Query psy2263
Match_columns 232
No_of_seqs 145 out of 1978
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 20:15:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.9 3.6E-25 7.7E-30 191.5 21.8 214 10-224 644-982 (984)
2 KOG3209|consensus 99.9 5.7E-21 1.2E-25 165.7 21.8 83 13-96 342-431 (984)
3 KOG3580|consensus 99.9 1.1E-21 2.4E-26 167.7 14.2 86 9-96 2-96 (1027)
4 TIGR02037 degP_htrA_DO peripla 99.8 2.7E-19 5.9E-24 155.4 16.7 178 23-228 230-424 (428)
5 PRK10139 serine endoprotease; 99.8 1.1E-18 2.3E-23 151.9 18.5 174 22-227 262-449 (455)
6 PRK10942 serine endoprotease; 99.8 2.1E-18 4.5E-23 150.7 19.2 171 22-227 283-467 (473)
7 PRK10779 zinc metallopeptidase 99.7 5E-17 1.1E-21 141.8 14.5 150 40-226 128-280 (449)
8 KOG3605|consensus 99.7 7.2E-18 1.6E-22 145.4 8.7 171 12-230 642-820 (829)
9 TIGR00054 RIP metalloprotease 99.7 1.7E-15 3.8E-20 130.9 14.2 134 38-227 128-263 (420)
10 PF13180 PDZ_2: PDZ domain; PD 99.5 1.4E-13 3.1E-18 92.2 10.0 78 27-106 1-81 (82)
11 PF00595 PDZ: PDZ domain (Also 99.5 3.2E-13 6.9E-18 90.3 11.0 77 18-95 1-81 (81)
12 PF00595 PDZ: PDZ domain (Also 99.4 2E-12 4.3E-17 86.4 8.2 66 157-222 8-81 (81)
13 cd00988 PDZ_CTP_protease PDZ d 99.4 8.7E-12 1.9E-16 84.0 10.9 81 27-107 2-83 (85)
14 cd00136 PDZ PDZ domain, also c 99.3 1.4E-11 2.9E-16 79.9 9.8 68 27-94 1-69 (70)
15 cd00992 PDZ_signaling PDZ doma 99.2 2E-10 4.3E-15 76.7 11.4 77 17-94 2-81 (82)
16 cd00989 PDZ_metalloprotease PD 99.2 9.3E-11 2E-15 77.8 9.6 76 28-105 2-77 (79)
17 smart00228 PDZ Domain present 99.2 4.6E-10 1E-14 75.2 11.9 79 17-97 3-84 (85)
18 cd00990 PDZ_glycyl_aminopeptid 99.2 3.4E-10 7.5E-15 75.2 9.3 75 28-106 2-76 (80)
19 KOG1421|consensus 99.1 5.9E-10 1.3E-14 97.9 12.2 150 40-220 305-454 (955)
20 cd00991 PDZ_archaeal_metallopr 99.1 6.4E-10 1.4E-14 73.9 9.3 69 36-106 8-77 (79)
21 PF13180 PDZ_2: PDZ domain; PD 99.1 3E-10 6.5E-15 76.0 7.4 58 168-227 15-75 (82)
22 cd00136 PDZ PDZ domain, also c 99.1 8.7E-10 1.9E-14 71.3 8.9 62 160-221 2-69 (70)
23 cd00992 PDZ_signaling PDZ doma 99.1 1.5E-09 3.3E-14 72.4 9.1 64 158-221 11-81 (82)
24 cd00987 PDZ_serine_protease PD 99.0 2.8E-09 6.1E-14 72.3 10.0 64 38-103 24-88 (90)
25 KOG3580|consensus 99.0 9.1E-10 2E-14 95.4 8.7 67 161-227 213-281 (1027)
26 TIGR03279 cyano_FeS_chp putati 99.0 9E-09 2E-13 87.9 12.5 140 42-222 2-147 (433)
27 smart00228 PDZ Domain present 99.0 7.2E-09 1.6E-13 69.4 9.2 66 159-224 12-84 (85)
28 PLN00049 carboxyl-terminal pro 98.9 7.9E-09 1.7E-13 88.8 11.1 84 24-107 82-171 (389)
29 KOG3550|consensus 98.9 3.2E-09 6.9E-14 76.6 7.2 68 156-223 98-173 (207)
30 cd00986 PDZ_LON_protease PDZ d 98.9 1.1E-08 2.4E-13 67.8 9.3 67 37-106 7-74 (79)
31 TIGR00225 prc C-terminal pepti 98.9 6.7E-09 1.4E-13 87.7 10.2 77 25-101 49-125 (334)
32 cd00988 PDZ_CTP_protease PDZ d 98.9 7.2E-09 1.6E-13 69.6 8.4 65 160-224 3-72 (85)
33 cd00991 PDZ_archaeal_metallopr 98.9 6.4E-09 1.4E-13 69.0 7.3 58 167-226 10-70 (79)
34 cd00987 PDZ_serine_protease PD 98.9 3.1E-09 6.6E-14 72.2 5.7 60 167-228 24-86 (90)
35 COG0793 Prc Periplasmic protea 98.9 1.2E-08 2.5E-13 87.9 10.3 87 22-108 95-184 (406)
36 PRK10898 serine endoprotease; 98.9 1.9E-08 4.1E-13 85.4 11.0 84 22-107 251-347 (353)
37 TIGR02038 protease_degS peripl 98.8 2.2E-08 4.8E-13 84.9 10.2 83 23-107 251-346 (351)
38 TIGR02860 spore_IV_B stage IV 98.8 6.2E-08 1.4E-12 82.3 11.1 89 27-119 96-197 (402)
39 PF04495 GRASP55_65: GRASP55/6 98.8 2.5E-07 5.5E-12 67.6 12.8 110 10-121 5-131 (138)
40 cd00989 PDZ_metalloprotease PD 98.8 4E-08 8.6E-13 65.0 7.7 55 170-226 16-71 (79)
41 KOG3553|consensus 98.8 8.8E-09 1.9E-13 69.0 4.0 58 167-225 59-117 (124)
42 TIGR01713 typeII_sec_gspC gene 98.8 6.4E-08 1.4E-12 78.4 9.8 78 26-105 176-257 (259)
43 KOG3550|consensus 98.8 4E-08 8.6E-13 71.0 7.5 82 15-98 90-175 (207)
44 cd00990 PDZ_glycyl_aminopeptid 98.7 4.9E-08 1.1E-12 64.7 6.7 63 161-226 3-69 (80)
45 TIGR00054 RIP metalloprotease 98.7 8.5E-08 1.8E-12 83.3 9.7 70 38-109 203-272 (420)
46 KOG3551|consensus 98.7 1.8E-08 3.9E-13 83.3 5.0 67 156-222 93-167 (506)
47 PRK11186 carboxy-terminal prot 98.7 1.3E-07 2.8E-12 85.7 10.0 85 23-107 240-333 (667)
48 PRK10779 zinc metallopeptidase 98.7 1.4E-07 3E-12 82.7 9.4 78 29-108 212-289 (449)
49 cd00986 PDZ_LON_protease PDZ d 98.7 1.3E-07 2.8E-12 62.6 7.1 56 168-226 9-67 (79)
50 KOG3553|consensus 98.6 7.5E-08 1.6E-12 64.6 4.4 66 29-96 37-115 (124)
51 PF14685 Tricorn_PDZ: Tricorn 98.6 8.7E-07 1.9E-11 59.5 9.3 76 27-104 1-87 (88)
52 TIGR02037 degP_htrA_DO peripla 98.6 4E-07 8.8E-12 79.4 10.0 76 27-104 338-427 (428)
53 KOG3551|consensus 98.6 1.6E-07 3.4E-12 77.8 6.8 78 17-95 86-167 (506)
54 PRK10139 serine endoprotease; 98.6 1.2E-07 2.6E-12 83.1 6.2 79 147-227 270-351 (455)
55 KOG3549|consensus 98.5 1.9E-07 4E-12 76.4 6.4 71 152-222 59-137 (505)
56 PRK10942 serine endoprotease; 98.5 9.3E-07 2E-11 77.9 9.8 65 38-105 408-472 (473)
57 TIGR02038 protease_degS peripl 98.5 3.5E-07 7.5E-12 77.7 6.5 65 161-227 272-339 (351)
58 KOG3606|consensus 98.4 7.3E-07 1.6E-11 70.6 7.0 82 16-98 159-254 (358)
59 PF12812 PDZ_1: PDZ-like domai 98.4 3.3E-07 7.1E-12 60.3 4.3 74 139-215 4-77 (78)
60 KOG3549|consensus 98.4 1E-06 2.3E-11 72.1 7.4 81 15-96 54-138 (505)
61 KOG0609|consensus 98.4 2.7E-06 6E-11 73.6 9.9 83 14-97 121-205 (542)
62 TIGR00225 prc C-terminal pepti 98.4 1.4E-06 3.1E-11 73.5 8.1 58 168-225 63-122 (334)
63 PRK10898 serine endoprotease; 98.4 9.9E-07 2.1E-11 74.9 6.8 59 167-227 279-340 (353)
64 TIGR01713 typeII_sec_gspC gene 98.4 1.2E-06 2.6E-11 71.1 6.7 59 167-227 191-252 (259)
65 KOG3651|consensus 98.3 2.9E-06 6.3E-11 68.4 8.4 79 17-96 6-88 (429)
66 PLN00049 carboxyl-terminal pro 98.3 2.6E-06 5.7E-11 73.3 8.7 58 168-225 103-162 (389)
67 KOG3606|consensus 98.3 3.3E-06 7.1E-11 67.0 8.3 63 165-227 192-256 (358)
68 KOG3834|consensus 98.3 8.8E-06 1.9E-10 68.6 10.9 143 37-221 14-164 (462)
69 KOG1892|consensus 98.3 3E-06 6.5E-11 77.5 8.3 81 14-97 932-1019(1629)
70 KOG3552|consensus 98.3 1.2E-06 2.6E-11 79.8 5.7 68 156-224 62-132 (1298)
71 KOG3129|consensus 98.2 1.2E-05 2.5E-10 61.6 8.7 71 38-108 139-210 (231)
72 KOG1892|consensus 98.2 2.7E-06 5.8E-11 77.8 6.0 69 159-227 943-1023(1629)
73 KOG3571|consensus 98.2 5.9E-06 1.3E-10 70.9 7.1 82 15-96 249-338 (626)
74 COG0793 Prc Periplasmic protea 98.2 4.8E-06 1E-10 71.9 6.8 55 170-224 116-171 (406)
75 KOG3651|consensus 98.1 1.1E-05 2.3E-10 65.1 7.3 66 157-222 14-87 (429)
76 KOG3552|consensus 98.1 5.9E-06 1.3E-10 75.4 5.6 87 5-96 45-131 (1298)
77 COG0265 DegQ Trypsin-like seri 98.1 3E-05 6.5E-10 65.9 9.5 84 23-108 245-339 (347)
78 COG3975 Predicted protease wit 98.0 2.7E-05 5.9E-10 67.6 8.0 75 25-108 449-523 (558)
79 KOG3571|consensus 98.0 1.5E-05 3.2E-10 68.5 5.9 66 158-223 260-338 (626)
80 KOG3542|consensus 97.9 2E-05 4.3E-10 70.1 6.4 83 12-96 532-618 (1283)
81 PRK11186 carboxy-terminal prot 97.9 2.8E-05 6E-10 70.8 7.5 54 170-223 259-319 (667)
82 KOG1421|consensus 97.9 8.6E-05 1.9E-09 66.2 9.8 139 39-219 772-912 (955)
83 TIGR03279 cyano_FeS_chp putati 97.9 1.9E-05 4.2E-10 67.8 5.5 47 172-222 4-50 (433)
84 PF14685 Tricorn_PDZ: Tricorn 97.8 0.00011 2.5E-09 49.2 7.3 48 177-226 31-81 (88)
85 TIGR02860 spore_IV_B stage IV 97.8 4.4E-05 9.6E-10 65.2 6.2 50 176-227 123-173 (402)
86 PF04495 GRASP55_65: GRASP55/6 97.8 8.3E-05 1.8E-09 54.4 6.8 63 158-222 25-99 (138)
87 PRK09681 putative type II secr 97.8 0.00025 5.5E-09 57.6 9.3 61 44-106 210-274 (276)
88 KOG1320|consensus 97.7 0.00014 3.1E-09 63.1 8.4 153 38-224 287-456 (473)
89 KOG3938|consensus 97.7 7.3E-05 1.6E-09 59.4 5.9 80 14-94 125-207 (334)
90 COG0265 DegQ Trypsin-like seri 97.5 0.00033 7.1E-09 59.5 7.6 64 161-226 264-330 (347)
91 KOG4371|consensus 97.5 0.0004 8.8E-09 64.6 8.2 169 20-225 1152-1330(1332)
92 COG3480 SdrC Predicted secrete 97.5 0.00084 1.8E-08 55.0 8.8 78 38-118 130-214 (342)
93 KOG3542|consensus 97.4 0.00013 2.9E-09 65.0 3.7 56 158-213 547-609 (1283)
94 PRK09681 putative type II secr 97.4 0.00061 1.3E-08 55.4 6.7 55 173-229 211-270 (276)
95 KOG0609|consensus 97.3 0.00085 1.8E-08 58.5 7.6 75 152-226 127-207 (542)
96 KOG3605|consensus 97.1 0.00079 1.7E-08 59.9 4.7 67 17-87 738-805 (829)
97 KOG1320|consensus 97.1 0.0025 5.4E-08 55.6 7.6 68 38-107 398-466 (473)
98 KOG3129|consensus 97.0 0.0019 4E-08 49.8 6.0 57 170-226 142-201 (231)
99 KOG0606|consensus 97.0 0.0013 2.9E-08 61.9 5.7 56 170-225 661-717 (1205)
100 COG3975 Predicted protease wit 97.0 0.0018 3.9E-08 56.6 5.9 38 159-196 451-492 (558)
101 COG3031 PulC Type II secretory 96.9 0.0032 7E-08 49.5 6.4 62 42-105 211-273 (275)
102 KOG3532|consensus 96.9 0.004 8.7E-08 55.9 7.5 72 21-94 380-452 (1051)
103 KOG3532|consensus 96.7 0.0045 9.6E-08 55.6 6.5 67 157-225 384-455 (1051)
104 KOG3834|consensus 96.6 0.019 4.1E-07 49.0 9.5 109 10-121 72-197 (462)
105 KOG0606|consensus 96.6 0.0075 1.6E-07 57.1 7.3 75 19-95 630-714 (1205)
106 COG3031 PulC Type II secretory 96.6 0.0044 9.6E-08 48.8 4.9 54 174-229 215-270 (275)
107 KOG3938|consensus 96.6 0.0076 1.7E-07 48.2 6.2 58 170-227 152-214 (334)
108 PF12812 PDZ_1: PDZ-like domai 96.3 0.018 3.9E-07 37.8 6.1 47 38-86 30-76 (78)
109 KOG1738|consensus 95.1 0.047 1E-06 48.9 5.5 63 24-86 210-274 (638)
110 KOG1738|consensus 95.0 0.034 7.3E-07 49.7 4.4 67 160-226 214-286 (638)
111 COG3480 SdrC Predicted secrete 94.5 0.14 3E-06 42.3 6.5 54 169-225 133-188 (342)
112 KOG4407|consensus 94.5 0.024 5.3E-07 54.5 2.3 98 127-226 105-203 (1973)
113 COG0750 Predicted membrane-ass 94.3 0.17 3.7E-06 43.4 7.1 58 41-100 132-193 (375)
114 COG0750 Predicted membrane-ass 91.6 0.43 9.2E-06 40.9 5.6 50 172-223 135-188 (375)
115 PF11874 DUF3394: Domain of un 91.5 0.46 9.9E-06 36.4 5.0 39 28-66 112-150 (183)
116 KOG2921|consensus 89.6 0.5 1.1E-05 40.3 4.0 42 169-212 222-265 (484)
117 PF11874 DUF3394: Domain of un 89.1 8 0.00017 29.7 9.9 25 170-194 125-150 (183)
118 KOG4371|consensus 88.1 0.64 1.4E-05 44.4 4.0 80 16-96 1246-1328(1332)
119 KOG4407|consensus 87.0 0.37 8.1E-06 46.9 1.9 57 38-95 143-199 (1973)
120 KOG2921|consensus 81.3 1.9 4E-05 37.0 3.4 47 36-84 218-265 (484)
121 COG5233 GRH1 Peripheral Golgi 55.9 7.6 0.00017 32.4 1.7 29 170-198 67-95 (417)
122 COG5233 GRH1 Peripheral Golgi 46.0 13 0.00029 31.1 1.6 42 29-70 54-95 (417)
123 KOG0792|consensus 44.8 12 0.00027 36.3 1.5 40 175-214 757-798 (1144)
124 COG4100 Cystathionine beta-lya 38.5 20 0.00043 30.1 1.6 27 180-208 99-126 (416)
125 TIGR01744 XPRTase xanthine pho 35.1 62 0.0014 25.0 3.8 33 184-216 114-146 (191)
126 PRK13810 orotate phosphoribosy 34.0 1E+02 0.0023 23.7 4.9 33 184-216 119-151 (187)
127 PRK09219 xanthine phosphoribos 33.3 64 0.0014 24.9 3.6 33 184-216 114-146 (189)
128 PF01455 HupF_HypC: HupF/HypC 31.9 50 0.0011 20.9 2.4 28 184-211 38-65 (68)
129 PF06838 Met_gamma_lyase: Meth 31.2 27 0.00058 30.1 1.3 20 182-201 90-110 (403)
130 PTZ00173 60S ribosomal protein 26.0 1.3E+02 0.0028 23.8 4.1 42 183-227 128-173 (213)
131 COG3127 Predicted ABC-type tra 25.7 71 0.0015 30.2 3.1 58 141-199 543-627 (829)
132 COG0461 PyrE Orotate phosphori 25.7 1.3E+02 0.0029 23.5 4.2 35 183-217 108-142 (201)
133 KOG0792|consensus 24.7 43 0.00092 32.8 1.5 65 20-84 709-796 (1144)
134 KOG4060|consensus 24.3 2.4E+02 0.0051 21.0 4.9 57 38-96 94-152 (176)
135 PRK13669 hypothetical protein; 24.2 98 0.0021 20.2 2.7 32 181-212 39-70 (78)
136 COG1625 Fe-S oxidoreductase, r 24.1 65 0.0014 28.1 2.4 32 170-201 5-37 (414)
137 PF04312 DUF460: Protein of un 23.7 1.6E+02 0.0034 21.6 3.9 46 169-221 33-83 (138)
138 COG1625 Fe-S oxidoreductase, r 23.3 66 0.0014 28.1 2.3 35 41-75 4-39 (414)
139 PRK03760 hypothetical protein; 22.6 62 0.0014 22.9 1.7 19 173-191 95-113 (117)
140 PRK12560 adenine phosphoribosy 21.7 2.2E+02 0.0049 21.8 4.8 34 183-216 110-143 (187)
141 PLN02293 adenine phosphoribosy 21.7 2.1E+02 0.0045 22.0 4.6 33 184-216 122-154 (187)
142 cd01433 Ribosomal_L16_L10e Rib 20.9 80 0.0017 22.0 2.0 30 183-216 75-104 (112)
143 COG0260 PepB Leucyl aminopepti 20.6 93 0.002 28.0 2.7 28 170-198 302-329 (485)
144 PRK13812 orotate phosphoribosy 20.4 2.5E+02 0.0055 21.3 4.8 33 184-216 104-136 (176)
145 PRK13809 orotate phosphoribosy 20.1 2.4E+02 0.0053 22.1 4.8 33 184-216 115-147 (206)
146 cd06919 Asp_decarbox Aspartate 20.0 2.2E+02 0.0048 20.0 3.9 57 131-197 32-91 (111)
No 1
>KOG3209|consensus
Probab=99.94 E-value=3.6e-25 Score=191.54 Aligned_cols=214 Identities=25% Similarity=0.437 Sum_probs=177.4
Q ss_pred cccccceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 10 DMKYHQMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
+...+.--.|.|.+.+.| |||.+-++. ..++|..+.+.+.|+..| |+.||.|+.|||.++.+.+|.+++.+|..+
T Consensus 644 n~~pdk~ldV~L~rkesG-FGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~A 722 (984)
T KOG3209|consen 644 NQKPDKELDVFLRRKESG-FGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAA 722 (984)
T ss_pred ccCCccceeEEEEeeccc-cceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHH
Confidence 334444455778887666 999998754 569999999999999988 999999999999999999999999988765
Q ss_pred C-CCeEEEEEecCC----------------ceeeeEeecCCCCeeCeEEeC-----Ce-EEEEecCChhhhcC-CCCCCE
Q psy2263 86 P-VNNISIVVRDRP----------------FERNVTLHKDSAGHVGFQFKR-----GQ-IIRLVKESSASRNG-LLTDHH 141 (232)
Q Consensus 86 ~-~~~v~l~v~r~~----------------~~~~v~l~~~~~~~lg~~~~~-----~~-~~~~~~~~~a~~~g-l~~gd~ 141 (232)
. ...+.|+|+|+- .+..|.+++..+..+||-+.. +. +..+.++|||++-| |+.||+
T Consensus 723 ArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDr 802 (984)
T KOG3209|consen 723 ARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDR 802 (984)
T ss_pred HhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccce
Confidence 5 678999998821 246677888777778887642 22 67889999998777 999999
Q ss_pred EEEECCeEeecccc------------------------------------------------------------------
Q psy2263 142 ILEVNGQNVVGLKN------------------------------------------------------------------ 155 (232)
Q Consensus 142 i~~v~g~~~~~~~~------------------------------------------------------------------ 155 (232)
|+.|||+++-+++|
T Consensus 803 ilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpd 882 (984)
T KOG3209|consen 803 ILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPD 882 (984)
T ss_pred EEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCc
Confidence 99999999998877
