Query psy2263
Match_columns 232
No_of_seqs 145 out of 1978
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xkx_A Disks large homolog 4; 100.0 1E-26 3.5E-31 212.1 26.7 211 12-225 56-391 (721)
2 1w9e_A Syntenin 1; cell adhesi 99.9 2.5E-25 8.6E-30 168.4 24.3 163 14-224 3-165 (166)
3 3gsl_A Disks large homolog 4; 99.9 3.2E-25 1.1E-29 171.9 19.4 175 14-228 4-193 (196)
4 3r0h_A INAD, inactivation-NO-a 99.9 4.2E-24 1.4E-28 167.1 22.6 174 6-225 9-196 (206)
5 1p1d_A PDZ45, glutamate recept 99.9 6.3E-24 2.2E-28 164.9 21.5 171 15-225 6-195 (196)
6 2qt5_A Glutamate receptor-inte 99.9 3.9E-23 1.3E-27 160.9 22.0 172 14-225 6-195 (200)
7 3suz_A Amyloid beta A4 precurs 99.9 3.8E-25 1.3E-29 188.3 6.3 170 13-230 202-379 (388)
8 3pv2_A DEGQ; trypsin fold, PDZ 99.8 5E-20 1.7E-24 159.5 16.9 177 23-227 254-445 (451)
9 4a8c_A Periplasmic PH-dependen 99.8 1.1E-19 3.6E-24 157.0 18.6 174 22-227 235-422 (436)
10 3rle_A Golgi reassembly-stacki 99.8 8.9E-19 3.1E-23 137.0 15.2 146 37-225 15-170 (209)
11 1ky9_A Protease DO, DEGP, HTRA 99.7 3.6E-19 1.2E-23 154.1 2.6 169 24-227 260-442 (448)
12 1r6j_A Syntenin 1; PDZ, membra 99.7 9.8E-16 3.3E-20 101.3 9.9 69 156-224 13-81 (82)
13 4fln_A Protease DO-like 2, chl 99.6 4.8E-15 1.7E-19 129.8 12.5 185 26-222 252-470 (539)
14 1kwa_A Hcask/LIN-2 protein; PD 99.6 1.3E-14 4.4E-19 97.7 11.3 83 16-99 2-86 (88)
15 1r6j_A Syntenin 1; PDZ, membra 99.6 1.2E-14 4.2E-19 95.9 10.4 77 15-96 4-80 (82)
16 2xkx_A Disks large homolog 4; 99.6 2.9E-14 9.9E-19 130.2 15.6 127 99-226 59-245 (721)
17 1wi2_A Riken cDNA 2700099C19; 99.6 4.2E-14 1.4E-18 98.2 12.1 91 8-100 8-101 (104)
18 2v90_A PDZ domain-containing p 99.6 3.5E-14 1.2E-18 97.1 11.3 87 14-102 2-93 (96)
19 1ihj_A INAD; intermolecular di 99.6 4.2E-14 1.4E-18 97.1 11.5 85 13-98 3-97 (98)
20 2he4_A Na(+)/H(+) exchange reg 99.6 7.2E-14 2.4E-18 94.4 12.4 84 14-99 3-88 (90)
21 2ejy_A 55 kDa erythrocyte memb 99.6 4.5E-14 1.5E-18 96.6 11.3 84 13-97 10-95 (97)
22 2iwo_A Multiple PDZ domain pro 99.6 2.2E-14 7.5E-19 102.2 10.0 89 14-103 23-118 (120)
23 2eeh_A PDZ domain-containing p 99.6 4.6E-14 1.6E-18 97.3 11.3 87 12-100 7-96 (100)
24 3gge_A PDZ domain-containing p 99.6 8.7E-14 3E-18 93.8 12.2 82 14-96 4-88 (95)
25 1va8_A Maguk P55 subfamily mem 99.6 9.8E-14 3.4E-18 97.8 13.0 92 8-100 18-110 (113)
26 1g9o_A NHE-RF; PDZ domain, com 99.6 1.1E-13 3.6E-18 93.7 12.5 85 14-99 2-88 (91)
27 2awx_A Synapse associated prot 99.5 1.5E-13 5.2E-18 95.5 12.5 91 15-107 3-102 (105)
28 1qau_A Neuronal nitric oxide s 99.5 2.3E-13 7.8E-18 95.7 13.5 92 16-107 2-96 (112)
29 2pkt_A PDZ and LIM domain prot 99.5 2E-13 6.8E-18 92.4 12.4 76 25-101 11-89 (91)
30 2jil_A GRIP1 protein, glutamat 99.5 1.4E-13 4.9E-18 94.2 11.6 84 16-101 4-95 (97)
31 2pa1_A PDZ and LIM domain prot 99.5 2.2E-13 7.5E-18 91.4 12.3 79 19-98 4-85 (87)
32 3cbz_A Dishevelled-2; PDZ doma 99.5 6.8E-14 2.3E-18 97.8 9.8 85 15-99 5-97 (108)
33 1i16_A Interleukin 16, LCF; cy 99.5 5.1E-14 1.8E-18 101.7 9.3 96 3-99 17-119 (130)
34 2o2t_A Multiple PDZ domain pro 99.5 6.2E-14 2.1E-18 99.4 9.4 90 13-103 18-115 (117)
35 2d92_A INAD-like protein; PDZ 99.5 2.2E-13 7.4E-18 95.2 11.9 85 13-98 13-105 (108)
36 2qg1_A Multiple PDZ domain pro 99.5 3.6E-13 1.2E-17 91.3 12.5 84 14-98 3-89 (92)
37 2yt7_A Amyloid beta A4 precurs 99.5 2.7E-13 9.1E-18 93.6 12.0 86 13-98 7-99 (101)
38 2opg_A Multiple PDZ domain pro 99.5 5.8E-13 2E-17 91.3 13.5 86 15-102 4-94 (98)
39 1qav_A Alpha-1 syntrophin (res 99.5 2.9E-13 9.8E-18 91.4 11.6 82 14-96 3-88 (90)
40 2dmz_A INAD-like protein; PDZ 99.5 2.4E-13 8.1E-18 98.1 11.9 95 7-102 7-110 (129)
41 2vsp_A PDZ domain-containing p 99.5 7.6E-14 2.6E-18 94.5 8.7 85 14-100 2-88 (91)
42 2jik_A Synaptojanin-2 binding 99.5 3.7E-13 1.3E-17 92.8 12.3 84 14-99 6-98 (101)
43 2ego_A General receptor for ph 99.5 4E-13 1.4E-17 91.8 12.3 82 14-96 3-94 (96)
44 2i1n_A Discs, large homolog 3; 99.5 3.6E-13 1.2E-17 93.1 12.0 87 14-102 3-98 (102)
45 2fne_A Multiple PDZ domain pro 99.5 2.8E-13 9.7E-18 96.0 11.7 86 13-100 23-115 (117)
46 2fcf_A Multiple PDZ domain pro 99.5 3.8E-13 1.3E-17 93.1 12.0 84 15-99 4-100 (103)
47 2e7k_A Maguk P55 subfamily mem 99.5 8.4E-14 2.9E-18 94.3 8.4 83 13-97 4-87 (91)
48 3o46_A Maguk P55 subfamily mem 99.5 4.6E-13 1.6E-17 91.0 12.0 83 14-98 3-88 (93)
49 2w4f_A Protein LAP4; structura 99.5 6.6E-13 2.2E-17 90.8 12.8 81 18-100 6-95 (97)
50 3b76_A E3 ubiquitin-protein li 99.5 3.5E-13 1.2E-17 95.6 11.6 83 14-97 23-112 (118)
51 1x6d_A Interleukin-16; PDZ dom 99.5 2.6E-13 9E-18 96.4 10.9 91 14-104 14-109 (119)
52 1d5g_A Human phosphatase HPTP1 99.5 7.5E-13 2.6E-17 90.4 12.8 85 13-99 3-94 (96)
53 3e17_A Tight junction protein 99.5 1.5E-13 5.1E-18 92.4 9.1 71 158-228 12-84 (88)
54 2byg_A Channel associated prot 99.5 4.1E-13 1.4E-17 95.2 11.8 91 6-98 15-114 (117)
55 2jxo_A Ezrin-radixin-moesin-bi 99.5 4.2E-13 1.5E-17 92.0 11.4 89 10-99 4-94 (98)
56 3r68_A Na(+)/H(+) exchange reg 99.5 3.6E-13 1.2E-17 91.8 11.0 83 14-98 4-88 (95)
57 1q3o_A Shank1; PDZ, GKAP, pept 99.5 6.3E-13 2.2E-17 93.0 12.5 81 15-96 7-102 (109)
58 2vwr_A Ligand of NUMB protein 99.5 7.6E-13 2.6E-17 90.2 12.6 84 15-99 3-90 (95)
59 3ngh_A PDZ domain-containing p 99.5 3E-13 1E-17 94.1 10.7 84 16-100 2-87 (106)
60 3l4f_D SH3 and multiple ankyri 99.5 4E-13 1.4E-17 97.2 11.7 84 14-98 26-124 (132)
61 1ujd_A KIAA0559 protein; PDZ d 99.5 3.4E-13 1.2E-17 95.6 11.1 84 16-100 13-111 (117)
62 3qe1_A Sorting nexin-27, G pro 99.5 7.4E-13 2.5E-17 92.3 12.6 85 14-100 5-104 (107)
63 1n7e_A AMPA receptor interacti 99.5 7.6E-13 2.6E-17 90.6 12.4 84 15-100 5-92 (97)
64 2q3g_A PDZ and LIM domain prot 99.5 6.3E-13 2.2E-17 89.5 11.8 82 17-99 3-87 (89)
65 1m5z_A GRIP, AMPA receptor int 99.5 1.1E-12 3.7E-17 88.7 12.8 83 14-97 5-90 (91)
66 2cs5_A Tyrosine-protein phosph 99.5 2.3E-13 7.8E-18 96.8 9.8 95 7-101 7-109 (119)
67 2h2b_A Tight junction protein 99.5 6.3E-13 2.2E-17 92.6 11.7 86 14-101 6-100 (107)
68 2vz5_A TAX1-binding protein 3; 99.5 4.5E-13 1.5E-17 97.8 11.4 93 15-107 23-133 (139)
69 2dlu_A INAD-like protein; PDZ 99.5 6.9E-13 2.4E-17 93.1 11.9 93 6-100 6-100 (111)
70 2fe5_A Presynaptic protein SAP 99.5 1.1E-12 3.8E-17 89.1 12.6 83 14-98 2-93 (94)
71 3i4w_A Disks large homolog 4; 99.5 4.2E-13 1.4E-17 93.0 10.4 85 13-99 9-96 (104)
72 2f5y_A Regulator of G-protein 99.5 1E-12 3.5E-17 88.8 11.9 82 15-99 3-84 (91)
73 1ueq_A Membrane associated gua 99.5 1.6E-12 5.5E-17 92.9 13.6 87 11-98 15-106 (123)
74 1um1_A KIAA1849 protein, RSGI 99.5 4.4E-13 1.5E-17 93.9 10.4 92 14-107 7-105 (110)
75 4e34_A Golgi-associated PDZ an 99.5 7.9E-13 2.7E-17 88.6 11.2 81 15-96 2-86 (87)
76 2jre_A C60-1 PDZ domain peptid 99.5 7E-13 2.4E-17 92.5 11.3 85 15-100 12-106 (108)
77 2i04_A Membrane-associated gua 99.5 1.3E-12 4.4E-17 87.1 12.1 78 18-96 3-85 (85)
78 1wi4_A Synip, syntaxin binding 99.5 1.1E-12 3.7E-17 91.8 12.2 84 13-98 13-105 (109)
79 3sfj_A TAX1-binding protein 3; 99.5 7.8E-13 2.7E-17 91.6 11.3 80 17-96 6-103 (104)
80 2eno_A Synaptojanin-2-binding 99.5 6.8E-13 2.3E-17 94.4 11.1 85 14-100 16-109 (120)
81 2iwq_A Multiple PDZ domain pro 99.5 1.1E-12 3.8E-17 93.7 12.1 84 15-99 24-120 (123)
82 3axa_A Afadin, nectin-3, prote 99.5 1.4E-12 4.6E-17 90.8 12.3 87 11-100 7-100 (106)
83 1v62_A KIAA1719 protein; struc 99.5 9.4E-13 3.2E-17 93.3 11.6 86 14-100 14-104 (117)
84 2r4h_A Membrane-associated gua 99.5 1.6E-12 5.3E-17 91.4 12.6 86 12-99 21-110 (112)
85 2g5m_B Neurabin-2; spinophilin 99.5 3.5E-13 1.2E-17 94.9 9.1 90 16-107 5-104 (113)
86 1b8q_A Protein (neuronal nitri 99.5 3.5E-13 1.2E-17 96.9 9.3 94 14-107 7-103 (127)
87 1x5q_A LAP4 protein; PDZ domai 99.5 3.1E-12 1.1E-16 89.5 13.9 82 18-101 18-108 (110)
88 2ehr_A INAD-like protein; PDZ 99.4 1.2E-12 4E-17 92.7 11.7 90 9-99 9-111 (117)
89 1v5q_A GRIP1 homolog, glutamat 99.4 7.1E-13 2.4E-17 94.6 10.6 91 13-103 13-112 (122)
90 2q9v_A Membrane-associated gua 99.4 9.2E-13 3.1E-17 88.8 10.6 82 15-97 2-88 (90)
91 1nf3_C PAR-6B; semi-CRIB motif 99.4 1.1E-12 3.7E-17 94.4 11.6 89 10-99 24-126 (128)
92 3nfk_A Tyrosine-protein phosph 99.4 8.9E-13 3.1E-17 91.9 10.8 87 10-96 12-106 (107)
93 2d90_A PDZ domain containing p 99.4 9.7E-13 3.3E-17 90.9 10.7 85 13-99 4-90 (102)
94 2csj_A TJP2 protein; PDZ domai 99.4 5.1E-13 1.8E-17 94.6 9.5 88 13-102 12-108 (117)
95 2vsv_A Rhophilin-2; scaffold p 99.4 1.2E-12 4.1E-17 91.4 11.1 82 14-97 22-103 (109)
96 2rcz_A Tight junction protein 99.4 1E-12 3.4E-17 86.7 10.3 77 148-224 2-80 (81)
97 2uzc_A Human pdlim5, PDZ and L 99.4 2.3E-12 8E-17 86.5 12.1 78 18-98 6-86 (88)
98 2db5_A INAD-like protein; PDZ 99.4 1.1E-12 3.7E-17 94.5 11.0 86 14-100 24-117 (128)
99 2eaq_A LIM domain only protein 99.4 1.1E-12 3.6E-17 88.5 10.3 74 25-98 15-89 (90)
100 1wf8_A Neurabin-I; PDZ domain, 99.4 1.1E-12 3.9E-17 91.4 10.7 84 14-99 8-101 (107)
101 2dc2_A GOPC, golgi associated 99.4 1.5E-12 5.3E-17 90.1 11.3 84 14-98 8-95 (103)
102 2koj_A Partitioning defective 99.4 3.3E-12 1.1E-16 89.5 13.1 82 18-100 14-103 (111)
103 2dkr_A LIN-7 homolog B; LIN-7B 99.4 1.6E-12 5.5E-17 88.2 11.1 84 14-99 4-91 (93)
104 3bpu_A Membrane-associated gua 99.4 1.6E-12 5.3E-17 87.3 10.9 81 15-98 3-86 (88)
105 2kjd_A Sodium/hydrogen exchang 99.4 6.1E-13 2.1E-17 95.7 9.3 97 10-107 4-104 (128)
106 2djt_A Unnamed protein product 99.4 2.2E-12 7.4E-17 89.4 11.8 85 14-100 10-100 (104)
107 3soe_A Membrane-associated gua 99.4 2.5E-12 8.7E-17 89.8 12.1 85 14-101 11-96 (113)
108 2qkv_A Inactivation-NO-after-p 99.4 2E-12 6.8E-17 88.3 11.4 81 16-97 9-90 (96)
109 1y7n_A Amyloid beta A4 precurs 99.4 1.4E-12 4.7E-17 88.0 10.4 69 156-224 21-89 (90)
110 1uep_A Membrane associated gua 99.4 3.7E-13 1.3E-17 93.2 7.8 84 15-99 9-97 (103)
111 1uhp_A Hypothetical protein KI 99.4 2.5E-12 8.5E-17 89.6 12.1 84 13-98 6-101 (107)
112 2dls_A PDZ-rhogef, RHO guanine 99.4 2.2E-12 7.4E-17 87.6 11.4 82 14-99 7-88 (93)
113 2kpk_A Membrane-associated gua 99.4 2.9E-12 1E-16 92.3 12.7 86 12-98 15-105 (129)
114 3hpk_A Protein interacting wit 99.4 2.3E-12 7.8E-17 92.4 12.0 81 15-96 19-103 (125)
115 2z17_A Pleckstrin homology SEC 99.4 9.3E-13 3.2E-17 91.3 9.6 85 9-94 9-103 (104)
116 2kv8_A RGS12, regulator of G-p 99.4 4.2E-13 1.4E-17 89.1 7.5 80 15-97 2-81 (83)
117 2gzv_A PRKCA-binding protein; 99.4 3E-12 1E-16 90.2 12.1 84 12-96 21-108 (114)
118 2la8_A Inactivation-NO-after-p 99.4 1.5E-12 5.1E-17 90.6 10.3 80 17-97 4-84 (106)
119 1uit_A Human discs large 5 pro 99.4 3E-12 1E-16 90.6 11.9 89 15-105 19-108 (117)
120 1vb7_A PDZ and LIM domain 2; P 99.4 1.1E-12 3.6E-17 89.3 8.8 82 19-101 8-92 (94)
121 2qg1_A Multiple PDZ domain pro 99.4 3E-12 1E-16 86.6 11.0 70 158-227 15-91 (92)
122 2edz_A PDZ domain-containing p 99.4 5.4E-13 1.8E-17 94.1 7.5 90 15-105 13-104 (114)
123 2ego_A General receptor for ph 99.4 2E-12 6.8E-17 88.3 10.1 67 158-224 15-95 (96)
124 1tp5_A Presynaptic density pro 99.4 3.4E-12 1.2E-16 90.6 11.7 84 13-98 12-98 (119)
125 1wg6_A Hypothetical protein (r 99.4 5E-13 1.7E-17 96.1 7.3 81 19-99 29-123 (127)
126 2v90_A PDZ domain-containing p 99.4 1.9E-12 6.3E-17 88.4 9.8 70 159-228 14-92 (96)
127 4amh_A Disks large homolog 1; 99.4 6.5E-12 2.2E-16 87.3 12.6 78 21-99 7-93 (106)
128 1uew_A Membrane associated gua 99.4 3E-12 1E-16 90.3 11.0 87 13-100 8-105 (114)
129 1wh1_A KIAA1095 protein; PDZ d 99.4 8.5E-13 2.9E-17 94.5 8.3 95 12-108 16-117 (124)
130 2eei_A PDZ domain-containing p 99.4 1.4E-12 4.6E-17 90.8 9.0 86 13-100 6-93 (106)
131 2dm8_A INAD-like protein; PDZ 99.4 2.2E-12 7.4E-17 91.2 10.1 91 11-103 13-108 (116)
132 3tsv_A Tight junction protein 99.4 1.9E-12 6.4E-17 92.6 9.8 78 24-101 36-115 (124)
133 1g9o_A NHE-RF; PDZ domain, com 99.4 3.4E-12 1.2E-16 86.2 10.6 70 159-228 14-89 (91)
134 1whd_A RGS3, regulator of G-pr 99.4 1.5E-12 5.2E-17 89.6 8.9 90 6-98 6-95 (100)
135 1ujv_A Membrane associated gua 99.4 8.1E-12 2.8E-16 85.3 12.3 83 14-99 9-92 (96)
136 2uzc_A Human pdlim5, PDZ and L 99.4 2.6E-12 9E-17 86.2 9.7 68 158-225 12-86 (88)
137 1wf7_A Enigma homologue protei 99.4 3.3E-12 1.1E-16 88.3 10.5 88 17-107 7-97 (103)
138 3b76_A E3 ubiquitin-protein li 99.4 1.1E-12 3.7E-17 93.1 8.1 69 158-226 35-114 (118)
139 2kom_A Partitioning defective 99.4 1E-11 3.6E-16 88.4 13.3 81 17-98 32-120 (121)
140 1wfg_A Regulating synaptic mem 99.4 5E-12 1.7E-16 91.3 11.7 74 25-98 46-127 (131)
141 1wha_A KIAA0147 protein, scrib 99.4 3.9E-12 1.3E-16 88.3 10.5 81 16-98 8-98 (105)
142 1q7x_A PDZ2B domain of PTP-BAS 99.4 2.6E-12 9E-17 89.6 9.7 86 14-101 8-105 (108)
143 4amh_A Disks large homolog 1; 99.4 2.6E-12 8.9E-17 89.4 9.6 71 156-226 10-93 (106)
144 3ngh_A PDZ domain-containing p 99.4 1.7E-12 5.7E-17 90.3 8.7 72 156-227 10-87 (106)
145 3khf_A Microtubule-associated 99.4 2.5E-12 8.7E-17 88.2 9.4 79 19-99 6-94 (99)
146 2he4_A Na(+)/H(+) exchange reg 99.4 2.7E-12 9.4E-17 86.5 9.3 68 159-226 15-88 (90)
147 2pa1_A PDZ and LIM domain prot 99.4 2.9E-12 1E-16 85.8 9.4 69 157-225 10-85 (87)
148 2iwn_A Multiple PDZ domain pro 99.4 8E-12 2.7E-16 85.3 11.8 79 18-98 7-93 (97)
149 3kzd_A TIAM-1, T-lymphoma inva 99.4 8.2E-12 2.8E-16 84.3 11.5 79 15-96 6-90 (94)
150 2l97_A HTRA, putative serine p 99.4 4E-12 1.4E-16 92.2 10.6 84 22-108 24-125 (134)
151 1uf1_A KIAA1526 protein; PDZ d 99.4 9.3E-12 3.2E-16 89.5 12.4 94 15-110 20-116 (128)
152 2pkt_A PDZ and LIM domain prot 99.4 2.9E-12 9.9E-17 86.6 9.1 70 158-227 12-88 (91)
153 3egg_C Spinophilin; PP1, serin 99.4 6.7E-12 2.3E-16 94.5 11.9 81 15-97 80-170 (170)
154 2daz_A INAD-like protein; PDZ 99.4 7.6E-12 2.6E-16 89.5 11.7 86 14-101 24-114 (124)
155 1uez_A KIAA1526 protein; PDZ d 99.4 2.1E-12 7E-17 89.0 8.4 84 14-99 7-94 (101)
156 1v6b_A Harmonin isoform A1; st 99.4 5.3E-12 1.8E-16 89.5 10.6 89 7-97 10-106 (118)
157 3qe1_A Sorting nexin-27, G pro 99.4 4.8E-12 1.6E-16 88.1 10.1 58 170-227 47-104 (107)
158 3cyy_A Tight junction protein 99.4 7.1E-12 2.4E-16 84.7 10.7 74 154-227 10-85 (92)
159 1uju_A Scribble; PDZ domain, c 99.4 8.4E-13 2.9E-17 92.6 6.2 83 15-98 9-104 (111)
160 1d5g_A Human phosphatase HPTP1 99.4 7.8E-12 2.7E-16 85.2 10.9 69 158-226 15-94 (96)
161 1rgw_A ZAsp protein; PDZ, cyph 99.4 7.4E-12 2.5E-16 83.4 10.6 72 26-98 10-84 (85)
162 2iwo_A Multiple PDZ domain pro 99.4 3E-12 1E-16 91.0 9.1 69 159-227 36-115 (120)
163 2f5y_A Regulator of G-protein 99.4 4.5E-12 1.5E-16 85.6 9.6 68 159-226 14-84 (91)
164 2q3g_A PDZ and LIM domain prot 99.4 2.5E-12 8.4E-17 86.5 8.2 68 158-225 12-86 (89)
165 1kwa_A Hcask/LIN-2 protein; PD 99.4 3.5E-12 1.2E-16 85.6 8.9 69 158-226 12-86 (88)
166 1rgw_A ZAsp protein; PDZ, cyph 99.4 2.9E-12 9.8E-17 85.4 8.4 67 159-225 11-84 (85)
167 3gge_A PDZ domain-containing p 99.4 7.4E-12 2.5E-16 84.3 10.3 67 157-223 14-88 (95)
168 1ufx_A KIAA1526 protein; PDZ d 99.4 4.2E-12 1.4E-16 87.8 9.4 81 16-97 7-96 (103)
169 3k1r_A Harmonin; protein-prote 99.4 5.5E-12 1.9E-16 97.1 11.0 84 14-99 83-169 (192)
170 1wif_A RSGI RUH-020, riken cDN 99.4 5.4E-12 1.8E-16 90.2 10.0 82 15-97 27-110 (126)
171 2i1n_A Discs, large homolog 3; 99.4 4.4E-12 1.5E-16 87.5 9.3 70 158-227 14-96 (102)
172 2awx_A Synapse associated prot 99.4 4.9E-12 1.7E-16 87.8 9.6 70 159-228 14-96 (105)
173 2dc2_A GOPC, golgi associated 99.4 4.5E-12 1.5E-16 87.7 9.3 74 156-229 18-99 (103)
174 2fe5_A Presynaptic protein SAP 99.4 6E-12 2.1E-16 85.5 9.7 68 158-225 13-93 (94)
175 2ejy_A 55 kDa erythrocyte memb 99.4 3E-12 1E-16 87.4 8.2 68 158-225 23-96 (97)
176 1mfg_A ERB-B2 interacting prot 99.4 1.1E-11 3.9E-16 84.3 11.0 77 18-98 6-93 (95)
177 2eeg_A PDZ and LIM domain prot 99.3 6.3E-12 2.2E-16 85.4 9.7 81 16-99 9-92 (94)
