RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2262
         (137 letters)



>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score =  122 bits (309), Expect = 6e-38
 Identities = 56/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 24  TLWDMHMKGPHYKKRPPRQPLL-GKPFAKGVVLKVLIKKPKKPNSANRKCVLVRLSTGKE 82
           T+  +  KG    ++  + P L G PF +GV   V    PKKPNSA RK   VRL++G E
Sbjct: 2   TINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYE 61

Query: 83  MVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 132
           + AYIPGEGHNLQEH++VL + GRVKDLPGV+   VRGVYD   V  + +
Sbjct: 62  VTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKK 111


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 28.3 bits (62), Expect = 0.31
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 80  GKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIK 116
              +V   P  G  L     VL    RV  +  +++ 
Sbjct: 281 NIPVVLSHPYVGQCLVGK--VLDGDFRVTGINALRVV 315


>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus
          subtilis [TaxId: 1423]}
          Length = 93

 Score = 22.9 bits (49), Expect = 8.6
 Identities = 2/17 (11%), Positives = 5/17 (29%)

Query: 21 KTKTLWDMHMKGPHYKK 37
          + +    +H    H   
Sbjct: 59 ENEEAVKIHFTKKHTID 75


>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512
          {Nitrosomonas europaea [TaxId: 915]}
          Length = 100

 Score = 23.1 bits (49), Expect = 9.6
 Identities = 7/49 (14%), Positives = 10/49 (20%), Gaps = 3/49 (6%)

Query: 3  NLVIDASLSDILPVWVRE--KTKTLWDMHMKGPHYKK-RPPRQPLLGKP 48
               A         V +    +     H+ G            LL  P
Sbjct: 37 TTAWFALKFGPSTFGVFDAFADEAGRQAHLNGQIAAALMANAATLLSSP 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,832
Number of extensions: 22296
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)