Q P +S LRYG NPHQ A + + +
Sbjct: 183 AYDAAIANYLTEQVGEEFPETLNLSFEKKQDLRYGENPHQK-AAFYRDPNAEGGVATAEQ 241
Query: 233 LNG-QPGFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMV 291
L G + + N+ DA +LVKE PA KH +P G AV
Sbjct: 242 LQGKELSYNNIADADAALELVKEFDE----PACVIVKHANPCGVAV-------------G 284
Query: 292 EDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR---EVSDGIICPGI 348
+ + + AY +A D +S+FG IA + E D TAE I + EV II P
Sbjct: 285 DTILE-------AYDKAYACDPVSAFGGIIAFNREVDAETAEAIHKIFLEV---IIAPSF 334
Query: 349 TLGAREILEKKKGGKYVILELPE------------------------FAIRDLTVAT--- 381
+ A EIL KKK + +LE P DL V T
Sbjct: 335 SEEALEILAKKKNLR--LLECPFPGGWEGDFKSVSGGLLVQDRDLGMVDPADLKVVTKRQ 392
Query: 382 -------------IALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 420
+K+ +SN++VYAK+GQ +GIGAGQ SR+ R+A +K
Sbjct: 393 PTEQELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK 444
Score = 106 bits (268), Expect = 4e-24
Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 511 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR---EVSDGIICPGITLGAREILE 567
+ AY +A D +S+FG IA + E D TAE I + EV II P + A EIL
Sbjct: 287 ILEAYDKAYACDPVSAFGGIIAFNREVDAETAEAIHKIFLEV---IIAPSFSEEALEILA 343
Query: 568 KKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAI 627
KKK + +LE P + + V G L Q R+ V P +V++ + + +
Sbjct: 344 KKKNLR--LLEC-PFPGGWEGDFKSVSGGLLVQDRDLGMVDPADLK-VVTKRQPTEQ-EL 398
Query: 628 RDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIR 680
+DL A +K+ +SN++VYAK+GQ +GIGAGQ SR+ R+A +K + +
Sbjct: 399 KDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEKAGDAGLD 451
Score = 70.9 bits (175), Expect = 1e-12
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 788 EKA-DFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLT 846
EKA D L G +ASDAFFPFR ++ A +G + PGGS D+ VI AA+ H +
Sbjct: 443 EKAGDAGLDLKGAVLASDAFFPFRDGVEAAAKAGITAIIQPGGSIRDEEVIAAADEHGIA 502
Query: 847 LIHHNTRLFHH 857
++ R F H
Sbjct: 503 MVFTGVRHFRH 513
>gnl|CDD|216715 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalyzing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalyzed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme
catalyzes the formylation of AICAR with
10-formyl-tetrahydrofolate to yield FAICAR and
tetrahydrofolate. This is catalyzed by a pair of
C-terminal deaminase fold domains in the protein, where
the active site is formed by the dimeric interface of
two monomeric units. The last step is catalyzed by the
N-terminal IMP (Inosine monophosphate) cyclohydrolase
domain EC:3.5.4.10 (IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 315
Score = 315 bits (809), Expect = e-101
Identities = 132/340 (38%), Positives = 175/340 (51%), Gaps = 80/340 (23%)
Query: 137 AAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDTNIVDYFR 196
AAKNH+RVT++ DP+DY+ V+ +++ + + R++LALKAF HT+ YD I DYFR
Sbjct: 1 AAKNHKRVTIVVDPADYSAVLAELKKE--GSLTLQTRRRLALKAFEHTAAYDAAIADYFR 58
Query: 197 KQYSPNE----------AQISLRYGMNPHQSPA-QIFTTLDK---LPIKVLNG-QPGFIN 241
KQYSP + SLRYG NPHQ A + T + P + L+G + + N
Sbjct: 59 KQYSPKHPERTFTLPGVRKQSLRYGENPHQQAAFYVDPTQKEGSIAPAEQLHGKEMSYNN 118
Query: 242 LLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSEL 301
LLDA W+LVKE + N PAAA KH +P G AV +
Sbjct: 119 LLDADAAWRLVKEFE---NQPAAAIVKHANPCGVAV--------------------GPSI 155
Query: 302 AVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKG 361
A AYARAR AD MS+FG IAL+DE D TA+ I E S+ II PG A E+L +KK
Sbjct: 156 AEAYARAREADPMSAFGGIIALNDEVDVETAKEISEEFSEVIIAPGYEPEALEVLSRKKN 215
Query: 362 GKYVILELP----------------------------------------EFAIRDLTVAT 381
+ ++L+ E + DL A
Sbjct: 216 LRVLVLQEDPAYVPELELRQVSGGLLIQDRDDGGVDDSEFSVVTKRKPTEQELEDLLFAW 275