Q ss_pred ---------------------cC--CCccceEEecC-------cEEEEccCChhhhCC-CCCCCEEEEECCeEcCCCCHH
Q psy2263 156 ---------------------DS--AGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDK 204 (232)
Q Consensus 156 ---------------------~~--~~~~g~~~~~g-------~v~~v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~ 204 (232)
.+ .+.+||++++| +|.++..++||.+.| ++.||+|++|||+++++++|+
T Consensus 883 t~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~ 962 (984)
T KOG3209|consen 883 TFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHD 962 (984)
T ss_pred cccceeccccccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHH
Confidence 01 34566777766 567799999999999 999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEeCC
Q psy2263 205 EIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 205 ~~~~~l~~~~~~~~l~v~r~ 224 (232)
.+.+++++.+..+.|.+.|+
T Consensus 963 rAIelIk~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 963 RAIELIKQGGRRVLLLLRRG 982 (984)
T ss_pred HHHHHHHhCCeEEEEEeccC
Confidence 99999999999998887765
No 2
>KOG3209|consensus
Probab=99.88 E-value=5.7e-21 Score=165.74 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=71.2
Q ss_pred ccceEEEEEEeeCCCccceEEeecC-----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIH-----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~-----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
........|.|. +.+|||++.+++ ..+.|.+|.+++||++.| |++||.|+.|||..+.+.++.+++++++.-+
T Consensus 342 kG~~ist~LvKg-~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiP 420 (984)
T KOG3209|consen 342 KGELISTKLVKG-YMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIP 420 (984)
T ss_pred CCeEEEEEEeec-ccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccc
Confidence 334455567776 445999998865 457899999999999999 9999999999999999999999999999876
Q ss_pred -CCeEEEEEec
Q psy2263 87 -VNNISIVVRD 96 (232)
Q Consensus 87 -~~~v~l~v~r 96 (232)
++.+.|+++|
T Consensus 421 vg~~V~L~lcR 431 (984)
T KOG3209|consen 421 VGQSVDLVLCR 431 (984)
T ss_pred cCCeeeEEEec
Confidence 8999999998
No 3
>KOG3580|consensus
Probab=99.88 E-value=1.1e-21 Score=167.66 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=74.1
Q ss_pred ccccccceEEEEEEeeCCCccceEEeecC---------CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHH
Q psy2263 9 EDMKYHQMTKLFLCKDIHGKIGLRVAAIH---------EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVH 79 (232)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~lGi~~~~~~---------~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~ 79 (232)
++...|.-..++|.|.++.+|||.+.++. ..++|+.|.||+||+. -|+.||+|+.|||+++.+..+..++
T Consensus 2 eE~~IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG-~LQenDrvvMVNGvsMenv~haFAv 80 (1027)
T KOG3580|consen 2 EEELIWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEG-LLQENDRVVMVNGVSMENVLHAFAV 80 (1027)
T ss_pred chhhhhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCccc-ccccCCeEEEEcCcchhhhHHHHHH
Confidence 45667888899999999999999998742 3488999999999976 4999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEEec
Q psy2263 80 ALLRNCPVNNISIVVRD 96 (232)
Q Consensus 80 ~~l~~~~~~~v~l~v~r 96 (232)
+.|+.+ +....|+|+|
T Consensus 81 QqLrks-gK~A~ItvkR 96 (1027)
T KOG3580|consen 81 QQLRKS-GKVAAITVKR 96 (1027)
T ss_pred HHHHhh-ccceeEEecc
Confidence 999865 5777777776
No 4
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.83 E-value=2.7e-19 Score=155.35 Aligned_cols=178 Identities=25% Similarity=0.377 Sum_probs=127.4
Q ss_pred eeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCe
Q psy2263 23 KDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNN 89 (232)
Q Consensus 23 ~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~ 89 (232)
+..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||.++.++ .++...+.. .+++.
T Consensus 230 ~~~~~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~ 307 (428)
T TIGR02037 230 KVQRGWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKK 307 (428)
T ss_pred cCcCCcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCE
Confidence 35678999998763 2689999999999999999999999999999999987 446666654 35789
Q ss_pred EEEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEe-cC
Q psy2263 90 ISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFK-RG 168 (232)
Q Consensus 90 v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~-~g 168 (232)
+.+++.|+++..++.+........ ... . .....|..+..+.......+++... .|
T Consensus 308 v~l~v~R~g~~~~~~v~l~~~~~~--~~~----------~------------~~~~lGi~~~~l~~~~~~~~~l~~~~~G 363 (428)
T TIGR02037 308 VTLGILRKGKEKTITVTLGASPEE--QAS----------S------------SNPFLGLTVANLSPEIRKELRLKGDVKG 363 (428)
T ss_pred EEEEEEECCEEEEEEEEECcCCCc--ccc----------c------------cccccceEEecCCHHHHHHcCCCcCcCc
Confidence 999999988887776653211100 000 0 0011222233222222222233221 45
Q ss_pred cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcccc
Q psy2263 169 QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVYH 228 (232)
Q Consensus 169 ~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~~ 228 (232)
.++. |.++|||+++||++||+|++|||+++.++ +++.+++++ .+..+.|.+.|+....
T Consensus 364 v~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g~~~ 424 (428)
T TIGR02037 364 VVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGGATI 424 (428)
T ss_pred eEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 5666 99999999999999999999999999988 999999986 4677999999887543
No 5
>PRK10139 serine endoprotease; Provisional
Probab=99.82 E-value=1.1e-18 Score=151.90 Aligned_cols=174 Identities=22% Similarity=0.309 Sum_probs=125.2
Q ss_pred EeeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCC
Q psy2263 22 CKDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVN 88 (232)
Q Consensus 22 ~~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~ 88 (232)
.+..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||+++.+| .++...+.. .+++
T Consensus 262 g~v~r~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~ 339 (455)
T PRK10139 262 GEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGT 339 (455)
T ss_pred CcccccceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCC
Confidence 456788999988652 2689999999999999999999999999999999998 456666654 4578
Q ss_pred eEEEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecC
Q psy2263 89 NISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG 168 (232)
Q Consensus 89 ~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g 168 (232)
.+.+++.|++++.++.+........ ... ..++.+. ..|..+.... ... ...|
T Consensus 340 ~v~l~V~R~G~~~~l~v~~~~~~~~---~~~-------------~~~~~~~-----~~g~~l~~~~-~~~------~~~G 391 (455)
T PRK10139 340 KVKLGLLRNGKPLEVEVTLDTSTSS---SAS-------------AEMITPA-----LQGATLSDGQ-LKD------GTKG 391 (455)
T ss_pred EEEEEEEECCEEEEEEEEECCCCCc---ccc-------------ccccccc-----ccccEecccc-ccc------CCCc
Confidence 9999999998887777754322110 000 0000000 0011111100 000 0124
Q ss_pred cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 169 QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 169 ~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.++. |.++|||+++||++||+|++|||+++.++ +++.+++++.+..+.|.+.|+...
T Consensus 392 v~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 392 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNES 449 (455)
T ss_pred eEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 4555 99999999999999999999999999998 999999988777889999888754
No 6
>PRK10942 serine endoprotease; Provisional
Probab=99.81 E-value=2.1e-18 Score=150.74 Aligned_cols=171 Identities=23% Similarity=0.340 Sum_probs=123.7
Q ss_pred EeeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCC
Q psy2263 22 CKDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVN 88 (232)
Q Consensus 22 ~~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~ 88 (232)
.+..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. .+++
T Consensus 283 g~v~rg~lGv~~~~l~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~ 360 (473)
T PRK10942 283 GQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGS 360 (473)
T ss_pred cccccceeeeEeeecCHHHHHhcCCCCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCC
Confidence 456778999988642 2589999999999999999999999999999999988 456666654 3478
Q ss_pred eEEEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecC
Q psy2263 89 NISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG 168 (232)
Q Consensus 89 ~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g 168 (232)
.+.+++.|+++..++.+........ .... ..... | +.+..+.... . ..|
T Consensus 361 ~v~l~v~R~G~~~~v~v~l~~~~~~--~~~~----------~~~~l----G-----l~g~~l~~~~----~------~~g 409 (473)
T PRK10942 361 KLTLGLLRDGKPVNVNVELQQSSQN--QVDS----------SNIFN----G-----IEGAELSNKG----G------DKG 409 (473)
T ss_pred EEEEEEEECCeEEEEEEEeCcCccc--cccc----------ccccc----c-----ceeeeccccc----C------CCC
Confidence 9999999988887776654221100 0000 00000 1 0111111000 0 124
Q ss_pred cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 169 QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 169 ~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.++. |.++|+|+++||++||+|++|||+++.+. +++.+++++.+..+.|++.|+...
T Consensus 410 vvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 410 VVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred eEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 4555 99999999999999999999999999998 999999998778899999888754
No 7
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.74 E-value=5e-17 Score=141.76 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=103.5
Q ss_pred eEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEecCCceeeeEeecCCCCeeCeEEe
Q psy2263 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFK 118 (232)
Q Consensus 40 ~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~ 118 (232)
.+|..|.++|||++|||+.||+|++|||+++.+++ ++...+.. .+++++.+++.|++++.+..+........ ..
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~--~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~---~~ 202 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWD--AVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWA---FE 202 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhhccCCceEEEEEeCCccceEEEEecccccc---cC
Confidence 47899999999999999999999999999999984 44444433 44788999999988766655433211100 00
Q ss_pred CCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecC-cEEEEccCChhhhCCCCCCCEEEEECCeE
Q psy2263 119 RGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG-QIIRLVKESSASRNGLLTDHHILEVNGQN 197 (232)
Q Consensus 119 ~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g-~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~ 197 (232)
. .........|+.. ..+ ..+ .+..|.++|||+++||++||+|++|||++
T Consensus 203 ~------~~~~~~~~lGl~~--------------~~~----------~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~ 252 (449)
T PRK10779 203 P------DKQDPVSSLGIRP--------------RGP----------QIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQP 252 (449)
T ss_pred c------cccchhhcccccc--------------cCC----------CcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEE
Confidence 0 0000000111100 000 001 24449999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHh-CCCeEEEEEeCCcc
Q psy2263 198 VVGLKDKEIREIVEK-APCVINLTIMPSYV 226 (232)
Q Consensus 198 ~~~~~~~~~~~~l~~-~~~~~~l~v~r~~~ 226 (232)
+.+. +|+.+.++. .+..+.+.+.|+..
T Consensus 253 V~s~--~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 253 LTQW--QTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred cCCH--HHHHHHHHhCCCCEEEEEEEECCE
Confidence 9988 999999877 44568888887764
No 8
>KOG3605|consensus
Probab=99.73 E-value=7.2e-18 Score=145.43 Aligned_cols=171 Identities=25% Similarity=0.445 Sum_probs=142.7
Q ss_pred cccceEEEEEEeeCCCccceEEeecC-----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 12 KYHQMTKLFLCKDIHGKIGLRVAAIH-----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 12 ~~~~~~~~~l~~~~~~~lGi~~~~~~-----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
+...+++|.+.|..++.||+-+.... +.++|.+...++||+++| |-.||+|++|||.++-++...-.+.+++..
T Consensus 642 kkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~ 721 (829)
T KOG3605|consen 642 KKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 721 (829)
T ss_pred hhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence 34568999999999999999997632 456788999999999999 999999999999999999887788888876
Q ss_pred C-CCeEEEEEecCCceeeeEeec-CCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccce
Q psy2263 86 P-VNNISIVVRDRPFERNVTLHK-DSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGF 163 (232)
Q Consensus 86 ~-~~~v~l~v~r~~~~~~v~l~~-~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~ 163 (232)
+ .+.|+++|.+.+...+|.+.+ +....|||++.
T Consensus 722 KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQ--------------------------------------------- 756 (829)
T KOG3605|consen 722 KNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQ--------------------------------------------- 756 (829)
T ss_pred cccceEEEEEecCCCceEEEeecccchhhccceee---------------------------------------------
Confidence 6 578999999988777776644 44455555554
Q ss_pred EEecCcEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccccc
Q psy2263 164 QFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHM 230 (232)
Q Consensus 164 ~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~~~ 230 (232)
.|++.+...|+-|++.|+|.|.+|++|||+.+-.+.|+.++++|..+-..+.++.++..+|+.+
T Consensus 757 ---NGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTMPasMfRLL 820 (829)
T KOG3605|consen 757 ---NGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTMPAAMFRLL 820 (829)
T ss_pred ---CcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcchHHHHHHh
Confidence 4456667788889999999999999999999999999999999999888888888877776543
No 9
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.66 E-value=1.7e-15 Score=130.94 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=101.1
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecCCCCeeCeEE
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQF 117 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~~~~~lg~~~ 117 (232)
.+.+|..|.++|||+++||++||+|+++||.++.++. ++.+.+.... .++.+.+.|+++..++.+. +++..