178 3cyy_A Tight junction protein 99.3 1.4E-11 4.9E-16 83.2 11.5 84 18-105 5-90 (92)
179 1vb7_A PDZ and LIM domain 2; P 99.3 1.9E-12 6.4E-17 88.1 7.0 71 157-227 14-91 (94)
180 1x5n_A Harmonin; PDZ domain, u 99.3 5.9E-12 2E-16 88.7 9.8 90 16-107 16-109 (114)
181 4e34_A Golgi-associated PDZ an 99.3 7.5E-12 2.6E-16 83.8 9.7 66 157-222 12-85 (87)
182 2jik_A Synaptojanin-2 binding 99.3 5.3E-12 1.8E-16 86.9 9.2 68 159-226 18-98 (101)
183 1wfg_A Regulating synaptic mem 99.3 5E-12 1.7E-16 91.3 9.4 70 156-225 45-127 (131)
184 2d8i_A T-cell lymphoma invasio 99.3 4.5E-12 1.5E-16 89.2 8.9 87 10-99 10-102 (114)
185 2opg_A Multiple PDZ domain pro 99.3 1.2E-11 4.1E-16 84.7 10.8 70 158-227 14-92 (98)
186 1ihj_A INAD; intermolecular di 99.3 5.5E-12 1.9E-16 86.3 9.1 69 157-225 15-97 (98)
187 2vsp_A PDZ domain-containing p 99.3 1.9E-12 6.6E-17 87.5 6.6 69 160-228 15-89 (91)
188 1qav_A Alpha-1 syntrophin (res 99.3 6.7E-12 2.3E-16 84.6 9.1 68 157-224 14-89 (90)
189 3khf_A Microtubule-associated 99.3 7.3E-12 2.5E-16 85.9 9.5 70 157-226 11-94 (99)
190 3cbz_A Dishevelled-2; PDZ doma 99.3 3.9E-12 1.3E-16 88.8 8.1 68 159-226 17-97 (108)
191 2jil_A GRIP1 protein, glutamat 99.3 5.7E-12 2E-16 86.1 8.8 69 158-226 13-93 (97)
192 2vwr_A Ligand of NUMB protein 99.3 8.2E-12 2.8E-16 85.0 9.5 69 158-226 15-90 (95)
193 3r68_A Na(+)/H(+) exchange reg 99.3 5.4E-12 1.8E-16 85.9 8.5 70 158-227 15-90 (95)
194 1n7e_A AMPA receptor interacti 99.3 1.1E-11 3.8E-16 84.7 10.1 70 158-227 15-92 (97)
195 1uhp_A Hypothetical protein KI 99.3 9E-12 3.1E-16 86.7 9.8 69 158-226 18-102 (107)
196 2i04_A Membrane-associated gua 99.3 1E-11 3.5E-16 82.7 9.6 65 159-223 11-85 (85)
197 2fne_A Multiple PDZ domain pro 99.3 6.1E-12 2.1E-16 89.0 9.0 68 159-226 36-114 (117)
198 2d90_A PDZ domain containing p 99.3 8E-12 2.7E-16 86.2 9.4 68 159-226 17-90 (102)
199 3qik_A Phosphatidylinositol 3, 99.3 1.7E-11 5.6E-16 83.4 10.6 77 19-96 21-99 (101)
200 2byg_A Channel associated prot 99.3 5.9E-12 2E-16 89.1 8.7 67 159-225 35-114 (117)
201 2dkr_A LIN-7 homolog B; LIN-7B 99.3 1E-11 3.4E-16 84.2 9.6 69 158-226 15-91 (93)
202 2q9v_A Membrane-associated gua 99.3 3.8E-12 1.3E-16 85.8 7.4 67 159-225 13-89 (90)
203 1wfv_A Membrane associated gua 99.3 2.6E-12 9E-17 88.8 6.7 82 17-100 13-98 (103)
204 3o46_A Maguk P55 subfamily mem 99.3 8.3E-12 2.8E-16 84.6 9.1 68 159-226 15-89 (93)
205 2yub_A LIMK-2, LIM domain kina 99.3 7.4E-12 2.5E-16 88.7 9.1 88 17-105 14-112 (118)
206 3axa_A Afadin, nectin-3, prote 99.3 9.4E-12 3.2E-16 86.5 9.5 70 158-227 20-100 (106)
207 3nfk_A Tyrosine-protein phosph 99.3 9.6E-12 3.3E-16 86.6 9.5 73 152-224 22-107 (107)
208 1q7x_A PDZ2B domain of PTP-BAS 99.3 5.5E-12 1.9E-16 88.0 8.2 69 159-227 20-104 (108)
209 2kv8_A RGS12, regulator of G-p 99.3 2.8E-12 9.4E-17 85.1 6.2 67 159-225 13-82 (83)
210 1v62_A KIAA1719 protein; struc 99.3 9.2E-12 3.2E-16 88.1 9.3 70 158-227 26-104 (117)
211 1v5l_A PDZ and LIM domain 3; a 99.3 9.4E-13 3.2E-17 91.1 4.0 78 25-103 13-93 (103)
212 1m5z_A GRIP, AMPA receptor int 99.3 1.2E-11 4.1E-16 83.5 9.4 66 159-224 19-90 (91)
213 2edp_A Fragment, shroom family 99.3 1E-11 3.6E-16 85.3 9.2 84 15-100 9-96 (100)
214 1ujd_A KIAA0559 protein; PDZ d 99.3 6.8E-12 2.3E-16 88.8 8.4 69 158-226 29-110 (117)
215 1wf8_A Neurabin-I; PDZ domain, 99.3 6.9E-12 2.3E-16 87.3 8.3 68 159-226 20-101 (107)
216 3e17_A Tight junction protein 99.3 3.2E-11 1.1E-15 80.9 11.3 76 19-98 4-81 (88)
217 1wi2_A Riken cDNA 2700099C19; 99.3 1.1E-11 3.9E-16 85.8 9.3 68 158-226 26-100 (104)
218 2yuy_A RHO GTPase activating p 99.3 1.6E-12 5.4E-17 93.3 5.0 84 14-99 7-121 (126)
219 1z87_A Alpha-1-syntrophin; pro 99.3 6.5E-12 2.2E-16 100.7 9.1 85 14-99 76-164 (263)
220 2edz_A PDZ domain-containing p 99.3 6.1E-12 2.1E-16 88.6 8.0 73 155-227 21-99 (114)
221 2w4f_A Protein LAP4; structura 99.3 1.6E-11 5.5E-16 83.8 9.8 69 158-226 13-94 (97)
222 1n7t_A 99-MER peptide of densi 99.3 1.5E-11 5.1E-16 85.0 9.7 78 16-97 12-100 (103)
223 1mfg_A ERB-B2 interacting prot 99.3 1.6E-11 5.6E-16 83.5 9.8 57 168-225 36-93 (95)
224 2jre_A C60-1 PDZ domain peptid 99.3 9.3E-12 3.2E-16 86.8 8.6 70 157-226 23-105 (108)
225 2eeg_A PDZ and LIM domain prot 99.3 9.4E-12 3.2E-16 84.6 8.4 68 159-226 18-92 (94)
226 1uep_A Membrane associated gua 99.3 7.3E-12 2.5E-16 86.6 8.0 70 158-227 19-98 (103)
227 1q3o_A Shank1; PDZ, GKAP, pept 99.3 1.7E-11 5.7E-16 85.7 9.8 58 168-225 46-104 (109)
228 2fcf_A Multiple PDZ domain pro 99.3 1.6E-11 5.5E-16 84.8 9.7 60 167-226 39-100 (103)
229 1wha_A KIAA0147 protein, scrib 99.3 6.6E-12 2.2E-16 87.1 7.5 68 159-226 18-99 (105)
230 1uew_A Membrane associated gua 99.3 1.6E-11 5.3E-16 86.5 9.6 70 158-227 21-105 (114)
231 1uf1_A KIAA1526 protein; PDZ d 99.3 1.9E-11 6.4E-16 87.9 10.1 99 86-227 7-106 (128)
232 2iwq_A Multiple PDZ domain pro 99.3 2.5E-11 8.5E-16 86.6 10.6 60 167-226 59-120 (123)
233 1um7_A Synapse-associated prot 99.3 9.3E-12 3.2E-16 87.5 8.3 85 13-99 13-100 (113)
234 1x5q_A LAP4 protein; PDZ domai 99.3 2.6E-11 8.8E-16 84.8 10.5 71 157-227 24-107 (110)
235 1nf3_C PAR-6B; semi-CRIB motif 99.3 1.3E-11 4.4E-16 88.8 9.1 59 168-226 66-126 (128)
236 2eei_A PDZ domain-containing p 99.3 5.7E-12 2E-16 87.6 7.0 71 158-228 18-94 (106)
237 2r4h_A Membrane-associated gua 99.3 2.5E-11 8.5E-16 85.2 10.3 68 159-226 35-110 (112)
238 2ehr_A INAD-like protein; PDZ 99.3 2.2E-11 7.5E-16 86.1 10.1 71 157-227 25-112 (117)
239 3i4w_A Disks large homolog 4; 99.3 1.6E-11 5.4E-16 85.0 9.1 68 158-225 21-95 (104)
240 2rcz_A Tight junction protein 99.3 4.9E-11 1.7E-15 78.5 11.1 74 20-97 6-80 (81)
241 1y7n_A Amyloid beta A4 precurs 99.3 5.1E-11 1.8E-15 80.2 11.3 76 16-96 12-88 (90)
242 3l4f_D SH3 and multiple ankyri 99.3 1.6E-11 5.4E-16 88.8 9.3 59 168-226 66-125 (132)
243 2djt_A Unnamed protein product 99.3 2E-11 7E-16 84.4 9.6 68 159-226 22-99 (104)
244 3egg_C Spinophilin; PP1, serin 99.3 1.2E-11 4E-16 93.2 8.9 66 159-224 91-170 (170)
245 2cs5_A Tyrosine-protein phosph 99.3 7.5E-12 2.6E-16 88.8 7.4 72 157-228 25-109 (119)
246 2db5_A INAD-like protein; PDZ 99.3 8.5E-12 2.9E-16 89.7 7.7 68 159-226 37-116 (128)
247 2qkv_A Inactivation-NO-after-p 99.3 1.7E-11 5.7E-16 83.7 8.8 67 159-225 20-91 (96)
248 2g5m_B Neurabin-2; spinophilin 99.3 8.5E-12 2.9E-16 87.7 7.5 59 168-226 36-96 (113)
249 1wf7_A Enigma homologue protei 99.3 9.8E-12 3.4E-16 85.9 7.7 70 158-227 14-90 (103)
250 2dls_A PDZ-rhogef, RHO guanine 99.3 2.7E-11 9.2E-16 82.1 9.7 68 158-226 18-88 (93)
251 2edv_A FERM and PDZ domain-con 99.3 6.3E-12 2.2E-16 85.8 6.5 82 14-98 7-89 (96)
252 3tsv_A Tight junction protein 99.3 1.9E-11 6.5E-16 87.3 9.2 69 158-226 38-113 (124)
253 2o2t_A Multiple PDZ domain pro 99.3 1E-11 3.5E-16 87.8 7.8 70 159-228 32-113 (117)
254 2eno_A Synaptojanin-2-binding 99.3 1.4E-11 4.8E-16 87.5 8.5 68 159-226 28-108 (120)
255 1i16_A Interleukin 16, LCF; cy 99.3 9.1E-12 3.1E-16 89.8 7.4 70 158-227 39-120 (130)
256 1ueq_A Membrane associated gua 99.3 4E-11 1.4E-15 85.5 10.7 68 158-225 29-106 (123)
257 1um1_A KIAA1849 protein, RSGI 99.3 3.1E-11 1.1E-15 84.4 9.9 68 159-226 19-97 (110)
258 3hpk_A Protein interacting wit 99.3 2.3E-11 7.8E-16 87.1 9.4 69 156-224 28-104 (125)
259 2e7k_A Maguk P55 subfamily mem 99.3 2.4E-11 8.1E-16 82.1 9.0 68 157-225 16-88 (91)
260 2la8_A Inactivation-NO-after-p 99.3 1.2E-11 4.2E-16 85.9 7.6 68 158-225 13-85 (106)
261 2d92_A INAD-like protein; PDZ 99.3 1.7E-11 5.8E-16 85.5 8.3 67 159-225 26-105 (108)
262 2kpk_A Membrane-associated gua 99.3 2.4E-11 8.2E-16 87.5 9.2 68 158-225 28-105 (129)
263 2koj_A Partitioning defective 99.3 3.5E-11 1.2E-15 84.2 9.7 68 159-226 22-102 (111)
264 2dlu_A INAD-like protein; PDZ 99.3 2.2E-11 7.7E-16 85.3 8.7 70 158-227 25-100 (111)
265 1n7t_A 99-MER peptide of densi 99.3 1.7E-11 5.8E-16 84.7 7.9 57 168-225 44-101 (103)
266 2vsv_A Rhophilin-2; scaffold p 99.3 3.5E-11 1.2E-15 83.9 9.4 67 159-225 34-104 (109)
267 2pzd_A Serine protease HTRA2; 99.3 4E-11 1.4E-15 84.2 9.9 81 24-108 3-101 (113)
268 1wi4_A Synip, syntaxin binding 99.3 2.1E-11 7E-16 85.2 8.3 68 159-226 25-106 (109)
269 1va8_A Maguk P55 subfamily mem 99.3 3.2E-11 1.1E-15 84.8 9.3 69 158-226 36-109 (113)
270 2lob_A Golgi-associated PDZ an 98.9 5.1E-13 1.8E-17 93.8 0.0 87 8-95 20-110 (112)
271 1ufx_A KIAA1526 protein; PDZ d 99.3 1.7E-11 5.8E-16 84.7 7.7 69 157-225 15-97 (103)
272 2eeh_A PDZ domain-containing p 99.3 3.9E-11 1.3E-15 82.4 9.4 70 157-227 20-96 (100)
273 2gzv_A PRKCA-binding protein; 99.3 5.2E-11 1.8E-15 83.8 10.1 72 157-228 34-113 (114)
274 2z17_A Pleckstrin homology SEC 99.2 1.6E-11 5.4E-16 85.0 7.3 64 158-221 26-103 (104)
275 1wg6_A Hypothetical protein (r 99.2 1.1E-11 3.9E-16 88.9 6.7 69 158-226 36-123 (127)
276 1v6b_A Harmonin isoform A1; st 99.2 1.8E-11 6E-16 86.8 7.5 66 159-224 28-106 (118)
277 2daz_A INAD-like protein; PDZ 99.2 2.6E-11 9E-16 86.6 8.4 69 158-226 35-112 (124)
278 2dmz_A INAD-like protein; PDZ 99.2 2E-11 6.9E-16 87.9 7.9 70 157-226 25-107 (129)
279 1vae_A Rhophilin 2, rhophilin, 99.2 9.8E-12 3.4E-16 87.1 6.0 80 15-96 15-94 (111)
280 3bpu_A Membrane-associated gua 99.2 4.9E-11 1.7E-15 79.9 9.0 67 158-225 13-86 (88)
281 1whd_A RGS3, regulator of G-pr 99.2 1.4E-11 4.7E-16 84.7 6.3 68 159-226 26-96 (100)
282 2yt7_A Amyloid beta A4 precurs 99.2 6.2E-11 2.1E-15 81.6 9.5 66 159-224 21-98 (101)
283 3kzd_A TIAM-1, T-lymphoma inva 99.2 3.1E-11 1E-15 81.5 7.5 61 160-222 21-89 (94)
284 1v5l_A PDZ and LIM domain 3; a 99.2 1.1E-11 3.7E-16 85.7 5.5 70 157-226 13-89 (103)
285 1uju_A Scribble; PDZ domain, c 99.2 9.9E-12 3.4E-16 87.1 4.9 69 158-226 20-105 (111)
286 2dm8_A INAD-like protein; PDZ 99.2 2.8E-11 9.7E-16 85.4 7.2 68 159-226 28-104 (116)
287 3sfj_A TAX1-binding protein 3; 99.2 5.3E-11 1.8E-15 82.3 8.4 57 168-224 46-104 (104)
288 1x6d_A Interleukin-16; PDZ dom 99.2 4.9E-11 1.7E-15 84.6 8.5 72 156-227 24-105 (119)
289 2jxo_A Ezrin-radixin-moesin-bi 99.2 6E-11 2E-15 81.1 8.5 67 159-225 20-93 (98)
290 2krg_A Na(+)/H(+) exchange reg 99.2 9.1E-12 3.1E-16 97.3 4.9 89 11-101 5-96 (216)
291 3qik_A Phosphatidylinositol 3, 99.2 8.8E-11 3E-15 79.8 8.9 67 158-224 27-100 (101)
292 2csj_A TJP2 protein; PDZ domai 99.2 3.9E-11 1.3E-15 84.9 7.3 68 158-226 25-105 (117)
293 1v5q_A GRIP1 homolog, glutamat 99.2 6.5E-11 2.2E-15 84.3 8.6 70 158-227 26-109 (122)
294 2iwn_A Multiple PDZ domain pro 99.2 1.1E-10 3.6E-15 79.6 9.1 59 168-226 34-94 (97)
295 2kom_A Partitioning defective 99.2 1.8E-10 6.3E-15 81.9 10.6 58 168-225 59-120 (121)
296 2p3w_A Probable serine proteas 99.2 1.2E-10 4.1E-15 81.7 9.5 79 25-107 4-100 (112)
297 3r0h_A INAD, inactivation-NO-a 99.2 1.6E-10 5.5E-15 89.6 11.2 79 18-97 116-195 (206)
298 2eaq_A LIM domain only protein 99.2 5.7E-11 2E-15 79.9 7.5 67 159-225 17-89 (90)
299 3soe_A Membrane-associated gua 99.2 1.4E-10 4.9E-15 80.9 9.6 67 158-226 22-94 (113)
300 1wfv_A Membrane associated gua 99.2 2.7E-11 9.2E-16 83.6 5.7 68 159-226 22-97 (103)
301 3i18_A LMO2051 protein; alpha- 99.2 1.7E-10 5.9E-15 79.2 9.6 68 37-107 6-74 (100)
302 1tp5_A Presynaptic density pro 99.2 9.9E-11 3.4E-15 83.0 8.6 67 159-225 25-98 (119)
303 2edv_A FERM and PDZ domain-con 99.2 2.5E-11 8.6E-16 82.8 5.3 66 159-225 21-89 (96)
304 3tsz_A Tight junction protein 99.2 1.4E-10 4.7E-15 98.5 10.9 84 15-100 9-94 (391)
305 2h2b_A Tight junction protein 99.2 1.6E-10 5.5E-15 80.3 9.4 69 158-227 18-99 (107)
306 2yuy_A RHO GTPase activating p 99.2 1.6E-11 5.5E-16 88.0 4.3 60 167-226 61-121 (126)
307 1uit_A Human discs large 5 pro 99.2 1.2E-10 4E-15 82.4 8.7 69 159-227 30-103 (117)
308 2vz5_A TAX1-binding protein 3; 99.2 8.5E-11 2.9E-15 85.6 7.9 61 167-227 64-126 (139)
309 2edp_A Fragment, shroom family 99.2 3.6E-11 1.2E-15 82.6 5.6 67 159-226 21-95 (100)
310 2yub_A LIMK-2, LIM domain kina 99.2 8.9E-11 3E-15 83.1 7.4 60 168-227 45-107 (118)
311 2qbw_A PDZ-fibronectin fusion 99.2 1.8E-10 6.1E-15 88.7 9.7 55 168-223 25-80 (195)
312 2qbw_A PDZ-fibronectin fusion 99.1 4.6E-10 1.6E-14 86.3 11.8 77 27-105 2-92 (195)
313 3k1r_A Harmonin; protein-prote 99.1 1.2E-10 4E-15 89.6 8.4 68 158-226 95-169 (192)
314 3shw_A Tight junction protein 99.1 2.1E-10 7.2E-15 98.9 10.5 83 16-100 2-86 (468)
315 1z87_A Alpha-1-syntrophin; pro 99.1 9.6E-11 3.3E-15 93.9 7.7 70 157-226 87-164 (263)
316 2kjp_A Uncharacterized protein 99.1 2.8E-11 9.6E-16 81.7 3.9 66 39-107 2-68 (91)
317 3gsl_A Disks large homolog 4; 99.1 7E-10 2.4E-14 85.1 12.2 82 18-101 103-193 (196)
318 1wif_A RSGI RUH-020, riken cDN 99.1 9.2E-11 3.1E-15 83.8 6.5 66 159-224 38-110 (126)
319 2i6v_A General secretion pathw 99.1 2.3E-10 8E-15 76.4 8.1 66 38-105 19-85 (87)
320 1ujv_A Membrane associated gua 99.1 5.3E-10 1.8E-14 76.1 9.9 66 159-226 21-92 (96)
321 3stj_A Protease DEGQ; serine p 99.1 3.3E-10 1.1E-14 94.7 9.9 83 23-107 236-331 (345)
322 1um7_A Synapse-associated prot 99.1 1.5E-10 5.1E-15 81.2 6.6 68 159-226 26-100 (113)
323 2zpm_A Regulator of sigma E pr 99.1 2.4E-10 8.2E-15 77.0 7.4 67 39-107 5-71 (91)
324 1vae_A Rhophilin 2, rhophilin, 99.1 1.4E-10 4.6E-15 81.2 6.2 68 158-225 25-96 (111)
325 2kl1_A YLBL protein; structure 99.1 2.1E-10 7.1E-15 77.8 6.8 69 37-108 4-73 (94)
326 2d8i_A T-cell lymphoma invasio 99.1 1.1E-10 3.9E-15 82.0 5.6 64 160-225 30-101 (114)
327 1x5n_A Harmonin; PDZ domain, u 99.1 4.7E-10 1.6E-14 78.8 8.6 66 158-224 26-98 (114)
328 1qau_A Neuronal nitric oxide s 99.1 5.3E-10 1.8E-14 78.3 8.8 69 158-226 12-88 (112)
329 2lob_A Golgi-associated PDZ an 98.7 1.1E-11 3.6E-16 87.1 0.0 66 157-222 37-110 (112)
330 2qt5_A Glutamate receptor-inte 99.1 6.6E-10 2.3E-14 85.8 10.0 73 153-225 13-93 (200)
331 1uez_A KIAA1526 protein; PDZ d 99.1 1.9E-10 6.5E-15 79.1 6.0 69 158-227 20-95 (101)
332 1te0_A Protease DEGS; two doma 99.1 5.7E-10 1.9E-14 92.4 9.9 82 24-107 218-312 (318)
333 3id1_A Regulator of sigma E pr 99.1 8.3E-10 2.8E-14 75.0 8.9 64 40-105 4-70 (95)
334 1y8t_A Hypothetical protein RV 99.1 8.3E-10 2.8E-14 91.6 10.2 82 24-107 226-311 (324)
335 2i4s_A General secretion pathw 99.1 1.2E-09 4.2E-14 75.6 9.4 76 28-105 24-103 (105)
336 1p1d_A PDZ45, glutamate recept 99.0 1.7E-09 5.7E-14 83.3 10.8 80 18-98 110-195 (196)
337 3rle_A Golgi reassembly-stacki 99.0 1.7E-09 5.9E-14 84.1 10.6 93 26-121 94-199 (209)
338 2kjd_A Sodium/hydrogen exchang 99.0 1.2E-09 4.2E-14 78.3 9.0 67 159-225 20-93 (128)
339 1fc6_A Photosystem II D1 prote 99.0 2.3E-09 7.8E-14 91.1 11.9 84 25-108 83-172 (388)
340 3qo6_A Protease DO-like 1, chl 99.0 1.1E-09 3.6E-14 91.8 9.5 83 23-107 229-330 (348)
341 3tsz_A Tight junction protein 99.0 1.1E-09 3.9E-14 92.8 9.2 67 159-225 19-92 (391)
342 3shw_A Tight junction protein 99.0 9.5E-10 3.2E-14 94.9 8.5 67 159-225 11-84 (468)
343 1wh1_A KIAA1095 protein; PDZ d 99.0 6.1E-10 2.1E-14 79.5 5.1 65 160-226 33-108 (124)
344 1w9e_A Syntenin 1; cell adhesi 98.9 5.4E-09 1.8E-13 78.3 9.8 68 157-224 14-86 (166)
345 2pzd_A Serine protease HTRA2; 98.9 6E-10 2.1E-14 78.1 4.1 57 167-226 35-92 (113)
346 2hga_A Conserved protein MTH13 98.9 7.8E-09 2.7E-13 73.7 9.8 66 37-107 24-90 (125)
347 4fgm_A Aminopeptidase N family 98.9 1.1E-08 3.6E-13 91.4 12.8 80 26-108 484-564 (597)
348 1b8q_A Protein (neuronal nitri 98.9 1.3E-09 4.3E-14 78.1 5.4 69 159-227 20-96 (127)
349 2kjp_A Uncharacterized protein 98.9 6.4E-10 2.2E-14 74.9 3.3 54 171-227 6-61 (91)
350 3id1_A Regulator of sigma E pr 98.9 4.8E-09 1.7E-13 71.2 7.7 54 170-225 6-61 (95)
351 1lcy_A HTRA2 serine protease; 98.9 8.1E-09 2.8E-13 85.7 9.6 81 23-107 223-321 (325)
352 3i18_A LMO2051 protein; alpha- 98.9 5.5E-09 1.9E-13 71.6 7.1 57 167-226 7-66 (100)
