Query psy2262
Match_columns 137
No_of_seqs 109 out of 537
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:14:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_L 30S ribosomal protein S 100.0 4.1E-60 1.4E-64 362.1 10.3 113 21-133 3-116 (135)
2 3u5c_X RP37, S28, YS14, 40S ri 100.0 7.1E-44 2.4E-48 275.1 8.9 97 40-136 39-144 (145)
3 2xzm_L 40S ribosomal protein S 100.0 2.2E-43 7.7E-48 271.5 9.6 79 42-120 40-126 (142)
4 3j20_N 30S ribosomal protein S 100.0 1.9E-43 6.5E-48 273.2 7.7 97 40-136 40-146 (147)
5 2dgy_A MGC11102 protein; EIF-1 87.9 0.83 2.8E-05 33.1 4.9 47 48-104 15-64 (111)
6 1d7q_A Translation initiation 80.8 1.6 5.6E-05 33.1 3.9 48 47-104 30-80 (143)
7 1jt8_A EIF-1A, probable transl 79.1 0.78 2.7E-05 32.9 1.6 48 48-105 20-70 (102)
8 3i4o_A Translation initiation 73.6 5 0.00017 27.4 4.4 46 49-104 15-64 (79)
9 1ynx_A Replication factor-A pr 52.0 8.1 0.00028 26.8 2.2 44 64-109 34-84 (114)
10 1ah9_A IF1, initiation factor 40.5 24 0.00083 22.7 3.0 44 50-103 8-55 (71)
11 2k50_A Replication factor A re 39.4 84 0.0029 21.0 6.0 39 70-109 42-86 (115)
12 2oqk_A Putative translation in 34.3 22 0.00076 25.4 2.3 47 47-103 31-80 (117)
13 2in0_A Endonuclease PI-MTUI; h 21.9 1.2E+02 0.0041 20.8 4.2 58 68-125 52-123 (139)
14 3tee_A Flagella basal BODY P-r 21.2 82 0.0028 24.4 3.5 27 66-92 167-193 (219)
No 1
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=100.00 E-value=4.1e-60 Score=362.10 Aligned_cols=113 Identities=49% Similarity=0.733 Sum_probs=106.2
Q ss_pred CchhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccce
Q psy2262 21 KTKTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNI 99 (137)
Q Consensus 21 ~M~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~ 99 (137)
.|+|||||++++|.+++++ +.++|++|||++|||+++++++|||||||+||||||||+||++|+||||||||||||||+
T Consensus 3 ~M~TinQl~r~~r~~~~~k~k~~~l~g~Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL~ngk~VtAyIPG~GhnlqEhs~ 82 (135)
T 2vqe_L 3 ALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSV 82 (135)
T ss_dssp --CCHHHHHHTCCCCCCCCCSCCCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSCCCCCTTCE
T ss_pred ccccHHHHhccCCCCCCccCcCCcccCCCCcCeEEEEEEecCCCCCchhheeEEEEEcCCCCEEEEEcCCCCCccCcCCE
Confidence 5999999999987766555 568999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccCCCCCceEEEeeeecCCccccccccc
Q psy2262 100 VLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQL 133 (137)
Q Consensus 100 VLVrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~ 133 (137)
|||||||++|||||+||+|||+|||+||.+|+++
T Consensus 83 VLVrGgrv~DlPGVrykvVrG~lD~~gv~~R~~~ 116 (135)
T 2vqe_L 83 VLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKS 116 (135)
T ss_dssp EEEEECCCTTSTTCCEEECTTSTTSCCCTTCCSS
T ss_pred EEEcCCCcCCCCCeeEEEEeEeecCccccccccc
Confidence 9999999999999999999999999999999876
No 2
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=100.00 E-value=7.1e-44 Score=275.05 Aligned_cols=97 Identities=37% Similarity=0.567 Sum_probs=88.3
Q ss_pred CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec-----CccCCCC
Q psy2262 40 PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLP 111 (137)
Q Consensus 40 k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG-----Grv~DLP 111 (137)
|+++|+++||++|||+++++++|||||||+|||||||| +||++|+|||||||| ||||||+|||+| |+++|||
T Consensus 39 K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlP 118 (145)
T 3u5c_X 39 KSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIP 118 (145)
T ss_dssp HSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSST
T ss_pred ccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCccccCCcCCEEEEEeccccCCccCCCC
