BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2263
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 108/138 (78%)
Query: 18 KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
++ LCKD GKIGLR+ +I G+FV LVQ SPA+LVGLRFGDQ+LQ+NG+ AG + +
Sbjct: 7 EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66
Query: 78 VHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLL 137
H +L+ I++ +RDRPFER +T+HKDS GHVGF FK G+I +VK+SSA+RNGLL
Sbjct: 67 AHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLL 126
Query: 138 TDHHILEVNGQNVVGLKN 155
T+H+I E+NGQNV+GLK+
Sbjct: 127 TEHNICEINGQNVIGLKD 144
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 36/161 (22%)
Query: 101 RNVTLHKDSAGHVGFQFKR---GQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKND 156
R V L KD G +G + K G ++LV+ +S AS GL +L++NG+N G +D
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 157 --------------------------------SAGHVGFQFKRGQIIRLVKESSASRNGL 184
S GHVGF FK G+I +VK+SSA+RNGL
Sbjct: 66 KAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 185 LTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225
LT+H+I E+NGQNV+GLKD +I +I+ + V+ +TIMP++
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF 166
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 106/138 (76%)
Query: 18 KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
++ LCKD GKIGLR+ +I G+FV LVQ SPA+LVGLRFGDQ+LQ+NG+ AG + +
Sbjct: 7 EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66
Query: 78 VHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLL 137
H +L+ I+ +RDRPFER +T HKDS GHVGF FK G+I +VK+SSA+RNGLL
Sbjct: 67 AHKVLKQAFGEKITXTIRDRPFERTITXHKDSTGHVGFIFKNGKITSIVKDSSAARNGLL 126
Query: 138 TDHHILEVNGQNVVGLKN 155
T+H+I E+NGQNV+GLK+
Sbjct: 127 TEHNICEINGQNVIGLKD 144
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 36/161 (22%)
Query: 101 RNVTLHKDSAGHVGFQFKR---GQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKND 156
R V L KD G +G + K G ++LV+ +S AS GL +L++NG+N G +D
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 157 --------------------------------SAGHVGFQFKRGQIIRLVKESSASRNGL 184
S GHVGF FK G+I +VK+SSA+RNGL
Sbjct: 66 KAHKVLKQAFGEKITXTIRDRPFERTITXHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 185 LTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225
LT+H+I E+NGQNV+GLKD +I +I+ + V+ +TI P++
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIXPAF 166
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of
Syntenin
pdb|1R6J|A Chain A, Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
Length = 82
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%)
Query: 150 VVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREI 209
+ + DS GHVGF FK G+I +VK+SSA+RNGLLT+H+I E+NGQNV+GLKD +I +I
Sbjct: 7 TITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 66
Query: 210 VEKAPCVINLTIMPSY 225
+ + V+ +TIMP++
Sbjct: 67 LSTSGTVVTITIMPAF 82
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 48/55 (87%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKN 155
R +T+HKDS GHVGF FK G+I +VK+SSA+RNGLLT+H+I E+NGQNV+GLK+
Sbjct: 6 RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 60
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBY|B Chain B, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBX|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
An Interleukin 5 Receptor Alpha Peptide
Length = 79
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 56/73 (76%)
Query: 150 VVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREI 209
+ + DS GHVGF FK G+I +VK+SSA+RNGLLT+H+I E+NGQNV+GLKD +I +I
Sbjct: 7 TITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 66
Query: 210 VEKAPCVINLTIM 222
+ + V+ +TIM
Sbjct: 67 LSTSGTVVTITIM 79
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 48/55 (87%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKN 155
R +T+HKDS GHVGF FK G+I +VK+SSA+RNGLLT+H+I E+NGQNV+GLK+
Sbjct: 6 RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 60
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 34 AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92
+I V + + G PA G L GDQI+ +NG ++ G + ++++ + N S
Sbjct: 25 GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG--LKNQSR 82
Query: 93 V----VRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQ 148
V VR P + D +GF + G I L++ A R G+ H I+E+NGQ
Sbjct: 83 VKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQ 142
Query: 149 NVVGLKNDSAGHV 161
+VV ++ H+
Sbjct: 143 SVVATPHEKIVHI 155
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 154 KNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
+ D +GF + G I L++ A R G+ H I+E+NGQ+VV ++I I+ A
Sbjct: 100 RPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 159
Query: 214 PCVINLTIMPSYVYH 228
I++ MP+ +Y
Sbjct: 160 VGEIHMKTMPAAMYR 174
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 41 FVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
+C + G A G+R G +I+++NG++V + ++ +L N
Sbjct: 115 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 159
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
EG+F+ V E PAA G+R GD++L+VNG + G+ H+ LR V R+R
Sbjct: 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRER 93
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
I R+ +E A+R G+ +LEVNG + G + E E + A + + +
Sbjct: 38 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 90
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISIVVRD 96
+FV V+EG PA GL GD+I++VNG++V G QV AL++N +S++ +D
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKD 120
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 170 IIRLVKES-SASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
++ VKE A GL T I++VNG++V+G ++ +++ + + L++MP
Sbjct: 64 FVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMP 118
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
EG+F+ V E PAA G+R GD++L+VNG + G+ H+ LR
Sbjct: 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA 93
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
I R+ +E A+R G+ +LEVNG + G + E E + A + + +
Sbjct: 50 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 102
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 140 HHILEVNGQ--NVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQN 197
HH LE G V+ + D +GF + G I L++ A R G+ H I+E+NGQ+
Sbjct: 3 HHHLETMGNVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQS 62
Query: 198 VVGLKDKEIREIVEKAPCVINLTIMPS 224