353 2l97_A HTRA, putative serine p 98.9 3.7E-09 1.3E-13 76.4 6.5 58 167-227 57-117 (134)
354 2p3w_A Probable serine proteas 98.8 1.7E-09 5.8E-14 75.7 3.7 57 167-226 35-92 (112)
355 2krg_A Na(+)/H(+) exchange reg 98.8 2.9E-09 1E-13 83.0 5.2 67 159-225 20-93 (216)
356 2i6v_A General secretion pathw 98.8 3.7E-09 1.2E-13 70.5 5.0 52 173-226 26-79 (87)
357 2kl1_A YLBL protein; structure 98.8 3.8E-09 1.3E-13 71.5 4.6 56 168-226 6-64 (94)
358 2zpm_A Regulator of sigma E pr 98.8 7.6E-09 2.6E-13 69.5 5.8 55 170-226 8-63 (91)
359 1te0_A Protease DEGS; two doma 98.8 1.3E-08 4.5E-13 84.2 8.1 79 147-227 224-305 (318)
360 3stj_A Protease DEGQ; serine p 98.7 5.4E-09 1.8E-13 87.4 4.4 60 166-227 262-324 (345)
361 2i4s_A General secretion pathw 98.7 1.6E-08 5.4E-13 69.9 5.6 52 173-226 44-97 (105)
362 3num_A Serine protease HTRA1; 98.7 1.8E-09 6.2E-14 89.9 0.0 67 38-108 254-320 (332)
363 4a8c_A Periplasmic PH-dependen 98.6 9.9E-08 3.4E-12 82.2 9.4 69 38-109 363-431 (436)
364 3pv2_A DEGQ; trypsin fold, PDZ 98.6 1.3E-07 4.4E-12 81.8 8.3 65 38-105 386-450 (451)
365 2hga_A Conserved protein MTH13 98.6 1.4E-07 4.8E-12 67.1 7.1 55 168-226 26-83 (125)
366 3k50_A Putative S41 protease; 98.6 1E-07 3.5E-12 81.1 7.3 70 26-99 73-147 (403)
367 3suz_A Amyloid beta A4 precurs 98.5 5.1E-08 1.7E-12 82.8 3.5 68 158-225 215-294 (388)
368 1y8t_A Hypothetical protein RV 98.5 3.5E-07 1.2E-11 75.7 8.4 67 158-226 228-303 (324)
369 1lcy_A HTRA2 serine protease; 98.5 1.6E-07 5.6E-12 77.8 6.0 58 167-227 256-314 (325)
370 1fc6_A Photosystem II D1 prote 98.4 5.7E-07 1.9E-11 76.3 8.7 59 168-226 100-160 (388)
371 1k32_A Tricorn protease; prote 98.4 1.3E-06 4.6E-11 82.7 10.3 82 23-107 733-825 (1045)
372 4fgm_A Aminopeptidase N family 98.3 8E-07 2.7E-11 79.3 7.1 66 159-227 485-556 (597)
373 3qo6_A Protease DO-like 1, chl 98.3 7.4E-07 2.5E-11 74.5 5.9 59 167-227 251-323 (348)
374 1ky9_A Protease DO, DEGP, HTRA 98.3 9.5E-08 3.3E-12 82.5 -0.2 64 161-226 280-346 (448)
375 3num_A Serine protease HTRA1; 98.2 1.3E-07 4.4E-12 78.6 0.0 57 167-226 254-311 (332)
376 3k50_A Putative S41 protease; 98.1 1.5E-06 5.1E-11 73.9 3.3 54 170-226 94-147 (403)
377 1k32_A Tricorn protease; prote 97.5 0.00017 5.8E-09 68.3 7.5 63 160-225 738-815 (1045)
378 4fln_A Protease DO-like 2, chl 97.3 0.00042 1.4E-08 60.9 6.7 57 38-96 415-471 (539)
379 3dor_A Protein CT_858, CPAF; m 70.4 5.5 0.00019 35.1 4.9 43 27-73 84-127 (583)
380 3dor_A Protein CT_858, CPAF; m 33.9 42 0.0014 29.6 4.3 16 183-198 109-124 (583)
381 2j3t_D Trafficking protein par 26.5 1.4E+02 0.005 22.6 5.7 70 21-96 28-100 (219)
382 1uhe_A Aspartate 1-decarboxyla 26.1 44 0.0015 21.9 2.3 56 131-198 8-67 (97)
383 1pqh_A Aspartate 1-decarboxyla 25.6 1.5E+02 0.0051 20.7 5.1 58 131-198 50-110 (143)
384 2vga_A Protein A41, A41; immun 23.8 39 0.0013 23.5 1.8 37 195-231 94-130 (207)
385 2j3t_D Trafficking protein par 22.9 54 0.0018 25.0 2.7 45 179-223 52-100 (219)
386 1vc3_B L-aspartate-alpha-decar 20.9 1.7E+02 0.0059 19.0 4.4 57 131-198 9-69 (96)
387 3oug_A Aspartate 1-decarboxyla 20.1 1.8E+02 0.0063 19.5 4.5 57 131-198 36-96 (114)
No 1
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.96 E-value=1e-26 Score=212.15 Aligned_cols=211 Identities=20% Similarity=0.307 Sum_probs=173.2
Q ss_pred cccceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy2263 12 KYHQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL 82 (232)
Q Consensus 12 ~~~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l 82 (232)
.....+++.+.+.. ++|||++.++ ..+++|..|.+++||+++| |+.||+|++|||.++.++++.++..++
T Consensus 56 ~~~~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 134 (721)
T 2xkx_A 56 GEMEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 134 (721)
T ss_pred CCceEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence 44566788888887 5799999863 4679999999999999999 999999999999999999988888877
Q ss_pred hhCCCCeEEEEEecCCc----eeeeEeecCCCCeeCeEEeC-----------Ce-EEEEecCChhhhcC-CCCCCEEEEE
Q psy2263 83 RNCPVNNISIVVRDRPF----ERNVTLHKDSAGHVGFQFKR-----------GQ-IIRLVKESSASRNG-LLTDHHILEV 145 (232)
Q Consensus 83 ~~~~~~~v~l~v~r~~~----~~~v~l~~~~~~~lg~~~~~-----------~~-~~~~~~~~~a~~~g-l~~gd~i~~v 145 (232)
+. .+..+.|++.|.+. +.++.+.+.. ..+|+.+.. |. +..+.++++|+++| |+.||+|++|
T Consensus 135 ~~-~g~~v~l~v~R~~~~~~~~~~v~l~k~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V 212 (721)
T 2xkx_A 135 KE-AGSIVRLYVMRRKPPAEKVMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 212 (721)
T ss_pred hc-cccccceEEEecccccccceeeeeeeec-CCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEE
Confidence 74 47889999988653 4567776543 348888753 23 45788999999999 9999999999
Q ss_pred CCeEeecccc----------------------cC----------------------------------------------
Q psy2263 146 NGQNVVGLKN----------------------DS---------------------------------------------- 157 (232)
Q Consensus 146 ~g~~~~~~~~----------------------~~---------------------------------------------- 157 (232)
||.++.++.+ ..
T Consensus 213 ng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (721)
T 2xkx_A 213 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYS 292 (721)
T ss_pred CCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCcccccCCCCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccC
Confidence 9999877532 00
Q ss_pred ------------------------CCccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHH
Q psy2263 158 ------------------------AGHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEI 206 (232)
Q Consensus 158 ------------------------~~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~ 206 (232)
...+||.+. .|+++. |.++|+|+++| |++||+|++|||.++.+++++++
T Consensus 293 p~~~~~~~~~~~~~~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~ 372 (721)
T 2xkx_A 293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 372 (721)
T ss_pred CcccccccccccccceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHH
Confidence 012566653 356666 99999999999 99999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEeCCc
Q psy2263 207 REIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 207 ~~~l~~~~~~~~l~v~r~~ 225 (232)
+++|+..+..+.|.+.|+.
T Consensus 373 ~~~l~~~~~~v~L~v~r~~ 391 (721)
T 2xkx_A 373 AIALKNAGQTVTIIAQYKP 391 (721)
T ss_pred HHHHHhcCCeEEEEEEeCc
Confidence 9999998889999998765
No 2
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.95 E-value=2.5e-25 Score=168.36 Aligned_cols=163 Identities=55% Similarity=0.938 Sum_probs=136.4
Q ss_pred cceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
..+|++.+.+..++|||+.+.....+++|..|.++|||+++||+.||+|++|||+++.++++.....+++..+++.+.++
T Consensus 3 ~~~r~v~l~k~~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~ 82 (166)
T 1w9e_A 3 MDPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT 82 (166)
T ss_dssp CCCEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred CCCEEEEEEeCCCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEE
Confidence 45789999999999999999988899999999999999999999999999999999999987556677776677899999
Q ss_pred EecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEEE
Q psy2263 94 VRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRL 173 (232)
Q Consensus 94 v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~v 173 (232)
++|.+++.++.+.++....+|+ .+..|.+..+
T Consensus 83 vr~~~~~~~v~l~~~~~~~lG~------------------------------------------------~~~~g~v~~v 114 (166)
T 1w9e_A 83 IRDRPFERTITMHKDSTGHVGF------------------------------------------------IFKNGKITSI 114 (166)
T ss_dssp EECCTTCEEEEEECCTTSCCSE------------------------------------------------EEETTEEEEE
T ss_pred EEcCCCcEEEEEecCCCCcEeE------------------------------------------------EEeCCEEEEE
Confidence 9655577777766433233333 3333435559
Q ss_pred ccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 174 VKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 174 ~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
.++|||+++||++||+|++|||.++.+++++++...+...+..+.+.+.+.
T Consensus 115 ~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~~~ 165 (166)
T 1w9e_A 115 VKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 165 (166)
T ss_dssp CTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred ccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEEEC
Confidence 999999999999999999999999999999999999999888888887653
No 3
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.94 E-value=3.2e-25 Score=171.89 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=134.4
Q ss_pred cceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
..++++.+.+.. .+|||++... ..+++|..|.|+|||+++| |+.||+|++|||+++.++++......++.
T Consensus 4 ~~~~~v~l~~~~-~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 82 (196)
T 3gsl_A 4 MEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 82 (196)
T ss_dssp EEEEEEEEECBT-TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred cEEEEEEEEECC-CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 356778888875 4599999874 3589999999999999999 99999999999999999998777766664
Q ss_pred CCCCeEEEEEecCC--c--eeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCc
Q psy2263 85 CPVNNISIVVRDRP--F--ERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGH 160 (232)
Q Consensus 85 ~~~~~v~l~v~r~~--~--~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~ 160 (232)
.+..+.+++.|+. . ..++.+.+... .+|+.+..+. ... .
T Consensus 83 -~g~~v~l~v~r~~~~~~~~~~v~l~~~~~-~lG~~~~~~~------~~~-----~------------------------ 125 (196)
T 3gsl_A 83 -AGSIVRLYVMRRKPPAEKVMEIKLIKGPK-GLGFSIAGGV------GNQ-----H------------------------ 125 (196)
T ss_dssp -SCSEEEEEEEEECCCCEEEEEEEEEEBTT-BSCEEEEESB------TSC-----S------------------------
T ss_pred -CCCcEEEEEEecCCCccccEEEEEecCCC-CceEEEEccC------CCc-----C------------------------
Confidence 4789999998854 2 33444444333 4666554211 000 0
Q ss_pred cceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 161 VGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 161 ~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
.....|+++. |.++|||+++| |++||+|++|||+++.+++++++++++++.+..+.|.+.|+....
T Consensus 126 --~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 193 (196)
T 3gsl_A 126 --IPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAE 193 (196)
T ss_dssp --BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEESCCC
T ss_pred --CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCCcc
Confidence 0001234555 99999999999 999999999999999999999999999998889999998876543
No 4
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.93 E-value=4.2e-24 Score=167.07 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=133.0
Q ss_pred CCcccccccceEEEEEEeeCCCccceEEeecC-----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCC--CCHHH
Q psy2263 6 PSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIH-----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAG--SNMHQ 77 (232)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~-----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~--~~~~~ 77 (232)
|+-.-+.......+.+.+. ..+|||++..+. .+++|..|.++|||+++| |+.||+|++|||+++.+ +++.+
T Consensus 9 p~~~~~~~~~~~~v~~~~~-~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~ 87 (206)
T 3r0h_A 9 PATAEIKPNKKILIELKVE-KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLK 87 (206)
T ss_dssp TTTCCCCTTSCEEEEEECT-TSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHH
T ss_pred CCcCCCCCCCEEEEEEEeC-CCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHH
Confidence 3344455556677778775 577999997632 479999999999999998 99999999999999999 77877
Q ss_pred HHHHHhhCCCCeEEEEEecCCce----eeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecc
Q psy2263 78 VHALLRNCPVNNISIVVRDRPFE----RNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153 (232)
Q Consensus 78 ~~~~l~~~~~~~v~l~v~r~~~~----~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~ 153 (232)
+...++...+..+.|++.|++.. +++.+.+.....+|+.+..+
T Consensus 88 ~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~~~~~lG~~~~~~--------------------------------- 134 (206)
T 3r0h_A 88 VHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN--------------------------------- 134 (206)
T ss_dssp HHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECCTTCCCCEEEEEC---------------------------------
T ss_pred HHHHHHhcCCCceEEEEEecccCCCcEEEEEEecCCCCccCeEEEcC---------------------------------
Confidence 77777754444499999986543 23333332222344433210
Q ss_pred cccCCCccceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 154 KNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 154 ~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..|.++. |.++|+|+++| |++||+|++|||+++.+++++++..+++..+..+.|.|.|..
T Consensus 135 ------------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~ 196 (206)
T 3r0h_A 135 ------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPK 196 (206)
T ss_dssp ------------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEC
T ss_pred ------------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 1234555 99999999999 999999999999999999999999999998899999998744
No 5
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.93 E-value=6.3e-24 Score=164.87 Aligned_cols=171 Identities=19% Similarity=0.324 Sum_probs=133.2
Q ss_pred ceEEEEEEeeCCCccceEEeec-------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI-------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~-------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
..+.+.+.+.+..+|||.+... ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++...
T Consensus 6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 85 (196)
T 1p1d_A 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS 85 (196)
T ss_dssp EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4567888999889999999874 3578999999999999999 9999999999999999776678888888765
Q ss_pred -CCeEEEEEecCCce--------eeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccC
Q psy2263 87 -VNNISIVVRDRPFE--------RNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDS 157 (232)
Q Consensus 87 -~~~v~l~v~r~~~~--------~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~ 157 (232)
+..+.+++.|++.. .++.+.......+|+.+..+. ...
T Consensus 86 ~g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~lG~~~~~~~---------------------------------~~~ 132 (196)
T 1p1d_A 86 ITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPS---------------------------------SRK 132 (196)
T ss_dssp SSSEEEEEEEECSCSCCBCCSSCEEEEECCCSSCCCCCEEECSC---------------------------------SSS
T ss_pred CCCeEEEEEEecCCCCCCCCCCcEEEEecCCCCCCcCEEEECCC---------------------------------CCC
Confidence 78999999987643 223332222222333332110 000
Q ss_pred CCccceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
...|.++. |.++|||+++| |++||+|++|||.++.+++++++.++++..+..+.|.+.|+.
T Consensus 133 -------~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 195 (196)
T 1p1d_A 133 -------PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195 (196)
T ss_dssp -------TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred -------CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 01234555 99999999999 999999999999999998889999999988888999998864
No 6
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.92 E-value=3.9e-23 Score=160.87 Aligned_cols=172 Identities=25% Similarity=0.288 Sum_probs=131.2
Q ss_pred cceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
...+.+.+.+...++|||++... ..+++|..|.++|||+++ ||+.||+|++|||+++.++++.++..+++. .+..