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~--dl~~~ia~~~-~~v~~~I~r~g~~~~l~v~------l~~~~ 198 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFK--DVRQQIADIA-GEPMVEILAERENWTFEVM------KELIP 198 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhhc-ccceEEEEEecCceEeccc------cccee
Confidence 5788999999999999999999999999999999884 4655555445 6777888886655443211 11110
Q ss_pred eCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCc-EEEEccCChhhhCCCCCCCEEEEECCe
Q psy2263 118 KRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-IIRLVKESSASRNGLLTDHHILEVNGQ 196 (232)
Q Consensus 118 ~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~-v~~v~~~s~a~~~Gl~~GD~Il~Vng~ 196 (232)
..+. .+. +..|.++|||+++||++||+|++|||+
T Consensus 199 ----------~~~~-----------------------------------~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~ 233 (420)
T TIGR00054 199 ----------RGPK-----------------------------------IEPVLSDVTPNSPAEKAGLKEGDYIQSINGE 233 (420)
T ss_pred ----------cCCC-----------------------------------cCcEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 0000 012 444999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHh-CCCeEEEEEeCCccc
Q psy2263 197 NVVGLKDKEIREIVEK-APCVINLTIMPSYVY 227 (232)
Q Consensus 197 ~~~~~~~~~~~~~l~~-~~~~~~l~v~r~~~~ 227 (232)
++.+. +|+.+.++. .+..+.+.+.|+...
T Consensus 234 ~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 234 KLRSW--TDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred ECCCH--HHHHHHHHhCCCCceEEEEEECCEE
Confidence 99988 999999987 445688888877643
No 10
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.52 E-value=1.4e-13 Score=92.21 Aligned_cols=78 Identities=36% Similarity=0.537 Sum_probs=65.2
Q ss_pred CccceEEeecCC--ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEecCCceeee
Q psy2263 27 GKIGLRVAAIHE--GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR-NCPVNNISIVVRDRPFERNV 103 (232)
Q Consensus 27 ~~lGi~~~~~~~--g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~-~~~~~~v~l~v~r~~~~~~v 103 (232)
++||+.+..... +++|..|.++|||+++||+.||+|++|||.++.++ .++...+. ..+++++.|++.|+++..++
T Consensus 1 ~~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~ 78 (82)
T PF13180_consen 1 GGLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEELTV 78 (82)
T ss_dssp -E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEEEEE
T ss_pred CEECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence 579999998765 99999999999999999999999999999999876 45666664 45699999999999988887
Q ss_pred Eee
Q psy2263 104 TLH 106 (232)
Q Consensus 104 ~l~ 106 (232)
.+.
T Consensus 79 ~v~ 81 (82)
T PF13180_consen 79 EVT 81 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 11
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.51 E-value=3.2e-13 Score=90.32 Aligned_cols=77 Identities=36% Similarity=0.636 Sum_probs=67.8
Q ss_pred EEEEEeeCCCccceEEeecCC----ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 18 KLFLCKDIHGKIGLRVAAIHE----GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~~~----g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
++++.|.+.++|||++..... +++|..|.++|||+.+||+.||+|++|||.++.++++.++..+++.+. ..+.|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSAS-NPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHST-SEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCC-CcEEEE
Confidence 467788788999999988543 899999999999999999999999999999999999999999998765 478877
Q ss_pred Ee
Q psy2263 94 VR 95 (232)
Q Consensus 94 v~ 95 (232)
+.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 63
No 12
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.39 E-value=2e-12 Score=86.42 Aligned_cols=66 Identities=33% Similarity=0.611 Sum_probs=59.2
Q ss_pred CCCccceEEec-------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 157 SAGHVGFQFKR-------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~-------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
..+++||.+.. +.++. +.++|||+++||++||+|++|||+++.++++++++.+++..++.++|+|+
T Consensus 8 ~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 8 GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 56778888852 56666 99999999999999999999999999999999999999999999999874
No 13
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.38 E-value=8.7e-12 Score=84.01 Aligned_cols=81 Identities=32% Similarity=0.519 Sum_probs=69.3
Q ss_pred CccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecC-CceeeeEe
Q psy2263 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR-PFERNVTL 105 (232)
Q Consensus 27 ~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~-~~~~~v~l 105 (232)
+.||+.+.....+++|..+.+++||+++||++||+|++|||.++.++++.++...+....+..+.+++.|+ +...++.+
T Consensus 2 ~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~ 81 (85)
T cd00988 2 GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTL 81 (85)
T ss_pred eEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEE
Confidence 56899998878899999999999999999999999999999999999666677777655678899999988 77777666
Q ss_pred ec
Q psy2263 106 HK 107 (232)
Q Consensus 106 ~~ 107 (232)
.+
T Consensus 82 ~~ 83 (85)
T cd00988 82 TR 83 (85)
T ss_pred EE
Confidence 43
No 14
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.35 E-value=1.4e-11 Score=79.89 Aligned_cols=68 Identities=37% Similarity=0.566 Sum_probs=60.7
Q ss_pred CccceEEeecCC-ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 27 GKIGLRVAAIHE-GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 27 ~~lGi~~~~~~~-g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.++|+.+..... +++|..|.+++||+.+||++||+|++|||.++.++++.++.++++...+..+.|++
T Consensus 1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 368999988765 99999999999999999999999999999999999888889999876678888765
No 15
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.25 E-value=2e-10 Score=76.68 Aligned_cols=77 Identities=36% Similarity=0.601 Sum_probs=64.3
Q ss_pred EEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
+.+.+.+...+++|+.+.... .+++|..|.++|||+.+||+.||+|++|||.++.+++..++...++... ..+.+.
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~-~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSG-DEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCC-CeEEEE
Confidence 456777777888999998764 5899999999999999999999999999999999877788888887643 355555
Q ss_pred E
Q psy2263 94 V 94 (232)
Q Consensus 94 v 94 (232)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 4
No 16
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.25 E-value=9.3e-11 Score=77.77 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=62.7
Q ss_pred ccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEe
Q psy2263 28 KIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTL 105 (232)
Q Consensus 28 ~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l 105 (232)
|+||........++|..|.++|||+.+||++||+|++|||.++.++ .++...+....+..+.+++.|++...++.+
T Consensus 2 ~~~~~~g~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l 77 (79)
T cd00989 2 ILGFVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGETITLTL 77 (79)
T ss_pred eeeEeccCCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCEEEEEEe
Confidence 6777776555668999999999999999999999999999999987 457777766556789999988877666654
No 17
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.21 E-value=4.6e-10 Score=75.24 Aligned_cols=79 Identities=34% Similarity=0.474 Sum_probs=65.4
Q ss_pred EEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
..+.+.+.. ..+|+.+.... .+++|..|.+++||+.+||++||+|++|||.++.++++.+....+... +..+.+.
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~-~~~~~l~ 80 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKVTLT 80 (85)
T ss_pred EEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEE
Confidence 345667776 78999998754 689999999999999999999999999999999999886666666643 4588888
Q ss_pred EecC
Q psy2263 94 VRDR 97 (232)
Q Consensus 94 v~r~ 97 (232)
+.|+
T Consensus 81 i~r~ 84 (85)
T smart00228 81 VLRG 84 (85)
T ss_pred EEeC
Confidence 8764
No 18
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.17 E-value=3.4e-10 Score=75.24 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=60.3
Q ss_pred ccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEee
Q psy2263 28 KIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLH 106 (232)
Q Consensus 28 ~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~ 106 (232)
++|+.+...+.+++|..|.++|||+.+||++||+|++|||.++.++. ...+.+ ..+..+.+++.|++...++.+.
T Consensus 2 ~~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~--~~l~~~--~~~~~v~l~v~r~g~~~~~~v~ 76 (80)
T cd00990 2 YLGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQ--DRLKEY--QAGDPVELTVFRDDRLIEVPLT 76 (80)
T ss_pred cccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHH--HHHHhc--CCCCEEEEEEEECCEEEEEEEE
Confidence 68999887777899999999999999999999999999999998742 232222 2467899999998877666554
No 19
>KOG1421|consensus
Probab=99.15 E-value=5.9e-10 Score=97.86 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=121.6
Q ss_pred eEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecCCCCeeCeEEeC
Q psy2263 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKR 119 (232)
Q Consensus 40 ~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~ 119 (232)
++|..|.++|||.+. |+.||.+++||+..+.++ ..+.+++-...++.+.|++.|.+++.++++..+.....
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~i------ 375 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGI------ 375 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCC------
Confidence 568999999999984 999999999999888876 66888888777999999999999988887765432211
Q ss_pred CeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeEcC
Q psy2263 120 GQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVV 199 (232)
Q Consensus 120 ~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~ 199 (232)
--|+.+++-|.-+++++.+.+..+-|++. |.+++--.++++.+.+.+ |.+|.+||++++.
T Consensus 376 ------------------tp~R~levcGav~hdlsyq~ar~y~lP~~-GvyVa~~~gsf~~~~~~y-~~ii~~vanK~tP 435 (955)
T KOG1421|consen 376 ------------------TPDRFLEVCGAVFHDLSYQLARLYALPVE-GVYVASPGGSFRHRGPRY-GQIIDSVANKPTP 435 (955)
T ss_pred ------------------CCceEEEEcceEecCCCHHHHhhcccccC-cEEEccCCCCccccCCcc-eEEEEeecCCcCC
Confidence 12566778888888888777777777766 778775568888888888 9999999999999
Q ss_pred CCCHHHHHHHHHhCCCeEEEE
Q psy2263 200 GLKDKEIREIVEKAPCVINLT 220 (232)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~l~ 220 (232)
++ +.+...+++.++.-.+.
T Consensus 436 dL--daFidvlk~L~dg~rV~ 454 (955)
T KOG1421|consen 436 DL--DAFIDVLKELPDGARVP 454 (955)
T ss_pred CH--HHHHHHHHhccCCCeee
Confidence 99 99999999866553333
No 20
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.13 E-value=6.4e-10 Score=73.86 Aligned_cols=69 Identities=25% Similarity=0.280 Sum_probs=58.1
Q ss_pred cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCCceeeeEee
Q psy2263 36 IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRPFERNVTLH 106 (232)
Q Consensus 36 ~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~~~~~v~l~ 106 (232)
...|++|..|.++|||+++||+.||+|++|||.++.+| .++...+... ++..+.+++.|+++..++++.
T Consensus 8 ~~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 8 AVAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred cCCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 34689999999999999999999999999999999987 4577777654 478899999998877766553
No 21
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.12 E-value=3e-10 Score=75.99 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=49.7
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
|.++. |.++|||+++||++||+|++|||.++.+. .++.+.+.. .+..+.|++.|+...
T Consensus 15 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 15 GVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp SEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred eEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 66555 99999999999999999999999999888 999999964 667899999987754
No 22
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.11 E-value=8.7e-10 Score=71.30 Aligned_cols=62 Identities=31% Similarity=0.507 Sum_probs=52.2
Q ss_pred ccceEEec----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCC-CeEEEEE
Q psy2263 160 HVGFQFKR----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP-CVINLTI 221 (232)
Q Consensus 160 ~~g~~~~~----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~-~~~~l~v 221 (232)
.+||.+.. +.++. +.+++||+.+||++||+|++|||.++.+++++++.+.++... ..+.|.+
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 45666642 55665 999999999999999999999999999999999999999865 5677765
No 23
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.07 E-value=1.5e-09 Score=72.36 Aligned_cols=64 Identities=33% Similarity=0.560 Sum_probs=54.5
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEE
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v 221 (232)
.+++||.+.. |.++. +.+++||+++||++||+|++|||.++.+++++++.+.++.....+.|.+
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 5667777752 46666 9999999999999999999999999998888999999998777777765
No 24
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.05 E-value=2.8e-09 Score=72.33 Aligned_cols=64 Identities=38% Similarity=0.495 Sum_probs=53.6
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEecCCceeee
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVRDRPFERNV 103 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~v~r~~~~~~v 103 (232)
.|++|..|.+++||+.+||+.||.|++|||.++.++ .++...+.... +..+.+.+.|+++..++
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~~~~~ 88 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGKELTV 88 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEe
Confidence 589999999999999999999999999999999987 45666665543 78899999888766554
No 25
>KOG3580|consensus
Probab=99.04 E-value=9.1e-10 Score=95.42 Aligned_cols=67 Identities=19% Similarity=0.388 Sum_probs=57.7
Q ss_pred cceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 161 VGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 161 ~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
+|+.+...+|+. +...+.|++.| |+.||+||.|||....+++..++..+|....+.+.|+|.|+...
T Consensus 213 yGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q 281 (1027)
T KOG3580|consen 213 YGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ 281 (1027)
T ss_pred hcccccchhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence 344444447787 88889888887 99999999999999999999999999999999999999998753
No 26
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.98 E-value=9e-09 Score=87.90 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=94.2
Q ss_pred EEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe-cCCceeeeEeecCCCCeeCeEEeCC
Q psy2263 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR-DRPFERNVTLHKDSAGHVGFQFKRG 120 (232)
Q Consensus 42 V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~-r~~~~~~v~l~~~~~~~lg~~~~~~ 120 (232)
|..|.|+|+|+++||++||+|++|||+++.+|. +....+. +..+.+++. |+++..++.+.++....+|+.+..+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~--D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~ 76 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLI--DYQFLCA---DEELELEVLDANGESHQIEIEKDLDEDLGLEFTTA 76 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHhc---CCcEEEEEEcCCCeEEEEEEecCCCCCCcEEeccc
Confidence 678999999999999999999999999999984 4544443 366888886 7888889999888888899888754
Q ss_pred eEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEEEccCChhhhCC--CCCCC-EE--EEECC
Q psy2263 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG--LLTDH-HI--LEVNG 195 (232)
Q Consensus 121 ~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~v~~~s~a~~~G--l~~GD-~I--l~Vng 195 (232)
.+...... ++.. .|.-|++-.+.-+.. ++-.| ++ +.=|-
T Consensus 77 ~~d~~~~C-----------------~N~C-------------------~FCFidQlP~gmR~sLY~KDDDyRLSFL~Gny 120 (433)
T TIGR03279 77 LFDGLIQC-----------------NNRC-------------------PFCFIDQQPPGKRESLYLKDDDYRLSFLYGSY 120 (433)
T ss_pred cCCccccc-----------------CCcC-------------------ceEeccCCCCCCcCcceeccCcchhhhhccce
Confidence 43322111 1111 133333333333333 23333 22 22344
Q ss_pred eEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 196 QNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
..++|++.+|+.++++..=+++.+.|.
T Consensus 121 iTLTNl~~~d~~RI~~~~lspl~iSVh 147 (433)
T TIGR03279 121 LTLTNLPPAEWQRIEQLRLSPLYVSVH 147 (433)
T ss_pred eeecCCCHHHHHHHHHcCCCCEEEEEe
Confidence 677889999999999986677666653
No 27
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.96 E-value=7.2e-09 Score=69.37 Aligned_cols=66 Identities=35% Similarity=0.568 Sum_probs=56.0
Q ss_pred CccceEEe------cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 159 GHVGFQFK------RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~------~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
..+||.+. .|.++. +.+++||+++||++||+|+.||++++.++++.+....+...+..+.|.+.|+
T Consensus 12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 45666663 366777 9999999999999999999999999999999999998888777888888764
No 28
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.95 E-value=7.9e-09 Score=88.83 Aligned_cols=84 Identities=29% Similarity=0.434 Sum_probs=68.9
Q ss_pred eCCCccceEEeecC------CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecC
Q psy2263 24 DIHGKIGLRVAAIH------EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97 (232)
Q Consensus 24 ~~~~~lGi~~~~~~------~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~ 97 (232)
....++|+.+.... .+++|..|.++|||+++||+.||+|++|||+++.+++..++...++...++.+.+++.|+
T Consensus 82 ~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 82 GAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 44566888876432 279999999999999999999999999999999988766677777765688999999998
Q ss_pred CceeeeEeec
Q psy2263 98 PFERNVTLHK 107 (232)
Q Consensus 98 ~~~~~v~l~~ 107 (232)
+.+.++.+.+
T Consensus 162 g~~~~~~l~r 171 (389)
T PLN00049 162 PETRLVTLTR 171 (389)
T ss_pred CEEEEEEEEe
Confidence 8777766654
No 29
>KOG3550|consensus
Probab=98.95 E-value=3.2e-09 Score=76.61 Aligned_cols=68 Identities=25% Similarity=0.407 Sum_probs=59.6
Q ss_pred cCCCccceEEecC------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeC
Q psy2263 156 DSAGHVGFQFKRG------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223 (232)
Q Consensus 156 ~~~~~~g~~~~~g------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r 223 (232)
+....+||.+.+| ++++ +.||+.|++-| |+.||++++|||+++.+-.|+.++++|+++.+.+.|.++.
T Consensus 98 ktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvry 173 (207)
T KOG3550|consen 98 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRY 173 (207)
T ss_pred ccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEec
Confidence 3455688888766 6666 99999998875 9999999999999999999999999999999999998864
No 30
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.94 E-value=1.1e-08 Score=67.79 Aligned_cols=67 Identities=28% Similarity=0.402 Sum_probs=55.4
Q ss_pred CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEecCCceeeeEee
Q psy2263 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRDRPFERNVTLH 106 (232)
Q Consensus 37 ~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r~~~~~~v~l~ 106 (232)
..|++|..|.++|||+. +|+.||.|++|||.++.++ .++...+.. .++..+.+++.|+++..++.+.
T Consensus 7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~ 74 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREEKELPEDLI 74 (79)
T ss_pred ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence 35899999999999987 7999999999999999987 456667764 4578899999998877666554
No 31
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.94 E-value=6.7e-09 Score=87.66 Aligned_cols=77 Identities=29% Similarity=0.445 Sum_probs=64.8
Q ss_pred CCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCcee
Q psy2263 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFER 101 (232)
Q Consensus 25 ~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~ 101 (232)
...++|+.+.....+++|..|.++|||+++||+.||+|++|||+++.+|+..++...+....+..+.+++.|++...
