RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2261
(857 letters)
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 668 bits (1726), Expect = 0.0
Identities = 317/555 (57%), Positives = 386/555 (69%), Gaps = 44/555 (7%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+L +LSVS+K GL+ FA+ L+ LG L+ASGGTA ALRD +PVRDV+D+TG PEMLGGR
Sbjct: 6 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 65
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHPAVHAGIL+RN D +DM K ++ +V +VVCNLYPF +TV+ P +P AVE I
Sbjct: 66 VKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 125
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKNH RVTV+CDP+DY+ V K++ AS K+TS E R+ LALKAFTHT+
Sbjct: 126 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 185
Query: 187 YDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDAL 246
YD I DYFRK+YS +Q+ LRYGMNPHQSPAQ++TT KLP+ V+NG PGFINL DAL
Sbjct: 186 YDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 245
Query: 247 NGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYA 306
N WQLVKELK AL +PAAASFKH SPAGAAV L++ E + MV DL ++ LA AYA
Sbjct: 246 NAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYA 305
Query: 307 RARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI 366
R+RGADRMSSFGDFIALSD CD TA++I REVSDG++ PG A +IL KKK G Y +
Sbjct: 306 RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 365
Query: 367 LE-------------------------------------------LPEFAIRDLTVATIA 383
L+ LPE A+RDL VA+IA
Sbjct: 366 LQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIA 425
Query: 384 LKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKR 443
+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP + S KF+ GVKR
Sbjct: 426 VKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKR 485
Query: 444 AEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSIKAAMVED 503
AE SNAID Y+ GTIG+D D W++ F+ P +TE EK +I L VS+ +
Sbjct: 486 AEVSNAIDQYVTGTIGEDEDLVKWQAMFE-EVPAQLTEAEKKQWIAKLTAVSLSSDAFFP 544
Query: 504 LEDGMSELAVAYARA 518
D + +
Sbjct: 545 FRDNVDRAKRIGVQF 559
Score = 332 bits (852), Expect = e-103
Identities = 186/368 (50%), Positives = 228/368 (61%), Gaps = 53/368 (14%)
Query: 490 TLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREV 549
L + MV DL ++ LA AYAR+RGADRMSSFGDFIALSD CD TA++I REV
Sbjct: 279 PLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREV 338
Query: 550 SDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTP 609
SDG++ PG A +IL KKK G Y +L++DPNY P E R ++GL L QKRNN +
Sbjct: 339 SDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDR 398
Query: 610 ELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRL 669
LF NIV++ K LPE A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQ
Sbjct: 399 SLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQ--------- 449
Query: 670 AGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNW 729
QSRIHCTRLAGDK ++W
Sbjct: 450 -------------------------------------------QSRIHCTRLAGDKANSW 466
Query: 730 YMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEK 789
++RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +TE EK
Sbjct: 467 WLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFE-EVPAQLTEAEK 525
Query: 790 ADFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIH 849
+I L VS++SDAFFPFR N+DRA G +F+ AP GS D+ VI+A N +TLIH
Sbjct: 526 KQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIH 585
Query: 850 HNTRLFHH 857
N RLFHH
Sbjct: 586 TNLRLFHH 593