VV ++I I+ A I++ MP+
Sbjct: 63 VVATPHEKIVHILSNAVGEIHMKTMPA 89
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 87 VNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVN 146
+ N++ V+ RP D +GF + G I L++ A R G+ H I+E+N
Sbjct: 9 MGNVTTVLIRRP---------DLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEIN 59
Query: 147 GQNVVGLKNDSAGHV 161
GQ+VV ++ H+
Sbjct: 60 GQSVVATPHEKIVHI 74
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 41 FVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
+C + G A G+R G +I+++NG++V + ++ +L N
Sbjct: 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 78
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 161 VGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLT 220
+GF + G I L++ A R G+ H I+E+NGQ+VV I E++ +A +++
Sbjct: 22 LGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIK 81
Query: 221 IMPSYVY 227
MP+ Y
Sbjct: 82 TMPAATY 88
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 88 NNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNG 147
+ ++ + RP R +GF + G I L++ A R G+ H I+E+NG
Sbjct: 6 SGVTTAIIHRPHARE---------QLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEING 56
Query: 148 QNVV 151
Q+VV
Sbjct: 57 QSVV 60
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+FV + G PA L G LR GD+IL VNG + + Q A L+ +++IV +
Sbjct: 36 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQY 94
Query: 97 RPFE 100
RP E
Sbjct: 95 RPEE 98
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQY 96
Query: 97 RP-----FERNVTLHKDSAGHV 113
+P FE N + DS+G +
Sbjct: 97 KPEEYSRFEANSRV--DSSGRI 116
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+FV + G PA L G LR GD+IL VNG + + Q A L+ +++IV +
Sbjct: 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQY 97
Query: 97 RPFE 100
RP E
Sbjct: 98 RPEE 101
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+FV + G PA L G L+ GDQIL VNG + G++ Q A L+ ++I+ +
Sbjct: 27 EGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAG-QTVTIIAQY 85
Query: 97 RP 98
+P
Sbjct: 86 QP 87
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQY 93
Query: 97 RPFE 100
+P E
Sbjct: 94 KPEE 97
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 331 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQY 389
Query: 97 RPFE 100
+P E
Sbjct: 390 KPEE 393
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 30 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQY 88
Query: 97 RPFE 100
+P E
Sbjct: 89 KPEE 92
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQY 96
Query: 97 RPFE 100
+P E
Sbjct: 97 KPEE 100
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQV 78
+HG+ G R G F+ V+ GSPA LR GD++++VNG V G HQV
Sbjct: 18 LHGEKGRR------GQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQV 65
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 154 KNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
+ D +GF + G I L++ A R G+ H I+E+NGQ+VV ++I I+ A
Sbjct: 10 RPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 69
Query: 214 PCVINLTIMPS 224
I++ MP+
Sbjct: 70 VGEIHMKTMPA 80
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 112 HVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHV 161
+GF + G I L++ A R G+ H I+E+NGQ+VV ++ H+
Sbjct: 16 QLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHI 65
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 41 FVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
+C + G A G+R G +I+++NG++V + ++ +L N
Sbjct: 25 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 69
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR+ +G + +++EGSPA GL GD++L++NG V QV L+R N++
Sbjct: 19 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 77
Query: 91 SIVVRD 96
+++V D
Sbjct: 78 TLLVLD 83
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 101 RNVTLHKDSAGHVGFQFK-----RGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
R L K + GF + G +IR+++E S A + GLL +L +NG V
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV---- 58
Query: 155 NDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKD 203
D H Q++ LV++S S L+ D E +N V LK+
Sbjct: 59 -DKEEHA-------QVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKE 99
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 168 GQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226
G +IR+++E S A + GLL +L +NG V + ++ E+V K+ + L ++
Sbjct: 27 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 86
Query: 227 YHHMM 231
Y +
Sbjct: 87 YEKAV 91
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus
Pdz Domain-Containing Protein 1
Length = 114
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR+ +G + +++EGSPA GL GD++L++NG V QV L+R N++
Sbjct: 31 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 89
Query: 91 SIVVRD 96
+++V D
Sbjct: 90 TLLVLD 95
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 101 RNVTLHKDSAGHVGFQFK-----RGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
R L K + GF + G +IR+++E S A + GLL +L +NG V
Sbjct: 15 RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV---- 70
Query: 155 NDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKD 203
D H Q++ LV++S S L+ D E +N V LK+
Sbjct: 71 -DKEEH-------AQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKE 111
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 168 GQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226
G +IR+++E S A + GLL +L +NG V + ++ E+V K+ + L ++
Sbjct: 39 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 98
Query: 227 YHHMM 231
Y +
Sbjct: 99 YEKAV 103
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 53 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 82
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 29 IGLRVAAIHE-GVFVCLVQEGSPAALVGLRFGDQILQVN 66
+GLR+A ++ G+FV V E SPAA GL GDQIL+VN
Sbjct: 13 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 51
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell
Leukemia Virus Type I) Binding Protein 3
Length = 139
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 93
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 53 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 82
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 54 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 83
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 43 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 72