T Consensus 49 ~~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 125 (334)
T TIGR00225 49 SLEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSK 125 (334)
T ss_pred ceEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCc
Confidence 34568999887667899999999999999999999999999999999987656667776656889999999976443
No 32
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.94 E-value=7.2e-09 Score=69.61 Aligned_cols=65 Identities=23% Similarity=0.464 Sum_probs=53.7
Q ss_pred ccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCC
Q psy2263 160 HVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPS 224 (232)
Q Consensus 160 ~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~ 224 (232)
.+|+.+. .+.++. +.+++||+++||++||+|++|||+++.+.++.++...++. .+..+.+.+.|+
T Consensus 3 ~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 3455553 345565 9999999999999999999999999999999999998876 456788988876
No 33
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.91 E-value=6.4e-09 Score=69.01 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=49.7
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~ 226 (232)
.|.++. +.++|||+.+||++||+|++|||+++.++ +++...+... +..+.+.+.|+..
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCE
Confidence 455555 99999999999999999999999999988 9999999864 5678888887663
No 34
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.91 E-value=3.1e-09 Score=72.17 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=50.7
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCcccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYVYH 228 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~~~ 228 (232)
.|.++. +.+++||+++||++||+|++|||+++.+. .++.+++... +..+.+.+.|+..+.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~~~ 86 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGKEL 86 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 355665 99999999999999999999999999988 8888888765 677899988776543
No 35
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.90 E-value=1.2e-08 Score=87.89 Aligned_cols=87 Identities=29% Similarity=0.481 Sum_probs=76.7
Q ss_pred EeeCCCccceEEeecC-CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecC--C
Q psy2263 22 CKDIHGKIGLRVAAIH-EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR--P 98 (232)
Q Consensus 22 ~~~~~~~lGi~~~~~~-~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~--~ 98 (232)
++.+.+++|+.+.... .++.|.+..+++||+++|+++||+|++|||.++.+....++...++..+|+.++|++.|. .
T Consensus 95 ~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~ 174 (406)
T COG0793 95 TSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGG 174 (406)
T ss_pred ccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCC
Confidence 4567888999998866 899999999999999999999999999999999999877899999988899999999995 5
Q ss_pred ceeeeEeecC
Q psy2263 99 FERNVTLHKD 108 (232)
Q Consensus 99 ~~~~v~l~~~ 108 (232)
.++++++.++
T Consensus 175 k~~~v~l~Re 184 (406)
T COG0793 175 KPFTVTLTRE 184 (406)
T ss_pred ceeEEEEEEE
Confidence 5677776654
No 36
>PRK10898 serine endoprotease; Provisional
Probab=98.89 E-value=1.9e-08 Score=85.35 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=68.1
Q ss_pred EeeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCC
Q psy2263 22 CKDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVN 88 (232)
Q Consensus 22 ~~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~ 88 (232)
.+..++|||+..... ..|++|..|.++|||+++||+.||+|++|||+++.++ .++.+.+.. .+++
T Consensus 251 G~~~~~~lGi~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~ 328 (353)
T PRK10898 251 GRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGS 328 (353)
T ss_pred CcccccccceEEEECCHHHHHhcCCCCCCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCC
Confidence 445678999987642 2689999999999999999999999999999999987 345555554 4578
Q ss_pred eEEEEEecCCceeeeEeec
Q psy2263 89 NISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 89 ~v~l~v~r~~~~~~v~l~~ 107 (232)
.+.+++.|+++..++.+..
T Consensus 329 ~v~l~v~R~g~~~~~~v~l 347 (353)
T PRK10898 329 VIPVVVMRDDKQLTLQVTI 347 (353)
T ss_pred EEEEEEEECCEEEEEEEEe
Confidence 9999999988877776654
No 37
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.85 E-value=2.2e-08 Score=84.94 Aligned_cols=83 Identities=24% Similarity=0.379 Sum_probs=67.9
Q ss_pred eeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCe
Q psy2263 23 KDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNN 89 (232)
Q Consensus 23 ~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~ 89 (232)
+..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. .+++.
T Consensus 251 ~~~r~~lGv~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~ 328 (351)
T TIGR02038 251 RVIRGYIGVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSK 328 (351)
T ss_pred cccceEeeeEEEECCHHHHHhcCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCE
Confidence 44567899987652 1589999999999999999999999999999999987 456666654 45889
Q ss_pred EEEEEecCCceeeeEeec
Q psy2263 90 ISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 90 v~l~v~r~~~~~~v~l~~ 107 (232)
+.+++.|+++..++.+..
T Consensus 329 v~l~v~R~g~~~~~~v~l 346 (351)
T TIGR02038 329 VMVTVLRQGKQLELPVTI 346 (351)
T ss_pred EEEEEEECCEEEEEEEEe
Confidence 999999988877776644
No 38
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.80 E-value=6.2e-08 Score=82.27 Aligned_cols=89 Identities=18% Similarity=0.397 Sum_probs=69.9
Q ss_pred CccceEEeecCCceEEEEec--------CCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCC
Q psy2263 27 GKIGLRVAAIHEGVFVCLVQ--------EGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98 (232)
Q Consensus 27 ~~lGi~~~~~~~g~~V~~V~--------~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 98 (232)
.++|+.+.. .|++|.... .++||+.+||+.||.|++|||.++.+| .++.+.+....+..+.+++.|++
T Consensus 96 ~~iGI~l~t--~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 96 QSIGVKLNT--KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGG 171 (402)
T ss_pred EEEEEEEec--CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECC
Confidence 457777744 688875442 268999999999999999999999988 56778887766889999999998
Q ss_pred ceeeeEeec-----CCCCeeCeEEeC
Q psy2263 99 FERNVTLHK-----DSAGHVGFQFKR 119 (232)
Q Consensus 99 ~~~~v~l~~-----~~~~~lg~~~~~ 119 (232)
+..++.+.+ +....+|+++++
T Consensus 172 e~~tv~V~Pv~~~~d~~ykLGl~VrD 197 (402)
T TIGR02860 172 KIIETVIKPVKDKEEGRYRIGLYIRD 197 (402)
T ss_pred EEEEEEEEEeeeCCCCCEEEEEEEEc
Confidence 888777753 234568888765
No 39
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.79 E-value=2.5e-07 Score=67.63 Aligned_cols=110 Identities=23% Similarity=0.298 Sum_probs=74.1
Q ss_pred cccccceEEEEEEee----CCCccceEEee------cCCceEEEEecCCCHHhhcCCCC-CCEEEEECCeeCCCCCHHHH
Q psy2263 10 DMKYHQMTKLFLCKD----IHGKIGLRVAA------IHEGVFVCLVQEGSPAALVGLRF-GDQILQVNGKTVAGSNMHQV 78 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~----~~~~lGi~~~~------~~~g~~V~~V~~~s~A~~agL~~-GD~I~~Vng~~v~~~~~~~~ 78 (232)
+++....|++.+... ..+.||+++.- ...++-|..|.|||||+.|||++ .|.|+.+++..+.+. +++
T Consensus 5 ~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l 82 (138)
T PF04495_consen 5 NAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDL 82 (138)
T ss_dssp ETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHH
T ss_pred ECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHH
Confidence 345667788888542 24668998865 23677899999999999999998 699999999999876 457
Q ss_pred HHHHhhCCCCeEEEEEec--CCceeeeEeecC----CCCeeCeEEeCCe
Q psy2263 79 HALLRNCPVNNISIVVRD--RPFERNVTLHKD----SAGHVGFQFKRGQ 121 (232)
Q Consensus 79 ~~~l~~~~~~~v~l~v~r--~~~~~~v~l~~~----~~~~lg~~~~~~~ 121 (232)
.+.+....+.++.|.|.. ....+.+.+.+. ..+-||..+..|.
T Consensus 83 ~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig~G~ 131 (138)
T PF04495_consen 83 FELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIGYGY 131 (138)
T ss_dssp HHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE-SG
T ss_pred HHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEeccee
Confidence 888887778899998865 455677888664 3567888876554
No 40
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.78 E-value=4e-08 Score=64.97 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=47.1
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCcc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSYV 226 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~~ 226 (232)
+..+.++|+|+++||++||+|++|||.++.+. +++...+... +..+.+.+.|+..
T Consensus 16 V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 16 IGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred EEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCE
Confidence 34499999999999999999999999999987 8999998775 5678888877654
No 41
>KOG3553|consensus
Probab=98.77 E-value=8.8e-09 Score=69.00 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=48.0
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
.|+++. |.+||||+.+||+.+|.|+.|||+++.-+||+.++..+++ ...+.+.|.|..
T Consensus 59 ~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~~ 117 (124)
T KOG3553|consen 59 KGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQS 117 (124)
T ss_pred ccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhhc
Confidence 467666 9999999999999999999999999999999999998887 233444455544
No 42
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.76 E-value=6.4e-08 Score=78.45 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCCcee
Q psy2263 26 HGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRPFER 101 (232)
Q Consensus 26 ~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~~~~ 101 (232)
..++|+..... ..|+.|..+.++++|+++||+.||+|++|||+++.++ .++.+.+... +++.+.+++.|+++..
T Consensus 176 ~~~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~~ 253 (259)
T TIGR01713 176 FDYIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQRE 253 (259)
T ss_pred hheEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 45677776542 2689999999999999999999999999999999987 4566666654 4689999999999887
Q ss_pred eeEe
Q psy2263 102 NVTL 105 (232)
Q Consensus 102 ~v~l 105 (232)
++.+
T Consensus 254 ~i~v 257 (259)
T TIGR01713 254 DIYV 257 (259)
T ss_pred EEEE
Confidence 7765
No 43
>KOG3550|consensus
Probab=98.76 E-value=4e-08 Score=71.00 Aligned_cols=82 Identities=28% Similarity=0.423 Sum_probs=66.8
Q ss_pred ceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
.+|-+.+-+.. ++|||.+-++ +..+||+.+.||+.|++-| |+.||++++|||+++++-.++-++.+++... .++
T Consensus 90 hprvvelpktd-eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~-gsv 167 (207)
T KOG3550|consen 90 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV-GSV 167 (207)
T ss_pred CCceeecCccc-cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc-CcE
Confidence 35556666664 5599999764 4789999999999999866 9999999999999999998888999998754 678
Q ss_pred EEEEecCC
Q psy2263 91 SIVVRDRP 98 (232)
Q Consensus 91 ~l~v~r~~ 98 (232)
.++++..+
T Consensus 168 klvvrytp 175 (207)
T KOG3550|consen 168 KLVVRYTP 175 (207)
T ss_pred EEEEecCh
Confidence 88887543
No 44
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.72 E-value=4.9e-08 Score=64.73 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=46.6
Q ss_pred cceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 161 VGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 161 ~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
+|+.+. +|.++. |.++|||+.+||++||+|++|||+++.++ .++...+ ..+..+.+.+.|+..
T Consensus 3 ~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~--~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 3 LGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL--QDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred ccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH--HHHHHhc-CCCCEEEEEEEECCE
Confidence 455553 235555 99999999999999999999999999874 5544433 245678888877654
No 45
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.71 E-value=8.5e-08 Score=83.31 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=61.3
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecCC
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDS 109 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~~ 109 (232)
.+..|..|.++|||+++||++||+|++|||+++.+| +++...+...+++++.+++.|++++.++.+.+..
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~ 272 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGETLSISLTPEA 272 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcC
Confidence 468899999999999999999999999999999988 5677778766678899999999988888887653
No 46
>KOG3551|consensus
Probab=98.71 E-value=1.8e-08 Score=83.31 Aligned_cols=67 Identities=27% Similarity=0.439 Sum_probs=61.3
Q ss_pred cCCCccceEEecC------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 156 DSAGHVGFQFKRG------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 156 ~~~~~~g~~~~~g------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
++.+.+|+++++| ++++ +.+|-+|+..+ |..||.|++|||.++.+.||+|+++.|+..+..+.|.|.
T Consensus 93 ~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levK 167 (506)
T KOG3551|consen 93 QDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVK 167 (506)
T ss_pred ecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeee
Confidence 5678899999877 6777 99999999998 999999999999999999999999999999999888875
No 47
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.68 E-value=1.3e-07 Score=85.72 Aligned_cols=85 Identities=26% Similarity=0.306 Sum_probs=68.8
Q ss_pred eeCCCccceEEeecCCceEEEEecCCCHHhhc-CCCCCCEEEEEC--Ce---eCCCCCHHHHHHHHhhCCCCeEEEEEec
Q psy2263 23 KDIHGKIGLRVAAIHEGVFVCLVQEGSPAALV-GLRFGDQILQVN--GK---TVAGSNMHQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 23 ~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vn--g~---~v~~~~~~~~~~~l~~~~~~~v~l~v~r 96 (232)
....+++|+.+.....+++|..|.|||||+++ ||++||+|++|| |. ++.+|+..++..+++...|+.+.|++.|
T Consensus 240 ~~~~~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 240 NLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred CCceeEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 34456789999877778999999999999998 899999999999 43 5567777788899988779999999988
Q ss_pred C---CceeeeEeec
Q psy2263 97 R---PFERNVTLHK 107 (232)
Q Consensus 97 ~---~~~~~v~l~~ 107 (232)
. +.+.++++.+
T Consensus 320 ~~~~~~~~~vtl~R 333 (667)
T PRK11186 320 AGKGTKTRIVTLTR 333 (667)
T ss_pred CCCCCceEEEEEEe
Confidence 3 3556666654
No 48
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.66 E-value=1.4e-07 Score=82.73 Aligned_cols=78 Identities=24% Similarity=0.386 Sum_probs=62.7
Q ss_pred cceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecC
Q psy2263 29 IGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 29 lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
+|+.......+.+|..|.++|||+++||++||+|++|||+++.+| .++.+.+...+++.+.+++.|+++..++.+.+.
T Consensus 212 lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~ 289 (449)
T PRK10779 212 LGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSPLSLTLTPD 289 (449)
T ss_pred ccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEEEEEEEEee
Confidence 555332222357899999999999999999999999999999988 457777776667889999999998877777653
No 49
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.65 E-value=1.3e-07 Score=62.60 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=46.7
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
|.++. |.++|||+. ||++||+|++|||.++.+. +++..++.. .+..+.+.+.|+..
T Consensus 9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 44555 999999986 7999999999999999987 899999875 45678888887664
No 50
>KOG3553|consensus
Probab=98.59 E-value=7.5e-08 Score=64.57 Aligned_cols=66 Identities=32% Similarity=0.533 Sum_probs=53.7
Q ss_pred cceEEeec-------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 29 IGLRVAAI-------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 29 lGi~~~~~-------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
+||.+.++ +.|+||..|..||||+.|||+.+|.|+.+||-...-+++..+++.++. ...+.+.+.
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k--~~vl~mLVa 114 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK--EEVLRMLVA 114 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH--hHHHHHHHH
Confidence 67777652 388999999999999999999999999999999999999888888865 233444444
Q ss_pred c
Q psy2263 96 D 96 (232)
Q Consensus 96 r 96 (232)
|
T Consensus 115 R 115 (124)
T KOG3553|consen 115 R 115 (124)
T ss_pred h
Confidence 4
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.57 E-value=8.7e-07 Score=59.45 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=53.4
Q ss_pred CccceEEeecCCceEEEEecCC--------CHHhhcC--CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEec
Q psy2263 27 GKIGLRVAAIHEGVFVCLVQEG--------SPAALVG--LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 27 ~~lGi~~~~~~~g~~V~~V~~~--------s~A~~ag--L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r 96 (232)
|.||+.+.-...+..|..+.++ ||..+.| +++||.|++|||+++..- ....++|....+..+.|++.+
T Consensus 1 G~LGAd~~~~~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 1 GLLGADFSYDNGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp -B-SEEEEEETTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-
T ss_pred CccceEEEEcCCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEec
Confidence 4588888877788889999997 6666777 779999999999999875 357888887789999999998
Q ss_pred CC-ceeeeE
Q psy2263 97 RP-FERNVT 104 (232)
Q Consensus 97 ~~-~~~~v~ 104 (232)
.+ ..+++.
T Consensus 79 ~~~~~R~v~ 87 (88)
T PF14685_consen 79 KPGGARTVV 87 (88)
T ss_dssp STT-EEEEE
T ss_pred CCCCceEEE
Confidence 66 455553
No 52
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.57 E-value=4e-07 Score=79.44 Aligned_cols=76 Identities=33% Similarity=0.425 Sum_probs=63.1
Q ss_pred CccceEEeec-------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEE
Q psy2263 27 GKIGLRVAAI-------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISI 92 (232)
Q Consensus 27 ~~lGi~~~~~-------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l 92 (232)
.++|+.+... ..|++|..|.++|||+++||++||+|++|||+++.++ .++.+.+... .+..+.+
T Consensus 338 ~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l 415 (428)
T TIGR02037 338 PFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVAL 415 (428)
T ss_pred cccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEE
Confidence 4688888631 1589999999999999999999999999999999987 5677777764 4788999
Q ss_pred EEecCCceeeeE
Q psy2263 93 VVRDRPFERNVT 104 (232)
Q Consensus 93 ~v~r~~~~~~v~ 104 (232)
.+.|+++...+.
T Consensus 416 ~v~R~g~~~~~~ 427 (428)
T TIGR02037 416 LILRGGATIFVT 427 (428)
T ss_pred EEEECCEEEEEE
Confidence 999988776553
No 53
>KOG3551|consensus
Probab=98.57 E-value=1.6e-07 Score=77.83 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=69.4
Q ss_pred EEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
|.|++.|...++|||++.++ .-.++|+++.+|-.|++++ |..||-|++|||.++.+.+|+++++.++.. |..+.+
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra-GkeV~l 164 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA-GKEVLL 164 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh-Cceeee
Confidence 88999999999999999874 3568999999999999988 999999999999999999999999999964 677666
Q ss_pred EEe
Q psy2263 93 VVR 95 (232)
Q Consensus 93 ~v~ 95 (232)
.+.