T Consensus 6 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~ 84 (200)
T 2qt5_A 6 KGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGER 84 (200)
T ss_dssp EEEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSE
T ss_pred CCCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCe
Confidence 34677888888889999999863 357899999999999999 899999999999999999988788877764 4789
Q ss_pred EEEEEecCCc------------eeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccC
Q psy2263 90 ISIVVRDRPF------------ERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDS 157 (232)
Q Consensus 90 v~l~v~r~~~------------~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~ 157 (232)
+.|++.|+.. +..+.+.. ....+|+.+..+. . + + .
T Consensus 85 v~l~v~R~~~~~~~~g~~~~~~~~~v~l~~-~~~~lG~~l~~g~-----~--~----------------------~---~ 131 (200)
T 2qt5_A 85 VVLEVEYELPPVSIQGSSVMFRTVEVTLHK-EGNTFGFVIRGGA-----H--D----------------------D---R 131 (200)
T ss_dssp EEEEEEEECCCCCCCCSSEEEEEEEEEEEC-BTTBCSEEEEEEC-----C--S----------------------S---T
T ss_pred EEEEEeccCCCcccCCCccceeEEEEEEec-CCCCeEEEEECCC-----C--C----------------------C---c
Confidence 9999988542 22333322 1223444432110 0 0 0 0
Q ss_pred CCccceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
.. ..|.++. |.++|||+++| |++||+|++|||.++.+++++++.++|+..+..+.|.+.|+.
T Consensus 132 ~~------~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 132 NK------SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDV 195 (200)
T ss_dssp TT------CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred cC------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 00 1133555 99999999999 999999999999999988999999999997788999998865
No 7
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.91 E-value=3.8e-25 Score=188.26 Aligned_cols=170 Identities=25% Similarity=0.431 Sum_probs=75.8
Q ss_pred ccceEEEEEEeeCCCccceEEeecC-----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIH-----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC- 85 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~-----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~- 85 (232)
...++.+.+.+.++++||+.+.... .+++|..|.++|||+++| |+.||+|++|||.++.+|++.++..+++..
T Consensus 202 ~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~ 281 (388)
T 3suz_A 202 SENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK 281 (388)
T ss_dssp SSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred cccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence 3457889999988889999987743 348999999999999999 999999999999999999877788888765
Q ss_pred CCCeEEEEEecCCceeeeEeec-CCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceE
Q psy2263 86 PVNNISIVVRDRPFERNVTLHK-DSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQ 164 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v~l~~-~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~ 164 (232)
.+..+.|++.|.+.+.++.+.. ... +.+||.
T Consensus 282 ~~~~v~l~v~r~~~~~~v~l~~~~~~------------------------------------------------~~lG~~ 313 (388)
T 3suz_A 282 NQTQVKLNIVSCPPVTTVLIKRPDLK------------------------------------------------YQLGFS 313 (388)
T ss_dssp TCSCEEEEEEECCSCC----------------------------------------------------------------
T ss_pred CCCccccccccccccceeeEeecCCC------------------------------------------------CccceE
Confidence 4677999999977665554421 111 123444
Q ss_pred EecCcEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccccc
Q psy2263 165 FKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHM 230 (232)
Q Consensus 165 ~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~~~ 230 (232)
+.+|.+..|.++|||+++||++||+|++|||+++.+.+|++++++|+..++.+.|.+.+...|+.+
T Consensus 314 i~~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~~~~~ll 379 (388)
T 3suz_A 314 VQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLL 379 (388)
T ss_dssp ------------------------------------------------------------------
T ss_pred EecCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeccccccc
Confidence 444556679999999999999999999999999999999999999999999999999988887654
No 8
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=99.84 E-value=5e-20 Score=159.50 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=126.3
Q ss_pred eeCCCccceEEeecC-------------CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCC
Q psy2263 23 KDIHGKIGLRVAAIH-------------EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVN 88 (232)
Q Consensus 23 ~~~~~~lGi~~~~~~-------------~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~ 88 (232)
+..++|||+.+.... .|++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. .+++
T Consensus 254 ~v~r~~lGv~~~~~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~ 331 (451)
T 3pv2_A 254 SIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGS 331 (451)
T ss_dssp SCCCCBCCEEEEECCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTC
T ss_pred CcccccccceEEeccHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCC
Confidence 456899999987632 689999999999999999999999999999999988 456666664 4589
Q ss_pred eEEEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecC
Q psy2263 89 NISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG 168 (232)
Q Consensus 89 ~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g 168 (232)
.+.+++.|++++.++.+........... ........ .|..+..+...... .....|
T Consensus 332 ~v~l~V~R~g~~~~~~v~l~~~~~~~~~-------------~~~~~~~~--------~G~~l~~~~~~~~~---~~~~~G 387 (451)
T 3pv2_A 332 TVKIIVERDNKPLTLSAVVTDIKSHEQK-------------LQSNNPFL--------YGLALRAFEQESPP---HGNVIG 387 (451)
T ss_dssp EEEEEEEETTEEEEEEEECBCHHHHHHH-------------HHHHSTTT--------TTEEEEEEEEECTT---SCEEEE
T ss_pred EEEEEEEECCEEEEEEEEEccCCccccc-------------cccccccc--------cccccccCChhHhc---ccCCCc
Confidence 9999999998888776654321100000 00000000 11111111110000 011235
Q ss_pred cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 169 QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 169 ~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.++. |.++|||+++||++||+|++|||+++.++ +++.++++..+..+.|.+.|+...
T Consensus 388 v~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~ 445 (451)
T 3pv2_A 388 VQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLRGPGS 445 (451)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTSSCSCEEEEEEETTEE
T ss_pred eEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhcCCCeEEEEEEECCEE
Confidence 5555 99999999999999999999999999988 999999998888899999887643
No 9
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.84 E-value=1.1e-19 Score=157.03 Aligned_cols=174 Identities=22% Similarity=0.317 Sum_probs=124.9
Q ss_pred EeeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCC
Q psy2263 22 CKDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVN 88 (232)
Q Consensus 22 ~~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~ 88 (232)
.+..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||+++.++. ++...+.. .+++
T Consensus 235 g~v~r~~lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~--~l~~~l~~~~~g~ 312 (436)
T 4a8c_A 235 GEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFA--ELRSRIATTEPGT 312 (436)
T ss_pred cccccccCceEecccCHHHHHHhCCCCCcceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCC
Confidence 345678999998652 26899999999999999999999999999999999884 46655554 3589
Q ss_pred eEEEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecC
Q psy2263 89 NISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG 168 (232)
Q Consensus 89 ~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g 168 (232)
.+.+++.|+++..++.+............ ..+..|- .+..+..... . ....|
T Consensus 313 ~v~l~v~R~g~~~~~~v~l~~~~~~~~~~----------------~~~~~gl-----~~~~~~~~~~-~------~~~~g 364 (436)
T 4a8c_A 313 KVKLGLLRNGKPLEVEVTLDTSTSSSASA----------------EMITPAL-----EGATLSDGQL-K------DGGKG 364 (436)
T ss_pred EEEEEEEECCEEEEEEEEECCCCcccccc----------------cccccCc-----eeeecccccc-c------CCCCC
Confidence 99999999988877766543221100000 0000110 0111100000 0 01134
Q ss_pred cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 169 QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 169 ~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.++. |.++|||+++||++||+|++|||+++.++ +++.++++..+..+.|.+.|+...
T Consensus 365 v~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~ 422 (436)
T 4a8c_A 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNES 422 (436)
T ss_pred EEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 5555 99999999999999999999999999988 999999999888899999887643
No 10
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.81 E-value=8.9e-19 Score=137.04 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=107.6
Q ss_pred CCceEEEEecCCCHHhhcCCCCC-CEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCC--ceeeeEeecCC----
Q psy2263 37 HEGVFVCLVQEGSPAALVGLRFG-DQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP--FERNVTLHKDS---- 109 (232)
Q Consensus 37 ~~g~~V~~V~~~s~A~~agL~~G-D~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~--~~~~v~l~~~~---- 109 (232)
..|++|..|.++|||+++||+.| |+|++|||+++.++++ ....++...++..+.+++.|+. ...++.+.+..
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~-~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~ 93 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGG 93 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSS-HHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSS
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHH-HHHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccc
Confidence 46899999999999999999999 9999999999999876 4455666666899999998854 45555553321
Q ss_pred CCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcEEE-EccCChhhhCCCCC-C
Q psy2263 110 AGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLT-D 187 (232)
Q Consensus 110 ~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~-G 187 (232)
...+|+.+. ..+..... ..|.++. |.++|||+++||++ |
T Consensus 94 ~~~lGi~~~---------------------------------~~~~~~~~------~~Gv~V~~V~~~spA~~aGl~~~G 134 (209)
T 3rle_A 94 QGLLGVSIR---------------------------------FCSFDGAN------ENVWHVLEVESNSPAALAGLRPHS 134 (209)
T ss_dssp SSSSCEEEE---------------------------------EEECTTGG------GSCEEEEEECTTSHHHHHTCCTTT
T ss_pred cCccceEEe---------------------------------ecChhHcc------ccceEEEEeCCCChHHHCCCCCCC
Confidence 112333221 11000000 0244444 99999999999999 9
Q ss_pred CEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCc
Q psy2263 188 HHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSY 225 (232)
Q Consensus 188 D~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~ 225 (232)
|+|++|||. +.+. +++.++++.. +..+.|.+.|+.
T Consensus 135 D~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~ 170 (209)
T 3rle_A 135 DYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTD 170 (209)
T ss_dssp EEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETT
T ss_pred CEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECC
Confidence 999999998 8887 8999999875 667999997753
No 11
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=99.74 E-value=3.6e-19 Score=154.06 Aligned_cols=169 Identities=21% Similarity=0.316 Sum_probs=66.6
Q ss_pred eCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeE
Q psy2263 24 DIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNI 90 (232)
Q Consensus 24 ~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v 90 (232)
..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. .+++.+
T Consensus 260 v~~~~LGv~~~~~~~~~a~~lgl~~~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v 337 (448)
T 1ky9_A 260 VKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKL 337 (448)
T ss_dssp CCBCCCCCSCCCTTSHHHHTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCC
T ss_pred cceeccccccccccHHHHHHhCCCCCCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEE
Confidence 4567889887642 2589999999999999999999999999999999998 457767764 358899
Q ss_pred EEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEEecCcE
Q psy2263 91 SIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQI 170 (232)
Q Consensus 91 ~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~~~g~v 170 (232)
.|++.|++++.++.+........ .. ... +....+.|..+..+. -..|.+
T Consensus 338 ~l~v~R~g~~~~~~v~~~~~~~~--~~--------~~~-----------~~~~~~~G~~l~~~~----------~~~gv~ 386 (448)
T 1ky9_A 338 TLGLLRDGKQVNVNLELQQSSQN--QV--------DSS-----------SIFNGIEGAEMSNKG----------KDQGVV 386 (448)
T ss_dssp EEEEESSSCEEECCCC----------------------------------------------------------------
T ss_pred EEEEEECCEEEEEEEEEecCCCc--cc--------ccc-----------cccccccceEeeccC----------CCCeEE
Confidence 99999988776665543211100 00 000 000001111111110 023455
Q ss_pred EE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 171 IR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 171 ~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
+. |.++|||+++||++||+|++|||+++.++ +++.++++..+..+.|.+.|+...
T Consensus 387 V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~~v~l~v~R~g~~ 442 (448)
T 1ky9_A 387 VNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGDST 442 (448)
T ss_dssp ----------------------------------------------------------
T ss_pred EEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCCeEEEEEEECCEE
Confidence 55 99999999999999999999999999987 999999988777888988887653
No 12
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.65 E-value=9.8e-16 Score=101.25 Aligned_cols=69 Identities=59% Similarity=0.994 Sum_probs=64.0
Q ss_pred cCCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 156 DSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 156 ~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...+.+||.+.+|.+.++.+++||+++||++||+|++|||+++.+++|++++++|++.+..++|++.+.
T Consensus 13 ~~~g~~Gf~i~~g~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p~ 81 (82)
T 1r6j_A 13 DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81 (82)
T ss_dssp CTTSCCCEEEETTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred CCCCCeEEEEECCEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEeC
Confidence 345679999999998889999999999999999999999999999999999999999999999999764
No 13
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=99.61 E-value=4.8e-15 Score=129.83 Aligned_cols=185 Identities=15% Similarity=0.184 Sum_probs=114.5
Q ss_pred CCccceEEeec-------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCH--------HHHHHHHhh
Q psy2263 26 HGKIGLRVAAI-------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNM--------HQVHALLRN 84 (232)
Q Consensus 26 ~~~lGi~~~~~-------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~--------~~~~~~l~~ 84 (232)
++|||+.+... ..|++|..|.|+|||+++ |+.||.|+++||+++.+... ..+..++..
T Consensus 252 r~~LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~ 330 (539)
T 4fln_A 252 YPCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ 330 (539)
T ss_dssp CCBCCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred eeecceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence 78999998652 268999999999999886 99999999999999976421 113344443
Q ss_pred -CCCCeEEEEEecCCceeeeEeecCCCCee------C----eEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecc
Q psy2263 85 -CPVNNISIVVRDRPFERNVTLHKDSAGHV------G----FQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153 (232)
Q Consensus 85 -~~~~~v~l~v~r~~~~~~v~l~~~~~~~l------g----~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~ 153 (232)
.+|+.+.|++.|++++.++.+.-.+.... + +....|.....+....+.+.+. +...+.-+
T Consensus 331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~---------~~~~~~l~ 401 (539)
T 4fln_A 331 KFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECE---------DTIGLKLL 401 (539)
T ss_dssp SCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCS---------SSSCHHHH
T ss_pred CCCCCEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcc---------cccCceee
Confidence 46999999999999888777654322110 0 0000111111110000000000 00000000
Q ss_pred cccCCCccceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe-EEEEEe
Q psy2263 154 KNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV-INLTIM 222 (232)
Q Consensus 154 ~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~-~~l~v~ 222 (232)
.........+.-..|++++ |.++++|+.+|+++||+|++|||+++.++ +++.+++++..+. +.+.+.
T Consensus 402 ~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~ 470 (539)
T 4fln_A 402 TKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFE 470 (539)
T ss_dssp HHHHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEET
T ss_pred ehhhhhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEEC
Confidence 0000000000001355666 99999999999999999999999999999 9999999987665 555443
No 14
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.60 E-value=1.3e-14 Score=97.71 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=73.3
Q ss_pred eEEEEEEeeCCCccceEEeec-CCceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI-HEGVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~-~~g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
+|.+.+.|.+.++||+++... ..+++|..|.++|||++ +||++||+|++|||.++.++++.++..+++..++ .+.|+
T Consensus 2 ~r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~ 80 (88)
T 1kwa_A 2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFK 80 (88)
T ss_dssp CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEE
T ss_pred eEEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEE
Confidence 578999999888999999873 46799999999999999 7899999999999999998888899999988765 88888
Q ss_pred EecCCc
Q psy2263 94 VRDRPF 99 (232)
Q Consensus 94 v~r~~~ 99 (232)
+.|...
T Consensus 81 v~r~~~ 86 (88)
T 1kwa_A 81 IVPSYR 86 (88)
T ss_dssp EECCCC
T ss_pred EECCcC
Confidence 887543
No 15
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.59 E-value=1.2e-14 Score=95.94 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=69.2
Q ss_pred ceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.+|.+++.|.+.++|||++.. + +|..+.+++||+++||+.||+|++|||+++.+++++++.++++ ..+..+.|++
T Consensus 4 ~~r~v~l~k~~~g~~Gf~i~~---g-~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v 78 (82)
T 1r6j_A 4 DPRTITMHKDSTGHVGFIFKN---G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITI 78 (82)
T ss_dssp CCEEEEEECCTTSCCCEEEET---T-EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEE
T ss_pred ceEEEEEEECCCCCeEEEEEC---C-EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEE
Confidence 478999999999999999875 3 4789999999999999999999999999999999999999999 4678899988
Q ss_pred ec
Q psy2263 95 RD 96 (232)
Q Consensus 95 ~r 96 (232)
..
T Consensus 79 ~p 80 (82)
T 1r6j_A 79 MP 80 (82)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 16
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.58 E-value=2.9e-14 Score=130.16 Aligned_cols=127 Identities=20% Similarity=0.352 Sum_probs=104.0
Q ss_pred ceeeeEeecCCCCeeCeEEeCC-----------e-EEEEecCChhhhcC-CCCCCEEEEECCeEeeccccc---------
Q psy2263 99 FERNVTLHKDSAGHVGFQFKRG-----------Q-IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKND--------- 156 (232)
Q Consensus 99 ~~~~v~l~~~~~~~lg~~~~~~-----------~-~~~~~~~~~a~~~g-l~~gd~i~~v~g~~~~~~~~~--------- 156 (232)
..+++.+.+.. ..+||.+..| . +..+.+++||+++| |+.||+|++|||.++.++++.
T Consensus 59 ~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 137 (721)
T 2xkx_A 59 EYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA 137 (721)
T ss_pred eEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhcc
Confidence 34566676665 4688888742 2 45788999999999 999999999999999887541
Q ss_pred -------------------------CCCccceEEe-----------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEc
Q psy2263 157 -------------------------SAGHVGFQFK-----------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNV 198 (232)
Q Consensus 157 -------------------------~~~~~g~~~~-----------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~ 198 (232)
....+||.+. .|+++. |.++|+|+++| |++||+|++|||+++
T Consensus 138 g~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v 217 (721)
T 2xkx_A 138 GSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 217 (721)
T ss_pred ccccceEEEecccccccceeeeeeeecCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeC
Confidence 0234777764 256666 99999999999 999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 199 VGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.+++|.+++.+++..+..+.|.|.|+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~v~l~V~R~g~ 245 (721)
T 2xkx_A 218 EDVMHEDAVAALKNTYDVVYLKVAKPSN 245 (721)
T ss_pred CCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 9999999999999888899999987654
No 17
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.57 E-value=4.2e-14 Score=98.17 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=79.1
Q ss_pred cccccccceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 8 LEDMKYHQMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
.+++....++.+.+.+.+.++|||.+.... .+++|..|.++|||+++||+.||+|++|||.++.++++.++..+++.
T Consensus 8 ~~~~~~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 87 (104)
T 1wi2_A 8 NNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT 87 (104)
T ss_dssp CCCCCSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred ccCcCCCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence 355666778999999998889999998743 58999999999999999999999999999999999878888888886
Q ss_pred CCCCeEEEEEecCCce
Q psy2263 85 CPVNNISIVVRDRPFE 100 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~ 100 (232)
+..+.|++.|.+.+
T Consensus 88 --~~~v~l~v~r~~~~ 101 (104)
T 1wi2_A 88 --AREISMRVRFFSGP 101 (104)
T ss_dssp --SSSEEEEEECCCCS
T ss_pred --CCEEEEEEEECCCC
Confidence 68899999886543
No 18
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.57 E-value=3.5e-14 Score=97.09 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=75.0
Q ss_pred cceEEEEEEeeCCCccceEEeecC-----CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH-----EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~-----~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
..+|.+.+.+... +|||++.... .+++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +.
T Consensus 2 ~~~r~v~l~k~~~-~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~ 79 (96)
T 2v90_A 2 MKPRCLHLEKGPQ-GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GS 79 (96)
T ss_dssp CCCEEEEEECBTT-BSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TT
T ss_pred CCCEEEEEEeCCC-cccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence 4578999999865 6999998732 379999999999999999999999999999999998778888888864 89
Q ss_pred eEEEEEecCCceee
Q psy2263 89 NISIVVRDRPFERN 102 (232)
Q Consensus 89 ~v~l~v~r~~~~~~ 102 (232)
.+.|++.|++....
T Consensus 80 ~v~l~v~r~~~~~~ 93 (96)
T 2v90_A 80 CVSLTVVDPEADRE 93 (96)
T ss_dssp EEEEEEECCCTTSC
T ss_pred EEEEEEECCCCccc
Confidence 99999999776544
No 19
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.56 E-value=4.2e-14 Score=97.07 Aligned_cols=85 Identities=27% Similarity=0.382 Sum_probs=73.5
Q ss_pred ccceEEEEEEeeCCCccceEEeecC---------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIH---------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL 82 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~---------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l 82 (232)
...++.+.+.+.+..+|||++.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++..++
T Consensus 3 ge~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l 82 (98)
T 1ihj_A 3 GELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLI 82 (98)
T ss_dssp CCEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4557889999977888999997532 379999999999999999 999999999999999999887888888
Q ss_pred hhCCCCeEEEEEecCC
Q psy2263 83 RNCPVNNISIVVRDRP 98 (232)
Q Consensus 83 ~~~~~~~v~l~v~r~~ 98 (232)
+. ++..+.|++.|++
T Consensus 83 ~~-~g~~v~l~v~R~g 97 (98)
T 1ihj_A 83 KE-ADFKIELEIQTFD 97 (98)
T ss_dssp HH-SCSEEEEEEEEC-
T ss_pred hc-CCCeEEEEEEeCC
Confidence 76 6889999998864
No 20
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.56 E-value=7.2e-14 Score=94.38 Aligned_cols=84 Identities=26% Similarity=0.361 Sum_probs=73.4
Q ss_pred cceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
..+|.+.+.+.+. +|||.+.... .+++|..|.++|||+++||++||+|++|||.++.++++.++..+++.. +..+.
T Consensus 3 ~~~r~v~l~k~~~-g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~ 80 (90)
T 2he4_A 3 LRPRLCHLRKGPQ-GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEAR 80 (90)
T ss_dssp TCCEEEEEECBTT-BCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEE
T ss_pred CCcEEEEEEECCC-CccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEE
Confidence 4678899999875 6999998754 589999999999999999999999999999999999887888888865 78999
Q ss_pred EEEecCCc
Q psy2263 92 IVVRDRPF 99 (232)
Q Consensus 92 l~v~r~~~ 99 (232)
|++.|...
T Consensus 81 l~v~r~~~ 88 (90)
T 2he4_A 81 LLVVGPST 88 (90)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99988653
No 21
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.56 E-value=4.5e-14 Score=96.56 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=71.3
Q ss_pred ccceEEEEEEeeCCCccceEEee-cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAA-IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~-~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
.++++.+.+.|.++++||+++.. ...+++|..|.++|||+++| |++||+|++|||.++.+++..++.++++.. +..+
T Consensus 10 ~~~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v 88 (97)
T 2ejy_A 10 GHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMI 88 (97)
T ss_dssp ---CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEE
T ss_pred CCccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeE
Confidence 46789999999999999999986 34789999999999999999 999999999999999986557888888865 5678
Q ss_pred EEEEecC
Q psy2263 91 SIVVRDR 97 (232)
Q Consensus 91 ~l~v~r~ 97 (232)
.|++.+.
