BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2262
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10735|RT12_DROME 40S ribosomal protein S12, mitochondrial OS=Drosophila melanogaster
GN=tko PE=1 SV=1
Length = 140
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 98/109 (89%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEM 83
+L MH GPH K RPPRQPL GKPFAKGVVLK LIKKPKKPNSANRKCVLVRLSTGKEM
Sbjct: 32 SLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEM 91
Query: 84 VAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
VAYIPG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HVVKK+Q
Sbjct: 92 VAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 140
>sp|O35680|RT12_MOUSE 28S ribosomal protein S12, mitochondrial OS=Mus musculus GN=Mrps12
PE=2 SV=1
Length = 139
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 4/131 (3%)
Query: 2 LNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAKGVVLKVLI 59
L + L+ +W TL MH GP +K PP++ P G+P KGVVL+ I
Sbjct: 10 LTTSLSRGLALAPQLWAARSMATLNQMHRLGP--RKEPPKRLGPTEGRPQLKGVVLRTFI 67
Query: 60 KKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 119
+KPKKPNSANRKC VRLSTGKE V +IPGEGH LQEH++VL + GR +DLPGVK+K VR
Sbjct: 68 RKPKKPNSANRKCCRVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVR 127
Query: 120 GVYDLPHVVKK 130
G YD HV KK
Sbjct: 128 GKYDCGHVQKK 138
>sp|Q29RU1|RT12_BOVIN 28S ribosomal protein S12, mitochondrial OS=Bos taurus GN=MRPS12
PE=2 SV=1
Length = 139
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 89/131 (67%), Gaps = 4/131 (3%)
Query: 2 LNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQP--LLGKPFAKGVVLKVLI 59
L++ ++ L+ W TL +H +GP K PP +P G+P KGVVL+ I
Sbjct: 10 LSMSLNYGLALAPRPWGTRPMATLNQLHRRGP--PKFPPSKPGPTEGRPQLKGVVLRTFI 67
Query: 60 KKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 119
+KPKKPNSANRKC VRLSTG+E V +IPGEGHNLQEH++VL + GR +DLPGVK+K VR
Sbjct: 68 RKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLKVVR 127
Query: 120 GVYDLPHVVKK 130
G YD HV KK
Sbjct: 128 GKYDCGHVQKK 138
>sp|O15235|RT12_HUMAN 28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12
PE=1 SV=1
Length = 138
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 84/131 (64%), Gaps = 4/131 (3%)
Query: 2 LNLVIDASLSDILPVWVREKTKTLWDMHMKGPHYKKRPPRQ--PLLGKPFAKGVVLKVLI 59
LN + + + +W TL MH GP KRPPR+ P G+P KGVVL
Sbjct: 10 LNTSLTCGPALVPRLWATCSMATLNQMHRLGP--PKRPPRKLGPTEGRPQLKGVVLCTFT 67
Query: 60 KKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 119
+KPKKPNSANRKC VRLSTG+E V +IPGEGH LQEH IVL + GR +DLPGVK+ VR
Sbjct: 68 RKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVR 127
Query: 120 GVYDLPHVVKK 130
G YD HV KK
Sbjct: 128 GKYDCGHVQKK 138
>sp|Q5RB32|RT12_PONAB 28S ribosomal protein S12, mitochondrial OS=Pongo abelii GN=MRPS12
PE=2 SV=1
Length = 139
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 2 LNLVIDASLSDILPVWVREKTKTLWDMH-MKGPHYKKRPPRQ--PLLGKPFAKGVVLKVL 58
LN + + + +W TL MH + GP KRPP++ P G+P KGVVL
Sbjct: 10 LNTSLTCGPALVPRLWATCSMATLNQMHRLGGP--PKRPPQKLGPTEGRPQLKGVVLCTF 67
Query: 59 IKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCV 118
+KPKKPNSANRKC VRLSTG+E V +IPGEGH LQEH IVL + GR +DLPGVK+ V
Sbjct: 68 TRKPKKPNSANRKCCRVRLSTGQEAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVV 127
Query: 119 RGVYDLPHVVKK 130
RG YD HV KK
Sbjct: 128 RGKYDCGHVQKK 139
>sp|P26871|RT12_MARPO Ribosomal protein S12, mitochondrial OS=Marchantia polymorpha
GN=RPS12 PE=3 SV=2
Length = 126
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K+R R L K P +GV L+V + PKKPNSA RK VRL+ E
Sbjct: 3 TMNQLVRKGRESKRRTKRTRALNKCPQKQGVCLRVSTRSPKKPNSALRKIAKVRLTNRNE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
++AYIPGEGHNLQEH++V+ + GRV+DLPGVK C+RGV DL
Sbjct: 63 IIAYIPGEGHNLQEHSVVMVRGGRVQDLPGVKYHCIRGVKDL 104
>sp|B2GIK9|RS12_KOCRD 30S ribosomal protein S12 OS=Kocuria rhizophila (strain ATCC 9341 /
DSM 348 / NBRC 103217 / DC2201) GN=rpsL PE=3 SV=1
Length = 124