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 406 bits (1047), Expect = e-133
Identities = 142/478 (29%), Positives = 217/478 (45%), Gaps = 95/478 (19%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+ ++SV DKTGL+ A+ LS G ++++G TAK + D IPV V +TG PE+L GR
Sbjct: 11 RRALISVYDKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLDGR 70
Query: 67 VKTLHPAVHAGILS-RNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVEN 125
VKTLHP VHAG+L+ + ++++ + +VV NLYPFSQTV ++ VE
Sbjct: 71 VKTLHPRVHAGLLADLRKSEHAAALEQLGIEAFELVVVNLYPFSQTVE-SGASVDDCVEQ 129
Query: 126 IDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTS 185
IDIGG ++RAAAKNH V+ DP Y V+ + A + RK+LA AF H +
Sbjct: 130 IDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALRA---GGFTLAERKRLASLAFQHIA 186
Query: 186 DYDTNIVDYFRKQYSPNEAQI--------------SLRYGMNPHQSPAQIFTTLDKLP-- 229
+YD + + ++ +P LRYG NPHQ A ++ P
Sbjct: 187 EYDIAVASWMQQTLAPEHPVAAFPQWFGRSWRRVAMLRYGENPHQQ-AALYGDPTAWPGL 245
Query: 230 --IKVLNGQP-GFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEI 286
+ L+G+ + N DA W+ + + A KH +P G A+
Sbjct: 246 AQAEQLHGKDMSYNNFTDADAAWRAAFDHEQ----TCVAIIKHANPCGIAI--------- 292
Query: 287 KAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR---EVSDGI 343
+A A+ +A D +S++G IA + E AE + EV I
Sbjct: 293 ----------SSVSVADAHRKAHECDPLSAYGGVIAANTEVSVEMAEYVSTIFTEV---I 339
Query: 344 ICPGITLGAREILEKKK---------------------GGKYV----ILELPEFAIRDLT 378
+ PG GA ++L +KK GG + L+ + T
Sbjct: 340 VAPGYAPGALDVLARKKNIRVLVAAEPLAGGSELRPISGGLLIQQSDQLDAHGDNPANWT 399
Query: 379 VAT----------------IALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 420
+AT A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 400 LATGSPADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
Score = 112 bits (282), Expect = 5e-26
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 507 GMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR---EVSDGIICPGITLGAR 563
+A A+ +A D +S++G IA + E AE + EV I+ PG GA
Sbjct: 293 SSVSVADAHRKAHECDPLSAYGGVIAANTEVSVEMAEYVSTIFTEV---IVAPGYAPGAL 349
Query: 564 EILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTN--IVSEEKW 621
++L +KK + +L E R + G L Q+ + + + N + +
Sbjct: 350 DVLARKKNIR--VLVA-AEPLAGGSELRPISGGLLIQQSDQLDAHGDNPANWTLATGSP- 405
Query: 622 LP-EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 673
+ DL A A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 406 -ADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
Score = 69.0 bits (170), Expect = 3e-12
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855
+ G ASDAFFPF ++ +G V PGGS D+ V +AA +TL R F
Sbjct: 462 VRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTLYLTGARHF 521
Query: 856 HH 857
H
Sbjct: 522 AH 523
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 403 bits (1039), Expect = e-132
Identities = 142/470 (30%), Positives = 215/470 (45%), Gaps = 91/470 (19%)
Query: 10 ILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKT 69
+LSVSDK G++ F K+L LG+ ++++GGT K L++ I V +V+D T +PE+ GRVKT
Sbjct: 28 LLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPELFEGRVKT 87
Query: 70 LHPAVHAGILS-RNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDI 128
LHP +H GIL R+ ++ K+ + +V NLYPF +T D + +ENIDI
Sbjct: 88 LHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYPFKKTTIMSD-DFDEIIENIDI 146
Query: 129 GGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYD 188
GG ++R+AAKN++ V V+CDP DY KVI+ ++ + E R L +KA+ HT++YD
Sbjct: 147 GGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKK---GQNDENFRLNLMIKAYEHTANYD 203