T Consensus 165 evK 167 (506)
T KOG3551|consen 165 EVK 167 (506)
T ss_pred eee
Confidence 664
No 54
>PRK10139 serine endoprotease; Provisional
Probab=98.56 E-value=1.2e-07 Score=83.08 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=60.6
Q ss_pred CeEeecccccCCCccceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeC
Q psy2263 147 GQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMP 223 (232)
Q Consensus 147 g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r 223 (232)
|..+..++......+|+....|.++. |.++|||+++||++||+|++|||+++.++ +++.+.+.. .+..+.+++.|
T Consensus 270 Gv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R 347 (455)
T PRK10139 270 GIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLR 347 (455)
T ss_pred eEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 44444444444445555545677776 99999999999999999999999999998 999988875 46678888887
Q ss_pred Cccc
Q psy2263 224 SYVY 227 (232)
Q Consensus 224 ~~~~ 227 (232)
+...
T Consensus 348 ~G~~ 351 (455)
T PRK10139 348 NGKP 351 (455)
T ss_pred CCEE
Confidence 7643
No 55
>KOG3549|consensus
Probab=98.54 E-value=1.9e-07 Score=76.44 Aligned_cols=71 Identities=28% Similarity=0.483 Sum_probs=62.9
Q ss_pred cccccCCCccceEEecC------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 152 GLKNDSAGHVGFQFKRG------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 152 ~~~~~~~~~~g~~~~~g------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
.+..+.-|.+|+++++| ++++ +..+-.|+..| |..||-|+.|||..+...+|+|++++|+++++.++|+|.
T Consensus 59 tirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 59 TIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred EEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 34456678899999887 5666 88888999999 899999999999999999999999999999999999985
No 56
>PRK10942 serine endoprotease; Provisional
Probab=98.48 E-value=9.3e-07 Score=77.87 Aligned_cols=65 Identities=26% Similarity=0.434 Sum_probs=56.4
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEe
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTL 105 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l 105 (232)
.+++|..|.++|+|+++||++||+|++|||+++.++ .++.+.+...+ ..+.|++.|++..+.+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~-~~v~l~V~R~g~~~~v~~ 472 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKP-SVLALNIQRGDSSIYLLM 472 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 579999999999999999999999999999999988 56777887644 789999999888776654
No 57
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.46 E-value=3.5e-07 Score=77.70 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=53.4
Q ss_pred cceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 161 VGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 161 ~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
+|+.-..|.++. |.++|||+++||++||+|++|||+++.+. +++.+.+.. .+..+.+.+.|+...
T Consensus 272 lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 272 LGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred cCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 344333577666 99999999999999999999999999998 999988875 567789999887643
No 58
>KOG3606|consensus
Probab=98.43 E-value=7.3e-07 Score=70.61 Aligned_cols=82 Identities=27% Similarity=0.428 Sum_probs=67.9
Q ss_pred eEEEEEEe-eCCCccceEEeecC------------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 16 MTKLFLCK-DIHGKIGLRVAAIH------------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 16 ~~~~~l~~-~~~~~lGi~~~~~~------------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
-|.|+++| ....+|||.++.+. +|+||+...||+.|+..| |.++|.+++|||.++.+.+.+++.-+
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM 238 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM 238 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence 35567655 56677999998742 899999999999999999 99999999999999999998888777
Q ss_pred HhhCCCCeEEEEEecCC
Q psy2263 82 LRNCPVNNISIVVRDRP 98 (232)
Q Consensus 82 l~~~~~~~v~l~v~r~~ 98 (232)
|-++ ..++.++|+...
T Consensus 239 MvAN-shNLIiTVkPAN 254 (358)
T KOG3606|consen 239 MVAN-SHNLIITVKPAN 254 (358)
T ss_pred Hhhc-ccceEEEecccc
Confidence 7754 478888887633
No 59
>PF12812 PDZ_1: PDZ-like domain
Probab=98.43 E-value=3.3e-07 Score=60.25 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=65.2
Q ss_pred CCEEEEECCeEeecccccCCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC
Q psy2263 139 DHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPC 215 (232)
Q Consensus 139 gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~ 215 (232)
.++.+++.|..++.++++..+.+++.+. |.+++...++++...|+.+|.+|..||++++.++ +++.+.+++.++
T Consensus 4 p~r~v~~~Ga~f~~Ls~q~aR~~~~~~~-gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd 77 (78)
T PF12812_consen 4 PSRFVEVCGAVFHDLSYQQARQYGIPVG-GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKKIPD 77 (78)
T ss_pred CCEEEEEcCeecccCCHHHHHHhCCCCC-EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence 3677889999999999888888888777 7788888888888888999999999999999999 999999998765
No 60
>KOG3549|consensus
Probab=98.40 E-value=1e-06 Score=72.14 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=72.4
Q ss_pred ceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
.=|++++.+.+.|+||.++.++. -.++|+.+.++-.|+..| |-+||-|+.|||..+....|++++.++++ .|+.+
T Consensus 54 ~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeV 132 (505)
T KOG3549|consen 54 KERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEV 132 (505)
T ss_pred CceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEE
Confidence 34789999999999999998853 568999999999999999 99999999999999999999999999985 58999
Q ss_pred EEEEec
Q psy2263 91 SIVVRD 96 (232)
Q Consensus 91 ~l~v~r 96 (232)
.+++..
T Consensus 133 tlTV~~ 138 (505)
T KOG3549|consen 133 TLTVKH 138 (505)
T ss_pred EEEeHh
Confidence 998864
No 61
>KOG0609|consensus
Probab=98.38 E-value=2.7e-06 Score=73.58 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=72.3
Q ss_pred cceEEEEEEeeCCCccceEEeecCC-ceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHE-GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~-g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
..++.+.+.+..+.++|+++..... .++|..+..|+.+++.| |+.||.|.+|||.++.+.+..+++.+++... ..++
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~it 199 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GSIT 199 (542)
T ss_pred ceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-CcEE
Confidence 4477888899999999999998555 69999999999999999 9999999999999999998888888888765 6788
Q ss_pred EEEecC
Q psy2263 92 IVVRDR 97 (232)
Q Consensus 92 l~v~r~ 97 (232)
+.+...
T Consensus 200 fkiiP~ 205 (542)
T KOG0609|consen 200 FKIIPS 205 (542)
T ss_pred EEEccc
Confidence 877653
No 62
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.38 E-value=1.4e-06 Score=73.55 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=49.0
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCCc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPSY 225 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~~ 225 (232)
+.++. |.++|||+++||++||+|++|||+++.+.+..++...+.. .+..+.+++.|+.
T Consensus 63 ~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 63 EIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 34555 9999999999999999999999999999877788888765 5667888888864
No 63
>PRK10898 serine endoprotease; Provisional
Probab=98.36 E-value=9.9e-07 Score=74.95 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=50.2
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
.|.++. |.++|||+++||++||+|++|||+++.+. +++.+.+.. .+..+.|.+.|+...
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 567666 99999999999999999999999999988 888888765 556789998887643
No 64
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.35 E-value=1.2e-06 Score=71.08 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=50.7
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
.|+.+. +.++++|+++||++||+|++|||+++.+. +++.+++.+ .+..+.|++.|+...
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 356555 89999999999999999999999999998 999999887 335789999988754
No 65
>KOG3651|consensus
Probab=98.34 E-value=2.9e-06 Score=68.35 Aligned_cols=79 Identities=28% Similarity=0.452 Sum_probs=67.7
Q ss_pred EEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
-.+.+.+....-+||++.++. +.+||..|..++||++.| ++.||.|++|||.++.+-+...+.++++.. ..++.+
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~-~~eV~I 84 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS-LNEVKI 84 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh-ccceEE
Confidence 457889999999999998754 668999999999999988 999999999999999999887788888754 467777
Q ss_pred EEec
Q psy2263 93 VVRD 96 (232)
Q Consensus 93 ~v~r 96 (232)
.+..
T Consensus 85 hyNK 88 (429)
T KOG3651|consen 85 HYNK 88 (429)
T ss_pred Eehh
Confidence 7764
No 66
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.33 E-value=2.6e-06 Score=73.34 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=49.3
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCCc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPSY 225 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~~ 225 (232)
+.++. |.++|||+++||++||+|++|||+++.+++..++..+++. .+..+.|++.|+.
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 45555 9999999999999999999999999999888888888875 4557888887754
No 67
>KOG3606|consensus
Probab=98.32 E-value=3.3e-06 Score=66.99 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=54.2
Q ss_pred EecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 165 FKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 165 ~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
-..|+|++ .+||+.|+..| |-..|.+++|||..+.+.|.+++-..+-+....+.++|.+.-++
T Consensus 192 kvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR 256 (358)
T KOG3606|consen 192 KVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR 256 (358)
T ss_pred ccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence 34567888 99999999999 67799999999999999999999999998888888887665443
No 68
>KOG3834|consensus
Probab=98.31 E-value=8.8e-06 Score=68.61 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=95.7
Q ss_pred CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEec--CCceeeeEeecCCCCe-
Q psy2263 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD--RPFERNVTLHKDSAGH- 112 (232)
Q Consensus 37 ~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r--~~~~~~v~l~~~~~~~- 112 (232)
..|.-|.+|..+|+|+++| .-.=|.|++|||..+..-++ .+...++... +.+++++.. .-..+.+.+.+.....
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dnd-~Lk~llk~~s-ekVkltv~n~kt~~~R~v~I~ps~~wgg 91 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDND-TLKALLKANS-EKVKLTVYNSKTQEVRIVEIVPSNNWGG 91 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCchH-HHHHHHHhcc-cceEEEEEecccceeEEEEecccccccc
Confidence 3567788999999999999 45579999999999986544 5666676654 448888864 2344556665544332
Q ss_pred --eCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEEEccCChhhhCCCC-CCCE
Q psy2263 113 --VGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLL-TDHH 189 (232)
Q Consensus 113 --lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~-~GD~ 189 (232)
||++++- .+..+.....|. +.+|.++|||+.+||+ -+|.
T Consensus 92 qllGvsvrF-----------------------csf~~A~~~vwH---------------vl~V~p~SPaalAgl~~~~DY 133 (462)
T KOG3834|consen 92 QLLGVSVRF-----------------------CSFDGAVESVWH---------------VLSVEPNSPAALAGLRPYTDY 133 (462)
T ss_pred cccceEEEe-----------------------ccCccchhheee---------------eeecCCCCHHHhcccccccce
Confidence 4444321 112233333444 8889999999999998 4899
Q ss_pred EEEECCeEcCCCCHHHHHHHHHhCCC-eEEEEE
Q psy2263 190 ILEVNGQNVVGLKDKEIREIVEKAPC-VINLTI 221 (232)
Q Consensus 190 Il~Vng~~~~~~~~~~~~~~l~~~~~-~~~l~v 221 (232)
|+.+-..-.... +|+..+|....+ .+.|.|
T Consensus 134 ivG~~~~~~~~~--eDl~~lIeshe~kpLklyV 164 (462)
T KOG3834|consen 134 IVGIWDAVMHEE--EDLFTLIESHEGKPLKLYV 164 (462)
T ss_pred Eecchhhhccch--HHHHHHHHhccCCCcceeE
Confidence 998833333444 888888876443 455544
No 69
>KOG1892|consensus
Probab=98.29 E-value=3e-06 Score=77.53 Aligned_cols=81 Identities=28% Similarity=0.452 Sum_probs=68.3
Q ss_pred cceEEEEEEeeCCCccceEEee------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAA------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
..+.++++.|. .++|+++.. ..-|+||.+|.+|++|+..| |+.||++++|||.++.+++.+.+.++|.. .
T Consensus 932 pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr-t 1008 (1629)
T KOG1892|consen 932 PEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR-T 1008 (1629)
T ss_pred CceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc-c
Confidence 45677888888 558877754 23789999999999999888 99999999999999999999888888874 5
Q ss_pred CCeEEEEEecC
Q psy2263 87 VNNISIVVRDR 97 (232)
Q Consensus 87 ~~~v~l~v~r~ 97 (232)
+..+.+.|..+
T Consensus 1009 g~vV~leVaKq 1019 (1629)
T KOG1892|consen 1009 GNVVHLEVAKQ 1019 (1629)
T ss_pred CCeEEEehhhh
Confidence 79999988763
No 70
>KOG3552|consensus
Probab=98.28 E-value=1.2e-06 Score=79.77 Aligned_cols=68 Identities=25% Similarity=0.447 Sum_probs=58.4
Q ss_pred cCCCccceEEecC--cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 156 DSAGHVGFQFKRG--QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 156 ~~~~~~g~~~~~g--~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
+....+||+|..| ++++ |.+|+|+. ..|+|||+|+.|||.+++...++-++++++.....+.|+|++.
T Consensus 62 ~r~~~lGFgfvagrPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 62 QRNASLGFGFVAGRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred hccccccceeecCCceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 4456789999866 3444 99999863 3499999999999999999999999999999999999999875
No 71
>KOG3129|consensus
Probab=98.20 E-value=1.2e-05 Score=61.61 Aligned_cols=71 Identities=24% Similarity=0.167 Sum_probs=57.1
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHH-hhCCCCeEEEEEecCCceeeeEeecC
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL-RNCPVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l-~~~~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
..++|..|.|+|||+.+||+.||.|+++.++.--++..-+..... +...+..+.+++.|.+....+.+.+.
T Consensus 139 ~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~ 210 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPK 210 (231)
T ss_pred ceEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcc
Confidence 467899999999999999999999999998887777542333333 33347899999999999988888775
No 72
>KOG1892|consensus
Probab=98.19 E-value=2.7e-06 Score=77.84 Aligned_cols=69 Identities=19% Similarity=0.498 Sum_probs=59.9
Q ss_pred CccceEEe---------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC-cc
Q psy2263 159 GHVGFQFK---------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS-YV 226 (232)
Q Consensus 159 ~~~g~~~~---------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~-~~ 226 (232)
...|+++. -|+++. |++|++|+..| |.+||++|.|||..+.+++.+.+.+++...++.|+|.|... ..
T Consensus 943 nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 943 NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAI 1022 (1629)
T ss_pred CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhH
Confidence 56677763 267777 99999999999 99999999999999999999999999999999999999743 34
Q ss_pred c
Q psy2263 227 Y 227 (232)
Q Consensus 227 ~ 227 (232)
|
T Consensus 1023 y 1023 (1629)
T KOG1892|consen 1023 Y 1023 (1629)
T ss_pred H
Confidence 4
No 73
>KOG3571|consensus
Probab=98.17 E-value=5.9e-06 Score=70.86 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=68.9
Q ss_pred ceEEEEEEeeCCCccceEEee-----cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC--
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAA-----IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-- 86 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~-----~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-- 86 (232)
.+.+|+|-......|||++.+ ++.|+||.++.++++.+..| +.+||.|+.||.++.++++..++++.|+...
T Consensus 249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 346677766667889999988 67999999999999877767 9999999999999999999999999998754
Q ss_pred CCeEEEEEec
Q psy2263 87 VNNISIVVRD 96 (232)
Q Consensus 87 ~~~v~l~v~r 96 (232)
..++.+++..
T Consensus 329 ~gPi~ltvAk 338 (626)
T KOG3571|consen 329 PGPIKLTVAK 338 (626)
T ss_pred CCCeEEEEee
Confidence 3457777765
No 74
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=4.8e-06 Score=71.85 Aligned_cols=55 Identities=20% Similarity=0.420 Sum_probs=49.7
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCC
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPS 224 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~ 224 (232)
+++..+++||+++|+++||.|+.|||.++.+++.++++..++. .+..++|++.|.
T Consensus 116 V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 116 VVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred EEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 5559999999999999999999999999999999999999987 455699999986
No 75
>KOG3651|consensus
Probab=98.11 E-value=1.1e-05 Score=65.13 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=56.9
Q ss_pred CCCccceEEecC-------cEEEEccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 157 SAGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~g-------~v~~v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
.+.-.|+++.+| .++.|..++||++.| ++.||.|+.|||..+++-|.-++.++++..-+++.+.+.
T Consensus 14 ~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyN 87 (429)
T KOG3651|consen 14 EKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYN 87 (429)
T ss_pred cccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEeh
Confidence 344567777765 577799999999999 999999999999999999999999999998888888763
No 76
>KOG3552|consensus
Probab=98.07 E-value=5.9e-06 Score=75.42 Aligned_cols=87 Identities=28% Similarity=0.360 Sum_probs=68.9
Q ss_pred CCCcccccccceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 5 YPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
.|.....-.+.+|++.+.+.+.-+|||. .+ ..++|..|.+|+|+.. .|++||+|++|||.+++....+.++.+++.