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 45 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 74
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG 67
+G++V V EG PA + GL+ GD+I+QVNG
Sbjct: 53 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 82
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR+ +G + +++EGSPA GL GD++L++NG V QV L+R N++
Sbjct: 20 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 78
Query: 91 SIVVRD 96
+++V D
Sbjct: 79 TLLVLD 84
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 101 RNVTLHKDSAGHVGFQFK-----RGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
R L K + GF + G +IR+++E S A + GLL +L +NG V
Sbjct: 4 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV---- 59
Query: 155 NDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
D H Q++ LV++S S L+ D E +N V LK+ +I
Sbjct: 60 -DKEEHA-------QVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDI 103
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 168 GQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226
G +IR+++E S A + GLL +L +NG V + ++ E+V K+ + L ++
Sbjct: 28 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 87
Query: 227 YHHMM 231
Y +
Sbjct: 88 YEKAV 92
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 29 IGLRVAAIHE-GVFVCLVQEGSPAALVGLRFGDQILQVN 66
+GLR+A ++ G+FV V E SPAA GL GDQIL+VN
Sbjct: 21 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 59
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 29 IGLRVAAIHE-GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
+GLR+A ++ G+FV V E SPAA GL GDQIL+VN V +N+ + A+L
Sbjct: 14 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN--NVDFTNIIREEAVL 66
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 13 YHQMTKLFLCKDIHGKIGLRVAAIHEGVF----------VCLVQEGSPAALVGL-RFGDQ 61
+ + T++ LC D GL+ + G+F VC ++ SPA GL + GD+
Sbjct: 13 HTETTEVVLCGDPLSGFGLQ---LQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDR 69
Query: 62 ILQVNGKTVAGSNMHQVHALLRN 84
+L +NG M + + LLR+
Sbjct: 70 VLSINGIATEDGTMEEANQLLRD 92
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 29 IGLRVAAIHE-GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
+GLR+A ++ G+FV V E SPAA GL GDQIL+VN V +N+ + A+L
Sbjct: 16 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN--NVDFTNIIREEAVL 68
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVA 71
G++V LV+ GS A GLR GDQIL+VN K++A
Sbjct: 36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLA 68
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 29 IGLRVAAIHE-GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
+GLR+A ++ G+FV V E SPAA GL GDQIL+VN V +N+ + A+L
Sbjct: 41 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN--NVDFTNIIREEAVL 93
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 19/33 (57%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
FVC V E SPA L GL GD I VNG V G
Sbjct: 39 TFVCRVHESSPAQLAGLTPGDTIASVNGLNVEG 71
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
+ R+ + S A GL I VNG NV G++ +EI +I++ + V+ L + S
Sbjct: 41 VCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYS 95
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G ++ LV+ GSPA GL GD++++VNG+ V QV + +R +N + ++V D
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 97 RPFERNVTLHKDSAGHVGFQF-----KRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 150
R R L K G+ GF K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 1 RMLPRLCCLEKGPNGY-GFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 162 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 198
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 22 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In
Complex With An Elks1b C-Terminal Peptide
Length = 114
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL 82
G F+ V++GS A +VG LR GD++L+ NGK + G+ +V+ ++
Sbjct: 55 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNII 99
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL 82
G F+ V++GS A +VG LR GD++L+ NGK + G+ +V+ ++
Sbjct: 55 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNII 99
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G ++ LV+ GSPA GL GD++++VNG+ V QV + +R +N + ++V D
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 114 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 150
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 22 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 162 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 198
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 22 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 23 KDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNM 75
K G++G V E G+FV V+EGS A GL GD+I +VNG ++ + M
Sbjct: 18 KSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTM 73
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 102 NVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNG 147
+V + K AG +GF + G + ++ + SSA R GL I EVNG
Sbjct: 13 SVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNG 65
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G ++ LV+ GSPA GL GD++++VNG+ V QV + +R +N + ++V D
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 114 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 150
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 22 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 162 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 198
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 22 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G ++ LV+ GSPA GL GD++++VNG+ V QV + +R +N + ++V D
Sbjct: 27 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 83
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 114 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 150
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 21 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 58
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 162 GFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 198
G + K GQ IRLV+ S A + GLL ++EVNG+NV
Sbjct: 21 GEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 58
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84
+C +QE SPA GL+ GD + +NG + G QV L+R+
Sbjct: 50 TLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 168 GQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
GQ IR V S A+R+GL ++EVNGQNV GL+ E+
Sbjct: 29 GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEV 68