T Consensus 89 ~L~V~~~ 95 (97)
T 2ejy_A 89 SLKVIPN 95 (97)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 8888753
No 22
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.56 E-value=2.2e-14 Score=102.19 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=72.5
Q ss_pred cceEEEEEEeeCCCccceEEeec------CCceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI------HEGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~------~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
..++.+.+.|.+.++|||++..+ ..+++|..|.++|||+++ ||++||+|++|||.++.++++.++..+++..
T Consensus 23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~- 101 (120)
T 2iwo_A 23 MGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA- 101 (120)
T ss_dssp --CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-
T ss_pred CCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence 44688899999888899999874 247999999999999998 8999999999999999999988888888865
Q ss_pred CCeEEEEEecCCceeee
Q psy2263 87 VNNISIVVRDRPFERNV 103 (232)
Q Consensus 87 ~~~v~l~v~r~~~~~~v 103 (232)
+..+.|++.|.+...++
T Consensus 102 ~~~v~l~v~r~g~~~~~ 118 (120)
T 2iwo_A 102 SGSIEMQVVAGGDVSET 118 (120)
T ss_dssp CSEEEEEEECCTTSSSC
T ss_pred CCeEEEEEEECCcccee
Confidence 56799999997766544
No 23
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-14 Score=97.29 Aligned_cols=87 Identities=28% Similarity=0.404 Sum_probs=75.4
Q ss_pred cccceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 12 KYHQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 12 ~~~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
....++.+.+.+.+.++||+++... ..+++|..|.++|||+++||++||+|++|||.++.+++..++...++. +.
T Consensus 7 ~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~ 84 (100)
T 2eeh_A 7 GSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SS 84 (100)
T ss_dssp CCCEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CS
T ss_pred CCCeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CC
Confidence 3456788899999899999999875 468999999999999999999999999999999999877677777764 68
Q ss_pred eEEEEEecCCce
Q psy2263 89 NISIVVRDRPFE 100 (232)
Q Consensus 89 ~v~l~v~r~~~~ 100 (232)
.+.|++.|+++.
T Consensus 85 ~v~l~v~R~g~~ 96 (100)
T 2eeh_A 85 RLHMMVRRMGSG 96 (100)
T ss_dssp SEEEEEEECSCC
T ss_pred EEEEEEEECCcC
Confidence 899999987653
No 24
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.56 E-value=8.7e-14 Score=93.75 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=73.0
Q ss_pred cceEEEEEEeeCCCccceEEeec-CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI-HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~-~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v 90 (232)
..++.+.+.|.+ .+||+++..+ ...+||..+.++++|++.| |++||.|++|||+++.++++.+++++|++.+ +.++
T Consensus 4 g~~k~V~l~K~~-~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~ 82 (95)
T 3gge_A 4 GIEKEVNVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELF 82 (95)
T ss_dssp EEEEEEEEECCS-SCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEE
T ss_pred CeEEEEEEEECC-CCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEE
Confidence 467889999976 6799999864 4568999999999999998 9999999999999999999999999999876 6788
Q ss_pred EEEEec
Q psy2263 91 SIVVRD 96 (232)
Q Consensus 91 ~l~v~r 96 (232)
.|.+.+
T Consensus 83 ~L~lv~ 88 (95)
T 3gge_A 83 TMKLIE 88 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888876
No 25
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.55 E-value=9.8e-14 Score=97.77 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=79.6
Q ss_pred cccccccceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 8 LEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
...+....++.+.+.+...++|||.+.....+++|..|.+++||+++|| +.||+|++|||+++.++++.++..+++...
T Consensus 18 ~~~~~~~~~~~v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 97 (113)
T 1va8_A 18 IGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH 97 (113)
T ss_dssp CSEETTEECEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred cccCCCCceEEEEEEeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 3445566789999999988789999988778999999999999999998 999999999999999988888888887654
Q ss_pred CCeEEEEEecCCce
Q psy2263 87 VNNISIVVRDRPFE 100 (232)
Q Consensus 87 ~~~v~l~v~r~~~~ 100 (232)
..+.|++.|.+++
T Consensus 98 -~~v~l~v~r~~~~ 110 (113)
T 1va8_A 98 -GTLTFVLIPSSGP 110 (113)
T ss_dssp -EEEEEEEECCCCC
T ss_pred -CeEEEEEEECCcc
Confidence 6789988886654
No 26
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.55 E-value=1.1e-13 Score=93.69 Aligned_cols=85 Identities=27% Similarity=0.319 Sum_probs=70.6
Q ss_pred cceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
..+|.+.+.+.+. +|||++.... .+++|..|.++|||+++||++||+|++|||.++.++++.++...++...+..+.
T Consensus 2 ~~~r~v~l~r~~~-g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~ 80 (91)
T 1g9o_A 2 MLPRLCCLEKGPN-GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL 80 (91)
T ss_dssp CCCEEEEEECBTT-BCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred CccEEEEEEeCCC-cccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence 4578899999876 5999998754 589999999999999999999999999999999998888888888866555555
Q ss_pred EEEecCCc
Q psy2263 92 IVVRDRPF 99 (232)
Q Consensus 92 l~v~r~~~ 99 (232)
+.+.|++.
T Consensus 81 ~~~~r~~~ 88 (91)
T 1g9o_A 81 LVVDPETD 88 (91)
T ss_dssp EEECCCCS
T ss_pred EEEcCCcc
Confidence 55555443
No 27
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.54 E-value=1.5e-13 Score=95.47 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=72.2
Q ss_pred ceEEEEEEeeCCCccceEEeecC--------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH--------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~--------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
.++.+.+.+.+ .+|||++.... .+++|..|.++|||+++| |+.||+|++|||.++.+.++.++...++..
T Consensus 3 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 81 (105)
T 2awx_A 3 KIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT 81 (105)
T ss_dssp CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC
T ss_pred eEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 46788888887 56999998642 489999999999999999 999999999999999998887788888754
Q ss_pred CCCeEEEEEecCCceeeeEeec
Q psy2263 86 PVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
+..+.|++.|++......+.+
T Consensus 82 -~~~v~l~v~R~~~~~~~~~~p 102 (105)
T 2awx_A 82 -SDFVYLKVAKPTSMYISRHHH 102 (105)
T ss_dssp -CSEEEEEEECCCC--------
T ss_pred -CCeEEEEEEcCCCCCCccccc
Confidence 789999999987766665543
No 28
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.54 E-value=2.3e-13 Score=95.69 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=79.4
Q ss_pred eEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
...+.+.+...++||+.+.... .+++|..|.++|||+++|| +.||+|++|||.++.+++..++..+++..++..+.+
T Consensus 2 ~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l 81 (112)
T 1qau_A 2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 81 (112)
T ss_dssp EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEE
T ss_pred EEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEE
Confidence 3567788888888999998754 4899999999999999997 999999999999999977788888888766889999
Q ss_pred EEecCCceeeeEeec
Q psy2263 93 VVRDRPFERNVTLHK 107 (232)
Q Consensus 93 ~v~r~~~~~~v~l~~ 107 (232)
.+.|++...++.+..
T Consensus 82 ~v~R~g~~~~~~~~~ 96 (112)
T 1qau_A 82 LILRGPEGFTTHLET 96 (112)
T ss_dssp EEEECCTTSEEEEEE
T ss_pred EEEeCCcccceEeee
Confidence 999988877766653
No 29
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.53 E-value=2e-13 Score=92.36 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=66.3
Q ss_pred CCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCcee
Q psy2263 25 IHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFER 101 (232)
Q Consensus 25 ~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~ 101 (232)
..++|||++.... .+++|..|.++|||+++||++||+|++|||.++.++++.++...++. ++..+.+++.|+++..
T Consensus 11 ~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 11 GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHES 89 (91)
T ss_dssp SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence 3467999998643 57899999999999999999999999999999999987778888886 7899999999977654
No 30
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.53 E-value=1.4e-13 Score=94.20 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=71.9
Q ss_pred eEEEEEEeeCCCccceEEeec-------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI-------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~-------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
...+.+.+. ..+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++..+++. ++
T Consensus 4 ~~~v~l~k~-~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g 81 (97)
T 2jil_A 4 TVEVTLHKE-GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CG 81 (97)
T ss_dssp EEEEEEECB-TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SC
T ss_pred EEEEEEEeC-CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CC
Confidence 455667665 56799999875 3589999999999999999 99999999999999999878889888887 78
Q ss_pred CeEEEEEecCCcee
Q psy2263 88 NNISIVVRDRPFER 101 (232)
Q Consensus 88 ~~v~l~v~r~~~~~ 101 (232)
..+.|++.|++...
T Consensus 82 ~~v~l~v~R~~~~~ 95 (97)
T 2jil_A 82 QEAALLIEYDVSET 95 (97)
T ss_dssp SEEEEEEEEECCCC
T ss_pred CeEEEEEEeCCCcC
Confidence 99999999976554
No 31
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.53 E-value=2.2e-13 Score=91.35 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=67.9
Q ss_pred EEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 19 LFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 19 ~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
+++.....++|||.+.... .+++|..|.++|||+++||++||+|++|||.++.++++.++..+++... ..+.+++.
T Consensus 4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~ 82 (87)
T 2pa1_A 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLD 82 (87)
T ss_dssp EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEE
T ss_pred EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEE
Confidence 4555555678999998654 4899999999999999999999999999999999987788999998765 88999998
Q ss_pred cCC
Q psy2263 96 DRP 98 (232)
Q Consensus 96 r~~ 98 (232)
|++
T Consensus 83 R~~ 85 (87)
T 2pa1_A 83 RIT 85 (87)
T ss_dssp ECC
T ss_pred ecC
Confidence 865
No 32
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.52 E-value=6.8e-14 Score=97.80 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=73.5
Q ss_pred ceEEEEEEeeCCCccceEEeec-----CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC--C
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI-----HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC--P 86 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~-----~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~ 86 (232)
.++.+.+.+.+...|||++... ..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.. .
T Consensus 5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~ 84 (108)
T 3cbz_A 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84 (108)
T ss_dssp CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence 4677888887778899999874 4789999999999999999 999999999999999998888999999876 4
Q ss_pred CCeEEEEEecCCc
Q psy2263 87 VNNISIVVRDRPF 99 (232)
Q Consensus 87 ~~~v~l~v~r~~~ 99 (232)
+..+.|++.|...
T Consensus 85 ~~~v~l~v~R~~~ 97 (108)
T 3cbz_A 85 PGPIVLTVAKSGG 97 (108)
T ss_dssp SSCEEEEEECCCC
T ss_pred CCeEEEEEEeCCC
Confidence 4569999988543
No 33
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.52 E-value=5.1e-14 Score=101.71 Aligned_cols=96 Identities=18% Similarity=0.296 Sum_probs=82.3
Q ss_pred CCCCCcccccccceEEEEEEeeCCCccceEEeecC------CceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCH
Q psy2263 3 NIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIH------EGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNM 75 (232)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~------~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~ 75 (232)
.++|+........++.+.+.+.. .+|||++.... .+++|..|.+++||+++ ||+.||+|++|||+++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~ 95 (130)
T 1i16_A 17 ASDVSVESTAEATVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTR 95 (130)
T ss_dssp CSSCCSCCSSSEEEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCH
T ss_pred ccCccccCCCCCcEEEEEEEcCC-CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 36677777777888999998874 56999998743 47999999999999999 899999999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEEecCCc
Q psy2263 76 HQVHALLRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 76 ~~~~~~l~~~~~~~v~l~v~r~~~ 99 (232)
.++..+++...+..+.|++.|+..
T Consensus 96 ~~~~~~l~~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 96 FEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp HHHHHHHHTSCSSEEEEEEEEESS
T ss_pred HHHHHHHHhCCCceEEEEEEeCCC
Confidence 999999997767789999988543
No 34
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=99.42 Aligned_cols=90 Identities=27% Similarity=0.403 Sum_probs=77.8
Q ss_pred ccceEEEEEEeeCCCccceEEeec------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCC-CCCHHHHHHHHhh
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVA-GSNMHQVHALLRN 84 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~-~~~~~~~~~~l~~ 84 (232)
...++.+.+.+.+.++|||++... ..+++|..|.++|||+++| |++||+|++|||.++. ++++.++..+++.
T Consensus 18 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~ 97 (117)
T 2o2t_A 18 GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK 97 (117)
T ss_dssp TSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence 356788999998888899999863 2589999999999999999 9999999999999998 7788888888876
Q ss_pred CCCCeEEEEEecCCceeee
Q psy2263 85 CPVNNISIVVRDRPFERNV 103 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~~~v 103 (232)
.+..+.|++.|++...++
T Consensus 98 -~~~~v~l~v~R~~~~~~~ 115 (117)
T 2o2t_A 98 -AKDTVQLVIARGSLPQYY 115 (117)
T ss_dssp -CCSEEEEEEESSCCGGGG
T ss_pred -CCCEEEEEEEeCCcceee
Confidence 578999999998776554
No 35
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-13 Score=95.23 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=73.6
Q ss_pred ccceEEEEEEeeCCCccceEEee-------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAA-------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~-------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
...++.+.+.+.+ .+|||++.. ...+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++.
T Consensus 13 ~~~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 91 (108)
T 2d92_A 13 SPEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91 (108)
T ss_dssp CSSCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred CCceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 3456889998886 469999976 34679999999999999999 99999999999999999888899999988
Q ss_pred CCCCeEEEEEecCC
Q psy2263 85 CPVNNISIVVRDRP 98 (232)
Q Consensus 85 ~~~~~v~l~v~r~~ 98 (232)
.++..+.|++.|..
T Consensus 92 ~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 92 VPPGLVHLGICSGP 105 (108)
T ss_dssp SCSEEEEEEEECCC
T ss_pred CCCCeEEEEEEcCC
Confidence 66678999998854
No 36
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.51 E-value=3.6e-13 Score=91.27 Aligned_cols=84 Identities=31% Similarity=0.403 Sum_probs=71.8
Q ss_pred cceEEEEEEeeCCCccceEEeec--CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
.....+.+.+.+..+||+++... ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++. .+..+
T Consensus 3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v 81 (92)
T 2qg1_A 3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTV 81 (92)
T ss_dssp -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEE
T ss_pred ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeE
Confidence 34677888888888899999874 3689999999999999999 99999999999999999888777777775 46789
Q ss_pred EEEEecCC
Q psy2263 91 SIVVRDRP 98 (232)
Q Consensus 91 ~l~v~r~~ 98 (232)
.|++.|..
T Consensus 82 ~l~v~R~~ 89 (92)
T 2qg1_A 82 TLEVGRIS 89 (92)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99998854
No 37
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.51 E-value=2.7e-13 Score=93.58 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=73.6
Q ss_pred ccceEEEEEEeeCCCccceEEeecCC-----ceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIHE-----GVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHALLRNC- 85 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~~-----g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~- 85 (232)
...++.+.+.+..+++|||++..... +++|..|.+++||++ ++|++||+|++|||.++.+.++.++.++++..
T Consensus 7 ~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 86 (101)
T 2yt7_A 7 GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETK 86 (101)
T ss_dssp TCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTT
T ss_pred CCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 35678899998888899999976432 599999999999999 56999999999999999877888899999875
Q ss_pred CCCeEEEEEecCC
Q psy2263 86 PVNNISIVVRDRP 98 (232)
Q Consensus 86 ~~~~v~l~v~r~~ 98 (232)
++..+.|++.|.+
T Consensus 87 ~g~~v~l~v~R~~ 99 (101)
T 2yt7_A 87 SQTSVTLSIVHCP 99 (101)
T ss_dssp TSSEEEEEECCCC
T ss_pred CCCeEEEEEEeCC
Confidence 5789999998743
No 38
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.51 E-value=5.8e-13 Score=91.30 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=72.4
Q ss_pred ceEEEEEEeeCCCccceEEeecC----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
..+.+.+.+. ..+||+++.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.. +..
T Consensus 4 ~~~~v~l~~~-~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~ 81 (98)
T 2opg_A 4 CETTIEISKG-RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQR 81 (98)
T ss_dssp EEEEEEEECB-TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSE
T ss_pred CEEEEEEEEC-CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCe
Confidence 4567778777 456999998754 589999999999999999 999999999999999999877788778754 488
Q ss_pred EEEEEecCCceee
Q psy2263 90 ISIVVRDRPFERN 102 (232)
Q Consensus 90 v~l~v~r~~~~~~ 102 (232)
+.+++.|++...+
T Consensus 82 v~l~v~R~~~~~~ 94 (98)
T 2opg_A 82 VRLTLYRDEAPYK 94 (98)
T ss_dssp EEEEEEECSSCCC
T ss_pred EEEEEEcCCCCCc
Confidence 9999998776544
No 39
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.51 E-value=2.9e-13 Score=91.37 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=71.4
Q ss_pred cceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
..++.+.+.+...++|||++... ..+++|..|.++|||+++ ||++||+|++|||.++.++++.++...++.. +..
T Consensus 3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~ 81 (90)
T 1qav_A 3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKE 81 (90)
T ss_dssp SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSE
T ss_pred CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCe
Confidence 35788999998888999999864 357999999999999999 8999999999999999999887888888754 678
Q ss_pred EEEEEec
Q psy2263 90 ISIVVRD 96 (232)
Q Consensus 90 v~l~v~r 96 (232)
+.|++.|
T Consensus 82 v~l~v~r 88 (90)
T 1qav_A 82 VVLEVKY 88 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888876
No 40
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-13 Score=98.08 Aligned_cols=95 Identities=23% Similarity=0.352 Sum_probs=80.1
Q ss_pred CcccccccceEEEEEEeeCCCccceEEee--------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHH
Q psy2263 7 SLEDMKYHQMTKLFLCKDIHGKIGLRVAA--------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQ 77 (232)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~lGi~~~~--------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~ 77 (232)
+..+-.....+.+.+.+....+|||++.. ...+++|..|.++|||+++| |++||+|++|||.++.++++.+
T Consensus 7 ~~~~~~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 86 (129)
T 2dmz_A 7 GGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHD 86 (129)
T ss_dssp CCCSSCCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHH
T ss_pred CCCCCCCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 33444556677788877778889999987 34689999999999999999 9999999999999999988888
Q ss_pred HHHHHhhCCCCeEEEEEecCCceee
Q psy2263 78 VHALLRNCPVNNISIVVRDRPFERN 102 (232)
Q Consensus 78 ~~~~l~~~~~~~v~l~v~r~~~~~~ 102 (232)
+..+++. .+..+.|++.|++...+
T Consensus 87 ~~~~l~~-~~~~v~l~v~R~~~~~~ 110 (129)
T 2dmz_A 87 VVEVLRN-AGQVVHLTLVRRKTSSS 110 (129)
T ss_dssp HHHHHHH-CCSSEEEEEEEESSSSS
T ss_pred HHHHHHc-CCCeEEEEEEeCCcccc
Confidence 9999987 78899999999765443
No 41
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.51 E-value=7.6e-14 Score=94.47 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=70.4
Q ss_pred cceEEEEEEeeCCCccceEEeec--CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
..+|.+.+.+.+. +||+++... ..+++|..|.++|||+++||+.||+|++|||.++.+++..++..+++.. ++.+.
T Consensus 2 ~~pr~v~l~k~~~-~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~ 79 (91)
T 2vsp_A 2 MKPKLCRLAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVT 79 (91)
T ss_dssp CCEEEEEEECBTT-BTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEE
T ss_pred CCcEEEEEEeCCC-cccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEE
Confidence 3578899999876 599999753 3689999999999999999999999999999999977778888888866 88999
Q ss_pred EEEecCCce
Q psy2263 92 IVVRDRPFE 100 (232)
Q Consensus 92 l~v~r~~~~ 100 (232)
|++.|++..
T Consensus 80 l~v~r~~~~ 88 (91)
T 2vsp_A 80 LLVCGKKAQ 88 (91)
T ss_dssp EEEEC----
T ss_pred EEEEeCCcc
Confidence 999886543
No 42
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.51 E-value=3.7e-13 Score=92.82 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=71.9
Q ss_pred cceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
..++.+.+.+.+ .+|||++... ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++...++.
T Consensus 6 ~~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 84 (101)
T 2jik_A 6 VTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN 84 (101)
T ss_dssp EEEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT
T ss_pred CccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 356788888876 7799999873 3689999999999999999 99999999999999999988788888875
Q ss_pred CCCCeEEEEEecCCc
Q psy2263 85 CPVNNISIVVRDRPF 99 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~ 99 (232)
.+..+.|++.|++.
T Consensus 85 -~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 85 -AGYAVSLRVQHRLE 98 (101)
T ss_dssp -CCSEEEEEEEEESC
T ss_pred -CCCeEEEEEEeCCC
Confidence 47889999988554
No 43
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.50 E-value=4e-13 Score=91.81 Aligned_cols=82 Identities=29% Similarity=0.370 Sum_probs=71.1
Q ss_pred cceEEEEEEeeCCCccceEEee-------c---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAA-------I---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~-------~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
..++.+.+.|.+.+.|||++.. . ..+++|..|.++|||+++||++||+|++|||.++.++++.++..+++
T Consensus 3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~ 82 (96)
T 2ego_A 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK 82 (96)
T ss_dssp CCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3568899999988899999985 1 24789999999999999999999999999999999988888988888
Q ss_pred hCCCCeEEEEEec
Q psy2263 84 NCPVNNISIVVRD 96 (232)
Q Consensus 84 ~~~~~~v~l~v~r 96 (232)
.. +..+.|++.+
T Consensus 83 ~~-~~~v~l~v~~ 94 (96)
T 2ego_A 83 AS-GNVLRLETLY 94 (96)
T ss_dssp HT-TTEEEEEEEC
T ss_pred hC-CCeEEEEEEE
Confidence 76 4588888875
No 44
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.50 E-value=3.6e-13 Score=93.07 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=73.8
Q ss_pred cceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
+.++.+.+.+. ..+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.