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H K + P L G P +GV +V PKKPNSA RK V+L+ G E
Sbjct: 3 TIQQLVRKGRHSKVVKTKAPALKGNPMKRGVCTRVFTTTPKKPNSALRKVARVKLNGGVE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 63 VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKGRQQ 112
>sp|Q6MER6|RS12_PARUW 30S ribosomal protein S12 OS=Protochlamydia amoebophila (strain
UWE25) GN=rpsL PE=3 SV=1
Length = 126
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 36 KKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNL 94
KKR + P L K P +GV L+V K PKKPNSA RK VRLSTG+E++AYI GEGHNL
Sbjct: 15 KKRRSKSPALQKCPQRRGVCLQVKTKTPKKPNSALRKVAWVRLSTGQEVIAYIGGEGHNL 74
Query: 95 QEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
QEH+IVL + GRVKDLPGV+ VRG D V + Q
Sbjct: 75 QEHSIVLVRGGRVKDLPGVRYHIVRGALDCAAVKDRKQ 112
>sp|Q96033|RT12_HELAN Ribosomal protein S12, mitochondrial OS=Helianthus annuus GN=RPS12
PE=2 SV=1
Length = 125
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
TL + G K+R R L + P +GV L+V + PKKPNSA RK VRLS +
Sbjct: 3 TLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHD 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
+ AYIPGEGHNLQEH+IVL + GRVKDLPGVK C+RGV DL
Sbjct: 63 IFAYIPGEGHNLQEHSIVLIRGGRVKDLPGVKFHCIRGVKDL 104
>sp|Q2S3R9|RS12_SALRD 30S ribosomal protein S12 OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=rpsL PE=3 SV=2
Length = 124
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G P +GV +V PKKPNSA RK VRL+ G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24 LEGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTNGNEVTAYIPGEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGVK VRG D V ++ Q
Sbjct: 84 GGRVKDLPGVKYHIVRGALDTAGVEERRQ 112
>sp|P0A4A5|RS12_STRLI 30S ribosomal protein S12 OS=Streptomyces lividans GN=rpsL PE=1
SV=1
Length = 123
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|B1W419|RS12_STRGG 30S ribosomal protein S12 OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=rpsL PE=3 SV=1
Length = 123
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|P0A4A6|RS12_STRFL 30S ribosomal protein S12 OS=Streptomyces filamentosus GN=rpsL PE=1
SV=1
Length = 123
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|P0A4A3|RS12_STRCO 30S ribosomal protein S12 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=rpsL PE=1 SV=1
Length = 123
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|P0A4A4|RS12_STRAW 30S ribosomal protein S12 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rpsL PE=1 SV=1
Length = 123
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRQDKVEKNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|B1ZNF2|RS12_OPITP 30S ribosomal protein S12 OS=Opitutus terrae (strain DSM 11246 /
PB90-1) GN=rpsL PE=3 SV=1
Length = 126
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 63/87 (72%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G PF +GV ++V+ + PKKPNSA RK VRL+ G E+++YIP EGHNLQEH+IVL +
Sbjct: 24 LDGNPFRRGVCVQVMTRTPKKPNSAIRKVAKVRLTNGNEVISYIPDEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKK 130
GRVKDLPGV+ VRG D V K+
Sbjct: 84 GGRVKDLPGVRYHIVRGTLDATGVEKR 110
>sp|P17293|RS12_THETH 30S ribosomal protein S12 OS=Thermus thermophilus GN=rpsL PE=1 SV=3
Length = 132
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG ++ + P L G PF +GV V PKKPNSA RK VRL++G E
Sbjct: 3 TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V
Sbjct: 63 VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107
>sp|Q5SHN3|RS12_THET8 30S ribosomal protein S12 OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=rpsL PE=1 SV=3
Length = 132
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG ++ + P L G PF +GV V PKKPNSA RK VRL++G E
Sbjct: 3 TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V
Sbjct: 63 VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107
>sp|P61941|RS12_THET2 30S ribosomal protein S12 OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=rpsL PE=1 SV=2