Query: 382 IALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 421
+K+ +SN++VYAKNG +GIGAGQQSR+H RLAGDK
Sbjct: 276 KVVKHVKSNAIVYAKNGMTVGIGAGQQSRVHSARLAGDKA 315
Score = 204 bits (521), Expect = 3e-59
Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 509 SELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEK 568
+A AYARAR AD MS+FG IAL+DE D TA+ I E S+ II PG A E+L +
Sbjct: 153 PSIAEAYARAREADPMSAFGGIIALNDEVDVETAKEISEEFSEVIIAPGYEPEALEVLSR 212
Query: 569 KKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIR 628
KK + ++L+ DP Y P +E RQV G L Q R++ V F ++V++ K + +
Sbjct: 213 KKNLRVLVLQEDPAYVPE-LELRQVSGGLLIQDRDDGGVDDSEF-SVVTKRKPTEQ-ELE 269
Query: 629 DLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 673
DL A +K+ +SN++VYAKNG +GIGAGQQSR+H RLAGDK
Sbjct: 270 DLLFAWKVVKHVKSNAIVYAKNGMTVGIGAGQQSRVHSARLAGDK 314
>gnl|CDD|214822 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase (AICARFT), this enzyme catalyses the
formylation of AICAR with 10-formyl-tetrahydrofolate to
yield FAICAR and tetrahydrofolate. The last step is
catalysed by IMP (Inosine monophosphate) cyclohydrolase
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 311
Score = 308 bits (792), Expect = 2e-98
Identities = 118/339 (34%), Positives = 157/339 (46%), Gaps = 84/339 (24%)
Query: 137 AAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDTNIVDYFR 196
AAKNH+ VTV+ DP+DYA+V+++++A+ S E RK+LA KAF HT+ YD I +Y
Sbjct: 1 AAKNHKDVTVVVDPADYAEVLEELKAN--GGLSLETRKRLAAKAFAHTAAYDAAISNYLA 58
Query: 197 KQY---SPNEAQIS------LRYGMNPHQSPAQIFTTLDKL----PIKVLNGQP-GFINL 242
KQ P +S LRYG NPHQ A +T D L K L G+ + N+
Sbjct: 59 KQLASEFPETLTLSFEKKQDLRYGENPHQK-AAFYTDPDALGGIATAKQLQGKELSYNNI 117
Query: 243 LDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELA 302
LDA +LVKE PA KH +P G AV G LA
Sbjct: 118 LDADAALELVKEFDE----PACVIVKHANPCGVAV-------------------G-DTLA 153
Query: 303 VAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGG 362
AY +A AD +S+FG IA + D TAE I + + II P A EIL KKK
Sbjct: 154 EAYRKAYAADPVSAFGGIIAFNRPVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNL 213
Query: 363 KYVILELPEFA-----------------------------------------IRDLTVAT 381
+ +LE + DL A
Sbjct: 214 R--LLECGPLPDPDGLEFKSVSGGLLVQDRDNGGIDPEDLKVVTKRQPTEEELADLLFAW 271
Query: 382 IALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 420
+K+ +SN++VYAK+GQ +GIGAGQ SR+ R+A +K
Sbjct: 272 KVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEK 310
Score = 203 bits (518), Expect = 6e-59
Identities = 65/165 (39%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 509 SELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEK 568
LA AY +A AD +S+FG IA + D TAE I + + II P A EIL K
Sbjct: 150 DTLAEAYRKAYAADPVSAFGGIIAFNRPVDEETAEAINKIFLEVIIAPDFDEEALEILSK 209
Query: 569 KKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIR 628
KK + +LE P P +E + V G L Q R+N + PE +V++ + E +
Sbjct: 210 KKNLR--LLECGPLPDPDGLEFKSVSGGLLVQDRDNGGIDPEDLK-VVTKRQ-PTEEELA 265
Query: 629 DLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 673
DL A +K+ +SN++VYAK+GQ +GIGAGQ SR+ R+A +K
Sbjct: 266 DLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEK 310
>gnl|CDD|238709 cd01421, IMPCH, Inosine monophosphate cyclohydrolase domain. This
is the N-terminal domain in the purine biosynthesis
pathway protein ATIC (purH). The bifunctional ATIC
protein contains a C-terminal ATIC formylase domain
that formylates
5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH
domain then converts the
formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to
inosine monophosphate. This is the final step in de novo
purine production.