T Consensus 3 ~~~~~v~l~k~-~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 81 (102)
T 2i1n_A 3 FKYEEIVLERG-NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE 81 (102)
T ss_dssp EEEEEEEEECB-TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred ceEEEEEEEEC-CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 45678888886 46699999863 3589999999999999999 99999999999999999888788888876
Q ss_pred CCCCeEEEEEecCCceee
Q psy2263 85 CPVNNISIVVRDRPFERN 102 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~~~ 102 (232)
.+..+.|++.|++...+
T Consensus 82 -~g~~v~l~v~R~~~~~~ 98 (102)
T 2i1n_A 82 -AGPVVRLVVRRRQPPPE 98 (102)
T ss_dssp -SCSEEEEEEEEECCCCS
T ss_pred -CCCeEEEEEEeCCCCCC
Confidence 57899999998765543
No 45
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=2.8e-13 Score=95.95 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=73.0
Q ss_pred ccceEEEEEEeeCCCccceEEeec------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
...++.+.+.+.+ .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++...++..
T Consensus 23 ~~~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 101 (117)
T 2fne_A 23 MPQCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101 (117)
T ss_dssp CCEEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3457888998887 5699999864 3579999999999999999 999999999999999988888888888865
Q ss_pred CCCeEEEEEecCCce
Q psy2263 86 PVNNISIVVRDRPFE 100 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~ 100 (232)
+..+.|++.|++++
T Consensus 102 -~~~v~l~v~R~g~~ 115 (117)
T 2fne_A 102 -KGTVTLMVLSSDET 115 (117)
T ss_dssp -CSSEEEEEEECSCE
T ss_pred -CCeEEEEEEeCCcc
Confidence 45699999987654
No 46
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=3.8e-13 Score=93.10 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=70.1
Q ss_pred ceEEEEEEeeCCCccceEEeecC------------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH------------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~------------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
.++.+.+.+.++++||+++.... .+++|..|.++|||+++| |++||+|++|||.++.+++..++..+
T Consensus 4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~ 83 (103)
T 2fcf_A 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA 83 (103)
T ss_dssp SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35778888888899999997632 479999999999999999 99999999999999999878889998
Q ss_pred HhhCCCCeEEEEEecCCc
Q psy2263 82 LRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 82 l~~~~~~~v~l~v~r~~~ 99 (232)
++.. +..+.|++.|...
T Consensus 84 l~~~-~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 84 IRKA-GNPVVFMVQSIIS 100 (103)
T ss_dssp HHTC-CSSEEEEEECCCC
T ss_pred HHhC-CCcEEEEEEECCC
Confidence 9865 4589999988544
No 47
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.4e-14 Score=94.27 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=71.8
Q ss_pred ccceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
...+|.+.+.|.+.++||+++.....+++|..|.++|||+++| |++||+|++|||.++ +.+..++..+++.. +..+.
T Consensus 4 ~~~~r~v~l~k~~~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~ 81 (91)
T 2e7k_A 4 GSSGRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVI 81 (91)
T ss_dssp CCCSCBCCBCCCTTCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBC
T ss_pred CCCcEEEEEEECCCCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEE
Confidence 3456778888888899999999877899999999999999987 999999999999999 66778888888864 67788
Q ss_pred EEEecC
Q psy2263 92 IVVRDR 97 (232)
Q Consensus 92 l~v~r~ 97 (232)
|++.|.
T Consensus 82 l~v~~~ 87 (91)
T 2e7k_A 82 LKILSG 87 (91)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 888764
No 48
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.50 E-value=4.6e-13 Score=90.96 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=71.2
Q ss_pred cceEEEEEEeeCCCccceEEeec--CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
+.+|.+.+.+.. .+|||++... ..+++|..|.++|||+++| |+.||+|++|||.++.+.++.++..+++... ..+
T Consensus 3 ~~~r~v~l~k~~-~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v 80 (93)
T 3o46_A 3 DSVKIIRLVKNR-EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAI 80 (93)
T ss_dssp -CCEEEEEEESS-SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC-EEE
T ss_pred ccEEEEEEEeCC-CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeE
Confidence 457889998874 5799999876 5789999999999999999 9999999999999998888888999998765 488
Q ss_pred EEEEecCC
Q psy2263 91 SIVVRDRP 98 (232)
Q Consensus 91 ~l~v~r~~ 98 (232)
.|++.+..
T Consensus 81 ~l~v~~~~ 88 (93)
T 3o46_A 81 TFKIIPGS 88 (93)
T ss_dssp EEEEECC-
T ss_pred EEEEEeCC
Confidence 88888743
No 49
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.49 E-value=6.6e-13 Score=90.83 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=67.5
Q ss_pred EEEEEeeCCCccceEEee---------cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 18 KLFLCKDIHGKIGLRVAA---------IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~---------~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
.+.+.+. .++|||++.. ...+++|..|.++|||+++||++||+|++|||.++.++++......++. ++.
T Consensus 6 ~v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~ 83 (97)
T 2w4f_A 6 TLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGT 83 (97)
T ss_dssp EEEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCS
T ss_pred EEEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCC
Confidence 3455555 7889999985 3478999999999999999999999999999999999987555555554 689
Q ss_pred eEEEEEecCCce
Q psy2263 89 NISIVVRDRPFE 100 (232)
Q Consensus 89 ~v~l~v~r~~~~ 100 (232)
.+.+++.|++++
T Consensus 84 ~v~l~v~R~g~~ 95 (97)
T 2w4f_A 84 AVQMRVWRERET 95 (97)
T ss_dssp EEEEEEECCSSC
T ss_pred eEEEEEEeCCcc
Confidence 999999997754
No 50
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.49 E-value=3.5e-13 Score=95.55 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=72.4
Q ss_pred cceEEEEEEeeCCCccceEEeecC------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
...+.+.+.+.+.++|||++.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..
T Consensus 23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~- 101 (118)
T 3b76_A 23 MHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT- 101 (118)
T ss_dssp EEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC-
T ss_pred CCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence 445778888888889999998742 579999999999999999 999999999999999999988899999864
Q ss_pred CCeEEEEEecC
Q psy2263 87 VNNISIVVRDR 97 (232)
Q Consensus 87 ~~~v~l~v~r~ 97 (232)
+..+.|++.|.
T Consensus 102 ~~~v~L~v~R~ 112 (118)
T 3b76_A 102 SSSIVLKALEV 112 (118)
T ss_dssp CSEEEEEEEEE
T ss_pred CCeEEEEEEEC
Confidence 67899988873
No 51
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.49 E-value=2.6e-13 Score=96.44 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=77.0
Q ss_pred cceEEEEEEeeCCCccceEEeecC----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
...+.+.+.+....+|||.+.... .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++...+.
T Consensus 14 ~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~ 93 (119)
T 1x6d_A 14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP 93 (119)
T ss_dssp TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred CCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 445667788888889999998743 579999999999999999 999999999999999998888888888877667
Q ss_pred eEEEEEecCCceeeeE
Q psy2263 89 NISIVVRDRPFERNVT 104 (232)
Q Consensus 89 ~v~l~v~r~~~~~~v~ 104 (232)
.+.+++.|++...++.
T Consensus 94 ~~~l~v~R~~~~~~~~ 109 (119)
T 1x6d_A 94 RQAVIVTRKLTPEAMP 109 (119)
T ss_dssp SEEEEEEECCCSSSCC
T ss_pred eEEEEEEcCCCccchh
Confidence 7778888877766553
No 52
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.49 E-value=7.5e-13 Score=90.37 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=71.9
Q ss_pred ccceEEEEEEeeCCCccceEEeec------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
....+.+.+.+.. .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.
T Consensus 3 ~g~~~~v~l~k~~-~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~- 80 (96)
T 1d5g_A 3 PGDIFEVELAKND-NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN- 80 (96)
T ss_dssp TTCEEEEEEECSS-SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-
T ss_pred CCCEEEEEEEeCC-CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence 3456778888764 6799999863 2589999999999999999 99999999999999999988788888875
Q ss_pred CCCeEEEEEecCCc
Q psy2263 86 PVNNISIVVRDRPF 99 (232)
Q Consensus 86 ~~~~v~l~v~r~~~ 99 (232)
.+..+.|++.|++.
T Consensus 81 ~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 81 TGQVVHLLLEKGQS 94 (96)
T ss_dssp CCSEEEEEEECCSC
T ss_pred CCCeEEEEEEcCCC
Confidence 57889999988653
No 53
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=92.43 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=62.4
Q ss_pred CCccceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 158 AGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 158 ~~~~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
...+||.+..|+++. |.++|||+++| |++||+|++|||.++.+.+++++.++++..++.+.|++.+...++
T Consensus 12 ~~~~G~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~~~ 84 (88)
T 3e17_A 12 NEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEHH 84 (88)
T ss_dssp BCCCCEEEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC----
T ss_pred CCCCCEEEeCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCccc
Confidence 457889888888777 99999999999 999999999999999999999999999999999999998877654
No 54
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=4.1e-13 Score=95.16 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=73.8
Q ss_pred CCcccccccceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHH
Q psy2263 6 PSLEDMKYHQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH 76 (232)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~ 76 (232)
|+-.-+....++.+.+.+.. .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+++..
T Consensus 15 p~s~y~~~~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~ 93 (117)
T 2byg_A 15 TENLYFQSMTVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHE 93 (117)
T ss_dssp -----CEEEEEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred CcccccCCCceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 33344455567888888876 7799999863 3579999999999999999 999999999999999998888
Q ss_pred HHHHHHhhCCCCeEEEEEecCC
Q psy2263 77 QVHALLRNCPVNNISIVVRDRP 98 (232)
Q Consensus 77 ~~~~~l~~~~~~~v~l~v~r~~ 98 (232)
++...++.. +..+.|++.|++
T Consensus 94 ~~~~~l~~~-g~~v~l~v~R~~ 114 (117)
T 2byg_A 94 EAVAILKNT-SEVVYLKVGKPT 114 (117)
T ss_dssp HHHHHHHTC-CSEEEEEEEEEE
T ss_pred HHHHHHHcC-CCeEEEEEEeCC
Confidence 888888854 788999998854
No 55
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-13 Score=92.00 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=73.7
Q ss_pred cccccceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 10 DMKYHQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
.+.....+.+.+.+.. .++|+.+.... .+++|..|.++|||+++||++||+|++|||+++.+++..++..+++..++
T Consensus 4 p~~~~~~~~~~l~~~~-~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 82 (98)
T 2jxo_A 4 PFTMLRPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (98)
T ss_dssp SSCSSCCEEEEEECTT-TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred CCccCCcEEEEEEeCC-CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3444567888888875 46999998644 58999999999999999999999999999999999777888888987766
Q ss_pred CeEEEEEecCCc
Q psy2263 88 NNISIVVRDRPF 99 (232)
Q Consensus 88 ~~v~l~v~r~~~ 99 (232)
..+.+++.|+++
T Consensus 83 ~~~~l~v~R~g~ 94 (98)
T 2jxo_A 83 ETKLLVVDRETD 94 (98)
T ss_dssp EEEEEECCHHHH
T ss_pred cEEEEEEECCch
Confidence 677788887543
No 56
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.49 E-value=3.6e-13 Score=91.78 Aligned_cols=83 Identities=28% Similarity=0.412 Sum_probs=68.7
Q ss_pred cceEEEEEEeeCCCccceEEeecCC--ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHE--GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~--g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
..+|.+.+.+.. .+|||.+..... +++|..|.++|||+++||+.||+|++|||.++.++++.++..+++. .+..+.
T Consensus 4 ~~~r~v~l~~~~-~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~ 81 (95)
T 3r68_A 4 HQPRVVVIKKGS-NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTT 81 (95)
T ss_dssp CCCEEEEEECBT-TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEE
T ss_pred CCcEEEEEecCC-CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEE
Confidence 457888898864 569999987554 8999999999999999999999999999999999988888888886 456666
Q ss_pred EEEecCC
Q psy2263 92 IVVRDRP 98 (232)
Q Consensus 92 l~v~r~~ 98 (232)
+.+.|..
T Consensus 82 ~~~~r~~ 88 (95)
T 3r68_A 82 LLVLDKE 88 (95)
T ss_dssp EEEEECC
T ss_pred EEEECCc
Confidence 6665543
No 57
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.49 E-value=6.3e-13 Score=92.96 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=70.4
Q ss_pred ceEEEEEEeeCCCccceEEeecCC---------------ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHH
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIHE---------------GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVH 79 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~~---------------g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~ 79 (232)
..+.+.+.+...++|||++..... |++|..|.++|||+++||+.||+|++|||.++.++++.++.
T Consensus 7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~ 86 (109)
T 1q3o_A 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV 86 (109)
T ss_dssp EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 457788888778889999987543 78999999999999999999999999999999999888888
Q ss_pred HHHhhCCCCeEEEEEec
Q psy2263 80 ALLRNCPVNNISIVVRD 96 (232)
Q Consensus 80 ~~l~~~~~~~v~l~v~r 96 (232)
.+++.. +..+.|++.|
T Consensus 87 ~~l~~~-~~~v~l~v~~ 102 (109)
T 1q3o_A 87 NMIRQG-GNTLMVKVVM 102 (109)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhC-CCEEEEEEEE
Confidence 888764 6788888876
No 58
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.49 E-value=7.6e-13 Score=90.19 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=71.2
Q ss_pred ceEEEEEEee-CCCccceEEeec--CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKD-IHGKIGLRVAAI--HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~-~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
....+.+.+. ++.+||+++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++. .+..+
T Consensus 3 ~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v 81 (95)
T 2vwr_A 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA-SGERV 81 (95)
T ss_dssp EEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEE
T ss_pred EEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEE
Confidence 3567788875 667899999764 4689999999999999999 99999999999999999888777777775 47899
Q ss_pred EEEEecCCc
Q psy2263 91 SIVVRDRPF 99 (232)
Q Consensus 91 ~l~v~r~~~ 99 (232)
.+.+.|++.
T Consensus 82 ~l~v~R~~~ 90 (95)
T 2vwr_A 82 NLTIARPGK 90 (95)
T ss_dssp EEEEEEESC
T ss_pred EEEEEcCCc
Confidence 999988654
No 59
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.49 E-value=3e-13 Score=94.14 Aligned_cols=84 Identities=29% Similarity=0.388 Sum_probs=73.2
Q ss_pred eEEEEEEeeCCCccceEEeec--CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
+|.+.+.+.++..+||.+... ..+++|..|.++|||+++||+.||+|++|||.++.++++.++...++. .+..+.|+
T Consensus 2 ~r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~ 80 (106)
T 3ngh_A 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLL 80 (106)
T ss_dssp CEEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEE
T ss_pred CEEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEE
Confidence 678899999888899988764 358999999999999999999999999999999999987788888874 57899999
Q ss_pred EecCCce
Q psy2263 94 VRDRPFE 100 (232)
Q Consensus 94 v~r~~~~ 100 (232)
+.|.+..
T Consensus 81 v~r~~~~ 87 (106)
T 3ngh_A 81 VLDGDSY 87 (106)
T ss_dssp EECHHHH
T ss_pred EEECCee
Confidence 9986543
No 60
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.49 E-value=4e-13 Score=97.23 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=73.3
Q ss_pred cceEEEEEEeeCCCccceEEeecCC---------------ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHH
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHE---------------GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQV 78 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~---------------g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~ 78 (232)
...+.+.+.|...++|||++..... |++|..|.++|||+++||+.||+|++|||.++.++++.++
T Consensus 26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~ 105 (132)
T 3l4f_D 26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV 105 (132)
T ss_dssp CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHH
T ss_pred CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 4567889999777889999988543 6899999999999999999999999999999999998888
Q ss_pred HHHHhhCCCCeEEEEEecCC
Q psy2263 79 HALLRNCPVNNISIVVRDRP 98 (232)
Q Consensus 79 ~~~l~~~~~~~v~l~v~r~~ 98 (232)
...++. .+..+.|++.+..
T Consensus 106 ~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 106 VNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp HHHHHH-TTTEEEEEEECCC
T ss_pred HHHHHc-CCCEEEEEEEECC
Confidence 888886 5688999888744
No 61
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=3.4e-13 Score=95.58 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=71.8
Q ss_pred eEEEEEEeeC------CCccceEEeecC--------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHH
Q psy2263 16 MTKLFLCKDI------HGKIGLRVAAIH--------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHA 80 (232)
Q Consensus 16 ~~~~~l~~~~------~~~lGi~~~~~~--------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~ 80 (232)
.+.+.+.+.+ ..+|||++.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++..
T Consensus 13 ~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~ 92 (117)
T 1ujd_A 13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS 92 (117)
T ss_dssp EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred eEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence 5677787766 578999997643 279999999999999999 9999999999999999998888888
Q ss_pred HHhhCCCCeEEEEEecCCce
Q psy2263 81 LLRNCPVNNISIVVRDRPFE 100 (232)
Q Consensus 81 ~l~~~~~~~v~l~v~r~~~~ 100 (232)
+++. .+..+.|++.|++..
T Consensus 93 ~l~~-~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 93 IISQ-QSGEAEICVRLDLNM 111 (117)
T ss_dssp HHSC-CSSCEEEEEESSCCC
T ss_pred HHhc-CCCEEEEEEEECCcc
Confidence 8875 578899999987654
No 62
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.48 E-value=7.4e-13 Score=92.26 Aligned_cols=85 Identities=28% Similarity=0.321 Sum_probs=71.6
Q ss_pred cceEEEEEEeeCCCccceEEeec---------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHH
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQV 78 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~ 78 (232)
..++.+.+.+... +|||++... ..+++|..|.++|||+++||+.||+|++|||.++.++++.++
T Consensus 5 ~~~r~v~l~k~~~-g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 83 (107)
T 3qe1_A 5 GSPRVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQV 83 (107)
T ss_dssp -CCEEEEEECBTT-BTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCcEEEEEEECCC-CCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 3578889999866 599999775 234579999999999999999999999999999998888888
Q ss_pred HHHHhhCCCCeEEEEEecCCce
Q psy2263 79 HALLRNCPVNNISIVVRDRPFE 100 (232)
Q Consensus 79 ~~~l~~~~~~~v~l~v~r~~~~ 100 (232)
...++. .+..+.|++.|...+
T Consensus 84 ~~~l~~-~g~~v~l~v~r~~~~ 104 (107)
T 3qe1_A 84 VDLIRA-GEKELILTVLSVESE 104 (107)
T ss_dssp HHHHHH-CSSEEEEEEECSSCC
T ss_pred HHHHHc-CCCEEEEEEEcCCCC
Confidence 888885 478999999885543
No 63
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.48 E-value=7.6e-13 Score=90.55 Aligned_cols=84 Identities=17% Similarity=0.391 Sum_probs=70.6
Q ss_pred ceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
..+.+.+.+. .++||+++.... .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++ ..+..+
T Consensus 5 ~~~~v~l~~~-~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v 82 (97)
T 1n7e_A 5 IIYTVELKRY-GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETV 82 (97)
T ss_dssp CEEEEEEECT-TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEE
T ss_pred eEEEEEEEeC-CCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeE
Confidence 3456666554 566999998754 689999999999999999 9999999999999999988878888887 467899
Q ss_pred EEEEecCCce
Q psy2263 91 SIVVRDRPFE 100 (232)
Q Consensus 91 ~l~v~r~~~~ 100 (232)
.|++.|++..
T Consensus 83 ~l~v~R~~~~ 92 (97)
T 1n7e_A 83 TLKIKKQTDA 92 (97)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999886654
No 64
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.48 E-value=6.3e-13 Score=89.46 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=66.4
Q ss_pred EEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
..+.+.....++|||++... ..+++|..|.++|||+++||++||+|++|||+++.++++.++...++.. +..+.++
T Consensus 3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~ 81 (89)
T 2q3g_A 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLG 81 (89)
T ss_dssp EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEE
T ss_pred cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEE
Confidence 33444333457799999763 3578999999999999999999999999999999998887788777754 7889999
Q ss_pred EecCCc
Q psy2263 94 VRDRPF 99 (232)
Q Consensus 94 v~r~~~ 99 (232)
+.|++.
T Consensus 82 v~R~~~ 87 (89)
T 2q3g_A 82 LSRAIT 87 (89)
T ss_dssp EEEECC
T ss_pred EEeCCC
Confidence 988654
No 65
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.48 E-value=1.1e-12 Score=88.65 Aligned_cols=83 Identities=28% Similarity=0.380 Sum_probs=69.3
Q ss_pred cceEEEEEEeeCC-CccceEEeec--CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 14 HQMTKLFLCKDIH-GKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~-~~lGi~~~~~--~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
...+.+.+.+.+. ..|||.+... ..+++|..|.++|||+++||+.||+|++|||.++.++++.+....++. .+..+
T Consensus 5 ~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v 83 (91)
T 1m5z_A 5 VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKL 83 (91)
T ss_dssp CEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEE
T ss_pred cceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEE
Confidence 3457778888655 5799999864 368999999999999999999999999999999999987666666764 47889
Q ss_pred EEEEecC
Q psy2263 91 SIVVRDR 97 (232)
Q Consensus 91 ~l~v~r~ 97 (232)
.+++.|+
T Consensus 84 ~l~v~R~ 90 (91)
T 1m5z_A 84 DLVISRN 90 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9988875
No 66
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=2.3e-13 Score=96.76 Aligned_cols=95 Identities=23% Similarity=0.344 Sum_probs=78.9
Q ss_pred CcccccccceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhc--CCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 7 SLEDMKYHQMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALV--GLRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~a--gL~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
..........+.+.+.+...++|||++.... .+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+
T Consensus 7 ~~~~~~~~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~ 86 (119)
T 2cs5_A 7 GNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLF 86 (119)
T ss_dssp CCCCCCSSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHH
T ss_pred cCCCcCCCCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3345556678899999988889999998743 36999999999999999 999999999999999999988888888
Q ss_pred HhhCCC---CeEEEEEecCCcee
Q psy2263 82 LRNCPV---NNISIVVRDRPFER 101 (232)
Q Consensus 82 l~~~~~---~~v~l~v~r~~~~~ 101 (232)
++...+ ..+.|++.|+....
T Consensus 87 ~~~~~~~~~~~v~l~v~R~~~~~ 109 (119)
T 2cs5_A 87 IKASCERHSGELMLLVRPNAVYD 109 (119)
T ss_dssp HHHHHHCCSSCEEEEEECCCCCC
T ss_pred HHhccccCCCEEEEEEEcccccC
Confidence 876432 58999999875543
No 67
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.47 E-value=6.3e-13 Score=92.62 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=71.7
Q ss_pred cceEEEEEEeeCCCccceEEeecC---------CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH---------EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~---------~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
...+.+.+.+.++.+|||++.... .+++|..|.++|||+ +||++||+|++|||.++.++++......+.