Length = 132
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG ++ + P L G PF +GV V PKKPNSA RK VRL++G E
Sbjct: 3 TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 127
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V
Sbjct: 63 VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107
>sp|C3PKN9|RS12_CORA7 30S ribosomal protein S12 OS=Corynebacterium aurimucosum (strain
ATCC 700975 / DSM 44827 / CN-1) GN=rpsL PE=3 SV=1
Length = 123
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKK-RPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H KK + L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRHSKKAKVATAGLKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VSAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGALDTQGVKDRKQ 112
>sp|A5USJ4|RS12_ROSS1 30S ribosomal protein S12 OS=Roseiflexus sp. (strain RS-1) GN=rpsL
PE=3 SV=1
Length = 144
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 59/87 (67%)
Query: 46 GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVG 105
G PF +GV +V PKKPNSA RK VRLS G E+ AYIPGEGHNLQEH++VL + G
Sbjct: 40 GSPFKRGVCTQVRTMTPKKPNSALRKIARVRLSNGMEVTAYIPGEGHNLQEHSVVLIRGG 99
Query: 106 RVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
RVKDLPGV+ VRG D V + Q
Sbjct: 100 RVKDLPGVRYHIVRGTLDAQGVANRKQ 126
>sp|A7NR68|RS12_ROSCS 30S ribosomal protein S12 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rpsL PE=3 SV=1
Length = 144
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 59/87 (67%)
Query: 46 GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVG 105
G PF +GV +V PKKPNSA RK VRLS G E+ AYIPGEGHNLQEH++VL + G
Sbjct: 40 GSPFKRGVCTQVRTMTPKKPNSALRKIARVRLSNGMEVTAYIPGEGHNLQEHSVVLIRGG 99
Query: 106 RVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
RVKDLPGV+ VRG D V + Q
Sbjct: 100 RVKDLPGVRYHIVRGTLDAQGVANRKQ 126
>sp|B3PMF1|RS12_MYCA5 30S ribosomal protein S12 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rpsL PE=3 SV=1
Length = 138
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 60/85 (70%)
Query: 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRV 107
PF +GV +V PKKPNSA RK VRLS G+E+ AYIPGEGHNLQEH++VL + G+V
Sbjct: 41 PFKRGVCTRVATMTPKKPNSAIRKYARVRLSNGQEVTAYIPGEGHNLQEHSVVLIRGGKV 100
Query: 108 KDLPGVKIKCVRGVYDLPHVVKKTQ 132
KDLPGV+ VRG D V K+ Q
Sbjct: 101 KDLPGVRYTIVRGTQDAAGVDKRKQ 125
>sp|B3E073|RS12_METI4 30S ribosomal protein S12 OS=Methylacidiphilum infernorum (isolate
V4) GN=rpsL PE=3 SV=1
Length = 141
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + +G KR + P L P +GV ++V+ + PKKPNSA RK VRL+ GKE
Sbjct: 3 TINQLVRRGREKLKRKTKAPALDSCPQRRGVCVQVMTRTPKKPNSALRKVAKVRLTNGKE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVV 128
++AYIPGEGHNLQEH+IVL + GRVKDLPGV+ +RG D V
Sbjct: 63 VIAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIIRGTLDASGAV 108
>sp|O14182|RT12_SCHPO Probable 37S ribosomal protein S12, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrps12 PE=3 SV=3
Length = 162
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 59/87 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G PF +GV +V KPKKPNSA RK VRLSTG+ + AYIPG GHN QEH +VL +
Sbjct: 61 LEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRLSTGRSVTAYIPGIGHNAQEHAVVLLR 120
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKK 130
GR +D PGV+ VRGVYD+ V +
Sbjct: 121 GGRAQDCPGVQYHVVRGVYDIAGVAGR 147
>sp|P60098|RT12_WHEAT Ribosomal protein S12, mitochondrial OS=Triticum aestivum GN=RPS12
PE=2 SV=1
Length = 125
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 32 GPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGE 90
G K+R R L + P +GV L+V + PKKPNSA RK VRLS ++ AYIPGE
Sbjct: 11 GREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGE 70
Query: 91 GHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
GHNLQEH+IVL + GRVKDLPGVK C+RGV DL
Sbjct: 71 GHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDL 104
>sp|P60099|RT12_MAIZE Ribosomal protein S12, mitochondrial OS=Zea mays GN=RPS12 PE=2 SV=1
