Query psy2262
Match_columns 137
No_of_seqs 109 out of 537
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 20:15:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2262.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2262hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubl1 b.40.4.5 (L:5-122) Rib 100.0 5.1E-61 3.7E-65 358.7 12.1 112 23-134 1-113 (118)
2 d1ah9a_ b.40.4.5 (A:) Translat 91.5 0.079 5.7E-06 34.3 3.4 46 49-104 7-56 (71)
3 d1hr0w_ b.40.4.5 (W:) Translat 82.3 0.065 4.7E-06 34.7 -1.4 46 49-104 8-57 (71)
4 d1q2la4 d.185.1.1 (A:24-263) P 65.7 8.2 0.0006 26.6 6.3 54 57-112 6-59 (240)
5 d1d7qa_ b.40.4.5 (A:) Translat 63.5 3.3 0.00024 28.9 3.8 47 48-104 31-80 (143)
6 d1jt8a_ b.40.4.5 (A:) Archaeal 62.8 1.5 0.00011 29.3 1.6 48 47-104 19-69 (102)
7 d1o7ia_ b.40.4.3 (A:) Archaeal 47.3 12 0.00091 24.2 4.3 63 50-112 17-81 (115)
8 d1pb1a_ c.77.1.1 (A:) Isocitra 37.0 5.6 0.00041 31.9 1.4 17 75-91 14-36 (416)
9 d1jmca1 b.40.4.3 (A:183-298) R 36.4 17 0.0012 23.4 3.5 46 64-111 32-84 (116)
10 d1eara1 b.107.1.1 (A:1-74) Ure 28.6 57 0.0042 19.6 5.2 38 68-106 30-67 (74)
11 d3bula2 c.23.6.1 (A:741-896) M 21.4 19 0.0014 24.8 1.8 17 78-94 5-21 (156)
No 1
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=5.1e-61 Score=358.70 Aligned_cols=112 Identities=49% Similarity=0.744 Sum_probs=106.3
Q ss_pred hhhHHHHhcCCCCCCCC-CCCCCCCCCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEE
Q psy2262 23 KTLWDMHMKGPHYKKRP-PRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVL 101 (137)
Q Consensus 23 ~TinQl~~~~~~~k~~~-k~~~L~~~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VL 101 (137)
||||||++.+|+++.++ +.++|++|||++|||+++++++|||||||+||||+|+|+||++|+||||||||||||||+||
T Consensus 1 PTinQL~rk~R~kk~~k~k~~aL~~~PqkkGvc~kv~~~~PKKPNSA~RKvarVrLsng~~v~AyIPG~GhnlqEHs~VL 80 (118)
T d2uubl1 1 PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL 80 (118)
T ss_dssp CCHHHHHHHCCCCCCCCCSCCCTTTCSCEEEEEEEEEEECCCTTCCSCEEEEEEEETTSCEEEEECCSSCCCCCTTCEEE
T ss_pred CCHhHhcccCCCCCccCCCCcccccCCccceEEEEEEEeccCCCcceeeeEEEEEecCCeEEEEEcCCCCcCcccCCEEE
Confidence 69999999988766555 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCCCceEEEeeeecCCcccccccccC
Q psy2262 102 CKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLT 134 (137)
Q Consensus 102 VrGGrv~DLPGVkykvVRG~~D~~gv~~Rk~~~ 134 (137)
|||||++|||||+|++|||+|||++|.+|+++.