T Consensus 6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~- 83 (107)
T 2h2b_A 6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR- 83 (107)
T ss_dssp EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-
T ss_pred ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-
Confidence 456888999998889999998632 489999999999999 999999999999999999998755555454
Q ss_pred CCCCeEEEEEecCCcee
Q psy2263 85 CPVNNISIVVRDRPFER 101 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~~ 101 (232)
.++..+.+++.|++...
T Consensus 84 ~~g~~v~l~v~R~~~~~ 100 (107)
T 2h2b_A 84 KSGKNAKITIRRKKGGG 100 (107)
T ss_dssp TCCSEEEEEEEEESCCC
T ss_pred CCCCEEEEEEEECCCCC
Confidence 45789999998866543
No 68
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.47 E-value=4.5e-13 Score=97.78 Aligned_cols=93 Identities=24% Similarity=0.413 Sum_probs=71.5
Q ss_pred ceEEEEEEe---eCCCccceEEeec---------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHH
Q psy2263 15 QMTKLFLCK---DIHGKIGLRVAAI---------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMH 76 (232)
Q Consensus 15 ~~~~~~l~~---~~~~~lGi~~~~~---------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~ 76 (232)
.++.+.+.+ ..+++|||.+..+ ..+++|..|.++|||+++||++||+|++|||.++.+++..
T Consensus 23 ~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~ 102 (139)
T 2vz5_A 23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHD 102 (139)
T ss_dssp EEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred ceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHH
Confidence 345556544 4556899998642 3689999999999999999999999999999999988778
Q ss_pred HHHHHHhhCCCCeEEEEEecCCceeeeEeec
Q psy2263 77 QVHALLRNCPVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 77 ~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
++..+++..+++.+.|++.|++...++.+..
T Consensus 103 ~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~ 133 (139)
T 2vz5_A 103 QARKRLTKRSEEVVRLLVTRQSLQKAVQQSM 133 (139)
T ss_dssp HHHHHHCCTTCSEEEEEEEECC-------CC
T ss_pred HHHHHHHhCCCCEEEEEEEECCEEEEEEEee
Confidence 8888888756889999999988777665543
No 69
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-13 Score=93.06 Aligned_cols=93 Identities=28% Similarity=0.409 Sum_probs=77.4
Q ss_pred CCcccccccceEEEEEEeeCCCccceEEeecC-CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 6 PSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIH-EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~-~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
..+++.....++.+.+.+.. .+|||.+.... .+++|..|.+++||+++| |+.||+|++|||+++.++++.++..+++
T Consensus 6 s~~~~~~~~~~~~v~l~~~~-~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~ 84 (111)
T 2dlu_A 6 SGPETVCWGHVEEVELINDG-SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84 (111)
T ss_dssp CCCCCCSCSEEEEEEEECCS-SCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHH
T ss_pred cCCCCcCcCceEEEEEEeCC-CccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 33455556677888888864 56999998754 789999999999999999 9999999999999999988878888887
Q ss_pred hCCCCeEEEEEecCCce
Q psy2263 84 NCPVNNISIVVRDRPFE 100 (232)
Q Consensus 84 ~~~~~~v~l~v~r~~~~ 100 (232)
. .+..+.|++.|++..
T Consensus 85 ~-~g~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 85 N-CGNSVRMLVARDPAG 100 (111)
T ss_dssp H-HCSEEEEEEEESCTT
T ss_pred h-CCCeEEEEEEeCCCC
Confidence 5 368899999886654
No 70
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.47 E-value=1.1e-12 Score=89.13 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=69.6
Q ss_pred cceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
..++++.+.+.+ .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.
T Consensus 2 ~~~~~v~l~k~~-~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 80 (94)
T 2fe5_A 2 MTIMEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN 80 (94)
T ss_dssp CCEEEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred cEEEEEEEEECC-CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 356788888885 4599999853 2489999999999999999 99999999999999999888777877775
Q ss_pred CCCCeEEEEEecCC
Q psy2263 85 CPVNNISIVVRDRP 98 (232)
Q Consensus 85 ~~~~~v~l~v~r~~ 98 (232)
. +..+.|++.|++
T Consensus 81 ~-~~~v~l~v~R~g 93 (94)
T 2fe5_A 81 T-SDMVYLKVAKPG 93 (94)
T ss_dssp C-CSEEEEEEECCC
T ss_pred C-CCeEEEEEEcCC
Confidence 4 468899888754
No 71
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.47 E-value=4.2e-13 Score=93.03 Aligned_cols=85 Identities=27% Similarity=0.518 Sum_probs=71.9
Q ss_pred ccceEEEEEEeeCCCccceEEeecCC--ceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIHE--GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~~--g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
...++.+.+.+.. .+|||.+..... +++|..|.++|||+++| |+.||+|++|||.++.++++.++...++. .+..
T Consensus 9 ~~~~~~v~l~k~~-~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~ 86 (104)
T 3i4w_A 9 PREPRRIVIHRGS-TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQT 86 (104)
T ss_dssp CSSCEEEEEECBT-TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSE
T ss_pred CCccEEEEEEeCC-CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence 3467889998874 469999987543 89999999999999999 99999999999999999988777777775 5788
Q ss_pred EEEEEecCCc
Q psy2263 90 ISIVVRDRPF 99 (232)
Q Consensus 90 v~l~v~r~~~ 99 (232)
+.+++.|+++
T Consensus 87 v~l~v~r~~~ 96 (104)
T 3i4w_A 87 VTIIAQYKPE 96 (104)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEEECcc
Confidence 9999988643
No 72
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=1e-12 Score=88.84 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=68.9
Q ss_pred ceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.+|.+.+.+... ++||.+.. ..+++|..|.++|||+++||+.||+|++|||.++.++++.++...++. .+..+.+++
T Consensus 3 ~~r~v~l~~~~~-g~G~~l~~-~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v 79 (91)
T 2f5y_A 3 RYRQITIPRGKD-GFGFTICC-DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLV 79 (91)
T ss_dssp EEEEEEEECBTT-BTSEEEEC-SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEE
T ss_pred ceEEEEEEeCCC-CccEEEec-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 467888888764 59999976 357999999999999999999999999999999999988788888875 456789999
Q ss_pred ecCCc
Q psy2263 95 RDRPF 99 (232)
Q Consensus 95 ~r~~~ 99 (232)
.|...
T Consensus 80 ~R~~~ 84 (91)
T 2f5y_A 80 WRMVP 84 (91)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 88554
No 73
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=1.6e-12 Score=92.89 Aligned_cols=87 Identities=23% Similarity=0.229 Sum_probs=73.1
Q ss_pred ccccceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 11 MKYHQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
......+.+.+.+. ..+|||++... ..+++|..|.+++||+++| |+.||+|++|||+++.++++.++..+++..+
T Consensus 15 ~~~~~~~~v~l~~~-~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (123)
T 1ueq_A 15 QLKGTFLSTTLKKS-NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP 93 (123)
T ss_dssp TCCSEEEEEEEECC-TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred cCCCcEEEEEEEeC-CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 33445566777776 45699999863 3569999999999999999 9999999999999999988888999998764
Q ss_pred -CCeEEEEEecCC
Q psy2263 87 -VNNISIVVRDRP 98 (232)
Q Consensus 87 -~~~v~l~v~r~~ 98 (232)
+..+.|++.|+.
T Consensus 94 ~g~~v~l~v~R~~ 106 (123)
T 1ueq_A 94 IGQSVNLVLCRGY 106 (123)
T ss_dssp TTCEEEEEEEESC
T ss_pred CCCeEEEEEEeCC
Confidence 789999999865
No 74
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=4.4e-13 Score=93.92 Aligned_cols=92 Identities=25% Similarity=0.403 Sum_probs=76.9
Q ss_pred cceEEEEEEeeCCCccceEEeec------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
...+.+.+.+.+ .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++. .
T Consensus 7 ~~~~~v~l~~~~-~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~ 84 (110)
T 1um1_A 7 GYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-G 84 (110)
T ss_dssp CCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-C
T ss_pred CcEEEEEEEECC-CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C
Confidence 456777888876 4699999873 3689999999999999999 99999999999999998888788888875 4
Q ss_pred CCeEEEEEecCCceeeeEeec
Q psy2263 87 VNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 87 ~~~v~l~v~r~~~~~~v~l~~ 107 (232)
+..+.|++.|++...++.+.+
T Consensus 85 ~~~v~l~v~R~~~~~~~~v~~ 105 (110)
T 1um1_A 85 GKKMRFLVAKSDVETAKKIHS 105 (110)
T ss_dssp CSEEEEEEECCCHHHHHHHSS
T ss_pred CCeEEEEEEeCCcceeEEEEe
Confidence 789999999988766665544
No 75
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.46 E-value=7.9e-13 Score=88.58 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=69.3
Q ss_pred ceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
.++.+.+.+.+...|||++... ..+++|..|.++|||++ +||++||+|++|||.++.++++.++...++. .+..+
T Consensus 2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v 80 (87)
T 4e34_A 2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEI 80 (87)
T ss_dssp CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEE
T ss_pred CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeE
Confidence 4678899998888899999863 24689999999999999 6999999999999999999988888888875 45678
Q ss_pred EEEEec
Q psy2263 91 SIVVRD 96 (232)
Q Consensus 91 ~l~v~r 96 (232)
.|++.+
T Consensus 81 ~l~v~~ 86 (87)
T 4e34_A 81 EFEVVY 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877753
No 76
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.46 E-value=7e-13 Score=92.54 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=71.5
Q ss_pred ceEEEEEE-eeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 15 QMTKLFLC-KDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 15 ~~~~~~l~-~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
....+.+. +....+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++..+++.
T Consensus 12 ~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 91 (108)
T 2jre_A 12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN 91 (108)
T ss_dssp EEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH
T ss_pred EEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 44556676 46778899999763 3589999999999999999 99999999999999999888788888876
Q ss_pred CCCCeEEEEEecCCce
Q psy2263 85 CPVNNISIVVRDRPFE 100 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~ 100 (232)
.+..+.|++.|++..
T Consensus 92 -~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 92 -AGNPVRLLLIRRLPL 106 (108)
T ss_dssp -HCSEEEEEEEECCCC
T ss_pred -CCCeEEEEEEeCCcC
Confidence 578999999886654
No 77
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.46 E-value=1.3e-12 Score=87.13 Aligned_cols=78 Identities=26% Similarity=0.301 Sum_probs=65.4
Q ss_pred EEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEE
Q psy2263 18 KLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISI 92 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l 92 (232)
.+.+.+.+ .+||+.+.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+ ++.+.+
T Consensus 3 ~v~l~k~~-~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l 81 (85)
T 2i04_A 3 HTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL 81 (85)
T ss_dssp EEEEECBT-TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred EEEEEECC-CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence 45666665 45999998743 459999999999999999 9999999999999999988888888888754 788888
Q ss_pred EEec
Q psy2263 93 VVRD 96 (232)
Q Consensus 93 ~v~r 96 (232)
++.|
T Consensus 82 ~v~R 85 (85)
T 2i04_A 82 ELCR 85 (85)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8865
No 78
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.46 E-value=1.1e-12 Score=91.76 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=72.3
Q ss_pred ccceEEEEEEeeCCCccceEEeec-----CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI-----HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~-----~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
...++.+.+.+. .+|||++... ..+++|..|.+++||+++| |+.||+|++|||+++.++++.++..+++...
T Consensus 13 ~~~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~ 90 (109)
T 1wi4_A 13 DPAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90 (109)
T ss_dssp CTTEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred CCcEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence 345788888775 6799999863 2479999999999999999 9999999999999999999889999998877
Q ss_pred ---CCeEEEEEecCC
Q psy2263 87 ---VNNISIVVRDRP 98 (232)
Q Consensus 87 ---~~~v~l~v~r~~ 98 (232)
+..+.+.+.|++
T Consensus 91 ~r~~~~~~l~v~R~~ 105 (109)
T 1wi4_A 91 LRSESPWEIAFIRSG 105 (109)
T ss_dssp CSSSSCEEEEEECCC
T ss_pred cCCCceEEEEEEeCC
Confidence 788888888754
No 79
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.46 E-value=7.8e-13 Score=91.65 Aligned_cols=80 Identities=26% Similarity=0.460 Sum_probs=66.2
Q ss_pred EEEEEEe---eCCCccceEEee---------------cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHH
Q psy2263 17 TKLFLCK---DIHGKIGLRVAA---------------IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQV 78 (232)
Q Consensus 17 ~~~~l~~---~~~~~lGi~~~~---------------~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~ 78 (232)
..+.+.+ .++.+|||++.+ ...|++|..|.++|||+++||++||+|++|||.++.++++.++
T Consensus 6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 85 (104)
T 3sfj_A 6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 85 (104)
T ss_dssp EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 4455544 344479999982 2467999999999999999999999999999999999887788
Q ss_pred HHHHhhCCCCeEEEEEec
Q psy2263 79 HALLRNCPVNNISIVVRD 96 (232)
Q Consensus 79 ~~~l~~~~~~~v~l~v~r 96 (232)
...++..++..+.+++.|
T Consensus 86 ~~~l~~~~g~~v~l~v~R 103 (104)
T 3sfj_A 86 RKRLTKRSEEVVRLLVTR 103 (104)
T ss_dssp HHHHTCTTCSEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEEEc
Confidence 888876667899998876
No 80
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.8e-13 Score=94.43 Aligned_cols=85 Identities=27% Similarity=0.400 Sum_probs=73.0
Q ss_pred cceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
..++.+.+.+.+ .+|||++... ..+++|..|.+++||+++| |++||+|++|||.++.++++.++...++.
T Consensus 16 ~~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~ 94 (120)
T 2eno_A 16 VTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN 94 (120)
T ss_dssp EEEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH
T ss_pred CceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 456788888877 7799999873 4689999999999999999 99999999999999999988778888875
Q ss_pred CCCCeEEEEEecCCce
Q psy2263 85 CPVNNISIVVRDRPFE 100 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~ 100 (232)
. +..+.|++.|++..
T Consensus 95 ~-g~~v~l~v~R~~~~ 109 (120)
T 2eno_A 95 A-GYAVSLRVQHRLQV 109 (120)
T ss_dssp H-CSEEEEEEEEEEEC
T ss_pred C-CCeEEEEEEeCCcC
Confidence 4 68899999886553
No 81
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.1e-12 Score=93.72 Aligned_cols=84 Identities=25% Similarity=0.390 Sum_probs=72.2
Q ss_pred ceEEEEEEeeCCCccceEEeec------------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
.++.+.+.+.+.++|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++..+
T Consensus 24 ~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~ 103 (123)
T 2iwq_A 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA 103 (123)
T ss_dssp CCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4577888888889999999752 2579999999999999999 99999999999999999888889998
Q ss_pred HhhCCCCeEEEEEecCCc
Q psy2263 82 LRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 82 l~~~~~~~v~l~v~r~~~ 99 (232)
++.. +..+.|++.|...
T Consensus 104 l~~~-~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 104 IRKA-GNPVVFMVQSIIS 120 (123)
T ss_dssp HHHC-CSSEEEEEECCCC
T ss_pred HHcC-CCeEEEEEEECCc
Confidence 9875 4589999988543
No 82
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.46 E-value=1.4e-12 Score=90.78 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=69.8
Q ss_pred ccccceEEEEEEeeCCCccceEEee------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 11 MKYHQMTKLFLCKDIHGKIGLRVAA------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~lGi~~~~------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
........+.+ +. ..+|||++.. ...+++|..|.++|||+++| |++||+|++|||.++.++++.++...++
T Consensus 7 ~~~~~~~~v~l-~~-~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~ 84 (106)
T 3axa_A 7 HKEPEIITVTL-KK-QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84 (106)
T ss_dssp ---CCEEEEEE-EC-SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCceEEEEEE-CC-CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 33444555666 44 5679999975 34689999999999999999 9999999999999999988878888887
Q ss_pred hCCCCeEEEEEecCCce
Q psy2263 84 NCPVNNISIVVRDRPFE 100 (232)
Q Consensus 84 ~~~~~~v~l~v~r~~~~ 100 (232)
. .+..+.|++.|++..
T Consensus 85 ~-~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 85 R-TSSVVTLEVAKQGAI 100 (106)
T ss_dssp T-CCSEEEEEEECCCSS
T ss_pred c-CCCeEEEEEEeCCcc
Confidence 5 578999999986654
No 83
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.46 E-value=9.4e-13 Score=93.29 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=74.8
Q ss_pred cceEEEEEEeeCCCccceEEeecC----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
..++.+.+.+....+|||.+.... .+++|..|.+++||+++| |++||+|++|||.++.+.++.++..+++. .+.
T Consensus 14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~ 92 (117)
T 1v62_A 14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-ISE 92 (117)
T ss_dssp SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-CSS
T ss_pred CCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCC
Confidence 346888999988888999998742 349999999999999999 99999999999999988888889999984 689
Q ss_pred eEEEEEecCCce
Q psy2263 89 NISIVVRDRPFE 100 (232)
Q Consensus 89 ~v~l~v~r~~~~ 100 (232)
.+.|++.|....
T Consensus 93 ~v~l~v~r~~~~ 104 (117)
T 1v62_A 93 KVRLEILPVPQS 104 (117)
T ss_dssp EEEEEECCBTTB
T ss_pred eEEEEEEECCCC
Confidence 999999986654
No 84
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.46 E-value=1.6e-12 Score=91.42 Aligned_cols=86 Identities=20% Similarity=0.351 Sum_probs=71.5
Q ss_pred cccceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 12 KYHQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 12 ~~~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
....++.+.+.+.. .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++...++. .+
T Consensus 21 ~~~~~~~v~l~~~~-~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g 98 (112)
T 2r4h_A 21 QSMDFYTVELERGA-KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN-GG 98 (112)
T ss_dssp --CCEEEEEEECBT-TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TT
T ss_pred CCCceEEEEEEcCC-CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CC
Confidence 44567788888875 4599999864 4689999999999999999 99999999999999999988778877775 57
Q ss_pred CeEEEEEecCCc
Q psy2263 88 NNISIVVRDRPF 99 (232)
Q Consensus 88 ~~v~l~v~r~~~ 99 (232)
..+.|++.|++.
T Consensus 99 ~~v~l~v~R~~~ 110 (112)
T 2r4h_A 99 RRVRLFLKRGET 110 (112)
T ss_dssp TEEEEEEECCEE
T ss_pred CeEEEEEEeCCc
Confidence 889999988653
No 85
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.45 E-value=3.5e-13 Score=94.90 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=74.5
Q ss_pred eEEEEEEeeCCCccceEEee---------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 16 MTKLFLCKDIHGKIGLRVAA---------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~---------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
...+.+.+.. .+|||++.. ...+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..
T Consensus 5 ~~~v~l~k~~-~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 83 (113)
T 2g5m_B 5 LFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 83 (113)
T ss_dssp EEEEECCCCS-SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS
T ss_pred EEEEEEEeCC-CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 4556666654 569999987 24689999999999999999 999999999999999998887788888764
Q ss_pred CCCeEEEEEecCCceeeeEeec
Q psy2263 86 PVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
+..+.|++.|++...++.+.+
T Consensus 84 -g~~v~l~v~R~~~~~~~~v~p 104 (113)
T 2g5m_B 84 -KGRVRFMIGRERPGEQSEVAQ 104 (113)
T ss_dssp -CSSCEEEEEECCCCTTSSCSS
T ss_pred -CCeEEEEEEeCCCCCcchhhh
Confidence 789999999987766655443
No 86
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.45 E-value=3.5e-13 Score=96.89 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=81.7
Q ss_pred cceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGL-RFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
..++.+.+.+....+||+.+.... .+++|..|.++|||+++|| +.||+|++|||.++.+++..++..+++...+..+
T Consensus 7 ~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v 86 (127)
T 1b8q_A 7 PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH 86 (127)
T ss_dssp CCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCE
T ss_pred CceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence 457888999988788999998754 4899999999999999998 9999999999999999777888888987668899
Q ss_pred EEEEecCCceeeeEeec
Q psy2263 91 SIVVRDRPFERNVTLHK 107 (232)
Q Consensus 91 ~l~v~r~~~~~~v~l~~ 107 (232)
.+++.|++...++.+..
T Consensus 87 ~l~v~R~g~~~~~~~~~ 103 (127)
T 1b8q_A 87 VVLILRGPEGFTTHLET 103 (127)
T ss_dssp EEEEECCCCSEEECCCC
T ss_pred EEEEEeCCceEEEEEEE
Confidence 99999988877776654
No 87
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.45 E-value=3.1e-12 Score=89.54 Aligned_cols=82 Identities=30% Similarity=0.538 Sum_probs=68.3
Q ss_pred EEEEEeeCCCccceEEee---------cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 18 KLFLCKDIHGKIGLRVAA---------IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~---------~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
.+.+.+. .++|||++.. ...+++|..|.++|||+++||++||+|++|||.++.++++.+....++. ++.
T Consensus 18 ~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~ 95 (110)
T 1x5q_A 18 TLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGT 95 (110)
T ss_dssp EEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCS
T ss_pred EEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCC
Confidence 3445555 7789999974 3478999999999999999999999999999999999888666666664 689
Q ss_pred eEEEEEecCCcee
Q psy2263 89 NISIVVRDRPFER 101 (232)
Q Consensus 89 ~v~l~v~r~~~~~ 101 (232)
.+.|++.|+++..
T Consensus 96 ~v~l~v~R~g~~~ 108 (110)
T 1x5q_A 96 AVQMRVWRESGPS 108 (110)
T ss_dssp EEEEEEEECSSCC
T ss_pred eEEEEEEECCccC
Confidence 9999999977654
No 88
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=92.75 Aligned_cols=90 Identities=20% Similarity=0.346 Sum_probs=76.4
Q ss_pred ccccccceEEEEEEeeCCCccceEEeecC------------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCH
Q psy2263 9 EDMKYHQMTKLFLCKDIHGKIGLRVAAIH------------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNM 75 (232)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~lGi~~~~~~------------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~ 75 (232)
..-....++.+.+.+.+.+.|||++.... .+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus 9 ~~~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~ 88 (117)
T 2ehr_A 9 NFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88 (117)
T ss_dssp SSSCBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCH
T ss_pred ccccCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 34445567899999998888999997642 589999999999999999 99999999999999999988
Q ss_pred HHHHHHHhhCCCCeEEEEEecCCc
Q psy2263 76 HQVHALLRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 76 ~~~~~~l~~~~~~~v~l~v~r~~~ 99 (232)
.++...++. .+..+.|++.|...