Query: 189 TNIVDYFRKQYS---PNEAQIS------LRYGMNPHQSPAQIFTTLDKLPI---KVLNGQ 236
I +Y ++++ I +YG NPHQ A D K L G+
Sbjct: 204 AYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKGA--LYEFDAFFSANFKALKGE 261
Query: 237 PGFINLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLED 296
F NL D L A PA A KH +P G A+ E+L
Sbjct: 262 ASFNNLTDINAALNLASSFDKA---PAIAIVKHGNPCGFAI-------------KENLVQ 305
Query: 297 GMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR---EVSDGIICPGITLGAR 353
+Y A D +S++G +A++ D + A I EV II + A
Sbjct: 306 -------SYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEV---IIAANVDEKAL 355
Query: 354 EILEKKK-------GGKYVILELPEFAIR--------------------DLTVAT----- 381
+ E KK ++I ++ + + + +
Sbjct: 356 AVFEGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREAS 415
Query: 382 -----------IALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 420
+T+SN+VVY KNG ++ IG G SRI + A K
Sbjct: 416 KEELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAK 465
Score = 108 bits (272), Expect = 1e-24
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 511 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR---EVSDGIICPGITLGAREILE 567
L +Y A D +S++G +A++ D + A I EV II + A + E
Sbjct: 303 LVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEV---IIAANVDEKALAVFE 359
Query: 568 KKKGGKYVILEVDPNYTPSPIER---RQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLP- 623
KK K I + + ++ + + G + Q + ++S+ +
Sbjct: 360 GKKRIK--IFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQRE--AS 415
Query: 624 EFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIR 680
+ ++DL +A +T+SN+VVY KNG ++ IG G SRI + A K E +
Sbjct: 416 KEELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLD 472
Score = 71.4 bits (176), Expect = 6e-13
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 788 EKA-DFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLT 846
KA + L G +AS+AFFPFR +ID A G K + PGGS D V+ AA+ + +
Sbjct: 464 AKAKEMGLDLQGCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMA 523
Query: 847 LIHHNTRLFHH 857
L R F H
Sbjct: 524 LYFTGVRHFLH 534
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 368 bits (947), Expect = e-119
Identities = 131/448 (29%), Positives = 186/448 (41%), Gaps = 103/448 (22%)
Query: 10 ILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVKT 69
++S+ +K L ++L G+ + AS GTAK L+ I DV+ ITG +LGG VKT
Sbjct: 17 LVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKT 76
Query: 70 LHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIG 129
LHP + AGIL + D+ V +LYP +IDIG
Sbjct: 77 LHPEIFAGILGP---EPRWDV----------VFVDLYPP---------------PDIDIG 108
Query: 130 GVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDT 189
GV LLRAAAKN ++V D I + EE RK LA F TS YD+
Sbjct: 109 GVALLRAAAKNWKKVKPAFDMETLKLAI--------EIDDEETRKYLAGMTFAFTSVYDS 160
Query: 190 NIVDYFRKQYSPN--EAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQP-GFINLLDAL 246
+ F + S + LRYG NPH+ A ++ + G+ F N+LDA
Sbjct: 161 IRANQFVEGISLAFKREDLQLRYGENPHEK-AFVYGKPAF--EILHEGKTISFNNILDAE 217
Query: 247 NGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYA 306
N W + K L A KH SP GAA+ ED +
Sbjct: 218 NAWFMAKNLPR----MGAVVVKHQSPCGAAI-------------GEDKVE-------IVK 253
Query: 307 RARGADRMSSFGDFIALSDECDTSTAEVIGR--EVSDGIICPGITLGAREILEKKKGGKY 364
+A AD SSFG +A++ E D A+ + + EV I+ P T A E+L KKK
Sbjct: 254 KAIEADDESSFGGILAVNFEMDEEVAKSLKKYLEV---IVAPSFTQEAIEVLSKKKVRLL 310
