RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2262
(137 letters)
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1
PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L*
1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O*
1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Length = 135
Score = 95.9 bits (238), Expect = 1e-26
Identities = 56/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 24 TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
T+ + KG ++ + P L G PF +GV V PKKPNSA RK VRL++G E
Sbjct: 6 TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 65
Query: 83 MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V + +
Sbjct: 66 VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKK 115
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 95.1 bits (236), Expect = 3e-26
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 31 KGPHYKKRPPRQ----PLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLS-TGKEMVA 85
+ KR P +G AKG+V + + + K+PNSA RKCV V L K++ A
Sbjct: 25 ADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAA 84
Query: 86 YIPGEG--HNLQEHNIVLC-----KVGRVKDLPGVKIK--CVRGVYDLPHVVKKTQ 132
++P +G + L E++ VL + V D+PGV+ K CV+G+ L K +
Sbjct: 85 FVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKE 140
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 89.4 bits (221), Expect = 6e-24
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 21 KTKTLWDMHMKGPHYKKRPPRQPLLGKPFAKGVVLKVLIKKPKKPNSANRKCVLVRL-ST 79
+ + + K P G AKG+VL+ L + K+PNSA RKCV V+L
Sbjct: 20 RNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKN 79
Query: 80 GKEMVAYIPGEG--HNLQEHNIVL----CKVGRVK-DLPGVKIKCVRGVY 122
GK++ A++P +G + + E++ VL + G+ K D+PGV+ K V+
Sbjct: 80 GKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSG 129
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 29.4 bits (66), Expect = 0.38
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 115 IKCVRGVYDLPHVVKKTQLTPG 136
+KC+ V+D P VV+ +
Sbjct: 213 LKCI--VFDRPQVVENLSGSNN 232
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.9 bits (62), Expect = 1.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 115 IKCVRGVYDLPHVVKKTQLTPG 136
I + +DLPHV++ G
Sbjct: 228 INAI--NFDLPHVIQDAPAFSG 247
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.5 bits (61), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 115 IKCVRGVYDLPHVVKKTQLTPG 136
IK V +DLPHV+ + PG
Sbjct: 226 IKGV--NFDLPHVISEAPQFPG 245
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 27.1 bits (60), Expect = 1.8
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 114 KIKCVRGVYDLPHVVKKTQLTPG 136
IK + +DLP V++ G
Sbjct: 233 LIKGI--NFDLPQVIENAPPLSG 253
Score = 25.2 bits (55), Expect = 9.5
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 4 LVIDASLSDILPVWVREKTKTLWDMHM 30
++++ L + K + D M
Sbjct: 303 IIVEFILPEEPNTSEESKLVSTLDNLM 329
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 26.9 bits (60), Expect = 2.2
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 115 IKCVRGVYDLPHVVKKTQLT 134
++ V + D VV + +L
Sbjct: 209 LQGV--LLDRAEVVARHRLD 226
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 26.1 bits (58), Expect = 3.8
Identities = 2/14 (14%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 115 IKCVRGVYDLPHVV 128
+ V ++ V
Sbjct: 208 VSAT--VLEMAGTV 219
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 26.1 bits (58), Expect = 3.9
Identities = 2/14 (14%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 115 IKCVRGVYDLPHVV 128
+ V + D +
Sbjct: 192 ARGV--MLDREGSL 203
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 26.2 bits (58), Expect = 3.9
Identities = 1/14 (7%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 115 IKCVRGVYDLPHVV 128
++ + +L
Sbjct: 207 LRGT--LVELAGPA 218
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 26.2 bits (58), Expect = 4.2
Identities = 2/23 (8%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 115 IKCVRGVYDLPHVVKKTQLTPGK 137
+ + +LP + +
Sbjct: 215 LDST--ILNLPGAIDLVNENAAE 235
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 26.2 bits (58), Expect = 4.4
Identities = 2/18 (11%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 115 IKCVRGVYDLPHVVKKTQ 132
++ + + P V ++ +
Sbjct: 227 LRGT--LLERPPVAEEAR 242
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 25.7 bits (57), Expect = 5.8
Identities = 3/14 (21%), Positives = 4/14 (28%), Gaps = 2/14 (14%)
Query: 115 IKCVRGVYDLPHVV 128
+ V DL
Sbjct: 194 LSGT--VLDLQGPA 205
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 25.6 bits (56), Expect = 6.2
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 121 VYDLPHVVKKTQLTPG 136
V+D P VV
Sbjct: 222 VFDQPQVVGNLTGNEN 237
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 25.4 bits (56), Expect = 8.2
Identities = 2/23 (8%), Positives = 6/23 (26%), Gaps = 2/23 (8%)
Query: 115 IKCVRGVYDLPHVVKKTQLTPGK 137
+ D V++ +
Sbjct: 190 AEIF--GVDWASVLEVAKENARI 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.431
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,087,744
Number of extensions: 112482
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 21
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)