Length = 125
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 32 GPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGE 90
G K+R R L + P +GV L+V + PKKPNSA RK VRLS ++ AYIPGE
Sbjct: 11 GREEKRRTDRTRALDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGE 70
Query: 91 GHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
GHNLQEH+IVL + GRVKDLPGVK C+RGV DL
Sbjct: 71 GHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDL 104
>sp|A1A0S8|RS12_BIFAA 30S ribosomal protein S12 OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rpsL
PE=3 SV=1
Length = 123
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G P +GV +V PKKPNSA RK VRLS+G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24 LKGSPLRRGVCTRVYTTTPKKPNSALRKVARVRLSSGVEVTAYIPGEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGV+ VRG D V + Q
Sbjct: 84 GGRVKDLPGVRYHIVRGALDTQGVKDRKQ 112
>sp|Q01607|RT12_OENEH 40S ribosomal protein S12, mitochondrial OS=Oenothera elata subsp.
hookeri GN=RPS12 PE=2 SV=1
Length = 188
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + G K R R+ LGK P +GV L+V + PKKPNSA K VRLS +
Sbjct: 66 TMNQLIRHGREEKHRSDRKRALGKCPQKQGVCLRVSTRTPKKPNSALGKIAKVRLSNRND 125
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
+ AYIPGEGHNLQEH++VL + GRVKDLPGVK C+RGV DL
Sbjct: 126 VFAYIPGEGHNLQEHSMVLVRGGRVKDLPGVKFHCIRGVKDL 167
>sp|P59162|RS12_BIFLO 30S ribosomal protein S12 OS=Bifidobacterium longum (strain NCC
2705) GN=rpsL PE=3 SV=1
Length = 123
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G P +GV +V PKKPNSA RK VRLS+G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24 LKGSPLRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGV+ VRG D V + Q
Sbjct: 84 GGRVKDLPGVRYHIVRGALDTQGVKDRKQ 112
>sp|Q8NT21|RS12_CORGL 30S ribosomal protein S12 OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=rpsL PE=3 SV=1
Length = 122
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKK-RPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H K + L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRHDKSAKVATAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 63 VSAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGALDTQGVKDRKQ 112
>sp|A4QBG7|RS12_CORGB 30S ribosomal protein S12 OS=Corynebacterium glutamicum (strain R)
GN=rpsL PE=3 SV=1
Length = 122
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKK-RPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H K + L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRHDKSAKVATAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 63 VSAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGALDTQGVKDRKQ 112
>sp|A5IZ35|RS12_MYCAP 30S ribosomal protein S12 OS=Mycoplasma agalactiae (strain PG2)
GN=rpsL PE=3 SV=1
Length = 137
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 59/85 (69%)
Query: 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRV 107
PF +GV +V PKKPNSA+RK V+LS G E+ AYI GEGHNLQEH++VL + GRV
Sbjct: 41 PFKRGVCTRVATMTPKKPNSASRKYARVKLSNGMEITAYIGGEGHNLQEHSVVLIRGGRV 100
Query: 108 KDLPGVKIKCVRGVYDLPHVVKKTQ 132
KDLPGV+ VRG DL V + Q
Sbjct: 101 KDLPGVRYHIVRGTQDLAGVANRKQ 125
>sp|B8DTV4|RS12_BIFA0 30S ribosomal protein S12 OS=Bifidobacterium animalis subsp. lactis
(strain AD011) GN=rpsL PE=3 SV=1
Length = 123
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G P +GV +V PKKPNSA RK VRLS+G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24 LKGSPLRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGV+ VRG D V + Q
Sbjct: 84 GGRVKDLPGVRYHIVRGALDTQGVKDRKQ 112
>sp|C5CC69|RS12_MICLC 30S ribosomal protein S12 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rpsL PE=3 SV=1
Length = 124
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G P +GV +V PKKPNSA RK VRL+ G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24 LQGNPMRRGVCTRVYTTTPKKPNSALRKVARVRLNGGIEVTAYIPGEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGV+ K VRG D V + Q