Length = 187
Score = 301 bits (772), Expect = 3e-97
Identities = 100/189 (52%), Positives = 143/189 (75%), Gaps = 2/189 (1%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
K ++SVSDKTGL+ FAK+L LG ++++GGTAK L++ IPV DV+DITG PE+LGGR
Sbjct: 1 KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGR 60
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHP +H GIL+R + + D+++ + + +VV NLYPF +TVAK + + A+ENI
Sbjct: 61 VKTLHPKIHGGILARRDNEEHKDLEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENI 120
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGG +LLRAAAKN++ VTV+ DP+DY KV+++++++ SEE R++LALKAF HT++
Sbjct: 121 DIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKSN--GSISEETRRRLALKAFAHTAE 178
Query: 187 YDTNIVDYF 195
YD I +Y
Sbjct: 179 YDAAISNYL 187
>gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase.
Length = 547
Score = 249 bits (638), Expect = 4e-73
Identities = 159/488 (32%), Positives = 229/488 (46%), Gaps = 105/488 (21%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
K ++S+SDKT L A L LGYT+V++GGTA AL + V V ++T PEML GR
Sbjct: 23 KQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGR 82
Query: 67 VKTLHPAVHAGILS-RNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
VKTLHPAVH GIL+ R+ + + + + +VV NLYPF TV + VEN
Sbjct: 83 VKTLHPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVEN 142
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185
IDIGG ++RAAAKNH+ V V+ DP+DY +++ ++ + ++ R+KLA KAF H +
Sbjct: 143 IDIGGPAMIRAAAKNHKDVLVVVDPADYPALLEYLKGKQ--DDQQDFRRKLAWKAFQHVA 200
Query: 186 DYDTNIVDYFRKQYS-----------PNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLN 234
YD+ + ++ KQ + P + SLRYG NPHQ A + DK + +N
Sbjct: 201 SYDSAVSEWLWKQINGGGKFPPSLTVPLTLKSSLRYGENPHQ-KAAFYV--DK-SLSEVN 256
Query: 235 G------------QPGFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLT 282
+ + N LDA W V E P KH +P G A +
Sbjct: 257 AGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFSN----PTCVVVKHTNPCGVA-----S 307
Query: 283 DPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIG--REVS 340
+I LE AY A AD +S+FG +A + E D A I R +
Sbjct: 308 RGDI-------LE--------AYRLAVRADPVSAFGGIVAFNCEVDEDLAREIREFRSPT 352
Query: 341 DG--------IICPGITLGAREILEKKKGGKYVILE------------------------ 368
DG ++ P T E+L K K ILE
Sbjct: 353 DGETRMFYEIVVAPKYTEKGLEVL-KGKSKTLRILEAKPRKKGRLSLRQVGGGWLAQDSD 411
Query: 369 --LPE---FA-----------IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIH 412
PE F + D A + +K+ +SN++V AKN +++G+G+GQ +R+
Sbjct: 412 DLTPEDITFTVVSEKVPTESELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVE 471
Query: 413 CTRLAGDK 420
R+A +K
Sbjct: 472 SLRIALEK 479
Score = 73.3 bits (180), Expect = 3e-13
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 514 AYARARGADRMSSFGDFIALSDECDTSTAEVIG--REVSDG--------IICPGITLGAR 563
AY A AD +S+FG +A + E D A I R +DG ++ P T
Sbjct: 314 AYRLAVRADPVSAFGGIVAFNCEVDEDLAREIREFRSPTDGETRMFYEIVVAPKYTEKGL 373
Query: 564 EILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLP 623
E+L K K ILE P + RQV G L Q ++ +TPE T V EK
Sbjct: 374 EVL-KGKSKTLRILEAKPR-KKGRLSLRQVGGGWLAQDSDD--LTPEDITFTVVSEKVPT 429
Query: 624 EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 673
E + D A + +K+ +SN++V AKN +++G+G+GQ +R+ R+A +K
Sbjct: 430 ESELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVESLRIALEK 479
Score = 52.5 bits (126), Expect = 6e-07
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 798 GVSVASDAFFPFRAN--IDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855
G ++ASDAFFPF N ++ A +G K ++ PGGS DQ ID N + + L+ R F
Sbjct: 486 GAALASDAFFPFAWNDAVEEACQAGVKVIAEPGGSMRDQDAIDCCNKYGVALLFTGVRHF 545
Query: 856 HH 857
H
Sbjct: 546 RH 547
>gnl|CDD|214855 smart00851, MGS, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase and the domain is
also found in Carbamoyl phosphate synthetase (CPS) where
it forms a regulatory domain that binds to the
allosteric effector ornithine. This family also includes
inosicase. The known structures in this family show a
common phosphate binding site.