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 94 VRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVG 152
+R P LH D + + GQ IR V S A+R+GL ++EVNGQNV G
Sbjct: 10 LRKGPQGYGFNLHSDKS-------RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 62
Query: 153 LK 154
L+
Sbjct: 63 LR 64
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
G ++ V GSPAA GLR D++++VNG+ V G
Sbjct: 29 GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 62
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR +G + ++ GSPA GL+ D ++ VNGK+V + V ++R +
Sbjct: 22 LRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG-GDQT 80
Query: 91 SIVVRDRPFER 101
+++V D+ ER
Sbjct: 81 TLLVLDKELER 91
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 41 FVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFE 100
V V+EGSPA GL+ GD I +NG+ V G +V LL N +SI PFE
Sbjct: 36 IVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSG-NKVSITT--TPFE 92
Query: 101 RNVT 104
T
Sbjct: 93 NTET 96
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR +G + ++ GSPA GL+ D ++ VNGK+V + V ++R +
Sbjct: 23 LRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQT 81
Query: 91 SIVVRDRPFERNVTLHKDSAG 111
+++V D+ E +L S+G
Sbjct: 82 TLLVLDKEAESIYSLSGPSSG 102
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 40 VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVH-ALLRNCPVNNISIVV 94
F+ V++GS A VG LR GD++L+ NG+ + G+ +V+ +L + P + +VV
Sbjct: 67 AFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVV 123
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93
G+F+ V+ GS +A VGL GDQI++VNG + + + +L++ ISIV
Sbjct: 28 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 82
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
G+F+ V+ GS +A VGL GDQI++VNG + + + +L++ ISIV
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVA 97
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAG-SNMHQVHALLRNCPVNNISI 92
V V++GSPA GLR GD I +NG++V G +M V LL++ N IS+
Sbjct: 38 VWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSG--NKISL 87
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
V GSPA VGLR GDQIL VN V ++ V L+ C
Sbjct: 30 VMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC 70
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKT 69
G+++ V GS A GL+ GDQIL+VNG++
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRS 77
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 158 AGHVGFQFKRGQ------IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVE 211
G GF K Q + + + A R G+L D H++EVNG+NV +E+ E V+
Sbjct: 18 GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVK 77
Query: 212 KA 213
K+
Sbjct: 78 KS 79
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 110 AGHVGFQFKRGQ------IIRLVKESSASRNGLLTDHHILEVNGQNV 150
G GF K Q + + + A R G+L D H++EVNG+NV
Sbjct: 18 GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENV 64
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 18/33 (54%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
FV V E SPA L GL GD I VNG V G
Sbjct: 39 TFVARVHESSPAQLAGLTPGDTIASVNGLNVEG 71
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
+ R+ + S A GL I VNG NV G++ +EI +I++ + V+ L +
Sbjct: 41 VARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 18/33 (54%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
FV V E SPA L GL GD I VNG V G
Sbjct: 39 TFVARVHESSPAQLAGLTPGDTIASVNGLNVEG 71
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
+ R+ + S A GL I VNG NV G++ +EI +I++ + V+ L +
Sbjct: 41 VARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 19 LFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQV 78
+ + KD +G GL V+ + VFV V+E A G++ GD+I++VNG V SN +V
Sbjct: 11 VIIQKDDNG-FGLTVSGDNP-VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEV 68
Query: 79 HALLRNCPVNNISIVVRDRP 98
L+++ + +++ V+ RP
Sbjct: 69 VKLIKSG--SYVALTVQGRP 86
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GD+I+ VN + ++ Q A L+N ++IV +
Sbjct: 31 EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAG-QAVTIVAQY 89
Query: 97 RPFE 100
RP E
Sbjct: 90 RPEE 93
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 56 LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSA 110
L+ GD IL++ G V G QV +LRNC + +V RD + +VT S
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSSG 111
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 153 LKNDSAGHVGFQFKRGQ----IIR-LVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEI 206
L ND +G +GF G+ ++R +V A R+G L T HIL++ G NV G+ +++
Sbjct: 21 LINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQV 79
Query: 207 REIV 210
+++
Sbjct: 80 AQVL 83
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
G+F+ + +G A VGL+ GD+I+++NG +++ +V L+R +SI VR
Sbjct: 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVR 165
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 32/188 (17%)
Query: 36 IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTV-AGSNMHQVHALLRNCPVNNISIVV 94
+ G FV V GS +A G++ GD I +NGK + + + + A + ++
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
Query: 95 RDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLK 154
+P E VTL ++ ++I E + +G L D G+ +
Sbjct: 321 NGKPLEVEVTLDTSTS-----SSASAEMITPALEGATLSDGQLKD------GGKGI---- 365
Query: 155 NDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214
+I +VK S A++ GL D I+ VN V + E+R+++ P
Sbjct: 366 --------------KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP 409
Query: 215 CVINLTIM 222
+I L I+
Sbjct: 410 AIIALQIV 417
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 21 LCKDIHGKIGLRVAAIHE----GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNM 75
L KD +G +GL +A + +FV + PAA G +R GD++L++N + + G +
Sbjct: 31 LEKDKNG-LGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSH 89
Query: 76 HQVHALLRNCP 86
A+++ P
Sbjct: 90 QNASAIIKTAP 100
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
V V G PA G R GD I+ V+G V G +++ V LL+ + + +V+
Sbjct: 101 VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVL 155
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 18 KLFLCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGS 73
K+ L KD IG+ + A G+++ V + +PAAL G + GD+I VNG+++ G
Sbjct: 8 KVTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 67
Query: 74 NMHQVHALLR 83
+V +++
Sbjct: 68 TKVEVAKMIQ 77
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
GVFV + +G A G L GDQIL VNG+ V + V ALL+ C + +++ V