Query: 365 VILELPEFAIR----------------DLTVAT----------------IALKYTQSNSV 392
+ +A + + + ++ +SN+V
Sbjct: 311 KPGDYASWAGKMAFGSLVLSERKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAV 370
Query: 393 VYAKNGQVIGIGAGQQSRIHCTRLAGDK 420
+ AK+G +GIG+GQ SR +A
Sbjct: 371 LIAKDGVTVGIGSGQPSRKRAAWIATVM 398
Score = 106 bits (267), Expect = 3e-24
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 511 LAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGR--EVSDGIICPGITLGAREILEK 568
+A AD SSFG +A++ E D A+ + + EV I+ P T A E+L K
Sbjct: 248 KVEIVKKAIEADDESSFGGILAVNFEMDEEVAKSLKKYLEV---IVAPSFTQEAIEVLSK 304
Query: 569 KKGGKYV-ILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLP-EFA 626
KK V +L+ + + FG + +R F +V E E
Sbjct: 305 KK----VRLLKPGD---YASWAGKMAFGSLVLSERK---YPEGNFE-LVVGEP--LSEKE 351
Query: 627 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 673
+ DL A ++ +SN+V+ AK+G +GIG+GQ SR +A
Sbjct: 352 LEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVM 398
Score = 71.0 bits (175), Expect = 6e-13
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855
G ASDAFFPF +++ +G K V AP GS D+ VI+ A +T +R+F
Sbjct: 403 AKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVF 462
Query: 856 HH 857
H
Sbjct: 463 RH 464
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 1e-10
Identities = 94/709 (13%), Positives = 179/709 (25%), Gaps = 268/709 (37%)
Query: 84 DSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTLLRAAAKNHER 143
D + + + D++S+ F V DC V++ + ++ E
Sbjct: 8 DFETGEHQYQYKDILSV---FEDAF---VDNFDCK---DVQD-------MPKSILSKEE- 50
Query: 144 VTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDTNIVDYF-----RKQ 198
I I S + L+ F +V F R
Sbjct: 51 -------------IDHIIMSKDAVSG-------TLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 199 YS------------PNEAQISLRYGMNPHQSPAQIFT---------------TLDKL-PI 230
Y P+ + + Q+F L +L P
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 231 K--VLNGQPGFINLLDALNGWQLVKELKTALNLPAAASFK-HCSPAGAAVF----RRLTD 283
K +++G G G KT + L S+K C +F +
Sbjct: 151 KNVLIDGVLGS--------G-------KTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNS 194
Query: 284 PEIKAAMVEDL-----------EDGMSELAVAYARARGADRM----SSFGD-FIALSDEC 327
PE M++ L D S + + + R + + + L +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 328 DTSTAE---------VIGR--EVSDGI------------ICPGITLG-AREILEKKKGGK 363
+ + R +V+D + +T + +L K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 364 YVILELPEFA--IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 421
+LP ++ IA R
Sbjct: 315 --PQDLPREVLTTNPRRLSIIAESI-----------------------RDGLATW----- 344
Query: 422 DNWYMRHHPNITSWKFRKGVKRA----EKSNAIDNYI-LGTIGKDMD--TKT----WESF 470
DNW +H + K ++ + E + + L T W
Sbjct: 345 DNW--KH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-- 397
Query: 471 FDGPPPEPMT-----------EKEKADFIYTLHGVSIK------------AAMVE----- 502
D + M EK+ + ++ + ++ ++V+
Sbjct: 398 -DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 503 ----------DLEDGMSELAVAY--ARARGADRMSSFG------DFIALSDECDTSTAEV 544
D + + +RM+ F F+ ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---------QKI 507
Query: 545 IGREVSDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNN 604
R S G L + L+ K Y I + DP Y R V + +
Sbjct: 508 --RHDSTAWNASGSILNTLQQLKFYK--PY-ICDNDPKYE------RLVNAIL------D 550
Query: 605 FNVTPELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQV 653
F E N++ + + IAL + ++ + QV
Sbjct: 551 FLPKIE--ENLICSK---------YTDLLRIALMA-EDEAIFEEAHKQV 587