Sbjct: 84 GGRVKDLPGVRYKIVRGALDTQGVKNRGQ 112
>sp|B7GU49|RS12_BIFLS 30S ribosomal protein S12 OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=rpsL PE=3 SV=1
Length = 123
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L G P +GV +V P+KPNSA RK VRLS+G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 24 LKGSPLRRGVCTRVYTTTPRKPNSALRKVARVRLSSGIEVTAYIPGEGHNLQEHSIVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGV+ VRG D V + Q
Sbjct: 84 GGRVKDLPGVRYHIVRGALDTQGVKDRKQ 112
>sp|Q6NJD8|RS12_CORDI 30S ribosomal protein S12 OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=rpsL PE=3
SV=1
Length = 123
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYK-KRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H K + L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRHDKTAKVATAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VSAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGALDTQGVKDRKQ 112
>sp|P59163|RS12_COREF 30S ribosomal protein S12 OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=rpsL PE=3 SV=1
Length = 122
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYK-KRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H K + L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRHDKTAKVATAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VSAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGALDTQGVKDRKQ 112
>sp|A0LRL5|RS12_ACIC1 30S ribosomal protein S12 OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=rpsL PE=3 SV=1
Length = 124
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRQAKASKTKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGVE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPG GHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGVGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVRNRKQ 112
>sp|P92532|RT12_ARATH Ribosomal protein S12, mitochondrial OS=Arabidopsis thaliana
GN=RPS12 PE=2 SV=2
Length = 125
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLLGK-PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T + G K+R R L K P GV L+V + PKKPNSA RK VRLS +
Sbjct: 3 TFNQLIRHGREEKRRTDRTRALDKCPQKTGVCLRVSTRTPKKPNSALRKIAKVRLSNRHD 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 124
+ AYIPGEGHNLQEH+ VL + GRVKDLPGVK C+RGV DL
Sbjct: 63 IFAYIPGEGHNLQEHSTVLIRGGRVKDLPGVKFHCIRGVKDL 104
>sp|A0M5A2|RS12_GRAFK 30S ribosomal protein S12 OS=Gramella forsetii (strain KT0803)
GN=rpsL PE=3 SV=1
Length = 124
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 59/85 (69%)
Query: 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRV 107
P +GV +V PKKPNSA RK VRL+ GKE+ AYIPGEGHNLQEH+IVL + GRV
Sbjct: 28 PQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGKEVNAYIPGEGHNLQEHSIVLVRGGRV 87
Query: 108 KDLPGVKIKCVRGVYDLPHVVKKTQ 132
KDLPGV+ VRG D V +TQ
Sbjct: 88 KDLPGVRYHIVRGALDTAGVEGRTQ 112
>sp|B4U739|RS12_HYDS0 30S ribosomal protein S12 OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=rpsL PE=3 SV=1
Length = 135
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 63/97 (64%)
Query: 36 KKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQ 95
KK+ L G P +GV ++V PKKPNSA RK VRLS G E+ YIPGEGHNLQ
Sbjct: 16 KKKSKAPALQGNPQKRGVCVRVYTVTPKKPNSALRKVARVRLSNGIEVTCYIPGEGHNLQ 75
Query: 96 EHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
EH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 76 EHSIVLVRGGRVKDLPGVRYKIIRGALDTAGVANRRQ 112
>sp|A5FMY5|RS12_FLAJ1 30S ribosomal protein S12 OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=rpsL PE=3 SV=1
Length = 127
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 58/85 (68%)
Query: 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRV 107
P +GV +V PKKPNSA RK VRL+ G E+ AYIPGEGHNLQEH+IVL + GRV
Sbjct: 28 PQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRV 87
Query: 108 KDLPGVKIKCVRGVYDLPHVVKKTQ 132
KDLPGV+ VRG D V +TQ
Sbjct: 88 KDLPGVRYHIVRGALDTSGVAGRTQ 112