T Consensus 81 vrGGrv~DlPGVry~vvrG~~D~~~v~~Rk~~R 113 (118)
T d2uubl1 81 IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSR 113 (118)
T ss_dssp ECCCCCTTSTTCCEEBCTTSTTCCCCTTCCSST
T ss_pred EeCCccccCCCcEEEEEeeeecccccccccccc
Confidence 999999999999999999999999999998864
No 2
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=91.50 E-value=0.079 Score=34.26 Aligned_cols=46 Identities=28% Similarity=0.412 Sum_probs=35.8
Q ss_pred ccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEec
Q psy2262 49 FAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCKV 104 (137)
Q Consensus 49 q~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVrG 104 (137)
+..|+|++.+ ||. -.+|+|.||++++|+|||-= + .+.+.|.|+|+=
T Consensus 7 e~~G~V~e~l------g~~----~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel 56 (71)
T d1ah9a_ 7 EMQGTVLETL------PNT----MFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEL 56 (71)
T ss_dssp ECCEEEEEEC------SSS----EEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEE
T ss_pred EEEEEEEEEc------CCC----EEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEE
Confidence 4557777765 343 37899999999999999975 2 788999998873
No 3
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=82.30 E-value=0.065 Score=34.68 Aligned_cols=46 Identities=35% Similarity=0.629 Sum_probs=34.5
Q ss_pred ccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCC--C--CCCccceEEEec
Q psy2262 49 FAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEG--H--NLQEHNIVLCKV 104 (137)
Q Consensus 49 q~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeG--h--nlqehs~VLVrG 104 (137)
+..|+|++.+ ||.- .+|+|.||++++|||||-= + .+.+.|.|+|+=
T Consensus 8 ~~~G~V~~~l------~~~~----f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel 57 (71)
T d1hr0w_ 8 RTEGVVTEAL------PNAT----FRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEI 57 (71)
T ss_dssp CCEEECCCCC------TTTB----CCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEEC
T ss_pred EEEEEEEEEC------CCCE----EEEEECCCCEEEEEecchhheeeEEecCCCEEEEEE
Confidence 3456665543 5554 5689999999999999864 2 788999999974
No 4
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]}
Probab=65.70 E-value=8.2 Score=26.60 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=37.2
Q ss_pred eeecCCCCCCccccceEEEEeCCCCEEEEEecCCCCCCCccceEEEecCccCCCCC
Q psy2262 57 VLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPG 112 (137)
Q Consensus 57 v~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGhnlqehs~VLVrGGrv~DLPG 112 (137)
-+-.+.+||.+..|..=.++|+||-+|+. +|.... -.-+-.+.|.+|...|-+|
T Consensus 6 ~~~~~~~k~~~d~~~~~~~~L~NGl~V~~-~~~~~~-~~v~~~l~~~~Gs~~e~~~ 59 (240)
T d1q2la4 6 PIQETIRKSDKDNRQYQAIRLDNGMVVLL-VSDPQA-VKSLSALVVPVGSLEDPEA 59 (240)
T ss_dssp ECCSCCCCCTTCCCEEEEEEETTSCEEEE-EECTTC-SSEEEEEEESCCGGGCCGG
T ss_pred EccccCCCCCCCCcceEEEEcCCCCEEEE-EECCCC-CEEEEEEEEeCCccccccc
Confidence 34456778999999999999999999944 554321 1122234577888887765
No 5
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.52 E-value=3.3 Score=28.90 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=38.8
Q ss_pred CccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262 48 PFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV 104 (137)
Q Consensus 48 Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG 104 (137)
-|.-|+|++.++- --+.|.+.+|.+.+|.|||--. .+...|.|||.=
T Consensus 31 ~e~ya~V~k~lG~----------~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~VlV~~ 80 (143)
T d1d7qa_ 31 GQEYAQVIKMLGN----------GRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp TEEEEEEEEECSS----------SEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CeEEEEEEEEcCC----------CEEEEEECCCCEEEEEecCcceeEEEEeCCCEEEEec
Confidence 3778888888763 2478889999999999999874 799999999953
No 6
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=62.80 E-value=1.5 Score=29.35 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=39.0
Q ss_pred CCccceEEEEeeecCCCCCCccccceEEEEeCCCCEEEEEecCCCC---CCCccceEEEec