Score = 56.4 bits (135), Expect = 4e-08
Identities = 70/572 (12%), Positives = 150/572 (26%), Gaps = 199/572 (34%)
Query: 366 ILE--LPEFAIRDLTVATI------ALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 417
IL F + + + L + + ++ +K+ + RL
Sbjct: 21 ILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV-------SGTL----RLF 68
Query: 418 GDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNY--ILGTI-----GKDMDTKTWES- 469
W + KF + V R NY ++ I M T+ +
Sbjct: 69 ------WTLLSKQEEMVQKFVEEVLR-------INYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 470 ----FFDGPP--------PEPMTEKEKA-------DFIYTLHGVSIKAAMVEDLEDGM-- 508
+ D +P + +A + + G ++ G
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDG------VL-----GSGK 163
Query: 509 SELAVAYARARGADRMSSFGDF-IALSDECDTSTAEVIGREVSDGIICPGITLGAREILE 567
+ +A+ + F F + L C++ + ++ E+L+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSP----------ETVL---------EMLQ 203
Query: 568 KKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPE-FA 626
K ++ ++DPN+T R++ + +L I S + L
Sbjct: 204 K------LLYQIDPNWTS----------------RSDHSSNIKL--RIHSIQAELRRLLK 239
Query: 627 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC-----TRLAG--DKLPEFAI 679
+ + L Q+ A N + C TR D L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN-------------LSCKILLTTRFKQVTDFLSAATT 286
Query: 680 RDLTVATIALKYTQSNSV-VYAKNGQVIGIGAGQQSRIHCTR------LAGDKVDNWYMR 732
+++ ++ T + K + R T + + +R
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAES-----IR 338
Query: 733 HHPNITSWKFRKGVKRAEKSNAIDNYI--------------LGTIGKDMD--TKT----W 772
W K V + + I++ + L T W
Sbjct: 339 DGLAT--WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 773 ESFFDGPPPEPMT-----------EKEKADFIYTLHGVSVASDAFFPFRANIDRAVLSGA 821
D + M EK+ + ++ + + + R+++
Sbjct: 397 F---DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--D 451
Query: 822 KFVSAPGGSNNDQSVIDAANY---HKLTLIHH 850
+ ++D Y H + HH
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH---IGHH 480
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 57.1 bits (139), Expect = 7e-10
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 9 VILSV--SDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVA 54
+++ + S + L A+QL G+ L A+ T+ L N+P VA
Sbjct: 27 ILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVA 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 1e-08
Identities = 56/279 (20%), Positives = 88/279 (31%), Gaps = 88/279 (31%)
Query: 138 AKNHERVTVICDPSDYAKVIKDI-EASPTKET-------SEEIRKKLALKAFTHTSDYDT 189
A NH + Y I DI +P T + IR+ + F D
Sbjct: 1649 ADNHFK-------DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 190 NIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNG----QPGFINLLDA 245
F+ NE S F + +L+ QP A
Sbjct: 1702 KTEKIFK---EINEHSTSY------------TFRS----EKGLLSATQFTQP-------A 1735
Query: 246 LNGWQ--LVKELKTALNLPAAASFK-H--------CSPAGA--------AVFRR-LTDPE 285
L + ++LK+ +PA A+F H S A VF R +T
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT--- 1792
Query: 286 IKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDT---STAEVIGREV--- 339
++ A+ D E G S + A R+++ AL + T ++ E+
Sbjct: 1793 MQVAVPRD-ELGRSNYGMI---AINPGRVAASFSQEALQYVVERVGKRTGWLV--EIVNY 1846
Query: 340 -SDG--IICPGITLGA----REILEKKKGGKYVILELPE 371
+ + G L A +L K K I+EL +
Sbjct: 1847 NVENQQYVAAG-DLRALDTVTNVLNFIKLQKIDIIELQK 1884
Score = 50.8 bits (121), Expect = 2e-06
Identities = 85/578 (14%), Positives = 154/578 (26%), Gaps = 241/578 (41%)
Query: 74 VHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENIDIGGVTL 133