Length = 91
Score = 95.6 bits (239), Expect = 9e-24
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 24/115 (20%)
Query: 18 GLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAG 77
GL+ FAK+L+ LG+ L+A+GGTAK LR+ +PV VKTLHP VH G
Sbjct: 1 GLVEFAKRLAELGFELLATGGTAKFLREAGLPV----------------VKTLHPKVHGG 44
Query: 78 ILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVT 132
I + + + +V+ LYPF + +I A ENIDI G T
Sbjct: 45 IP--------QILDLIKNGEIDLVINTLYPFEAQAHEDGYSIRRAAENIDIPGPT 91
>gnl|CDD|216899 pfam02142, MGS, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase and the domain is
also found in Carbamoyl phosphate synthetase (CPS) where
it forms a regulatory domain that binds to the
allosteric effector ornithine. This family also includes
inosicase. The known structures in this family show a
common phosphate binding site.
Length = 92
Score = 86.4 bits (215), Expect = 2e-20
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 18 GLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKTLHPAVHAG 77
GL+ AK L LG+ L A+GGTAK L++ IP +V + TG GGRV
Sbjct: 1 GLVELAKALVELGFKLYATGGTAKFLKEAGIPT-EVVNKTGEG-RPGGRV---------- 48
Query: 78 ILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVT 132
+ + +V+ LYPF TV I A ENIDI T
Sbjct: 49 ----------QIGDLIKNGEIDLVINTLYPFKATVH-DGYAIRRAAENIDIPLPT 92
>gnl|CDD|238297 cd00532, MGS-like, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase, which catalyzes the
enolization of dihydroxyacetone phosphate (DHAP) to
produce methylglyoxal. The family also includes the
C-terminal domain in carbamoyl phosphate synthetase
(CPS) where it catalyzes the last phosphorylation of a
coaboxyphosphate intermediate to form the product
carbamoyl phosphate and may also play a regulatory role.
This family also includes inosine monophosphate
cyclohydrolase. The known structures in this family show
a common phosphate binding site.
Length = 112
Score = 70.2 bits (172), Expect = 2e-14
Identities = 37/148 (25%), Positives = 48/148 (32%), Gaps = 41/148 (27%)
Query: 8 LVILSVSD--KTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGG 65
V LSVSD K L+ A +LS G+ L A+GGT++ L D IPVR V+
Sbjct: 1 GVFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHED------ 54
Query: 66 RVKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
P V A I +V+ P
Sbjct: 55 ----GEPTVDAAIA--------------EKGKFDVVINLRDPRRD-------------RC 83
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDY 153
D G LLR A + V +
Sbjct: 84 TDEDGTALLRLARLYK--IPVTTPNATA 109
>gnl|CDD|238712 cd01424, MGS_CPS_II, Methylglyoxal synthase-like domain from type
II glutamine-dependent carbamoyl phosphate synthetase
(CSP). CSP, a CarA and CarB heterodimer, catalyzes the
production of carbamoyl phosphate which is subsequently
employed in the metabolic pathways responsible for the
synthesis of pyrimidine nucleotides or arginine. The
MGS-like domain is the C-terminal domain of CarB and
appears to play a regulatory role in CPS function by
binding allosteric effector molecules, including UMP
and ornithine.