T Consensus 45 ~~~~~~~i~~~pr~vq~~r~~~lGFgfv--ag-rPviVr~VT~GGps~G-KL~PGDQIl~vN~Epv~daprervIdlvRa 120 (1298)
T KOG3552|consen 45 TYEAPECIRWEPRQVQLQRNASLGFGFV--AG-RPVIVRFVTEGGPSIG-KLQPGDQILAVNGEPVKDAPRERVIDLVRA 120 (1298)
T ss_pred CcCCCccccCcchhhhhhccccccceee--cC-CceEEEEecCCCCccc-cccCCCeEEEecCcccccccHHHHHHHHHH
Confidence 3444444455688888888755555554 33 6889999999999976 499999999999999999999889999988
Q ss_pred CCCCeEEEEEec
Q psy2263 85 CPVNNISIVVRD 96 (232)
Q Consensus 85 ~~~~~v~l~v~r 96 (232)
+. ..+.|+|++
T Consensus 121 ce-~sv~ltV~q 131 (1298)
T KOG3552|consen 121 CE-SSVNLTVCQ 131 (1298)
T ss_pred Hh-hhcceEEec
Confidence 74 778888886
No 77
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3e-05 Score=65.91 Aligned_cols=84 Identities=30% Similarity=0.416 Sum_probs=64.8
Q ss_pred eeCCCccceEEee----------cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEE
Q psy2263 23 KDIHGKIGLRVAA----------IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNIS 91 (232)
Q Consensus 23 ~~~~~~lGi~~~~----------~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~ 91 (232)
+..++++|+.... ...|.+|..|.+++||+++|++.||.|+++||.++.+.. +....+... ++..+.
T Consensus 245 ~v~~~~lgv~~~~~~~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~--~l~~~v~~~~~g~~v~ 322 (347)
T COG0265 245 KVVRGYLGVIGEPLTADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLS--DLVAAVASNRPGDEVA 322 (347)
T ss_pred CccccccceEEEEcccccccCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHH--HHHHHHhccCCCCEEE
Confidence 3445666665542 235789999999999999999999999999999999874 455544443 588999
Q ss_pred EEEecCCceeeeEeecC
Q psy2263 92 IVVRDRPFERNVTLHKD 108 (232)
Q Consensus 92 l~v~r~~~~~~v~l~~~ 108 (232)
+.+.|++++.++.+...
T Consensus 323 ~~~~r~g~~~~~~v~l~ 339 (347)
T COG0265 323 LKLLRGGKERELAVTLG 339 (347)
T ss_pred EEEEECCEEEEEEEEec
Confidence 99999988877766543
No 78
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.99 E-value=2.7e-05 Score=67.55 Aligned_cols=75 Identities=25% Similarity=0.241 Sum_probs=59.5
Q ss_pred CCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeE
Q psy2263 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVT 104 (232)
Q Consensus 25 ~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~ 104 (232)
+..|||+.+....++..|..|.++|||..|||.+||+|++|||.+-. ..+...+..+.+.+.|++.-++..
T Consensus 449 ~~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~---------l~~~~~~d~i~v~~~~~~~L~e~~ 519 (558)
T COG3975 449 EAYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ---------LDRYKVNDKIQVHVFREGRLREFL 519 (558)
T ss_pred CCcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCcccc---------ccccccccceEEEEccCCceEEee
Confidence 34589999998888899999999999999999999999999998111 111234688899998888777765
Q ss_pred eecC
Q psy2263 105 LHKD 108 (232)
Q Consensus 105 l~~~ 108 (232)
+...
T Consensus 520 v~~~ 523 (558)
T COG3975 520 VKLG 523 (558)
T ss_pred cccC
Confidence 5444
No 79
>KOG3571|consensus
Probab=97.97 E-value=1.5e-05 Score=68.53 Aligned_cols=66 Identities=18% Similarity=0.363 Sum_probs=56.5
Q ss_pred CCccceEEe--------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHh---CCCeEEEEEeC
Q psy2263 158 AGHVGFQFK--------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK---APCVINLTIMP 223 (232)
Q Consensus 158 ~~~~g~~~~--------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~---~~~~~~l~v~r 223 (232)
-..||+++. +|+++. +.++++.+.+| +.+||.||.||..++.+++.+|+++.|+. .+.+++|+|..
T Consensus 260 vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 260 VNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred cccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence 345788874 468888 99999999998 99999999999999999999999999986 56678888864
No 80
>KOG3542|consensus
Probab=97.95 E-value=2e-05 Score=70.09 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=68.3
Q ss_pred cccceEEEEEEee-CCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 12 KYHQMTKLFLCKD-IHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 12 ~~~~~~~~~l~~~-~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
++...|++.+.+. ...++-+.+.++. -|+||..|.|++.|+++||+.||+|++|||+..++++..-+..+++. .
T Consensus 532 aKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrn--n 609 (1283)
T KOG3542|consen 532 AKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRN--N 609 (1283)
T ss_pred hcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcC--C
Confidence 4566789999884 4456888887643 67999999999999999999999999999999999988778888875 4
Q ss_pred CeEEEEEec
Q psy2263 88 NNISIVVRD 96 (232)
Q Consensus 88 ~~v~l~v~r 96 (232)
..+.+++.-
T Consensus 610 thLtltvKt 618 (1283)
T KOG3542|consen 610 THLTLTVKT 618 (1283)
T ss_pred ceEEEEEec
Confidence 667777764
No 81
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.94 E-value=2.8e-05 Score=70.84 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=44.9
Q ss_pred EEEEccCChhhhC-CCCCCCEEEEEC--Ce---EcCCCCHHHHHHHHHh-CCCeEEEEEeC
Q psy2263 170 IIRLVKESSASRN-GLLTDHHILEVN--GQ---NVVGLKDKEIREIVEK-APCVINLTIMP 223 (232)
Q Consensus 170 v~~v~~~s~a~~~-Gl~~GD~Il~Vn--g~---~~~~~~~~~~~~~l~~-~~~~~~l~v~r 223 (232)
|+.+.|||||+++ ||++||+|++|| |. ++.+++.++++.+|+. .+..+.|++.|
T Consensus 259 V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 259 INSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred EEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 4459999999998 899999999999 43 5567778899999986 55569998876
No 82
>KOG1421|consensus
Probab=97.92 E-value=8.6e-05 Score=66.22 Aligned_cols=139 Identities=21% Similarity=0.208 Sum_probs=89.5
Q ss_pred ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecCCCCeeC-eEE
Q psy2263 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVG-FQF 117 (232)
Q Consensus 39 g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~~~~~lg-~~~ 117 (232)
-++|+.|.+.-+ +- |..||.|+++||+.+..+++ +.. + ..+...+.|++.+.++.+..-+..... +-.
T Consensus 772 l~~ishv~~~~~--ki-l~~gdiilsvngk~itr~~d--l~d-~-----~eid~~ilrdg~~~~ikipt~p~~et~r~vi 840 (955)
T KOG1421|consen 772 LYVISHVRPLLH--KI-LGVGDIILSVNGKMITRLSD--LHD-F-----EEIDAVILRDGIEMEIKIPTYPEYETSRAVI 840 (955)
T ss_pred EEEEEeeccCcc--cc-cccccEEEEecCeEEeeehh--hhh-h-----hhhheeeeecCcEEEEEeccccccccceEEE
Confidence 356788877664 33 99999999999999998865 332 1 267788889998888877654432100 000
Q ss_pred eCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCe
Q psy2263 118 KRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQ 196 (232)
Q Consensus 118 ~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~ 196 (232)
-.|.+.. +...|-. .+..|. -.|+++. .-.||||.. +|++-.+|+.|||.
T Consensus 841 ~~gailq--~ph~av~--~q~edl------------------------p~gvyvt~rg~gspalq-~l~aa~fitavng~ 891 (955)
T KOG1421|consen 841 WMGAILQ--PPHSAVF--EQVEDL------------------------PEGVYVTSRGYGSPALQ-MLRAAHFITAVNGH 891 (955)
T ss_pred EEecccc--CchHHHH--HHHhcc------------------------CCceEEeecccCChhHh-hcchheeEEEeccc
Confidence 0011000 0000000 000111 1344555 778999988 99999999999999
Q ss_pred EcCCCCHHHHHHHHHhCCCeEEE
Q psy2263 197 NVVGLKDKEIREIVEKAPCVINL 219 (232)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~l 219 (232)
.+.++ +++.+.++..+..-.+
T Consensus 892 ~t~~l--ddf~~~~~~ipdnsyv 912 (955)
T KOG1421|consen 892 DTNTL--DDFYHMLLEIPDNSYV 912 (955)
T ss_pred ccCcH--HHHHHHHhhCCCCceE
Confidence 99999 9999999887665333
No 83
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.90 E-value=1.9e-05 Score=67.81 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=40.6
Q ss_pred EEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 172 RLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 172 ~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
.|.|+|+|+++||++||+|++|||+++.++ .++...+. +..+.+.+.
T Consensus 4 ~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 4 AVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFLCA--DEELELEVL 50 (433)
T ss_pred CcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHhc--CCcEEEEEE
Confidence 488999999999999999999999999988 88877774 356777775
No 84
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.84 E-value=0.00011 Score=49.25 Aligned_cols=48 Identities=25% Similarity=0.218 Sum_probs=34.4
Q ss_pred ChhhhCC--CCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCCcc
Q psy2263 177 SSASRNG--LLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPSYV 226 (232)
Q Consensus 177 s~a~~~G--l~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~~~ 226 (232)
||-...| +++||.|++|||+++... .+...+|.. ++.++.|++.++..
T Consensus 31 sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 31 SPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp -GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-STT
T ss_pred CCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCCC
Confidence 6777777 679999999999999987 788888876 55679999987663
No 85
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.81 E-value=4.4e-05 Score=65.17 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=43.6
Q ss_pred CChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCccc
Q psy2263 176 ESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSYVY 227 (232)
Q Consensus 176 ~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~~~ 227 (232)
+|||+.+||++||+|++|||.++.++ +|+.++++.. +..+.|.+.|+...
T Consensus 123 ~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~ 173 (402)
T TIGR02860 123 HSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKI 173 (402)
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEE
Confidence 58999999999999999999999998 9999999874 45788888887643
No 86
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.81 E-value=8.3e-05 Score=54.42 Aligned_cols=63 Identities=22% Similarity=0.409 Sum_probs=44.2
Q ss_pred CCccceEEe---------cC-cEEEEccCChhhhCCCCC-CCEEEEECCeEcCCCCHHHHHHHHHhCC-CeEEEEEe
Q psy2263 158 AGHVGFQFK---------RG-QIIRLVKESSASRNGLLT-DHHILEVNGQNVVGLKDKEIREIVEKAP-CVINLTIM 222 (232)
Q Consensus 158 ~~~~g~~~~---------~g-~v~~v~~~s~a~~~Gl~~-GD~Il~Vng~~~~~~~~~~~~~~l~~~~-~~~~l~v~ 222 (232)
.+.+|++++ .+ +|..|.|+|||+.+||++ .|.|+.+++..+.+. +++.+.+++.. .++.|.|-
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vy 99 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVY 99 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEE
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEE
Confidence 356677663 12 577799999999999999 699999999999977 99999998744 45777764
No 87
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.75 E-value=0.00025 Score=57.59 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=47.7
Q ss_pred EecCCC---HHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEecCCceeeeEee
Q psy2263 44 LVQEGS---PAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVRDRPFERNVTLH 106 (232)
Q Consensus 44 ~V~~~s---~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~v~r~~~~~~v~l~ 106 (232)
.+.|+. ...++||+.||.+++|||.++.+. .+..+++..-. .+++.|+|.|+++..++.+.
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~ 274 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARHDISIA 274 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEEEEEEE
Confidence 455653 356899999999999999999976 45666665433 68999999999998887653
No 88
>KOG1320|consensus
Probab=97.75 E-value=0.00014 Score=63.07 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=90.0
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHH-----HHh-hCCCCeEEEEEecCCceeeeEeecCCC-
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHA-----LLR-NCPVNNISIVVRDRPFERNVTLHKDSA- 110 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~-----~l~-~~~~~~v~l~v~r~~~~~~v~l~~~~~- 110 (232)
.|..+..+.+-+.|.+. +..||.|+.++|..+--. ..-..+ .+. ..+.+++.+.+.|.. ++...+.+...
T Consensus 287 ~g~~i~~~~qtd~ai~~-~nsg~~ll~~DG~~IgVn-~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~-e~~~~lr~~~~~ 363 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP-GNSGGPLLNLDGEVIGVN-TRKVTRIGFSHGISFKIPIDTVLVIVLRLG-EFQISLRPVKPL 363 (473)
T ss_pred cceeeeeecccchhhhc-ccCCCcEEEecCcEeeee-eeeeEEeeccccceeccCchHhhhhhhhhh-hhceeeccccCc
Confidence 34788889888888874 899999999999998421 101110 111 123445555555543 33333322111
Q ss_pred ----CeeCe---EEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEE-EccCChhhhC
Q psy2263 111 ----GHVGF---QFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRN 182 (232)
Q Consensus 111 ----~~lg~---~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~ 182 (232)
.+.|. .+..+.+......++....+. ..+.+++ |.|++++..+
T Consensus 364 ~p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~-----------------------------~q~v~is~Vlp~~~~~~~ 414 (473)
T KOG1320|consen 364 VPVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGV-----------------------------VQLVLVSQVLPGSINGGY 414 (473)
T ss_pred ccccccCCceeEEEecceEEeecCCCccccccc-----------------------------eeEEEEEEeccCCCcccc
Confidence 11221 222333332222222111110 1233555 9999999999
Q ss_pred CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC--eEEEEEeCC
Q psy2263 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPC--VINLTIMPS 224 (232)
Q Consensus 183 Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~--~~~l~v~r~ 224 (232)
++++||+|+.|||+++.++ .++..+++.... .+.+...|.
T Consensus 415 ~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 415 GLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred cccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecC
Confidence 9999999999999999999 999999987543 455544444
No 89
>KOG3938|consensus
Probab=97.74 E-value=7.3e-05 Score=59.35 Aligned_cols=80 Identities=23% Similarity=0.428 Sum_probs=65.3
Q ss_pred cceEEEEEEeeCCCccceEEeecCCc-eEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHEG-VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~g-~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v 90 (232)
.+.+++.+.|.... ||+++..+.-| .||..+.++|..++-. +++||.|-+|||.++.++.|.++.++|+..+ ++..
T Consensus 125 Gq~kEv~v~Kseda-lGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 125 GQAKEVEVVKSEDA-LGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF 203 (334)
T ss_pred CcceeEEEEecccc-cceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence 34567788888766 99999987655 6899999999988655 9999999999999999999999999999765 4444
Q ss_pred EEEE
Q psy2263 91 SIVV 94 (232)
Q Consensus 91 ~l~v 94 (232)
++.+
T Consensus 204 tlrL 207 (334)
T KOG3938|consen 204 TLRL 207 (334)
T ss_pred EEEe
Confidence 4433
No 90
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00033 Score=59.55 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=53.3
Q ss_pred cceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 161 VGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 161 ~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
+|+....|.++. +.+++||+++|+++||+|+++||.++.+. .++...+.. .+..+.+.+.|+..
T Consensus 264 ~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 264 LGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred cCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence 555555676666 99999999999999999999999999998 888888765 45678898888743
No 91
>KOG4371|consensus
Probab=97.52 E-value=0.0004 Score=64.59 Aligned_cols=169 Identities=21% Similarity=0.347 Sum_probs=104.3
Q ss_pred EEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCc
Q psy2263 20 FLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 20 ~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 99 (232)
.+.+.+ +.||..+........++...-.+.-..-.|++||.++.+||..+..--+..++.+++. .++.+.|-+.|.+.
T Consensus 1152 ~~~r~~-~~l~~~~a~~~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~ 1229 (1332)
T KOG4371|consen 1152 ELDRNE-GSLGVQIASLSGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRG-GGDRVVLGVQRPPP 1229 (1332)
T ss_pred cCCCCC-CCCCceeccCccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhc-cCceEEEEeecCCc
Confidence 345555 6699998876666667655544433344599999999999999988766566666664 47889998888432
Q ss_pred ee-eeEeecCC--CCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceE-----EecCcEE
Q psy2263 100 ER-NVTLHKDS--AGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQ-----FKRGQII 171 (232)
Q Consensus 100 ~~-~v~l~~~~--~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~-----~~~g~v~ 171 (232)
.. ...+.... ...| .....+.+.+ ..+|+. +.+|+++
T Consensus 1230 ~~~d~~~~s~~~~~~~l---~~~~~~~~p~--------------------------------~~~~~~~~~~~~s~~~~~ 1274 (1332)
T KOG4371|consen 1230 AYSDQHHASSTSASAPL---ISVMLLKKPM--------------------------------ATLGLSLAKRTMSDGIFI 1274 (1332)
T ss_pred ccccchhhhhhcccchh---hhheeeeccc--------------------------------ccccccccccCcCCceee
Confidence 21 11111000 0000 0000000000 011111 1356677
Q ss_pred E-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 172 R-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 172 ~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
. +...+.|...| +++||++...+|+++.+.+-....+.++-.-+++.+.+.|..
T Consensus 1275 ~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~q 1330 (1332)
T KOG4371|consen 1275 RNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTREQ 1330 (1332)
T ss_pred ecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhhh
Confidence 7 44556666666 999999999999999999888888777766667777666543
No 92
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.00084 Score=54.99 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=58.2
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEec-CCc--eeeeEeecC-C--C
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRD-RPF--ERNVTLHKD-S--A 110 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r-~~~--~~~v~l~~~-~--~ 110 (232)
.|+|+..+..++||.. -|+.||.|++|||+++.+. .++..+++.. +|+++++.+.| ++. ..++++.+. . .
T Consensus 130 ~gvyv~~v~~~~~~~g-kl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~ 206 (342)
T COG3480 130 AGVYVLSVIDNSPFKG-KLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGK 206 (342)
T ss_pred eeEEEEEccCCcchhc-eeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeeccCCc
Confidence 7899999999999876 4999999999999999976 5677777655 59999999997 433 344444433 2 2
Q ss_pred CeeCeEEe
Q psy2263 111 GHVGFQFK 118 (232)
Q Consensus 111 ~~lg~~~~ 118 (232)
.-+|+++.