Sbjct: 30 GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK-CSLGTVTLEV 85
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
G+F+ + SPA L G L+ GD+IL +NGK V S V L++
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
G+FV V EG A G ++ DQI++V+G ++ G + +LRN N ++ R++
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 100
Query: 98 P 98
P
Sbjct: 101 P 101
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL-RNCPVNNISIVVRDR 97
G++V V GS A GL +GDQ+L+ NG + + Q ++ + C + I+I+ +
Sbjct: 43 GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQC--DTITILAQYN 100
Query: 98 P 98
P
Sbjct: 101 P 101
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
V V G A G+R GD+IL+VNG V G+ QV L+R
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 178 SASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
+A R G+ ILEVNG NV G K++ +++ + LT++
Sbjct: 55 AADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 41 FVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
V V++G PA+ GLR GD I VNG+ V G
Sbjct: 39 MVWHVEDGGPASEAGLRQGDLITHVNGEPVHG 70
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
V V G PA G R GD I+ V+G V G +++ V LL+ + + +V+
Sbjct: 101 VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVL 155
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
V V G A G+R GD+IL+VNG V G+ QV L+R
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 178 SASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
+A R G+ ILEVNG NV G K++ +++ + LT++
Sbjct: 55 AADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
LR +G + ++ GSPA GL+ D ++ VNGK+V + V ++R
Sbjct: 19 LRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIR 71
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
V V G A G+R GD+IL+VNG V G+ QV L+R
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 178 SASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
+A R G+ ILEVNG NV G K++ +++ + LT++
Sbjct: 55 AADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTXPV 333
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTXPV 333
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPV 333
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPV 333
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTXPV 333
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPV 333
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPV 333
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
G FV V S AA G++ GD I +NGK + S+ + A + PV
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPV 333
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
G+++ + GSPAA G L GD+IL+VNG ++ G + L+R
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR 82
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG-KTVAGSNMHQVHALLR 83
+G V V SPA L GL+ GD I Q+N K + + +LLR
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLR 328
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 17 TKLFLCKDIHGK--IGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
+K LC+ G+ G + AI G F+ VQ+G PA L GL D I++VNG V
Sbjct: 2 SKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLD 61
Query: 73 SNMHQV 78
+V
Sbjct: 62 EPYEKV 67
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG-KTVAGSNMHQVHALLR 83
+G V V SPA L GL+ GD I Q+N K + + +LLR
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLR 328
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 9 EDMKYHQMT--KLFLCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALVG-LRFGDQI 62
E++ + M K+ L KD IG+ + A +++ V + +PAAL G + GD+I
Sbjct: 16 ENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEI 75
Query: 63 LQVNGKTVAGSNMHQVHALLR 83
VNG+++ G +V +++
Sbjct: 76 TGVNGRSIKGKTKVEVAKMIQ 96
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFER 101
V V+EG PA GL GD I VNG+ V G +V L+ + + V PFE
Sbjct: 41 VWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILK---SGNKVAVTTTPFEN 97
Query: 102 NVTL 105
+L
Sbjct: 98 TQSL 101
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG-KTVAGSNMHQVHALLR 83
+G V V SPA L GL+ GD I Q+N K + + +LLR
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLR 328
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNG-KTVAGSNMHQVHALLR 83
+G V V SPA L GL+ GD I Q+N K + + +LLR
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLR 328
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
G F+ V SPA GLR D+I++VNG + G V + +R
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVN 66
EG+F+ + G PA L G LR GD+I+ VN
Sbjct: 28 EGIFISFILAGGPADLSGELRKGDRIISVN 57
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 21 LCKDIHGK--IGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMH 76
LC+ G+ G + AI G F+ VQ+G PA L GL D I++VNG V
Sbjct: 6 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYE 65
Query: 77 QV 78
+V
Sbjct: 66 KV 67
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L IHE + +EG+ A L GDQIL+VNG + S+ + LR P
Sbjct: 42 LNAIVIHE-----VYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96
Query: 91 SIVVRDRPFERN 102
+V RD R+
Sbjct: 97 LVVYRDEAHYRD 108
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 55 GLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
GL+ GDQ+L VNG +V G + LL+ ++ +VVR P
Sbjct: 48 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 21 LCKDIHGKIGLRVAAIHE------GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGS 73
L K G +G V + G+FV +QEGS A G L+ DQIL +NG+ + +
Sbjct: 26 LLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQT 85
Query: 74 NMHQ 77
HQ
Sbjct: 86 ITHQ 89
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 11 MKYHQMTKLFLCKDIHGKIGLRVA-AIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKT 69
M+Y Q+T GK G V V V G PA GL+ D +LQ+N +
Sbjct: 2 MRYRQITIP------RGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERP 55
Query: 70 VAGSNMHQVHALLRNCPVNNISIVVR 95
V ++ +R+CP I +V R
Sbjct: 56 VEHWKCVELAHEIRSCPSEIILLVWR 81
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
G F+ V SPA GLR D+I++VNG + G V + +R
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 21 LCKDIHGK--IGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTV 70
LC+ G+ G + AI G F+ VQ+G PA L GL D I++VNG V
Sbjct: 10 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 63
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88
G+FV V EG A G ++ DQI++V+G ++ G + +LRN N
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN 162