Q psy2262 47 KPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGEGH---NLQEHNIVLCKV 104 (137)
Q Consensus 47 ~Pq~KGi~lkv~~~~PKKPNSA~RKvakVrLsngk~v~AyIPGeGh---nlqehs~VLVrG 104 (137)
--|.-|+|.+.++- --+.|.+.||.+.+|+|||--. .+...|.|||.=
T Consensus 19 e~e~y~~V~k~lG~----------~~~~V~c~dg~~rl~~irGK~Rk~~~I~~Gd~VlV~~ 69 (102)
T d1jt8a_ 19 ENEILGIIEQMLGA----------SRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKP 69 (102)
T ss_dssp SCCEEEEEECSSCS----------SEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECC
T ss_pred CCEEEEEEEEEcCC----------CEEEEEECCCCEEEEEEcCCcceeeEecCCCEEEEEe
Confidence 34788999887763 2478889999999999998753 899999999963
No 7
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=47.28 E-value=12 Score=24.18 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=37.2
Q ss_pred cceEEEEeeecCCCCCCccccceEEEEe--CCCCEEEEEecCCCCCCCccceEEEecCccCCCCC
Q psy2262 50 AKGVVLKVLIKKPKKPNSANRKCVLVRL--STGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPG 112 (137)
Q Consensus 50 ~KGi~lkv~~~~PKKPNSA~RKvakVrL--sngk~v~AyIPGeGhnlqehs~VLVrGGrv~DLPG 112 (137)
..|.|+++......+-+...++++.+.+ .+|.--+.+-.-..-.|++.++|.|+++.++.--|
T Consensus 17 i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~i~~~~W~~~~~~l~~Gdvv~i~na~v~~~~g 81 (115)
T d1o7ia_ 17 VTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTAFKG 81 (115)
T ss_dssp EEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEEEETT
T ss_pred EEEEEEECCCCceeecCCCCEEEEEEEEEcCCCeEEEEEeccccccCCCCCEEEEeeEEEEEECC
Confidence 3455555543322222334578888887 56654333332233479999999999988875433
No 8
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]}
Probab=37.04 E-value=5.6 Score=31.89 Aligned_cols=17 Identities=41% Similarity=0.935 Sum_probs=13.5
Q ss_pred EEeCCCCE------EEEEecCCC
Q psy2262 75 VRLSTGKE------MVAYIPGEG 91 (137)
Q Consensus 75 VrLsngk~------v~AyIPGeG 91 (137)
|.++|++- ++|+|||+|
T Consensus 14 ~~~~~~~~~~~~~p~IavipGDG 36 (416)
T d1pb1a_ 14 ITLQNGKLNVPENPIIPYIEGDG 36 (416)
T ss_dssp CEEETTEEECCSSBEEEEECCST
T ss_pred EEEECCEEeCCCCCEEEEECCCc
Confidence 56777664 599999999
No 9
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.40 E-value=17 Score=23.43 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=36.3
Q ss_pred CCCccccceEEEEe--CCCCEEEEEecCCCC-----CCCccceEEEecCccCCCC
Q psy2262 64 KPNSANRKCVLVRL--STGKEMVAYIPGEGH-----NLQEHNIVLCKVGRVKDLP 111 (137)
Q Consensus 64 KPNSA~RKvakVrL--sngk~v~AyIPGeGh-----nlqehs~VLVrGGrv~DLP 111 (137)
+.+. ..|++.+-| .+| +|-|-++++-. .|+|.++..|.+++|+.--
T Consensus 32 ~~~~-~g~v~~~~l~De~G-~I~~t~~~~~~~~f~~~l~~G~vy~i~~~~V~~~~ 84 (116)
T d1jmca1 32 NSRG-EGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIAN 84 (116)
T ss_dssp CSSC-EEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECC
T ss_pred CCCC-CceEEEEEEEcCCC-CEEEEEchhhhhhhHhhcccCCEEEEcceEEEEcc
Confidence 3444 567888888 668 69999998764 7999999999999886543
No 10
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE, N-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=28.61 E-value=57 Score=19.60 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=28.9
Q ss_pred cccceEEEEeCCCCEEEEEecCCCCCCCccceEEEecCc
Q psy2262 68 ANRKCVLVRLSTGKEMVAYIPGEGHNLQEHNIVLCKVGR 106 (137)
Q Consensus 68 A~RKvakVrLsngk~v~AyIPGeGhnlqehs~VLVrGGr 106 (137)
+.|+..|+...+|.++.-+.| .|..|+.-|.+.-..|+
T Consensus 30 r~krr~r~~t~~G~ei~i~L~-r~~~L~~GDvL~~dd~~ 67 (74)
T d1eara1 30 LNKRILRKETENGTDIAIKLE-NSGTLRYGDVLYESDDT 67 (74)
T ss_dssp GGCSEEEEECTTCCEEEEECS-SCCCCCTTEEEEECSSE
T ss_pred hhceEEEEECCCCCEEEEECC-CCcEecCCCEEEeCCCC
Confidence 346677777889999999999 56778877777666554
No 11
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.45 E-value=19 Score=24.76 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=15.1
Q ss_pred CCCCEEEEEecCCCCCC
Q psy2262 78 STGKEMVAYIPGEGHNL 94 (137)
Q Consensus 78 sngk~v~AyIPGeGhnl 94 (137)
++|+.|++-++||.|.+
T Consensus 5 ~~gkivi~tv~gD~Hdi 21 (156)
T d3bula2 5 TNGKMVIATVKGDVHDI 21 (156)
T ss_dssp CSCEEEEEEBTTCCCCH
T ss_pred cCCEEEEEeeCCChhhH
Confidence 68999999999999954
Done!