T Consensus 207 ~giGIsl~ 214 (342)
T COG3480 207 AGIGISLV 214 (342)
T ss_pred ceeeeEee
Confidence 34566554
No 93
>KOG3542|consensus
Probab=97.42 E-value=0.00013 Score=64.99 Aligned_cols=56 Identities=32% Similarity=0.493 Sum_probs=48.2
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~ 213 (232)
..++-|.+.+ |+++. |.||+.|++.||+.||+|++|||++..+++...+.++|...
T Consensus 547 e~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn 609 (1283)
T KOG3542|consen 547 EDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN 609 (1283)
T ss_pred cCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC
Confidence 4456666643 47777 99999999999999999999999999999999999999874
No 94
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.36 E-value=0.00061 Score=55.41 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=44.6
Q ss_pred EccCChh---hhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCC--CeEEEEEeCCccccc
Q psy2263 173 LVKESSA---SRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP--CVINLTIMPSYVYHH 229 (232)
Q Consensus 173 v~~~s~a---~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~--~~~~l~v~r~~~~~~ 229 (232)
+.|+..+ ...||++||++++|||.++.+. +++.+++++.. ..++|+|.|+.....
T Consensus 211 l~Pgkd~~lF~~~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~~ 270 (276)
T PRK09681 211 VKPGADRSLFDASGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARHD 270 (276)
T ss_pred ECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence 6677543 5579999999999999999998 88888888743 469999999886543
No 95
>KOG0609|consensus
Probab=97.34 E-value=0.00085 Score=58.54 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=62.8
Q ss_pred cccccCCCccceEEec----CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 152 GLKNDSAGHVGFQFKR----GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 152 ~~~~~~~~~~g~~~~~----g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
.+......++|..++. -+++. +..|+.+.+.| |+.||.|++|||.++.+.+-+++..+|+...+.+++.+.+..
T Consensus 127 ~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~ 206 (542)
T KOG0609|consen 127 RIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSY 206 (542)
T ss_pred EEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEcccc
Confidence 3444456678888852 25666 99999999999 899999999999999999999999999999899999998774
Q ss_pred c
Q psy2263 226 V 226 (232)
Q Consensus 226 ~ 226 (232)
.
T Consensus 207 ~ 207 (542)
T KOG0609|consen 207 R 207 (542)
T ss_pred c
Confidence 3
No 96
>KOG3605|consensus
Probab=97.07 E-value=0.00079 Score=59.88 Aligned_cols=67 Identities=27% Similarity=0.554 Sum_probs=53.2
Q ss_pred EEEEEEe-eCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 17 TKLFLCK-DIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 17 ~~~~l~~-~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
-+|.|.| ..+..|||++.. | +|-++..|++|++-|+++|.+|++|||+++-...|+-.+.+|....|
T Consensus 738 ~~V~I~RPd~kyQLGFSVQN---G-iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 738 TTVLIRRPDLRYQLGFSVQN---G-IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred eEEEeecccchhhccceeeC---c-EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 4455555 344559999765 4 45579999999999999999999999999999999888888876443
No 97
>KOG1320|consensus
Probab=97.05 E-value=0.0025 Score=55.56 Aligned_cols=68 Identities=26% Similarity=0.438 Sum_probs=55.8
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEecCCceeeeEeec
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~v~r~~~~~~v~l~~ 107 (232)
.++++..|.|++++...++..||+|++|||+++.+.. .+...+..+. .+.+.+..+|..+..++.+.+
T Consensus 398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~--~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~ 466 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLK--HLYELIEECSTEDKVAVLDRRSAEDATLEILP 466 (473)
T ss_pred eEEEEEEeccCCCcccccccCCCEEEEECCEEeechH--HHHHHHHhcCcCceEEEEEecCccceeEEecc
Confidence 3688999999999999999999999999999999984 5777887764 567777777777776766544
No 98
>KOG3129|consensus
Probab=97.05 E-value=0.0019 Score=49.81 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=39.0
Q ss_pred EEE-EccCChhhhCCCCCCCEEEEECCeEcCCCC-HHHHHHHHHh-CCCeEEEEEeCCcc
Q psy2263 170 IIR-LVKESSASRNGLLTDHHILEVNGQNVVGLK-DKEIREIVEK-APCVINLTIMPSYV 226 (232)
Q Consensus 170 v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~-~~~~~~~l~~-~~~~~~l~v~r~~~ 226 (232)
+++ |.|+|||+.+||+.||.|+.+.+..-.+.. ...+....+. -+..+.+.+.|...
T Consensus 142 ~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~ 201 (231)
T KOG3129|consen 142 VVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ 201 (231)
T ss_pred EEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence 555 999999999999999999999887766552 2333333333 33346666665543
No 99
>KOG0606|consensus
Probab=97.00 E-value=0.0013 Score=61.94 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=51.0
Q ss_pred EEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 170 IIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 170 v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
++. |.+++||..+|+++||.|+.|||.++.++.|.+++++|-+.++.+.+.+..-.
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttple 717 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTPLE 717 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeeccc
Confidence 444 99999999999999999999999999999999999999999999998886543
No 100
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.97 E-value=0.0018 Score=56.58 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.5
Q ss_pred CccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCe
Q psy2263 159 GHVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQ 196 (232)
Q Consensus 159 ~~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~ 196 (232)
..+|+.+. ++.++. |.++|||..+||.+||.|++|||.
T Consensus 451 ~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred cccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 35666664 234666 999999999999999999999999
No 101
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0032 Score=49.54 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred EEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEecCCceeeeEe
Q psy2263 42 VCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVRDRPFERNVTL 105 (232)
Q Consensus 42 V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~v~r~~~~~~v~l 105 (232)
+.-.-+++.....||+.||..+++|+.++.+. ++..++++... -+++.+++.|++..+.+.+
T Consensus 211 ~~pgkd~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~rhdInV 273 (275)
T COG3031 211 FEPGKDGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKRHDINV 273 (275)
T ss_pred ecCCCCcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence 33445556778889999999999999999875 45666665543 5789999999998877765
No 102
>KOG3532|consensus
Probab=96.89 E-value=0.004 Score=55.91 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=55.1
Q ss_pred EEeeCCCccceEEeecC-CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 21 LCKDIHGKIGLRVAAIH-EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 21 l~~~~~~~lGi~~~~~~-~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.++....++|+-+..+. ..+-|..|.+|++|.++.+.+||++++|||.++.+. .+..+.++...++...|.+
T Consensus 380 ~~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~ 452 (1051)
T KOG3532|consen 380 SRYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVE 452 (1051)
T ss_pred ccccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEe
Confidence 35556677998887754 446689999999999999999999999999999875 4677777765444444433
No 103
>KOG3532|consensus
Probab=96.71 E-value=0.0045 Score=55.64 Aligned_cols=67 Identities=9% Similarity=0.232 Sum_probs=54.3
Q ss_pred CCCccceEEec-C-c---EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 157 SAGHVGFQFKR-G-Q---IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 157 ~~~~~g~~~~~-g-~---v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..-++|+-|+. | . +.+|.++++|.++-+++||++++|||+++.+. .++.+.++.....+...+.|+.
T Consensus 384 ~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 384 VSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVERSL 455 (1051)
T ss_pred ccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEeecc
Confidence 34568888862 2 2 44488999999999999999999999999988 9999999998777776666544
No 104
>KOG3834|consensus
Probab=96.64 E-value=0.019 Score=49.02 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=76.4
Q ss_pred cccccceEEEEEEeeCCCc---cceEEeecC------CceEEEEecCCCHHhhcCCC-CCCEEEEE-CCeeCCCCCHHHH
Q psy2263 10 DMKYHQMTKLFLCKDIHGK---IGLRVAAIH------EGVFVCLVQEGSPAALVGLR-FGDQILQV-NGKTVAGSNMHQV 78 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~---lGi~~~~~~------~g~~V~~V~~~s~A~~agL~-~GD~I~~V-ng~~v~~~~~~~~ 78 (232)
+++...+|.+.+.+....+ ||+.++... .-+-|-+|.++|||+.|||+ -+|.|+-+ |.+.- . .+++
T Consensus 72 n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~-~--~eDl 148 (462)
T KOG3834|consen 72 NSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH-E--EEDL 148 (462)
T ss_pred ecccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc-c--hHHH
Confidence 5566777888887765555 898887633 33567799999999999988 89999988 55433 2 3578
Q ss_pred HHHHhhCCCCeEEEEEec--CCceeeeEeecCC----CCeeCeEEeCCe
Q psy2263 79 HALLRNCPVNNISIVVRD--RPFERNVTLHKDS----AGHVGFQFKRGQ 121 (232)
Q Consensus 79 ~~~l~~~~~~~v~l~v~r--~~~~~~v~l~~~~----~~~lg~~~~~~~ 121 (232)
...+....++.+++.+.- ....+.+++.++. ++.+|..+..|.
T Consensus 149 ~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~lGCgIG~Gy 197 (462)
T KOG3834|consen 149 FTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGALGCGIGYGY 197 (462)
T ss_pred HHHHHhccCCCcceeEeecCCCccceEEeeccccccccceeccccccee
Confidence 888877778888887753 4556777777543 345555444343
No 105
>KOG0606|consensus
Probab=96.58 E-value=0.0075 Score=57.10 Aligned_cols=75 Identities=33% Similarity=0.387 Sum_probs=57.6
Q ss_pred EEEEeeCCCccceEEeec-----CC-----ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 19 LFLCKDIHGKIGLRVAAI-----HE-----GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 19 ~~l~~~~~~~lGi~~~~~-----~~-----g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
+.+.+.. ..+||++... .. ...|..|.+++||..+|++.+|.|+.+||.++.+..+.++...+-. .++
T Consensus 630 I~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~-~gn 707 (1205)
T KOG0606|consen 630 ITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLK-SGN 707 (1205)
T ss_pred eeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHh-cCC
Confidence 3444443 3488877652 22 3678899999999999999999999999999999999888887763 366
Q ss_pred eEEEEEe
Q psy2263 89 NISIVVR 95 (232)
Q Consensus 89 ~v~l~v~ 95 (232)
.+.+.+.
T Consensus 708 ~v~~~tt 714 (1205)
T KOG0606|consen 708 KVTLRTT 714 (1205)
T ss_pred eeEEEee
Confidence 6666554
No 106
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.58 E-value=0.0044 Score=48.80 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=44.3
Q ss_pred ccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC--eEEEEEeCCccccc
Q psy2263 174 VKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPC--VINLTIMPSYVYHH 229 (232)
Q Consensus 174 ~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~--~~~l~v~r~~~~~~ 229 (232)
.+++.-+..||+.||+.+++|+.++++. +++.++++...+ .+.|++.|+..++.
T Consensus 215 kd~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~rhd 270 (275)
T COG3031 215 KDGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKRHD 270 (275)
T ss_pred CCcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCccce
Confidence 3445667789999999999999999998 999999987554 48888888887553
No 107
>KOG3938|consensus
Probab=96.56 E-value=0.0076 Score=48.17 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=45.7
Q ss_pred EEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEe-CCccc
Q psy2263 170 IIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIM-PSYVY 227 (232)
Q Consensus 170 v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~-r~~~~ 227 (232)
|+. +.++|.-++-- ++.||.|-+|||+.+-+..|.|+.+.|+. .++..+|.+. ++..+
T Consensus 152 FIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~af 214 (334)
T KOG3938|consen 152 FIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKSAF 214 (334)
T ss_pred eeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeecccccc
Confidence 555 77788766654 89999999999999999999999999998 4556666654 44443
No 108
>PF12812 PDZ_1: PDZ-like domain
Probab=96.35 E-value=0.018 Score=37.78 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=37.8
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
.+.++.....++++...++..|..|.+||++++.++ +++.+.++..+
T Consensus 30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 345555678888888766999999999999999988 56888887654
No 109
>KOG1738|consensus
Probab=95.10 E-value=0.047 Score=48.86 Aligned_cols=63 Identities=29% Similarity=0.377 Sum_probs=52.6
Q ss_pred eCCCccceEEeec-CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 24 DIHGKIGLRVAAI-HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 24 ~~~~~lGi~~~~~-~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
.+..++|+.+... ++-++|..+.+++||+... +..||.++.||+..+.+|+...+++-+...+
T Consensus 210 kp~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~ 274 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETP 274 (638)
T ss_pred CcccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCc
Confidence 4566788888663 4567899999999999877 9999999999999999998877777777654
No 110
>KOG1738|consensus
Probab=95.01 E-value=0.034 Score=49.73 Aligned_cols=67 Identities=24% Similarity=0.381 Sum_probs=55.2
Q ss_pred ccceEEe----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 160 HVGFQFK----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 160 ~~g~~~~----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.+|+.+. +-++++ +.+++||.+.+ |..||.++.||++.+.+.+++-+++.|...+..+.+++.....
T Consensus 214 glg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 214 GLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPV 286 (638)
T ss_pred CCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCC
Confidence 3566553 335677 99999998876 9999999999999999999999999999988888888764443
No 111
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.52 E-value=0.14 Score=42.34 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=44.0
Q ss_pred cEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCc
Q psy2263 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSY 225 (232)
Q Consensus 169 ~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~ 225 (232)
.++.+..++|+. .-|.+||.|++|||+++.+. +|+...++. .++.+++...|..
T Consensus 133 yv~~v~~~~~~~-gkl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 133 YVLSVIDNSPFK-GKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred EEEEccCCcchh-ceeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEecc
Confidence 355577777753 33999999999999999999 999999975 6778999988644
No 112
>KOG4407|consensus
Probab=94.48 E-value=0.024 Score=54.54 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=77.9
Q ss_pred cCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHH
Q psy2263 127 KESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKE 205 (232)
Q Consensus 127 ~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~ 205 (232)
.+.++..+|+..++.+..|+|..+...+ .-.++-+.-...+|+. |.+++||-.+-|+.||+++.||..++.++.-.+
T Consensus 105 s~~~~~nsG~~s~~~v~~itG~e~~~~T--S~~~~~vk~~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~ 182 (1973)
T KOG4407|consen 105 SSAAGSNSGSSSSVGVAGITGLEPTSPT--SLPPYQVKAMETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYST 182 (1973)
T ss_pred ccCcccccCcccccceeeecccccCCCc--cccHHHHhhhhhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhh
Confidence 3456778899999999999998775544 1122222223446666 999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEeCCcc
Q psy2263 206 IREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 206 ~~~~l~~~~~~~~l~v~r~~~ 226 (232)
++..+++.+....+.|.++.+
T Consensus 183 ~~S~~~qt~~~~~~~~~P~~~ 203 (1973)
T KOG4407|consen 183 IVSMIKQTPAVLTLHVVPKEC 203 (1973)
T ss_pred hhhhhccCCCCCCceeccccC
Confidence 999999998888888887764
No 113
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=94.30 E-value=0.17 Score=43.38 Aligned_cols=58 Identities=36% Similarity=0.419 Sum_probs=43.8
Q ss_pred EEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe---EEEEEec-CCce
Q psy2263 41 FVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN---ISIVVRD-RPFE 100 (232)
Q Consensus 41 ~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~---v~l~v~r-~~~~ 100 (232)
.+..+..+++|+.++++.||+++++|+.++.+++ +..+.+....+.. +.+.+.| ++..
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 193 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWD--DVRRLLVAAAGDVFNLLTILVIRLDGEA 193 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHH--HHHHHHHhccCCcccceEEEEEecccee
Confidence 3446899999999999999999999999999984 4555554444444 7777777 4443
No 114
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=91.63 E-value=0.43 Score=40.92 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=41.0
Q ss_pred EEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCe---EEEEEeC
Q psy2263 172 RLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCV---INLTIMP 223 (232)
Q Consensus 172 ~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~---~~l~v~r 223 (232)
.+..+++|+.+|+++||+|+++|+.++.+. +++...+.. .+.. +.+.+.|
T Consensus 135 ~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 135 EVAPKSAAALAGLRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred ecCCCCHHHHcCCCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 378899999999999999999999999998 887777665 3333 5777777
No 115
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=91.51 E-value=0.46 Score=36.42 Aligned_cols=39 Identities=33% Similarity=0.390 Sum_probs=34.8
Q ss_pred ccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEEC
Q psy2263 28 KIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVN 66 (232)
Q Consensus 28 ~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vn 66 (232)
..|+.+....+.+.|..|..||+|+++|+..+++|++|-
T Consensus 112 ~~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEEGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred hCCCEEEeeCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 368888887788999999999999999999999998864
No 116
>KOG2921|consensus
Probab=89.56 E-value=0.5 Score=40.27 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=35.3
Q ss_pred cEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHh
Q psy2263 169 QIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEK 212 (232)
Q Consensus 169 ~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~ 212 (232)
..+. |...||+.-. ||.+||+|..+||.++.+. +|+.+.++.