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 18 KLFLCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGS 73
K+ L KD IG+ + A +++ V + +PAAL G + GD+I VNG+++ G
Sbjct: 22 KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 81
Query: 74 NMHQVHALLR 83
+V +++
Sbjct: 82 TKVEVAKMIQ 91
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
G F+ V SPA GLR D+I++VNG + G V + +R + ++V DR
Sbjct: 29 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIR-AGGDETKLLVVDRE 87
Query: 99 FERNV 103
E ++
Sbjct: 88 TETSL 92
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 8 LEDMKYHQMTKLFLCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQIL 63
+E++ + + K+ L K+ H +G+ + E + + + G PA G L GD IL
Sbjct: 20 MENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAIL 79
Query: 64 QVNG 67
VNG
Sbjct: 80 AVNG 83
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
G F+ V SPA GLR D+I++VNG + G V + +R
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim),
Ms0793 From Homo Sapiens
Length = 90
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 29 IGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVN 66
G + G+FV V+ GSPA L+ D+I+ +N
Sbjct: 19 FGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAIN 56
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 41 FVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89
+ ++ SPA G L+ GD+++ +NG S + + LLR+ + +
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 88
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 40 VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHAL 81
++V + E PA G +R GD+IL++NG+T NM A+
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETT--KNMKHSRAI 91
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 32 RVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
R G+F+ + G A G LR DQ++ VNG+T+ G + H+ LR
Sbjct: 49 RETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 36 IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87
+ G++V V SP+ G++ GD I++VNG+ + S+ Q A+L P+
Sbjct: 33 VSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQ-EAVLTESPL 83
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
G+FV V EG A G ++ D +++V+G ++ G ++LRN ++ R+R
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRER 95
Query: 98 PFERN 102
P E++
Sbjct: 96 PGEQS 100
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
G+++ + S AA G +R GD+I+Q+NG V N + ALL + N S+++ R
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEV--QNREEAVALLTSEENKNFSLLIA-R 105
Query: 98 P 98
P
Sbjct: 106 P 106
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 21 LCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
L I G +G R +G+FV VQ PA+ + L+ GD+I+Q NG + Q
Sbjct: 5 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 63
Query: 78 VHALLRNCPVNNISIVVRD 96
+LL+ I+VR+
Sbjct: 64 AVSLLKTFQNTVELIIVRE 82
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 21 LCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
L I G +G R +G+FV VQ PA+ + L+ GD+I+Q NG + Q
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 62
Query: 78 VHALLRNCPVNNISIVVRD 96
+LL+ I+VR+
Sbjct: 63 AVSLLKTFQNTVELIIVRE 81
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 18 KLFLCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGS 73
K+ L KD IG+ + A +++ V + +PAAL G + GD+I VNG+++ G
Sbjct: 5 KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 64
Query: 74 NMHQVHALLR 83
+V +++
Sbjct: 65 TKVEVAKMIQ 74
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+G+FV VQ PA+ + L+ GD+I+Q NG + Q +LL+ I+VR+
Sbjct: 43 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 56 LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISIVV 94
L+ GD++++VNG +AG + +V +LLR+ + +S++V
Sbjct: 52 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 91
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 41 FVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89
+ ++ SPA G L+ GD+++ +NG S + + LLR+ + +
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 88
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G++V ++E AAL G L+ GD+IL VNG+ + L RN
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 87
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G++V ++E AAL G L+ GD+IL VNG+ + L RN
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 85
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse
Glutamate Receptor Interacting Protein 1a-L (Grip1)
Homolog
Length = 122
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 41 FVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89
+ ++ SPA G L+ GD+++ +NG S + + LLR+ + +
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 97
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88
G+FV V EG A G ++ DQI++V+G ++ G + +LRN N
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN 86
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84
V EG A GLR GD +++VNG+ V QV ++R
Sbjct: 52 VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 91
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
V G PA GL+ D +LQ+N + V ++ +R+CP I +V R
Sbjct: 43 VDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 93
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 21 LCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
L I G +G R +G+FV VQ PA+ + L+ GD+I+Q NG + Q
Sbjct: 15 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 73
Query: 78 VHALLRNCPVNNISIVVRD 96
+LL+ I+VR+
Sbjct: 74 AVSLLKTFQNTVELIIVRE 92
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84
V EG A GLR GD +++VNG+ V QV ++R
Sbjct: 52 VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 91
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 56 LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISIVV 94
L+ GD++++VNG +AG + +V +LLR+ + +S++V
Sbjct: 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 59 GDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFE-RNVTLHKDS 109
GD+ILQ+ G + G + +++ P ++IV+R + + + T DS
Sbjct: 79 GDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGDS 130
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84
V EG A GLR GD +++VNG+ V QV ++R
Sbjct: 72 VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 111
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 12 KYHQMTKLFLCKDIHGKIGLRVAA---IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGK 68
+Y + L L I ++ LR + + GV + V GSPA GLR GD IL + +
Sbjct: 227 RYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQ 286
Query: 69 TVAGSNMHQVHALLRN 84