Confidence 56899999999999999999999999999999999999 699999999999998 999999999999 8999999
Q ss_pred CceEEEeeee-cCCcccccccccCCC
Q psy2262 112 GVKIKCVRGV-YDLPHVVKKTQLTPG 136 (137)
Q Consensus 112 GVkykvVRG~-~D~~gv~~Rk~~~~~ 136 (137)
||+|+|||+. .-|..+..-++++|-
T Consensus 119 GVrykvVrv~~vsl~al~kgkkekp~ 144 (145)
T 3u5c_X 119 GVRFKVVKVSGVSLLALWKEKKEKPR 144 (145)
T ss_dssp TCCEEEEESTTTCHHHHHHTSCCCCC
T ss_pred ceeEEEEEECCeeHHHHHhccccCCC
Confidence 9999999994 344466666667763
No 3
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=100.00 E-value=2.2e-43 Score=271.54 Aligned_cols=79 Identities=41% Similarity=0.620 Sum_probs=77.7
Q ss_pred CCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec-----CccCCCCCc
Q psy2262 42 QPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLPGV 113 (137)
Q Consensus 42 ~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG-----Grv~DLPGV 113 (137)
++|+++||++|||+++++++|||||||+|||||||| +||++|+|||||||| ||||||+|||+| |+++|||||
T Consensus 40 ~pl~g~pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGV 119 (142)
T 2xzm_L 40 NPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGV 119 (142)
T ss_dssp STTTTCSEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEESSSSSSCCTTCSSC
T ss_pred CcccCCCccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCcccccccCCEEEEEecccCCCccCCCCCc
Confidence 899999999999999999999999999999999999 799999999999997 999999999999 999999999
Q ss_pred eEEEeee
Q psy2262 114 KIKCVRG 120 (137)
Q Consensus 114 kykvVRG 120 (137)
+|++||+
T Consensus 120 rykvVrv 126 (142)
T 2xzm_L 120 RFKVVCV 126 (142)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999997
No 4
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-43 Score=273.18 Aligned_cols=97 Identities=37% Similarity=0.632 Sum_probs=87.4
Q ss_pred CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEe-CCCCEEEEEecCCCC--CCCccceEEEec------CccCCC
Q psy2262 40 PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGEGH--NLQEHNIVLCKV------GRVKDL 110 (137)
Q Consensus 40 k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrL-sngk~v~AyIPGeGh--nlqehs~VLVrG------Grv~DL 110 (137)
|+++|+++||++|||+++++++|||||||+|||||||| +||++|+|||||||| ||||||+|||+| |+++||
T Consensus 40 K~~~l~g~pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~Ghln~lqEh~~VLV~G~gg~~gg~v~Dl 119 (147)
T 3j20_N 40 KSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDI 119 (147)
T ss_dssp HHSSSTTCSCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEECSCTTSCCCSSC
T ss_pred ccchhhcCCccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcCCchhhcccccCCEEEEeeccCcCCCccCCC
Confidence 56899999999999999999999999999999999999 699999999999999 999999999999 679999
Q ss_pred CCceEEEeeee-cCCcccccccccCCC
Q psy2262 111 PGVKIKCVRGV-YDLPHVVKKTQLTPG 136 (137)
Q Consensus 111 PGVkykvVRG~-~D~~gv~~Rk~~~~~ 136 (137)
|||+|+|||.. .-|..+..-++++|-
T Consensus 120 PGVrykvVkv~~vsl~al~kgkkekp~ 146 (147)
T 3j20_N 120 PGIRYKVVKVNRVSLKELVKGRKEKPR 146 (147)
T ss_dssp SSCCEEEEEETTEEHHHHHSTTTCCCC
T ss_pred CceeEEEEEECCeeHHHHHhcccccCC
Confidence 99999999984 344455566667663
No 5
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.94 E-value=0.83 Score=33.15 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=37.6
Q ss_pred CccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV 104 (137)
Q Consensus 48 Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG 104 (137)
-|.-|.|++.. ||. -.+|+|.||.+++|+|||-=. .+-+.|.|+|+=
T Consensus 15 ge~~g~V~~~l------gn~----~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 15 QQQIVRVLRTP------GNN----LHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp SCEEEEEEECC------SSS----EEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred CeEEEEEEEeC------CCC----EEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 46777777765 333 478999999999999999765 688999999984