Length = 110
Score = 53.6 bits (130), Expect = 8e-09
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 9 VILSV--SDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADI 56
V +SV DK + AK+L+ LG+ LVA+ GTAK L++ IPV V +
Sbjct: 3 VFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKV 52
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 50.9 bits (123), Expect = 3e-06
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 9 VILSV--SDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADI 56
V LSV DK ++ AK+L LG+ ++A+ GTAK LR+ IPV V +
Sbjct: 940 VFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELVNKV 989
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 48.6 bits (116), Expect = 1e-05
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 9 VILSVSDKT--GLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
V +S++D T L+P A+ LG+ +V++ GTA L IPV R
Sbjct: 975 VFISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVE--------------R 1020
Query: 67 VKTLHPA-VHAGILSRNTD 84
V LH HAG + N
Sbjct: 1021 VLKLHEGRPHAGDMLANGQ 1039
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 44.2 bits (105), Expect = 3e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 1 MEKNNGKLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADIT-GA 59
+ K L+ + DK LL A++L+ GY L A+ GTAK L + I V ++ G
Sbjct: 934 IPKKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSEGR 993
Query: 60 PEML 63
P +L
Sbjct: 994 PNIL 997
>gnl|CDD|238711 cd01423, MGS_CPS_I_III, Methylglyoxal synthase-like domain found
in pyr1 and URA1-like carbamoyl phosphate synthetases
(CPS), including ammonia-dependent CPS Type I, and
glutamine-dependent CPS Type III. These are multidomain
proteins, in which MGS is the C-terminal domain.
Length = 116
Score = 36.5 bits (85), Expect = 0.009
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 19 LLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVA 54
LLP A++LS LGY L A+ GTA L + IPV VA
Sbjct: 15 LLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVA 50
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed.
Length = 1068
Score = 36.9 bits (86), Expect = 0.051
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1 MEKNNGKLVILSVSD--KTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITG 58
+ + + +SV D K + A++ + LG+ L+A+ GTA L +E I V +
Sbjct: 932 LHIPSYGTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQE 991
Query: 59 APEMLGGRVKTLHPAVHAGILSRNTDSDQSDMKKM 93
L R+K + + + +DS D K+
Sbjct: 992 GSPSLLERIK--QHRIVLVVNTSLSDSASEDAIKI 1024
>gnl|CDD|184501 PRK14093, PRK14093,
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase;
Provisional.
Length = 479
Score = 33.6 bits (77), Expect = 0.50
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 493 GVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDF---------IALSDECDTSTAE 543
G+ A V + ++ + A ARA G R+ SFG +AL +C A+
Sbjct: 216 GLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHAD 275
Query: 544 VIGREVSDGIICPG 557
++G +V+ + PG
Sbjct: 276 ILGHDVTYKLGMPG 289
Score = 32.8 bits (75), Expect = 0.75
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 23/93 (24%)
Query: 264 AASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDF--- 320
A F P GAAV R ++ + A ARA G R+ SFG
Sbjct: 211 AEIFTGLEPGGAAVLNR--------------DNPQFDRLAASARAAGIARIVSFGADEKA 256
Query: 321 ------IALSDECDTSTAEVIGREVSDGIICPG 347
+AL +C A+++G +V+ + PG
Sbjct: 257 DARLLDVALHADCSAVHADILGHDVTYKLGMPG 289
>gnl|CDD|224293 COG1374, NIP7, Protein involved in ribosomal biogenesis, contains
PUA domain [Translation, ribosomal structure and
biogenesis].
Length = 176
Score = 30.8 bits (70), Expect = 1.6
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 334 VIGREVSDGIICPGITLGAREILEKKKGGKYVILE-----LPEFAIRDLTVATIALKYTQ 388
G+ V G+ + E+ YV L ++D I
Sbjct: 74 FFGKRVKGGLFRKHVE-SLEELARIAIIKNYVKERGEMLFLYGNDLKDHVKEIIDEIPEN 132
Query: 389 SNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDN--WYMRH 428
V+ N +GIG G S RL + + + Y+R
Sbjct: 133 GGVFVFNMNDVPLGIGVGALSPSEDGRLIKNALKDVGEYLRR 174
Score = 30.8 bits (70), Expect = 2.0
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 679 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDN--WYMRH 733
++D I V+ N +GIG G S RL + + + Y+R
Sbjct: 118 LKDHVKEIIDEIPENGGVFVFNMNDVPLGIGVGALSPSEDGRLIKNALKDVGEYLRR 174
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 30.7 bits (70), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 299 SELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 346
SE+ ++ R RG R GDF+A+ + T EV+ + + P
Sbjct: 31 SEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKP 78
Score = 30.7 bits (70), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 509 SELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICP 556
SE+ ++ R RG R GDF+A+ + T EV+ + + P
Sbjct: 31 SEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKP 78
>gnl|CDD|224480 COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].