V N V+ +R
Sbjct: 287 MV--QNAEDVYEAVRT 300
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 28 KIGLRVAAIHEGVFV-CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
K G+ + H G++V ++ +G+ + + GD++L VNG ++ G+ Q LRN
Sbjct: 32 KGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 90
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G++V ++E AAL G L+ GD+IL VNG+ + L RN
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 23 KDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVGLRF--GDQILQVNGKTVAGSNMHQ 77
D +G+ G V ++ V V V G+PA L R GDQ++ +NG+ +A Q
Sbjct: 25 PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ 84
Query: 78 V 78
V
Sbjct: 85 V 85
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 23 KDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVGLRF--GDQILQVNGKTVAGSNMHQ 77
D +G+ G V ++ V V V G+PA L R GDQ++ +NG+ +A Q
Sbjct: 23 PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ 82
Query: 78 V 78
V
Sbjct: 83 V 83
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 24 DIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVGLRF--GDQILQVNGKTVAGSNMHQV 78
D +G+ G V ++ V V V G+PA L R GDQ++ +NG+ +A QV
Sbjct: 13 DENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQV 72
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
++I V + + G PAA G L GDQI+ +NG ++ G + +++
Sbjct: 212 SSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 262
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 37 HEGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALL 82
G+F+ + G A GL D++++VNG VAG + QV ++
Sbjct: 65 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQV 78
EG+FV + + PAA G L+ D+I++VNG+ ++ + Q
Sbjct: 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQA 82
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of
Pdz Domain And Ligand Resonances
Length = 105
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN 74
G ++ V +PA GL+ D I+ +NG++V +N
Sbjct: 36 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 71
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 28 KIGLRVAAIHEGVFV-CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
K G+ + H G++V ++ +G+ + + GD++L VNG ++ G+ Q LRN
Sbjct: 27 KGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 85
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 36 IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTV-AGSNMHQVHALLRNCPVNNISIVV 94
+ G FV V GS +A G++ GD I +NGK + + + + A + ++
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
Query: 95 RDRPFERNVTLHKDSA 110
+P E VTL ++
Sbjct: 321 NGKPLEVEVTLDTSTS 336
>pdb|2KJK|A Chain A, Solution Structure Of The Second Domain Of The Listeria
Protein Lin2157, Northeast Structural Genomics
Consortium Target Lkr136b
Length = 100
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 33 VAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGS 73
V ++GV+V V+E PAA + L GD I +++G++ S
Sbjct: 2 VKVTYDGVYVLSVKEDVPAAGI-LHAGDLITEIDGQSFKSS 41
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 12 KYHQMTKLFLCKDIHGKIGLRVAA---IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGK 68
+Y + L L I ++ LR + + GV + V GSPA GLR GD IL + +
Sbjct: 6 RYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQ 65
Query: 69 TVAGSNMHQVHALLRN 84
V N V+ +R
Sbjct: 66 MV--QNAEDVYEAVRT 79
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 39 GVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALL 82
G+F+ + G A GL D++L+VNG V+G ++ QV ++
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM 110
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 37 HEGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALL 82
G+F+ + G A GL D++++VNG VAG + QV ++
Sbjct: 65 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 40 VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
V + V+ G PA G ++ GD++L V+G + G+ + ++L+ C
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC 183
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 37 HEGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALL 82
G+F+ + G A GL D++++VNG VAG + QV ++
Sbjct: 37 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 83
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 30 GLRVAAIHEG----VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G ++++ E ++V V+E A+ GL+ GD+IL++N + N + L
Sbjct: 23 GFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP 82
Query: 86 PVNNISIVVRDRP 98
++ ++VR P
Sbjct: 83 ---SLGLLVRTYP 92
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 30 GLRVAAIHEGVFV-CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G+ + H G++V ++ +G+ + + GD++L VNG ++ G+ Q LRN
Sbjct: 25 GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 37 HEGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALL 82
G+F+ + G A GL D++++VNG VAG + QV ++
Sbjct: 39 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 85
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 30 GLRVAAIHEGVFV-CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G+ + H G++V ++ +G+ + + GD++L VNG ++ G+ Q LRN
Sbjct: 25 GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 23 KDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
KD HG G V+ V V V+ G A G++ GD+I++VNG V S+ +V L+
Sbjct: 16 KDQHG-FGFTVSG-DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLI 73
Query: 83 RN 84
++
Sbjct: 74 KS 75
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 30 GLRVAAIHEGVFV-CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G+ + H G++V ++ +G+ + + GD++L VNG ++ G+ Q LRN
Sbjct: 32 GVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 88
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN 74
G ++ V +PA GL+ D I+ +NG++V +N
Sbjct: 49 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 84
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 40 VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
V + V+ G PA G ++ GD++L V+G + G+ + ++L+ C
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC 80
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 148 QNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
QN +GL +A G Q K G ++ +VK +A +G L +L V+G+++VGL +
Sbjct: 20 QNGMGLSIVAAKGAG-QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 78
Query: 206 IREIVEKAPCVINLTI 221
E++ + V+ L +
Sbjct: 79 AAELMTRTSSVVTLEV 94
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL-RNCPVNNISI 92
G++V V +G A + G L GDQ+L V+G+++ G + + L+ R V + +