No 6
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=80.75 E-value=1.6 Score=33.10 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262 47 KPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV 104 (137)
Q Consensus 47 ~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG 104 (137)
.-|.-|.|++.. ||. -.+|+|.||.+++|+|||-=. .+-+.|.|+|.=
T Consensus 30 ege~~g~V~e~l------gn~----~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 30 DGQEYAQVIKML------GNG----RLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp TTEEEEEEEEEC------SSS----EEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CCEEEEEEEEEc------CCC----EEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 346777777765 343 378999999999999999753 788999999974
No 7
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=79.12 E-value=0.78 Score=32.89 Aligned_cols=48 Identities=29% Similarity=0.330 Sum_probs=36.6
Q ss_pred CccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEecC
Q psy2262 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKVG 105 (137)
Q Consensus 48 Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrGG 105 (137)
-|.-|.|++.. ||. -.+|+|.||.+++|+|||-=. -+-+.|.|+|+=-
T Consensus 20 ~e~~g~V~~~l------gn~----~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 20 NEILGIIEQML------GAS----RVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CCEEEEEECSS------CSS----EEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred CEEEEEEEEEc------CCC----EEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 45667776654 343 378999999999999998653 7888999999743
No 8
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=73.58 E-value=5 Score=27.44 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=35.3
Q ss_pred ccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC----CCCCccceEEEec
Q psy2262 49 FAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG----HNLQEHNIVLCKV 104 (137)
Q Consensus 49 q~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG----hnlqehs~VLVrG 104 (137)
+..|+|++.+ ||+ -.+|+|.||.++.|+|+|-= -.+-+-|.|+|+=
T Consensus 15 e~~G~Vik~l------~n~----~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~ 64 (79)
T 3i4o_A 15 EVEGRVVEPL------PNA----MFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVEL 64 (79)
T ss_dssp EEEEEEEEEE------TTT----EEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEE
T ss_pred EEEEEEEEEc------CCC----EEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEE
Confidence 4578888876 443 36799999999999999853 2578888888863
No 9
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.95 E-value=8.1 Score=26.75 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=36.2
Q ss_pred CCCccccceEEEEe--CCCCEEEEEecCCCC-----CCCccceEEEecCccCC
Q psy2262 64 KPNSANRKCVLVRL--STGKEMVAYIPGEGH-----NLQEHNIVLCKVGRVKD 109 (137)
Q Consensus 64 KPNSA~RKvakVrL--sngk~v~AyIPGeGh-----nlqehs~VLVrGGrv~D 109 (137)
.+++ ..|++-+-| .+| +|-|-+.++-. .|+|.+++.|.+++++-
T Consensus 34 ~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~ 84 (114)
T 1ynx_A 34 NQRG-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQP 84 (114)
T ss_dssp CSSC-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEE
T ss_pred cCCC-CceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEE
Confidence 4444 789999999 678 99999998753 59999999999998764
No 10
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=40.53 E-value=24 Score=22.69 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=30.4
Q ss_pred cceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEe
Q psy2262 50 AKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCK 103 (137)
Q Consensus 50 ~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVr 103 (137)
..|.|++... | --..|++.||..+.|+|+|-= + .+-.-|.|+|+
T Consensus 8 ~~G~Vi~~lg------~----~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve 55 (71)
T 1ah9_A 8 MQGTVLETLP------N----TMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVE 55 (71)
T ss_dssp CCEEEEEECS------S----SEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCE
T ss_pred EEEEEEEEeC------C----cEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEE
Confidence 4577776543 2 246789999999999999973 1 34456777665
No 11
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=39.43 E-value=84 Score=21.00 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=27.0
Q ss_pred cceEEEEe--CCCCEEEEEecCCCC----CCCccceEEEecCccCC
Q psy2262 70 RKCVLVRL--STGKEMVAYIPGEGH----NLQEHNIVLCKVGRVKD 109 (137)
Q Consensus 70 RKvakVrL--sngk~v~AyIPGeGh----nlqehs~VLVrGGrv~D 109 (137)
.+.+.+.| .+| .|-+-+=++-. .+++.++|.|+|..+++
T Consensus 42 ~~~~~~~l~D~TG-~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~ 86 (115)
T 2k50_A 42 GKLANVIIADDTG-ELRAVFWTENIKLLKKFREGDVIRIKDVNIRG 86 (115)
T ss_dssp CEEEEEEEEETTE-EEEEEEETTGGGGGGTCCTTSEEEEEEEEECC
T ss_pred EEEEEEEEEeCCC-eEEEEEeCchhhhhhcCCCCCEEEEEeeEEcc
Confidence 57778888 455 44433334432 68999999999988766
No 12
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=34.32 E-value=22 Score=25.39 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=36.7
Q ss_pred CCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEe
Q psy2262 47 KPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCK 103 (137)
Q Consensus 47 ~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVr 103 (137)
.-|..|+|++... | --..|++.||..+.|+|||-=- .+-.-|.|+|.
T Consensus 31 ~~e~~G~Vi~~lg------n----~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve 80 (117)
T 2oqk_A 31 EGQEYGQVQRMLG------N----GRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVS 80 (117)
T ss_dssp TTEEEEEEEEEEE------T----TEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEE
T ss_pred CCEEEEEEEEEcC------C----CEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEE
Confidence 3478899999876 2 2578999999999999998632 45578888886
No 13
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=21.93 E-value=1.2e+02 Score=20.84 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=37.0
Q ss_pred cccceEEEEeCCCCEEEE-----EecCCC----CCCCccceEEEecCccCC-----CCCceEEEeeeecCCc
Q psy2262 68 ANRKCVLVRLSTGKEMVA-----YIPGEG----HNLQEHNIVLCKVGRVKD-----LPGVKIKCVRGVYDLP 125 (137)
Q Consensus 68 A~RKvakVrLsngk~v~A-----yIPGeG----hnlqehs~VLVrGGrv~D-----LPGVkykvVRG~~D~~ 125 (137)
..+.+.++++++|.++.+ |.-.+| -.|++.|.|++..|...+ +-.|.+.-..++|||.
T Consensus 52 ~~~~~~~i~t~~G~~i~~T~~H~~~t~~gw~~a~~L~~Gd~v~~~~~~~~~~~~~~V~~I~~~~~~~VYnl~ 123 (139)
T 2in0_A 52 GTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLE 123 (139)
T ss_dssp EEEEEEEEEETTSCEEEECTTCEEEETTEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEecCCCeEEecCCcEEHHHCCCCCEEEeCCCcceeecceEEEEEeecCCCcEEEEE
Confidence 367899999999998875 222233 267888999988764332 1223334346678763
No 14
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=21.20 E-value=82 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=21.5
Q ss_pred CccccceEEEEeCCCCEEEEEecCCCC
Q psy2262 66 NSANRKCVLVRLSTGKEMVAYIPGEGH 92 (137)
Q Consensus 66 NSA~RKvakVrLsngk~v~AyIPGeGh 92 (137)
|=+.=-.++|++++|+.|.|.+-++|-
T Consensus 167 ~G~~Gd~IrVr~~Sgkiv~g~V~~~g~ 193 (219)
T 3tee_A 167 NAAVAQNARVRMTSGQIVSGTVDSDGN 193 (219)
T ss_dssp CBCTTSEEEEEETTSCEEEEEECTTSC
T ss_pred ccCCCCEEEEECCCCCEEEEEEecCCE
Confidence 344556678899889999999988886
Done!