+HA ++D + +K ++ N +P + L
Sbjct: 101 IHALAAKLLQENDTTLVKTKE------LIKNYITARIMAKRPFDKKSNS---------AL 145
Query: 134 LRAAAKNHERVTVIC----DPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSDYDT 189
RA + + ++ I + DY EE+R + + Y
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYF---------------EELRD-------LYQT-YHV 182
Query: 190 NIVDYFRK--------QYSPNEAQISLRYGM-------NPHQSPAQIFTTLDKLPI---- 230
+ D + + +A+ G+ NP +P + + L +PI
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--LLSIPISCPL 240
Query: 231 -------------KVLNGQPGFINLLDALNGW-QLVKELKTALNLPAAA----SFKHCSP 272
K+L PG L L G + L TA+ A SF
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLVTAV-AIAETDSWESFFVSVR 297
Query: 273 A--------GAA---VFRRLTDPEIKAAMVED-LEDG------MSELAVAYARARGADRM 314
G + + P +++ED LE+ M L++ +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLP---PSILEDSLENNEGVPSPM--LSI-----SNLTQ- 346
Query: 315 SSFGDFIALSDECDTSTAEVIGREVSDGIICPGITL--GAREILEKKKGGKYVILELPEF 372
D++ ++ ++ G++V I+L GA+ V+ P
Sbjct: 347 EQVQDYV---NKTNSHLPA--GKQVE-------ISLVNGAK---------NLVVSGPP-- 383
Query: 373 AIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI--------------------H 412
+ L + L+ A +G QSRI H
Sbjct: 384 --QSLYGLNLTLRK------AKAPSGL-------DQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 413 CTRL--AGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDM-----DTK 465
L A D ++ ++++ S+ KD+ DT
Sbjct: 429 SHLLVPASDLINKDLVKNN---VSFN----------------------AKDIQIPVYDTF 463
Query: 466 TWESF--FDGPPPEPMTEK--------EKADFIYTLH-------GVSIKAAMVEDLEDGM 508
G E + + E H G S + +DG
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG- 522
Query: 509 SELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIG 546
G R+ G D + + G
Sbjct: 523 ----------TGV-RVIVAGTL-------DINPDDDYG 542
Score = 45.0 bits (106), Expect = 1e-04
Identities = 100/578 (17%), Positives = 164/578 (28%), Gaps = 221/578 (38%)
Query: 238 GFI-NLLDALNGWQLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEI---KAAMVED 293
G++ +L++ Q + L L F++C + L +I A ++++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLT-----EFENC-------Y--LEGNDIHALAAKLLQE 111
Query: 294 LEDGMS---ELAVAYARARG-ADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGIT 349
+ + EL Y AR A R AL A+++ I G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-------IFGG-- 162
Query: 350 LGAREILEKKKGGKYVILELPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQ-- 407
G + Y E +RDL Y + +V G +I A
Sbjct: 163 QGNTD--------DY----FEE--LRDL--------YQTYHVLV----GDLIKFSAETLS 196
Query: 408 ---QSRIHCTRLAGDKVD--NW-----------YMRHHPNITSWKF-------------- 437
++ + ++ ++ W Y+ P S
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAK 254
Query: 438 RKGVKRAEKSNAIDNYILGTIGKDMD---------TKTWESFFDGPPPEPMTEKEKADFI 488
G E + +Y+ G G T +WESFF KA +
Sbjct: 255 LLGFTPGE----LRSYLKGATGHSQGLVTAVAIAETDSWESFFV--------SVRKAITV 302
Query: 489 YTLHGV---------SIKAAMVED-LEDG------MSELAVAYARARGADRMSSFGDFIA 532
GV S+ +++ED LE+ M L++ + D++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSI-----SNLTQ-EQVQDYVN 354
Query: 533 -----LSDECDTSTAEVIGRE---VSDGIICPGITL-GAREILEKKKGGKYVILEVDPNY 583
L + V G + VS G P +L G L K K
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVS-G---PPQSLYGLNLTLRKAK------------- 397
Query: 584 TPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSN 643
PS L+Q R P F SE K +F+ R L V
Sbjct: 398 APS----------GLDQSR-----IP--F----SERK--LKFSNRFLPV----------- 423