Length = 212
Score = 29.5 bits (67), Expect = 5.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 480 TEKEKADFIYTLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDF 530
+E+ A Y V+IK +D D ELA+ A RGAD + G
Sbjct: 55 SEELLAY--YKEKTVTIKFPAEKDSTDL--ELALDEALERGADEIVILGAL 101
>gnl|CDD|152265 pfam11829, DUF3349, Protein of unknown function (DUF3349). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 99 to 124 amino acids in
length.
Length = 97
Score = 28.0 bits (63), Expect = 6.1
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 279 RRLTDPEIKAAMVEDLEDGMS-----ELAVAYARARGADRMSSFGD 319
RRLTD E+ E G ++ V D + S D
Sbjct: 34 RRLTDDEVAEVAAELTRRGEPAIDDDDIGVLITAV--TDELPSPED 77
>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13
(mammalian uncoordinated)-like proteins. C2-like
domains are thought to be involved in phospholipid
binding in a Ca2+ independent manner in both Unc13 and
Munc13. Caenorabditis elegans Unc13 has a central domain
with sequence similarity to PKC, which includes C1 and
C2-related domains. Unc13 binds phorbol esters and DAG
with high affinity in a phospholipid manner. Mutations
in Unc13 results in abnormal neuronal connections and
impairment in cholinergic neurotransmission in the
nematode. Munc13 is the mammalian homolog which are
expressed in the brain. There are 3 isoforms (Munc13-1,
-2, -3) and are thought to play a role in
neurotransmitter release and are hypothesized to be
high-affinity receptors for phorbol esters. Unc13 and
Munc13 contain both C1 and C2 domains. There are two C2
related domains present, one central and one at the
carboxyl end. Munc13-1 contains a third C2-like domain.
Munc13 interacts with syntaxin, synaptobrevin, and
synaptotagmin suggesting a role for these as scaffolding
proteins. C2 domains fold into an 8-standed
beta-sandwich that can adopt 2 structural arrangements:
Type I and Type II, distinguished by a circular
permutation involving their N- and C-terminal beta
strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the third C2
repeat, C2C, and has a type-II topology.
Length = 133
Score = 28.7 bits (65), Expect = 6.2
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 560 LGAREILEKKKGGK---YVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIV 616
L AR +L G +V +E+ P + + + T +K+ F + E F V
Sbjct: 23 LNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPK----TQVKKKTLFPLFDESFEFNV 78
Query: 617 SEEKWLPEFAIRDLTV 632
E+ E A+ TV
Sbjct: 79 PPEQCSVEGALLLFTV 94
>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit. GMP-PDE delta
subunit was originally identified as a fourth subunit of
rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35).
The precise function of PDE delta subunit in the rod
specific GMP-PDE complex is unclear. In addition, PDE
delta subunit is not confined to photoreceptor cells but
is widely distributed in different tissues. PDE delta
subunit is thought to be a specific soluble transport
factor for certain prenylated proteins and Arl2-GTP a
regulator of PDE-mediated transport.
Length = 156
Score = 28.8 bits (65), Expect = 8.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 769 TKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFF 807
T TWE ++ PP M E SD+F+
Sbjct: 106 TNTWEHIYEFPPLSQMLPAE-----MLSGPYETRSDSFY 139
>gnl|CDD|223237 COG0159, TrpA, Tryptophan synthase alpha chain [Amino acid
transport and metabolism].
Length = 265
Score = 29.1 bits (66), Expect = 9.8
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 24/121 (19%)
Query: 205 QISLRYGMNPHQSPAQIF----TTLDKLPIKVLNGQPGFINLLDALNG------------ 248
+ + ++G++P IF TT D+ K+ GFI + + G
Sbjct: 141 KAAEKHGIDP------IFLVAPTTPDERLKKIAEAASGFIYYV-SRMGVTGARNPVSADV 193
Query: 249 WQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEI-KAAMVEDLEDGMSELAVAYAR 307
+LVK ++ ++P F SP AA D I +A+V+ +E+G+ E A+ R
Sbjct: 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEEGLDEEALEELR 253
Query: 308 A 308
A
Sbjct: 254 A 254
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,499,342
Number of extensions: 4521097
Number of successful extensions: 4598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4541
Number of HSP's successfully gapped: 59
Length of query: 857
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 752
Effective length of database: 6,280,432
Effective search space: 4722884864
Effective search space used: 4722884864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)