RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2261
(857 letters)
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 240 bits (614), Expect = 3e-72
Identities = 189/336 (56%), Positives = 227/336 (67%), Gaps = 44/336 (13%)
Query: 203 EAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDALNGWQLVKELKTALNLP 262
+Q+ LRYGMNPHQSPAQ++TT KLP+ V+NG PGFINL DALN WQLVKELK AL +P
Sbjct: 2 VSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIP 61
Query: 263 AAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIA 322
AAASFKH SPAGAAV L++ E + MV DL ++ LA AYAR+RGADRMSSFGDFIA
Sbjct: 62 AAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIA 121
Query: 323 LSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILEL------------- 369
LSD CD TA++I REVSDG++ PG A +IL KKK G Y +L++
Sbjct: 122 LSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRT 181
Query: 370 ------------------------------PEFAIRDLTVATIALKYTQSNSVVYAKNGQ 399
PE A+RDL VA+IA+KYTQSNSV YAK+GQ
Sbjct: 182 LYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQ 241
Query: 400 VIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIG 459
VIGIGAGQQSRIHCTRLAGDK ++W++RHHP + S KF+ GVKRAE SNAID Y+ GTIG
Sbjct: 242 VIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIG 301
Query: 460 KDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVS 495
+D D W++ F+ P +TE EK +I L VS
Sbjct: 302 EDEDLVKWQAMFEE-VPAQLTEAEKKQWIAKLTAVS 336
Score = 225 bits (574), Expect = 1e-66
Identities = 186/368 (50%), Positives = 228/368 (61%), Gaps = 53/368 (14%)
Query: 490 TLHGVSIKAAMVEDLEDGMSELAVAYARARGADRMSSFGDFIALSDECDTSTAEVIGREV 549
L + MV DL ++ LA AYAR+RGADRMSSFGDFIALSD CD TA++I REV
Sbjct: 79 PLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREV 138
Query: 550 SDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTP 609
SDG++ PG A +IL KKK G Y +L++DPNY P E R ++GL L QKRNN +
Sbjct: 139 SDGVVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDR 198
Query: 610 ELFTNIVSEEKWLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRL 669
LF NIV++ K LPE A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAG
Sbjct: 199 SLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAG---------- 248
Query: 670 AGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNW 729
QQSRIHCTRLAGDK ++W
Sbjct: 249 ------------------------------------------QQSRIHCTRLAGDKANSW 266
Query: 730 YMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEK 789
++RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +TE EK
Sbjct: 267 WLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEE-VPAQLTEAEK 325
Query: 790 ADFIYTLHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIH 849
+I L VS++SDAFFPFR N+DRA G +F+ AP GS D+ VI+A N +TLIH
Sbjct: 326 KQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIH 385
Query: 850 HNTRLFHH 857
N RLFHH
Sbjct: 386 TNLRLFHH 393
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 197
Score = 182 bits (464), Expect = 1e-53
Identities = 126/194 (64%), Positives = 154/194 (79%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
+L +LSVS+K GL+ FA+ L+ LG L+ASGGTA ALRD +PVRDV+D+TG PEMLGGR
Sbjct: 3 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 62
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHPAVHAGIL+RN D +DM K ++ +V +VVCNLYPF +TV+ P +P AVE I
Sbjct: 63 VKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 122
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKNH RVTV+CDP+DY+ V K++ AS K+TS E R+ LALKAFTHT+
Sbjct: 123 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 182
Query: 187 YDTNIVDYFRKQYS 200
YD I DYFRK+YS
Sbjct: 183 YDAAISDYFRKEYS 196
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 157
Score = 129 bits (324), Expect = 3e-35
Identities = 65/191 (34%), Positives = 87/191 (45%), Gaps = 36/191 (18%)
Query: 7 KLVILSVSDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIPVRDVADITGAPEMLGGR 66
K +++S+ +K L ++L G+ + AS GTAK L+ I DV+ ITG +LGG
Sbjct: 2 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGL 61
Query: 67 VKTLHPAVHAGILSRNTDSDQSDMKKMNYDMVSIVVCNLYPFSQTVAKPDCNIPTAVENI 126
VKTLHP + AGIL +V +LYP +I
Sbjct: 62 VKTLHPEIFAGILGPE-------------PRWDVVFVDLYPP---------------PDI 93
Query: 127 DIGGVTLLRAAAKNHERVTVICDPSDYAKVIKDIEASPTKETSEEIRKKLALKAFTHTSD 186
DIGGV LLRAAAKN ++V D I + EE RK LA F TS
Sbjct: 94 DIGGVALLRAAAKNWKKVKPAFDMETLKLAI--------EIDDEETRKYLAGMTFAFTSV 145
Query: 187 YDTNIVDYFRK 197
YD+ + F +
Sbjct: 146 YDSIRANQFVE 156
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 93.7 bits (232), Expect = 2e-21
Identities = 67/272 (24%), Positives = 100/272 (36%), Gaps = 69/272 (25%)
Query: 191 IVDYFRKQYSPNEAQISLRYGMNPHQSPAQIFTTLDKLPIKVLNGQPGFINLLDALNGWQ 250
I F+++ + LRYG NPH+ I F N+LDA N W