Query: 644 SVVYAKNGQVIGIGAGQQSRIHCTRL--AGDKLPEFAIRDLTVATIALKYTQSNSVVYA- 700
+ + H L A D + + DL ++ VY
Sbjct: 424 ASPF-----------------HSHLLVPASDLINK----DLVKNNVSFNAKDIQIPVYDT 462
Query: 701 KNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNIT 738
+G + + +G S + V W T
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVK-WETTTQFKAT 499
Score = 37.7 bits (87), Expect = 0.018
Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 64/207 (30%)
Query: 11 LSVSD--KTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGRVK 68
LS+S+ + + + + + L A +L N V ++G P+ L G
Sbjct: 339 LSISNLTQEQVQDYVNKTNS---HLPAGKQVEISLV--NGAKNLV--VSGPPQSLYGLNL 391
Query: 69 TLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNI---PTAVEN 125
TL A + DQS + PFS+ K + P
Sbjct: 392 TLR-KAKAP-----SGLDQSRI----------------PFSE--RKLKFSNRFLP----- 422
Query: 126 IDIGGVT------LLRAAA----KNHERVTVICDPSDYAKVIKDIE-ASPTKETSEEIRK 174
V LL A+ K+ + V + D + D S + S I +
Sbjct: 423 -----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 175 KLALKAFTHTSDYD-------TNIVDY 194
++ ++ T+I+D+
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 36.2 bits (83), Expect = 0.062
Identities = 27/176 (15%), Positives = 43/176 (24%), Gaps = 79/176 (44%)
Query: 8 LVILSVS-----DKTGLLPFAKQLSG--LG-YT-LVASGGTAKALRDENIPVRDVADITG 58
L ++ + GL+P +G LG Y L + + + + ++
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV--------MSIESLVEVVF 1787
Query: 59 APEMLGGRVKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCN 118
R T+ AV L R+ NY M
Sbjct: 1788 Y------RGMTMQVAVPRDELGRS-----------NYGM--------------------- 1809
Query: 119 IPTAVENIDIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSE--EI 172
A N RV V++ + K T EI
Sbjct: 1810 ------------------IAINPGRVAASFSQEALQYVVERVG----KRTGWLVEI 1843
Score = 33.9 bits (77), Expect = 0.30
Identities = 76/433 (17%), Positives = 119/433 (27%), Gaps = 195/433 (45%)
Query: 529 DFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPI 588
+ A DE T+ AE++G+ LG YV V+P+
Sbjct: 46 EGFAADDE-PTTPAELVGK-----------FLG------------YVSSLVEPSKVGQ-- 79
Query: 589 ERRQVFGLTLEQKRNNFNVTPELFTN----IVSEEKWLPEFAIRDLTVATIALKYTQSNS 644
QV L L + N + L N + + K L E + + Y +
Sbjct: 80 -FDQVLNLCLTEFENCY-----LEGNDIHALAA--KLLQENDTTLVKTKELIKNYITARI 131
Query: 645 V----------------VYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIA 688
+ V N Q++ I GQ + E +RDL
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-------FEE--LRDL------ 176
Query: 689 LKYTQSNSVVYAKNGQVIGIGAGQ-----QSRIHCTRLAGDKVD--NW-----------Y 730
Y + +V G +I A ++ + ++ ++ W Y
Sbjct: 177 --YQTYHVLV----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 731 MRHHPNITSWKF--------------RKGVKRAEKSNAIDNYILGTIGKDMD-------- 768
+ P S G E + +Y+ G G
Sbjct: 231 LLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGE----LRSYLKGATGHSQGLVTAVAIA 284
Query: 769 -TKTWESFFD------------G------------PP-------------PEPM------ 784
T +WESFF G PP P PM
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 785 TEKEKADFIYTL--HG-----VSVASDAFFPFRANIDRA-VLSG------------AKFV 824
T+++ D++ H V ++ N + V+SG K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS-------LVNGAKNLVVSGPPQSLYGLNLTLRK-A 396
Query: 825 SAPGGSNNDQSVI 837
AP G DQS I
Sbjct: 397 KAPSGL--DQSRI 407
Score = 31.2 bits (70), Expect = 1.8
Identities = 34/277 (12%), Positives = 65/277 (23%), Gaps = 101/277 (36%)
Query: 507 GMS-ELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIIC---PGITL-- 560
GM +L A+ + + D + G + D I+ +T+