T Consensus 222 V~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 222 VTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred EEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHh
Confidence 4444 7788887443 8999999999999999999 999999876
No 117
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=89.13 E-value=8 Score=29.71 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEE-EccCChhhhCCCCCCCEEEEEC
Q psy2263 170 IIR-LVKESSASRNGLLTDHHILEVN 194 (232)
Q Consensus 170 v~~-v~~~s~a~~~Gl~~GD~Il~Vn 194 (232)
.+. +..||+|+++|+.-|+.|++|-
T Consensus 125 ~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 125 IVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred EEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 444 8889999999999999888876
No 118
>KOG4371|consensus
Probab=88.10 E-value=0.64 Score=44.36 Aligned_cols=80 Identities=25% Similarity=0.466 Sum_probs=60.3
Q ss_pred eEEEEEEeeCCCccceEEee--cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAA--IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~--~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
++.+.+.+.+...+|..+.. ..+|+++..+...+.|...| +++||+++..+|.++.++........++ ....++.+
T Consensus 1246 l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~-~v~~p~~~ 1324 (1332)
T KOG4371|consen 1246 LISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK-LVQGPVQI 1324 (1332)
T ss_pred hhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh-hccCchhh
Confidence 45667777788888888765 45889999888888777666 9999999999999999998755555554 33455555
Q ss_pred EEec
Q psy2263 93 VVRD 96 (232)
Q Consensus 93 ~v~r 96 (232)
++.|
T Consensus 1325 ~~~~ 1328 (1332)
T KOG4371|consen 1325 TVTR 1328 (1332)
T ss_pred eehh
Confidence 5544
No 119
>KOG4407|consensus
Probab=87.05 E-value=0.37 Score=46.94 Aligned_cols=57 Identities=28% Similarity=0.527 Sum_probs=47.6
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
..+||..|.+++||+-+.|+.||+++.||..++.++.....+.++++.+ ..+.+.+.
T Consensus 143 eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~~ 199 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHVV 199 (1973)
T ss_pred hhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCC-CCCCceec
Confidence 5589999999999999999999999999999999998888888888765 33344333
No 120
>KOG2921|consensus
Probab=81.25 E-value=1.9 Score=36.98 Aligned_cols=47 Identities=32% Similarity=0.272 Sum_probs=37.9
Q ss_pred cCCceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 36 IHEGVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 36 ~~~g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
...++.|..|...||+.. .||.+||+|.++||-++.+. ++..+-+..
T Consensus 218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred cCceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHh
Confidence 347889999999999763 47999999999999999976 456665554
No 121
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=55.89 E-value=7.6 Score=32.40 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=26.4
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNV 198 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~ 198 (232)
+.+|.+-+||+++|...||.|+.+|+.++
T Consensus 67 ~lrv~~~~~~e~~~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 67 VLRVNPESPAEKAGMVVGDYILGINEDPL 95 (417)
T ss_pred heeccccChhHhhccccceeEEeecCCcH
Confidence 66789999999999999999999998776
No 122
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=45.97 E-value=13 Score=31.05 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=31.1
Q ss_pred cceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeC
Q psy2263 29 IGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTV 70 (232)
Q Consensus 29 lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v 70 (232)
+|+.-.....-+-+-.|.+.+||..+|+-.||-|+-+|+.++
T Consensus 54 ~gi~htsVn~~l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 54 LGIFHTSVNCLLEVLRVNPESPAEKAGMVVGDYILGINEDPL 95 (417)
T ss_pred hccccchhhhhhhheeccccChhHhhccccceeEEeecCCcH
Confidence 455322223334566889999999999999999999997555
No 123
>KOG0792|consensus
Probab=44.77 E-value=12 Score=36.26 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=34.9
Q ss_pred cCChhhhCC--CCCCCEEEEECCeEcCCCCHHHHHHHHHhCC
Q psy2263 175 KESSASRNG--LLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214 (232)
Q Consensus 175 ~~s~a~~~G--l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~ 214 (232)
|+++|+... +-.||+.+.+||..+...+|+.++.++++..
T Consensus 757 p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~irs~r 798 (1144)
T KOG0792|consen 757 PESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIRSPR 798 (1144)
T ss_pred CCCCccccccCCCcccceeeecccccccccccchHHHHhhhh
Confidence 777887765 8899999999999999999999999987633
No 124
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=38.55 E-value=20 Score=30.06 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=21.1
Q ss_pred hhCC-CCCCCEEEEECCeEcCCCCHHHHHH
Q psy2263 180 SRNG-LLTDHHILEVNGQNVVGLKDKEIRE 208 (232)
Q Consensus 180 ~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~ 208 (232)
+..| |||||.++.|-|.|...+ +|+.-
T Consensus 99 aLfg~LRpgDell~i~G~PYDTL--eevIG 126 (416)
T COG4100 99 ALFGILRPGDELLYITGSPYDTL--EEVIG 126 (416)
T ss_pred HHHhccCCCCeEEEecCCcchhH--HHHhc
Confidence 4456 999999999999988766 66543
No 125
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=35.10 E-value=62 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
+.+||+++-|++.-.++-|..++.+++++.+..
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~ 146 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAK 146 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCE
Confidence 679999999999999999999999999998765
No 126
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=33.97 E-value=1e+02 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
+.+||+++-|++.-.++-|..++.+++++.+..
T Consensus 119 ~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~ 151 (187)
T PRK13810 119 LKPEDRIVMLEDVTTSGGSVREAIEVVREAGAY 151 (187)
T ss_pred CCCcCEEEEEEeccCCChHHHHHHHHHHHCCCE
Confidence 789999999999999999999999999997765
No 127
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=33.28 E-value=64 Score=24.90 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
+.+||+++-|++.-.++-|..++.+++++.+..
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~ 146 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAK 146 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCE
Confidence 789999999999999999999999999998765
No 128
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=31.94 E-value=50 Score=20.85 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHH
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVE 211 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~ 211 (232)
.++||+++-=.|..+.-++.+++.+.++
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~ 65 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLD 65 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHH
Confidence 7999999999999999999899888775
No 129
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=31.23 E-value=27 Score=30.09 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=12.1
Q ss_pred CC-CCCCCEEEEECCeEcCCC
Q psy2263 182 NG-LLTDHHILEVNGQNVVGL 201 (232)
Q Consensus 182 ~G-l~~GD~Il~Vng~~~~~~ 201 (232)
.| |+|||.++.+.|.|...+
T Consensus 90 fg~LrpGD~ll~~tG~PYDTL 110 (403)
T PF06838_consen 90 FGVLRPGDELLSITGKPYDTL 110 (403)
T ss_dssp HHH--TT-EEEESSSS--CCH
T ss_pred HhcCCCCCeEEEcCCCchhhH
Confidence 35 999999999999887544
No 130
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=26.00 E-value=1.3e+02 Score=23.76 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCCCCCEEEEECCeEcCCCCHHHHHHHHHh----CCCeEEEEEeCCccc
Q psy2263 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEK----APCVINLTIMPSYVY 227 (232)
Q Consensus 183 Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~----~~~~~~l~v~r~~~~ 227 (232)
-+++|++|++|.+.+. +. +.+.++|+. .+....+.+..++.|
T Consensus 128 rVk~Gqiifei~~~~~-~~--~~AkeALrrA~~KlP~~~kIv~~~~wgf 173 (213)
T PTZ00173 128 RVRIGQILLSIRTKEA-YV--PQAIEALRRAKYKFPGRQKIVVSNKWGF 173 (213)
T ss_pred EECcCCEEEEEecccC-CH--HHHHHHHHHhcccCCCeEEEEEecccCc
Confidence 3788999999987663 23 667777765 466677777766654
No 131
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.74 E-value=71 Score=30.22 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=36.5
Q ss_pred EEEEECCeEeecccccC------CCccceEEec----------C---------c-EEEEccCChhhhCCCCCCCEEE-EE
Q psy2263 141 HILEVNGQNVVGLKNDS------AGHVGFQFKR----------G---------Q-IIRLVKESSASRNGLLTDHHIL-EV 193 (232)
Q Consensus 141 ~i~~v~g~~~~~~~~~~------~~~~g~~~~~----------g---------~-v~~v~~~s~a~~~Gl~~GD~Il-~V 193 (232)
+++.+||+++.....+. .+.+|++... | . -++ .+...|.+.||+-||.++ .|
T Consensus 543 Rl~aiNGq~v~~~~~~~~~~~al~rd~~LT~~~~~P~~n~l~aG~Ww~~~~~g~P~VS-~e~~~A~~LglKLGDtvTf~v 621 (829)
T COG3127 543 RLTAINGQPVTEMSVPPSARWALRRDLNLTWAEKRPENNPLTAGRWWPKNDSGEPEVS-MEEGEAKRLGLKLGDTVTFMV 621 (829)
T ss_pred eEEEecCccCccccCCchHHHHHhcccCcchhhcCCCCCccccccCCCCCCCCCCccc-hhHhHHHHhCCccCCEEEEEe
Confidence 57788998887655443 3445555521 1 1 122 234557778999999775 78
Q ss_pred CCeEcC
Q psy2263 194 NGQNVV 199 (232)
Q Consensus 194 ng~~~~ 199 (232)
+|+++.
T Consensus 622 ~gq~i~ 627 (829)
T COG3127 622 LGQNIT 627 (829)
T ss_pred ccceEE
Confidence 888874
No 132
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.70 E-value=1.3e+02 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeE
Q psy2263 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVI 217 (232)
Q Consensus 183 Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~ 217 (232)
+..+|++++-|++.-+.+.+--+++++|++.+..+
T Consensus 108 ~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V 142 (201)
T COG0461 108 GEVKGEKVVVVEDVITTGGSILEAVEALREAGAEV 142 (201)
T ss_pred cCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeE
Confidence 36689999999999999999999999999987763
No 133
>KOG0792|consensus
Probab=24.69 E-value=43 Score=32.81 Aligned_cols=65 Identities=34% Similarity=0.453 Sum_probs=48.5
Q ss_pred EEEeeCCCccceEEeecC--------CceEEEEec-------------CCCHHhhcC--CCCCCEEEEECCeeCCCCCHH
Q psy2263 20 FLCKDIHGKIGLRVAAIH--------EGVFVCLVQ-------------EGSPAALVG--LRFGDQILQVNGKTVAGSNMH 76 (232)
Q Consensus 20 ~l~~~~~~~lGi~~~~~~--------~g~~V~~V~-------------~~s~A~~ag--L~~GD~I~~Vng~~v~~~~~~ 76 (232)
.+...+.|.+|+.+.+.. ....++.+. |+++|+... +..||+++++||..+....++
T Consensus 709 ~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~ 788 (1144)
T KOG0792|consen 709 YLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHD 788 (1144)
T ss_pred ccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeeccccccccccc
Confidence 344455778888887631 334556666 888887655 999999999999999999887
Q ss_pred HHHHHHhh
Q psy2263 77 QVHALLRN 84 (232)
Q Consensus 77 ~~~~~l~~ 84 (232)
..+..++.
T Consensus 789 ~~vs~irs 796 (1144)
T KOG0792|consen 789 QVVSLIRS 796 (1144)
T ss_pred chHHHHhh
Confidence 77777764
No 134
>KOG4060|consensus
Probab=24.28 E-value=2.4e+02 Score=21.02 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=41.7
Q ss_pred CceEEEEecCCCHHhh--cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEec
Q psy2263 38 EGVFVCLVQEGSPAAL--VGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~--agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r 96 (232)
...-+....|+|--.. .-|..=|+++.++|..-.-. ..+.+++++.-..-++++|..
T Consensus 94 qt~~v~~l~p~stv~ese~~ltTyeRvvqls~v~Ap~~--~~Fl~iiqa~lPeGV~l~VkE 152 (176)
T KOG4060|consen 94 QTIEVLQLQPQSTVMESESVLTTYERVVQLSGVSAPFA--EIFLEIIQASLPEGVRLSVKE 152 (176)
T ss_pred cceeEEEecCCceeeehhhhhhhhhheeeecccCchhH--HHHHHHHHHhCCcceEEEeee
Confidence 4566777888876443 34999999999999888755 567788877655667777754
No 135
>PRK13669 hypothetical protein; Provisional
Probab=24.15 E-value=98 Score=20.23 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=25.3
Q ss_pred hCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh
Q psy2263 181 RNGLLTDHHILEVNGQNVVGLKDKEIREIVEK 212 (232)
Q Consensus 181 ~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~ 212 (232)
..|+..-.--.-|||..+...|.+++++.+.+
T Consensus 39 ~CG~C~~~~FAlVng~~V~a~t~eeL~~kI~~ 70 (78)
T PRK13669 39 YCGICSEGLFALVNGEVVEGETPEELVENIYA 70 (78)
T ss_pred hCcCcccCceEEECCeEeecCCHHHHHHHHHH
Confidence 34555555667899999999999999998765
No 136
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=24.13 E-value=65 Score=28.14 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.1
Q ss_pred EEEEccCChhhhCCCCCCCEEEEEC-CeEcCCC
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVN-GQNVVGL 201 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vn-g~~~~~~ 201 (232)
++++-+++.++..|+.+||.++.|| +..+...
T Consensus 5 i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 5 ISKVGGISGADCDGFEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred eeeccCCCcccccCccccceeeecCCCCCCCcC
Confidence 5568889999999999999999999 7776554
No 137
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.68 E-value=1.6e+02 Score=21.60 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=32.9
Q ss_pred cEEEEccCChhhhCCCCCCCEEEEECCeEc-----CCCCHHHHHHHHHhCCCeEEEEE
Q psy2263 169 QIIRLVKESSASRNGLLTDHHILEVNGQNV-----VGLKDKEIREIVEKAPCVINLTI 221 (232)
Q Consensus 169 ~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~-----~~~~~~~~~~~l~~~~~~~~l~v 221 (232)
.++.++||-- .|=-++.++|..+ +++++.++.+.+.+.|.++-+-.
T Consensus 33 lIVGiDPG~t-------tgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAt 83 (138)
T PF04312_consen 33 LIVGIDPGTT-------TGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVAT 83 (138)
T ss_pred EEEEECCCce-------eEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEe
Confidence 3666777643 3334666666554 78888999999999999876643
No 138
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=23.29 E-value=66 Score=28.10 Aligned_cols=35 Identities=29% Similarity=0.194 Sum_probs=30.6
Q ss_pred EEEEecCCCHHhhcCCCCCCEEEEEC-CeeCCCCCH
Q psy2263 41 FVCLVQEGSPAALVGLRFGDQILQVN-GKTVAGSNM 75 (232)
Q Consensus 41 ~V~~V~~~s~A~~agL~~GD~I~~Vn-g~~v~~~~~ 75 (232)
.|..+.+++.++..|++.||-+..|| |........
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c~~ 39 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDCIP 39 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcCCC
Confidence 46789999999999999999999999 888877654
No 139
>PRK03760 hypothetical protein; Provisional
Probab=22.55 E-value=62 Score=22.86 Aligned_cols=19 Identities=5% Similarity=-0.244 Sum_probs=15.6
Q ss_pred EccCChhhhCCCCCCCEEE
Q psy2263 173 LVKESSASRNGLLTDHHIL 191 (232)
Q Consensus 173 v~~~s~a~~~Gl~~GD~Il 191 (232)
-.+.+.+++.|+++||+|.
T Consensus 95 El~aG~~~~~gi~~Gd~v~ 113 (117)
T PRK03760 95 EGPVGKIRVLKVEVGDEIE 113 (117)
T ss_pred EeCCChHHHcCCCCCCEEE
Confidence 4577778899999999983
No 140
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=21.74 E-value=2.2e+02 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 183 Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
++.+|+.++-|++.-.++-|..++.+++++.+..
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~ 143 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGI 143 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 5789999999999999999999999999988765
No 141
>PLN02293 adenine phosphoribosyltransferase
Probab=21.70 E-value=2.1e+02 Score=22.02 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=30.4
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
+.+|++++-|++.-.++-|..++.+++++.+..
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~ 154 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAE 154 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCE
Confidence 779999999999999999999999999997765
No 142
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=20.91 E-value=80 Score=21.98 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 183 GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 183 Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
-+++|++|+++.+.+. . +.+.+.++.....
T Consensus 75 ~v~~G~iifEi~~~~~--~--~~~~~alk~a~~K 104 (112)
T cd01433 75 RVKPGQILFEVRGVPE--E--EVAKEALRRAAKK 104 (112)
T ss_pred EECCCCEEEEEeCcCc--H--HHHHHHHHHhhcc
Confidence 3789999999999875 3 7777777765444
No 143
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=20.56 E-value=93 Score=27.97 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNV 198 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~ 198 (232)
++..+++.|...+ .+|||+|..-||+.+
T Consensus 302 vl~~~ENm~~g~A-~rPGDVits~~GkTV 329 (485)
T COG0260 302 VLPAVENMPSGNA-YRPGDVITSMNGKTV 329 (485)
T ss_pred EEeeeccCCCCCC-CCCCCeEEecCCcEE
No 144
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=20.37 E-value=2.5e+02 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
+.+|+.++-|++.-.++-|..++.+++++.+..
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe
Confidence 779999999999999999999999999987765
No 145
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=20.11 E-value=2.4e+02 Score=22.05 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=30.1
Q ss_pred CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe
Q psy2263 184 LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV 216 (232)
Q Consensus 184 l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~ 216 (232)
+.+|+.++-|++.-.++-|..++.++|++.+..
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~ 147 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLV 147 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 679999999999999999999999999987765
No 146
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=20.01 E-value=2.2e+02 Score=19.97 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=30.2
Q ss_pred hhhcCCCCCCEEEEEC---CeEeecccccCCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeE
Q psy2263 131 ASRNGLLTDHHILEVN---GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQN 197 (232)
Q Consensus 131 a~~~gl~~gd~i~~v~---g~~~~~~~~~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~ 197 (232)
.+++|+.++..+.-+| |..+...--..... .| + +.-+++|++. .++||+|+-..--.
T Consensus 32 l~aagi~~~E~V~I~Nv~NG~Rf~TYvI~g~~g------Sg-~--I~lNGAAAr~-~~~GD~vII~sy~~ 91 (111)
T cd06919 32 LEAAGILPYEKVLVVNVNNGARFETYVIPGERG------SG-V--ICLNGAAARL-GQPGDRVIIMAYAL 91 (111)
T ss_pred HHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCC------CC-E--EEeCCHHHhc-CCCCCEEEEEECcc
Confidence 4678888888766554 44433221000000 00 1 2345666665 59999888765433
Done!