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 169 QIIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
+I R++ S A R L IL VNGQ+++ + +I ++++ A + L I+P
Sbjct: 46 KIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN 74
G ++ V +PA GL+ D I+ +NG++V +N
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 290
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 30 GLRVAAIHEGVFV-CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G+ + H G++V ++ +G+ + + GD++L VNG ++ G+ Q LRN
Sbjct: 24 GVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 80
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN 74
G ++ V +PA GL+ D I+ +NG++V +N
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 290
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
G+FV + G A+ G LR DQ++ VNG+++ G + LR
Sbjct: 40 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 85
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
G+FV + G A+ G LR DQ++ VNG+++ G + LR
Sbjct: 37 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 82
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
G F+ V G PA G++ GD+++ V G++V G
Sbjct: 31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 56 LRFGDQILQVNGKTVAGSNMHQVHALLRNCPV-NNISIVV 94
L+ GD++++VNG + G + +V +LLR+ + +S++V
Sbjct: 77 LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 148 QNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
QN +GL +A G Q K G ++ +VK +A +G L +L V+G+++VGL +
Sbjct: 14 QNGMGLSIVAAKGAG-QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 72
Query: 206 IREIVEKAPCVINLTI 221
E++ + V+ L +
Sbjct: 73 AAELMTRTSSVVTLEV 88
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL-RNCPVNNISI 92
G++V V +G A + G L GDQ+L V+G+++ G + + L+ R V + +
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 88
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 170 IIRLVKESSASRNGLLTD-HHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
I R+VK +A ++GLL + +LE+NG + G E+ +++ + ++PS
Sbjct: 52 ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 15 QMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGS 73
++ ++ +DI +G V + V + + +G A GL GD++L++NG + G
Sbjct: 27 KIVRIEKARDI--PLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGK 84
Query: 74 NMHQVHALLRN 84
++++V LL +
Sbjct: 85 DVNEVFDLLSD 95
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 148 QNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
QN +GL +A G Q K G ++ +VK +A +G L +L V+G+++VGL +
Sbjct: 20 QNGMGLSIVAAKGAG-QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 78
Query: 206 IREIVEKAPCVINLTI 221
E++ + V+ L +
Sbjct: 79 AAELMTRTSSVVTLEV 94
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL-RNCPVNNISI 92
G++V V +G A + G L GDQ+L V+G+++ G + + L+ R V + +
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 30 GLRVAAIHEG----VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G ++++ E ++V V+E A+ GL+ GD+IL++N + N + L
Sbjct: 32 GFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP 91
Query: 86 PVNNISIVVRDRP 98
++ ++VR P
Sbjct: 92 ---SLGLLVRTYP 101
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 148 QNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
QN +GL +A G Q K G ++ +VK +A +G L +L V+G+++VGL +
Sbjct: 14 QNGMGLSIVAAKGAG-QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 72
Query: 206 IREIVEKAPCVINLTI 221
E++ + V+ L +
Sbjct: 73 AAELMTRTSSVVTLEV 88
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL-RNCPVNNISI 92
G++V V +G A + G L GDQ+L V+G+++ G + + L+ R V + +
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 88
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 46 QEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
QEG+ ++ G+++L +NGK++ G+ H A+LR
Sbjct: 57 QEGT------IQKGNEVLSINGKSLKGTTHHDALAILRQA 90
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 38 EGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
+G+F+ V E SPA L+ GD+IL+V+G + ++ + ++N
Sbjct: 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 34 AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
+I V + + G PA G L GDQI+ +NG ++ G + ++++
Sbjct: 25 GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 75
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHM 230
G+L +HH + ++G+ +V + D+ + +A V T+MP ++ H+
Sbjct: 19 GVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHV 66
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHM 230
G+L +HH + ++G+ +V + D+ + +A V T+MP ++ H+
Sbjct: 19 GVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHV 66
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 34 AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
+I V + + G PA G L GDQI+ +NG ++ G + ++++
Sbjct: 29 GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 79
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNG 67
G+FV + EG A G L+ GD++L +NG
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSING 68
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 109 SAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG 168
S+GH F R +I R K+ + S NGL I V G+ + G +G +G
Sbjct: 5 SSGHYIFPHARIKITRDSKDHTVSGNGL----GIRIVGGKEIPG----HSGEIGA----- 51
Query: 169 QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK 212
I +++ SA + G L+ +LE NG + +E++ I+ +
Sbjct: 52 YIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ 96
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 16 MTKLFLCKDIHGKIGLRVAAIHEGVFVC---LVQEGSPAALVGLRFGDQILQVNGKTVAG 72
+ K+ K G +GL + I G ++ L+ +G+ A+ L+ GD ++ V V G
Sbjct: 25 LNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLG 84
Query: 73 SNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVG 114
+ + LL+N + + + R F +DS G
Sbjct: 85 YTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 16 MTKLFLCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQILQVNG 67
+ K+ L K+ H +G+ + E + + + G PA G L GD IL VNG
Sbjct: 3 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNG 58
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 16 MTKLFLCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQILQVNG 67
+ K+ L K+ H +G+ + E + + + G PA G L GD IL VNG
Sbjct: 10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,829,310
Number of Sequences: 62578
Number of extensions: 267085
Number of successful extensions: 901
Number of sequences better than 100.0: 194
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 309
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)