Sbjct: 1 ISLAFKRE------DLQLRYGENPHEKAF--VYGKPAFEILHEGKTISFNNILDAENAWF 52
Query: 251 LVKELKTALNLPAAASFKHCSPAGAAVFRRLTDPEIKAAMVEDLEDGMSELAVAYARARG 310
+ K L A KH SP GAA+ + +A
Sbjct: 53 MAKNLPR----MGAVVVKHQSPCGAAI--------------------GEDKVEIVKKAIE 88
Query: 311 ADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKYVILELP 370
AD SSFG +A++ E D A+ + ++ + I+ P T A E+L KKK +
Sbjct: 89 ADDESSFGGILAVNFEMDEEVAKSL-KKYLEVIVAPSFTQEAIEVLSKKKVRLLKPGDYA 147
Query: 371 EFA--------------------------------IRDLTVATIALKYTQSNSVVYAKNG 398
+A + DL A ++ +SN+V+ AK+G
Sbjct: 148 SWAGKMAFGSLVLSERKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDG 207
Query: 399 QVIGIGAGQQSRIHCT----RLAGDKVDNWYM 426
+GIG+GQ SR +AG+K
Sbjct: 208 VTVGIGSGQPSRKRAAWIATVMAGEKAKGAVA 239
Score = 86.3 bits (213), Expect = 5e-19
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 796 LHGVSVASDAFFPFRANIDRAVLSGAKFVSAPGGSNNDQSVIDAANYHKLTLIHHNTRLF 855
G ASDAFFPF +++ +G K V AP GS D+ VI+ A +T +R+F
Sbjct: 234 AKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVF 293
Query: 856 HH 857
H
Sbjct: 294 RH 295
Score = 51.7 bits (123), Expect = 1e-07
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 12/164 (7%)
Query: 515 YARARGADRMSSFGDFIALSDECDTSTAEVIGREVSDGIICPGITLGAREILEKKKGGKY 574
+A AD SSFG +A++ E D A+ + ++ + I+ P T A E+L
Sbjct: 83 VKKAIEADDESSFGGILAVNFEMDEEVAKSL-KKYLEVIVAPSFTQEAIEVL------SK 135
Query: 575 VILEVDPNYTPSPIERRQVFGLTLEQKRNNFNVTPELFTNIVSEEKWLPEFAIRDLTVAT 634
+ + + + FG + +R EL L E + DL A
Sbjct: 136 KKVRLLKPGDYASWAGKMAFGSLVLSERKYPEGNFELVVGE-----PLSEKELEDLEFAY 190
Query: 635 IALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKLPEFA 678
++ +SN+V+ AK+G +GIG+GQ SR +A E A
Sbjct: 191 RVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKA 234
Score = 42.8 bits (100), Expect = 1e-04
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 660 QQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCT 719
+ + + G+ L E + DL A ++ +SN+V+ AK+G +GIG+GQ SR
Sbjct: 164 KYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAA 223
Query: 720 ----RLAGDKVDNWYM 731
+AG+K
Sbjct: 224 WIATVMAGEKAKGAVA 239
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase,
large subunit allosteric, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 138
Score = 43.8 bits (103), Expect = 1e-05
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 9 VILSV--SDKTGLLPFAKQLSGLGYTLVASGGTAKALRDENIP 49
+LSV DK ++ A +L G+ L A+ GTA L + I
Sbjct: 10 ALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGIN 52
>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga
maritima [TaxId: 2336]}
Length = 156
Score = 33.8 bits (77), Expect = 0.040
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 1 MEKNNGKLVILSVSDKTGLLPFAKQLSGL--GYTLVASGGTAKALRDENI 48
M+K +I K LL + G + L A+G T L+++
Sbjct: 8 MDKKKRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLG 57
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 324
Score = 28.5 bits (62), Expect = 3.6
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 545 IGREVSDGIICPGITLGAREILEKKKGGKYVILEVDPNYTPSPIERRQVFGLTLEQKRNN 604
+ E+ + G+ A L G + + FG Q +
Sbjct: 172 VETELFPCLRHFGLRFYAFNPLA----GGLLTGRYKYQDKDGKNPESRFFGNPFSQLYMD 227
Query: 605 FNVTPELFTNIVSEEKWLPEFAIR-DLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSR 663
E F I EK L ++ + A+++ +S + G + +G +
Sbjct: 228 RYWKEEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQ 287
Query: 664 I 664
+
Sbjct: 288 L 288
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 27.2 bits (59), Expect = 8.2
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 655 GIGAGQQSRIHCTRLAGDKLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAG 711
G G Q + E A+R LT + S GQ G+ +G
Sbjct: 104 GRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSG 160
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 26.9 bits (59), Expect = 9.8
Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 17/145 (11%)
Query: 319 DFIALSDECDT---STAEVIGREVSDGIICPGITLGAREILEKKKGGKYVI-----LELP 370
D+ + E + AE + ++ DG P I+ GA + +K K V + P
Sbjct: 12 DYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDP 71
Query: 371 EFAIRDLTVATIALKYTQSNSVV--------YAKNGQVIGIGAGQQSRIHCTRLAGDKVD 422
E + A + + S G G+ + D VD
Sbjct: 72 ERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVD 131
Query: 423 N-WYMRHHPNITSWKFRKGVKRAEK 446
M +P F
Sbjct: 132 QVLIMTVNPGFGGQAFIPECLEKVA 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,255,077
Number of extensions: 158559
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 19
Length of query: 857
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 764
Effective length of database: 1,130,706
Effective search space: 863859384
Effective search space used: 863859384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)