>sp|A6GZA3|RS12_FLAPJ 30S ribosomal protein S12 OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=rpsL PE=3 SV=1
Length = 127
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 58/85 (68%)
Query: 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRV 107
P +GV +V PKKPNSA RK VRL+ G E+ AYIPGEGHNLQEH+IVL + GRV
Sbjct: 28 PQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRV 87
Query: 108 KDLPGVKIKCVRGVYDLPHVVKKTQ 132
KDLPGV+ VRG D V +TQ
Sbjct: 88 KDLPGVRYHIVRGALDTSGVAGRTQ 112
>sp|Q4AAQ4|RS12_MYCHJ 30S ribosomal protein S12 OS=Mycoplasma hyopneumoniae (strain J /
ATCC 25934 / NCTC 10110) GN=rpsL PE=3 SV=1
Length = 139
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%)
Query: 45 LGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKV 104
L PF +GV +V PKKPNSA RK V+LS G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 38 LSAPFKRGVCTRVATMTPKKPNSALRKFARVKLSNGIEVNAYIPGEGHNLQEHSIVLIRG 97
Query: 105 GRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
G+VKDLPG++ VRG D V K++Q
Sbjct: 98 GKVKDLPGIRYHIVRGTQDTTGVAKRSQ 125
>sp|Q4A8T5|RS12_MYCH7 30S ribosomal protein S12 OS=Mycoplasma hyopneumoniae (strain 7448)
GN=rpsL PE=3 SV=1
Length = 139
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%)
Query: 45 LGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKV 104
L PF +GV +V PKKPNSA RK V+LS G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 38 LSAPFKRGVCTRVATMTPKKPNSALRKFARVKLSNGIEVNAYIPGEGHNLQEHSIVLIRG 97
Query: 105 GRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
G+VKDLPG++ VRG D V K++Q
Sbjct: 98 GKVKDLPGIRYHIVRGTQDTTGVAKRSQ 125
>sp|Q601W6|RS12_MYCH2 30S ribosomal protein S12 OS=Mycoplasma hyopneumoniae (strain 232)
GN=rpsL PE=3 SV=1
Length = 139
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%)
Query: 45 LGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKV 104
L PF +GV +V PKKPNSA RK V+LS G E+ AYIPGEGHNLQEH+IVL +
Sbjct: 38 LSAPFKRGVCTRVATMTPKKPNSALRKFARVKLSNGIEVNAYIPGEGHNLQEHSIVLIRG 97
Query: 105 GRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
G+VKDLPG++ VRG D V K++Q
Sbjct: 98 GKVKDLPGIRYHIVRGTQDTTGVAKRSQ 125
>sp|Q4JT37|RS12_CORJK 30S ribosomal protein S12 OS=Corynebacterium jeikeium (strain K411)
GN=rpsL PE=3 SV=2
Length = 123
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKK-RPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG H K + L G P +GV +V PKKPNSA RK VRL++G E
Sbjct: 3 TIQQLVRKGRHDKSTKVATAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGIE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRV+DLPGV+ K VRG D V + Q
Sbjct: 63 VSAYIPGEGHNLQEHSMVLVRGGRVRDLPGVRYKIVRGSLDTQGVKDRKQ 112
>sp|A1SNN8|RS12_NOCSJ 30S ribosomal protein S12 OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=rpsL PE=3 SV=1
Length = 124
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG K + P L G P +GV +V PKKPNSA RK VRLS+G E
Sbjct: 3 TIQQLVRKGRQDKVSKNKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSGVE 62
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPG GHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 63 VTAYIPGVGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGTLDTQGVKNRKQ 112
>sp|C5CGR9|RS12_KOSOT 30S ribosomal protein S12 OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=rpsL PE=3 SV=1
Length = 124
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 60/89 (67%)
Query: 44 LLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCK 103
L P +GV ++V PKKPNSA RK VRLS G E+ AYIPGEGHNLQEH++VL +
Sbjct: 24 LENNPQKRGVCVRVSTMTPKKPNSALRKIARVRLSNGTEVTAYIPGEGHNLQEHSVVLVR 83
Query: 104 VGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
GRVKDLPGV+ K +RG D V + Q
Sbjct: 84 GGRVKDLPGVRYKIIRGALDAEGVANRRQ 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,662,671
Number of Sequences: 539616
Number of extensions: 2175271
Number of successful extensions: 5717
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4652
Number of HSP's gapped (non-prelim): 1029
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)