Sbjct: 1630 GMGMDLYKTSKAAQ------------DVWNRADNHFKDTYGFSILD-IVINNPVNLTIHF 1676
Query: 561 ---GAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNF-------NVT-- 608
+ I E Y + + + + F + T
Sbjct: 1677 GGEKGKRIRE-----NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 609 --PELFTNIVS--------EEKWLPE---FA------------------IRDLTVATIAL 637
P L + + +P FA I V +
Sbjct: 1732 TQPALTL--MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES-LVEVVFY 1788
Query: 638 --KYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSN 695
Q G+ A R+ + A++ + V + ++
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRV------AASFSQEALQYV-VERVG---KRTG 1838
Query: 696 SVV----Y-AKNGQVIGIGAGQQSRIHCTRLAGDKVD 727
+V Y +N Q + AGD
Sbjct: 1839 WLVEIVNYNVENQQYV--------------AAGDLRA 1861
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 55.2 bits (134), Expect = 9e-08
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 9 VILSV--SDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADIT-GAPEML 63
+LSV DK ++ A +L G+ L A+ GTA L + I R V + G P +
Sbjct: 945 ALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQ 1002
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.003
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 15/43 (34%)
Query: 250 QLVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVE 292
Q +K+L+ +L L A S +PA A IKA +E
Sbjct: 20 QALKKLQASLKLYADDS----APALA----------IKAT-ME 47
Score = 31.1 bits (69), Expect = 0.82
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 661 QSRIHCTRL-AGDKLPEFAIRDLTVATI 687
Q+ + +L A D P AI+ AT+
Sbjct: 26 QASL---KLYADDSAPALAIK----ATM 46
Score = 28.8 bits (63), Expect = 4.5
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 38/62 (61%)
Query: 170 EEIRKKLALKAFTHTSDYDTNIVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLP 229
+ + KKL ++ K Y+ + A PA L
Sbjct: 20 QAL-KKL-----------QASL-----KLYADDSA-------------PA--------LA 41
Query: 230 IK 231
IK
Sbjct: 42 IK 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 1.6
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 326 ECDTSTAEVIGREVSDG-IICP--GITLGAREI 355
EC +++ S+G ++C G+ L + +
Sbjct: 26 ECKVYPPKIV-ERFSEGDVVCALCGLVLSDKLV 57
Score = 30.4 bits (68), Expect = 1.6
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 536 ECDTSTAEVIGREVSDG-IICP--GITLGAREI 565
EC +++ S+G ++C G+ L + +
Sbjct: 26 ECKVYPPKIV-ERFSEGDVVCALCGLVLSDKLV 57
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.6
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 417 AGDKVDNWYMRHHPNITSWKFRKGVKRAEK 446
A ++ W R + K + A+K
Sbjct: 116 AKKDLEEWNQRQSEQVEKNK--INNRIADK 143
Score = 30.5 bits (68), Expect = 1.6
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 722 AGDKVDNWYMRHHPNITSWKFRKGVKRAEK 751
A ++ W R + K + A+K
Sbjct: 116 AKKDLEEWNQRQSEQVEKNK--INNRIADK 143
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 29.1 bits (65), Expect = 8.0
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 810 RANIDRAVLSGAKFVSAPGGSNNDQSVIDAAN 841
ID + + + +++S++ N
Sbjct: 169 GCYIDLSDIQENILSVLDNYTKSNKSILLTMN 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,765,358
Number of extensions: 903498
Number of successful extensions: 2551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 45
Length of query: 857
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 755
Effective length of database: 3,853,851
Effective search space: 2909657505
Effective search space used: 2909657505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)