T Consensus 89 ~~~~~~~~~-~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 89 SEAVEAIKN-AGNPVVFIVQSLSS 111 (117)
T ss_dssp HHHHHHHHT-SCSSEEEEECCBSC
T ss_pred HHHHHHHHc-CCCeEEEEEEECCC
Confidence 788888875 57889999987543
No 89
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.45 E-value=7.1e-13 Score=94.64 Aligned_cols=91 Identities=20% Similarity=0.391 Sum_probs=76.9
Q ss_pred ccceEEEEEEeeCCCccceEEeec-------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI-------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~-------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
....+.+.+.+.+..+|||++... ..+++|..|.+++||+++| |++||+|++|||+++.+++..++.++++.
T Consensus 13 ~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 92 (122)
T 1v5q_A 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD 92 (122)
T ss_dssp CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred cceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 345677888888888899999853 3568999999999999999 99999999999999998777888888887
Q ss_pred CC-CCeEEEEEecCCceeee
Q psy2263 85 CP-VNNISIVVRDRPFERNV 103 (232)
Q Consensus 85 ~~-~~~v~l~v~r~~~~~~v 103 (232)
.. ++.+.|++.|+.....+
T Consensus 93 ~~~g~~v~l~v~R~~~~~~~ 112 (122)
T 1v5q_A 93 SSITSKVTLEIEFDVAESVI 112 (122)
T ss_dssp HTTTTCEEEEEEEECCCSCC
T ss_pred CCCCCeEEEEEEECCccccC
Confidence 65 78999999997765433
No 90
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.45 E-value=9.2e-13 Score=88.84 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=68.9
Q ss_pred ceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCe
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNN 89 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~ 89 (232)
+.+.+.+.+.+ .+|||++.... .+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++... +..
T Consensus 2 ~~~~v~l~~~~-~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~ 80 (90)
T 2q9v_A 2 MEQDIFLWRKE-TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH 80 (90)
T ss_dssp EEEEEEEECBT-TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred CcEEEEEEECC-CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 45778888876 55999998642 569999999999999999 9999999999999998888888888887654 348
Q ss_pred EEEEEecC
Q psy2263 90 ISIVVRDR 97 (232)
Q Consensus 90 v~l~v~r~ 97 (232)
+.+++.|.
T Consensus 81 v~l~v~R~ 88 (90)
T 2q9v_A 81 VNLTVRQT 88 (90)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 89988774
No 91
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.45 E-value=1.1e-12 Score=94.43 Aligned_cols=89 Identities=27% Similarity=0.420 Sum_probs=75.2
Q ss_pred cccccceEEEEEEeeC-CCccceEEeecC------------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCH
Q psy2263 10 DMKYHQMTKLFLCKDI-HGKIGLRVAAIH------------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNM 75 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~-~~~lGi~~~~~~------------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~ 75 (232)
++....++.+.+.+.. .++|||++.... .+++|..|.++|||+++| |++||+|++|||.++.+.++
T Consensus 24 ~~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~ 103 (128)
T 1nf3_C 24 DILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103 (128)
T ss_dssp TTSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCH
T ss_pred ccCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence 4556678899998875 678999997532 479999999999999999 99999999999999988888
Q ss_pred HHHHHHHhhCCCCeEEEEEecCCc
Q psy2263 76 HQVHALLRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 76 ~~~~~~l~~~~~~~v~l~v~r~~~ 99 (232)
.++..+++.. +..+.|++.|.++
T Consensus 104 ~~~~~~l~~~-~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 104 DQVTDMMIAN-SRNLIITVRPANQ 126 (128)
T ss_dssp HHHHHHHHHT-TTSEEEEEECCCC
T ss_pred HHHHHHHHcC-CCeEEEEEEECCc
Confidence 8888888754 5679999988653
No 92
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.45 E-value=8.9e-13 Score=91.86 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=71.6
Q ss_pred cccccceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC--CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 10 DMKYHQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG--LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag--L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
......++.+.+.+...+.|||.+... ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus 12 ~~~~~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~ 91 (107)
T 3nfk_A 12 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA 91 (107)
T ss_dssp ----CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHC
T ss_pred CCCCCCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 444566888999998888899999764 3569999999999999999 99999999999999999998888888875
Q ss_pred CC---CCeEEEEEec
Q psy2263 85 CP---VNNISIVVRD 96 (232)
Q Consensus 85 ~~---~~~v~l~v~r 96 (232)
.. +..+.|++.|
T Consensus 92 ~~~~~~~~v~l~v~r 106 (107)
T 3nfk_A 92 SCERHSGELMLLVRP 106 (107)
T ss_dssp GGGSBTTBEEEEEEC
T ss_pred ccccCCcEEEEEEEc
Confidence 43 2488888876
No 93
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=9.7e-13 Score=90.89 Aligned_cols=85 Identities=24% Similarity=0.342 Sum_probs=72.5
Q ss_pred ccceEEEEEEeeCCCccceEEeec--CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
...+|.+.+.+... +||+.+... ..+++|..|.++|||+++||+.||+|++|||.++.++++.++...++. .+..+
T Consensus 4 ~~~~r~v~l~k~~~-g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v 81 (102)
T 2d90_A 4 GSSGRVVVIKKGSN-GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQT 81 (102)
T ss_dssp CSSSEEEEEECCSS-SSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEE
T ss_pred CCCCEEEEEeeCCC-CccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEE
Confidence 34678899988765 699999863 468999999999999999999999999999999999887778888876 47899
Q ss_pred EEEEecCCc
Q psy2263 91 SIVVRDRPF 99 (232)
Q Consensus 91 ~l~v~r~~~ 99 (232)
.|++.|++.
T Consensus 82 ~l~v~r~~~ 90 (102)
T 2d90_A 82 TLLVLDKEA 90 (102)
T ss_dssp EEEECSTTC
T ss_pred EEEEEECCC
Confidence 999987543
No 94
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.44 E-value=5.1e-13 Score=94.65 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=74.0
Q ss_pred ccceEEEEEEeeCCCccceEEeec---------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI---------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~---------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
....+.+.+.+.+..+|||++... ..+++|..|.+++||+ +||++||+|++|||+++.++++.++...++
T Consensus 12 ~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 90 (117)
T 2csj_A 12 IWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLR 90 (117)
T ss_dssp EEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred cceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence 345677888888878899999874 3479999999999997 889999999999999999998888888887
Q ss_pred hCCCCeEEEEEecCCceee
Q psy2263 84 NCPVNNISIVVRDRPFERN 102 (232)
Q Consensus 84 ~~~~~~v~l~v~r~~~~~~ 102 (232)
. .++.+.|++.|......
T Consensus 91 ~-~~~~v~l~v~R~~~~~~ 108 (117)
T 2csj_A 91 K-SGKIAAIVVKRPRKVQV 108 (117)
T ss_dssp H-SCSEEEEEEEEEEECCC
T ss_pred c-CCCeEEEEEEECCcccc
Confidence 6 47899999988654433
No 95
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=91.38 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=69.1
Q ss_pred cceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
..+|.+.+.+.+ .++|+.+.. ..+++|..|.++|||+++||+.||+|++|||.++.+|+..++.++++...+..+.++
T Consensus 22 ~~~r~v~l~k~~-~~~G~~l~~-~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~ 99 (109)
T 2vsv_A 22 SMPRSIRFTAEE-GDLGFTLRG-NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK 99 (109)
T ss_dssp HSCEEEEECCGG-GCCCEEEES-SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred CCCEEEEEEeCC-CceeEEEeC-CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence 356888998864 558999864 467899999999999999999999999999999998887788888886655668888
Q ss_pred EecC
Q psy2263 94 VRDR 97 (232)
Q Consensus 94 v~r~ 97 (232)
+.|.
T Consensus 100 V~~~ 103 (109)
T 2vsv_A 100 VVSL 103 (109)
T ss_dssp EESC
T ss_pred EEEC
Confidence 8774
No 96
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.44 E-value=1e-12 Score=86.72 Aligned_cols=77 Identities=14% Similarity=0.349 Sum_probs=65.0
Q ss_pred eEeecccccCCCccceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 148 QNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
..+..+.......+||.+..|.++. +.++|||+++| |++||+|++|||.++.+++++++.++++..+..+.|.+.|+
T Consensus 2 ~~~~~~~~~~~~~~g~~~~~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 80 (81)
T 2rcz_A 2 SKVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80 (81)
T ss_dssp EEEEEECCSTTCCCCEEEEEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred eEEEEEECCCCCCCCEEEeCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence 3444555566778898887777666 99999999999 99999999999999998888999999998777889988775
No 97
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.44 E-value=2.3e-12 Score=86.45 Aligned_cols=78 Identities=17% Similarity=0.388 Sum_probs=64.8
Q ss_pred EEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 18 KLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.+.+ +. ..+|||++... ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +..+.+++
T Consensus 6 ~v~l-~~-~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v 82 (88)
T 2uzc_A 6 SVSL-VG-PAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTL 82 (88)
T ss_dssp EEEE-ES-SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEE
T ss_pred EEEE-cC-CCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEE
Confidence 3444 33 46799999863 3578999999999999999999999999999999999877788878754 78899999
Q ss_pred ecCC
Q psy2263 95 RDRP 98 (232)
Q Consensus 95 ~r~~ 98 (232)
.|++
T Consensus 83 ~R~g 86 (88)
T 2uzc_A 83 QRES 86 (88)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8864
No 98
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=94.48 Aligned_cols=86 Identities=28% Similarity=0.390 Sum_probs=74.2
Q ss_pred cceEEEEEEeeCCCccceEEeecC------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCC-CCCHHHHHHHHhhC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIH------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVA-GSNMHQVHALLRNC 85 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~-~~~~~~~~~~l~~~ 85 (232)
..++.+.+.+...++|||++.... .+++|..|.+++||+++| |++||+|++|||.++. ++++.++..+++.
T Consensus 24 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~- 102 (128)
T 2db5_A 24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ- 102 (128)
T ss_dssp CEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-
T ss_pred CceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-
Confidence 456788899988888999997532 379999999999999999 9999999999999997 8888889998987
Q ss_pred CCCeEEEEEecCCce
Q psy2263 86 PVNNISIVVRDRPFE 100 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~ 100 (232)
.+..+.|++.|++..
T Consensus 103 ~~~~v~l~v~r~~~~ 117 (128)
T 2db5_A 103 TTGSLRLIVAREPVH 117 (128)
T ss_dssp CCSEEEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCC
Confidence 578999999986543
No 99
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=88.55 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=62.1
Q ss_pred CCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCC
Q psy2263 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRP 98 (232)
Q Consensus 25 ~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~ 98 (232)
...++|+++.....+++|..|.++|||+++||++||+|++|||.++.+.+..++..++... ++..+.+++.|++
T Consensus 15 ~~~~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 15 KSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp CSSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 3348999998777899999999999999999999999999999999554556777777653 4788999998754
No 100
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.44 E-value=1.1e-12 Score=91.35 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=70.4
Q ss_pred cceEEEEEEeeCCCccceEEee---------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAA---------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~---------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
...+.+.+.+.. .+|||++.. ...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++
T Consensus 8 ~~~~~v~l~k~~-~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~ 86 (107)
T 1wf8_A 8 LELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 86 (107)
T ss_dssp EEEEEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred ceEEEEEEEECC-CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 345667777764 569999987 34689999999999999999 9999999999999999988878888887
Q ss_pred hCCCCeEEEEEecCCc
Q psy2263 84 NCPVNNISIVVRDRPF 99 (232)
Q Consensus 84 ~~~~~~v~l~v~r~~~ 99 (232)
.. +..+.|++.|+..
T Consensus 87 ~~-~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 87 NT-KGNVRFVIGREKP 101 (107)
T ss_dssp HC-CSEEEEEEEEECC
T ss_pred cC-CCeEEEEEEeCCC
Confidence 64 7899999988543
No 101
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-12 Score=90.05 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=71.9
Q ss_pred cceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
..++.+.+.+...++|||++... ..+++|..|.++|||+++ ||++||+|++|||.++.++++.++..+++.. +..
T Consensus 8 ~~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~~~ 86 (103)
T 2dc2_A 8 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGE 86 (103)
T ss_dssp -CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSE
T ss_pred CCcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCc
Confidence 34678889998888999999874 247899999999999995 9999999999999999999888899888865 468
Q ss_pred EEEEEecCC
Q psy2263 90 ISIVVRDRP 98 (232)
Q Consensus 90 v~l~v~r~~ 98 (232)
+.|++.+..
T Consensus 87 v~l~v~~~~ 95 (103)
T 2dc2_A 87 IEFEVVYVA 95 (103)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 889888743
No 102
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.43 E-value=3.3e-12 Score=89.51 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=69.2
Q ss_pred EEEEEeeCCCccceEEeecC------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCe
Q psy2263 18 KLFLCKDIHGKIGLRVAAIH------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNN 89 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~~------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~ 89 (232)
.+.+.+. ..+|||++.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.. ++..
T Consensus 14 ~~~l~~~-~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~ 92 (111)
T 2koj_A 14 NIQLKKG-TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGT 92 (111)
T ss_dssp EEEEECB-TTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSE
T ss_pred EEEEEEC-CCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 3445554 466999998754 679999999999999999 999999999999999998888888888875 4789
Q ss_pred EEEEEecCCce
Q psy2263 90 ISIVVRDRPFE 100 (232)
Q Consensus 90 v~l~v~r~~~~ 100 (232)
+.|++.|++..
T Consensus 93 v~l~v~R~~~~ 103 (111)
T 2koj_A 93 VSLLVFRQEEA 103 (111)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEeCCCC
Confidence 99999987654
No 103
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-12 Score=88.17 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=70.8
Q ss_pred cceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
..+|.+.+.+.. .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.. +..
T Consensus 4 ~~~r~v~l~k~~-~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~ 81 (93)
T 2dkr_A 4 GSSGVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGS 81 (93)
T ss_dssp SCSCEEEEECCT-TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSE
T ss_pred CCCEEEEEEeCC-CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCc
Confidence 457888898875 6699999853 4689999999999999996 999999999999999998887888888764 467
Q ss_pred EEEEEecCCc
Q psy2263 90 ISIVVRDRPF 99 (232)
Q Consensus 90 v~l~v~r~~~ 99 (232)
+.|++.|++.
T Consensus 82 v~l~v~r~~~ 91 (93)
T 2dkr_A 82 VKLVVRSGPS 91 (93)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEEeCCC
Confidence 8999988653
No 104
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.43 E-value=1.6e-12 Score=87.34 Aligned_cols=81 Identities=25% Similarity=0.347 Sum_probs=65.9
Q ss_pred ceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNIS 91 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~ 91 (232)
.++.+.+.+.+ .+||+++.... .+++|..+ ++|||+ +||++||+|++|||.++.++++.++...++. .+++.+.
T Consensus 3 ~~~~v~l~k~~-~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~ 79 (88)
T 3bpu_A 3 ELITVHIVKGP-MGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79 (88)
T ss_dssp EEEEEEEECBT-TBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEE
T ss_pred cEEEEEEEcCC-CceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEE
Confidence 46778888876 56999998643 67888887 999999 9999999999999999999987788888874 3578999
Q ss_pred EEEecCC
Q psy2263 92 IVVRDRP 98 (232)
Q Consensus 92 l~v~r~~ 98 (232)
+++.|++
T Consensus 80 l~v~R~g 86 (88)
T 3bpu_A 80 LLVQRQT 86 (88)
T ss_dssp EEEEEEC
T ss_pred EEEEeCC
Confidence 9998854
No 105
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.43 E-value=6.1e-13 Score=95.73 Aligned_cols=97 Identities=23% Similarity=0.234 Sum_probs=79.6
Q ss_pred cccccceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 10 DMKYHQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
......++.+.+.+... +|||.+.... .+++|..|.++|||+++||+.||+|++|||.++.+++..++..+++...+
T Consensus 4 ~~~~~~~r~v~l~~~~~-g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 82 (128)
T 2kjd_A 4 PFTMLRPRLCTMKKGPS-GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (128)
T ss_dssp TTTTCCCEEEEEECCSS-SCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred CCCCCCcEEEEEecCCC-cccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 33455678888888764 5999998744 58999999999999999999999999999999999777888888887767
Q ss_pred CeEEEEEecCCceee--eEeec
Q psy2263 88 NNISIVVRDRPFERN--VTLHK 107 (232)
Q Consensus 88 ~~v~l~v~r~~~~~~--v~l~~ 107 (232)
..+.+++.|++.... +.+.+
T Consensus 83 ~~~~l~v~R~g~~~~~~~~l~~ 104 (128)
T 2kjd_A 83 ETKLLVVDRETDEFFKKCRVIP 104 (128)
T ss_dssp EEEEEEECHHHHHHHHHHTCCC
T ss_pred CEEEEEEEeCCcceEEEEEEEe
Confidence 788899999776655 44443
No 106
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-12 Score=89.42 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=71.7
Q ss_pred cceEEEEEEeeCCCccceEEeec-----CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI-----HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~-----~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
...+.+.+.+.. .+|||++... ..+++|..|.+++||+++| |+.||+|++|||.++.++++.++...++. .+
T Consensus 10 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g 87 (104)
T 2djt_A 10 SGHFSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GG 87 (104)
T ss_dssp CCCEEEEEECCS-SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TC
T ss_pred CceEEEEEEeCC-CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CC
Confidence 345677788776 5699999872 5789999999999999999 99999999999999999887778888876 57
Q ss_pred CeEEEEEecCCce
Q psy2263 88 NNISIVVRDRPFE 100 (232)
Q Consensus 88 ~~v~l~v~r~~~~ 100 (232)
..+.|++.|+++.
T Consensus 88 ~~v~l~v~R~g~~ 100 (104)
T 2djt_A 88 PQLHLVIRRPLSG 100 (104)
T ss_dssp SEEEEEECCCCCC
T ss_pred CeEEEEEEECCCC
Confidence 8999999886543
No 107
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.43 E-value=2.5e-12 Score=89.80 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=73.0
Q ss_pred cceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISI 92 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l 92 (232)
...+.+.+.|.+. +|||++.....+.+|..+.+ +++.+||++||+|++|||.++.++++.+++.+++..+ +..+.|
T Consensus 11 ~~~~~V~L~Kg~~-G~GFsI~~~~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L 87 (113)
T 3soe_A 11 GLLVTIPLIKGPK-GFGFAIADSPTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPL 87 (113)
T ss_dssp CEEEEEEEECBTT-BSSEEEEEETTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEE
T ss_pred CCEEEEEEEECCC-cccEEEeCCCCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence 4567888999855 59999987777888999987 5788999999999999999999999999999999865 889999
Q ss_pred EEecCCcee
Q psy2263 93 VVRDRPFER 101 (232)
Q Consensus 93 ~v~r~~~~~ 101 (232)
++.|.+...
T Consensus 88 ~V~R~g~~~ 96 (113)
T 3soe_A 88 LILRGGPPS 96 (113)
T ss_dssp EEEESSCC-
T ss_pred EEEECCccC
Confidence 999976543
No 108
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.43 E-value=2e-12 Score=88.31 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=68.4
Q ss_pred eEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
...+.+.+....+||+.+.....+++|..|.++|||+++| |++||+|++|||.++.++++.+....++. .+..+.|++
T Consensus 9 ~~~v~l~~~~~~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v 87 (96)
T 2qkv_A 9 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG-ANGKVSMEV 87 (96)
T ss_dssp CEEEEEECBTTBCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCcEEEEE
Confidence 3456677777778999988766889999999999999999 99999999999999999877666667764 456799998
Q ss_pred ecC
Q psy2263 95 RDR 97 (232)
Q Consensus 95 ~r~ 97 (232)
.|.
T Consensus 88 ~R~ 90 (96)
T 2qkv_A 88 TRP 90 (96)
T ss_dssp ECC
T ss_pred EeC
Confidence 874
No 109
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.43 E-value=1.4e-12 Score=87.97 Aligned_cols=69 Identities=33% Similarity=0.546 Sum_probs=60.7
Q ss_pred cCCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 156 DSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 156 ~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
.....+||.+..|.|..|.++|||+++||++||+|++|||+++.+.+++++.++++..+..+.|.+.+.
T Consensus 21 ~~~~~lG~~~~~G~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~ 89 (90)
T 1y7n_A 21 DLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 89 (90)
T ss_dssp STTSCCCEEEETTEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred CCccccCeEecCCEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 345678888877855559999999999999999999999999999999999999998888899998864
No 110
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.43 E-value=3.7e-13 Score=93.21 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=70.6
Q ss_pred ceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCe
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNN 89 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~ 89 (232)
..+.+.+.+. ..+|||++... ..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+ +..
T Consensus 9 ~~~~v~l~~~-~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~ 87 (103)
T 1uep_A 9 KELDVHLRRM-ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ 87 (103)
T ss_dssp EEECCEEESS-SSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred eEEEEEEEeC-CCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCc
Confidence 4555677774 55699999862 4679999999999999999 9999999999999999988888888888654 789
Q ss_pred EEEEEecCCc
Q psy2263 90 ISIVVRDRPF 99 (232)
Q Consensus 90 v~l~v~r~~~ 99 (232)
+.|++.|+..
T Consensus 88 v~l~v~R~~~ 97 (103)
T 1uep_A 88 VNLTVRRKVL 97 (103)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEeCCC
Confidence 9999988543
No 111
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.43 E-value=2.5e-12 Score=89.60 Aligned_cols=84 Identities=27% Similarity=0.479 Sum_probs=71.0
Q ss_pred ccceEEEEEEeeCCCccceEEeec-----------CCceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHH
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI-----------HEGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHA 80 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~-----------~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~ 80 (232)
....+.+.+.+. .++|||++... ..+++|..|.++|||+++ ||++||+|++|||+++.++++.++..
T Consensus 6 ~~~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~ 84 (107)
T 1uhp_A 6 SGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE 84 (107)
T ss_dssp SSEEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred CcEEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 345677888887 66799999763 368999999999999999 89999999999999999998888888
Q ss_pred HHhhCCCCeEEEEEecCC
Q psy2263 81 LLRNCPVNNISIVVRDRP 98 (232)
Q Consensus 81 ~l~~~~~~~v~l~v~r~~ 98 (232)
+++. .+..+.|++.|+.
T Consensus 85 ~~~~-~~~~v~l~v~R~~ 101 (107)
T 1uhp_A 85 AFKT-AKEPIVVQVLRRT 101 (107)
T ss_dssp HHHH-CCSSEEEEEEECC
T ss_pred HHHc-CCCcEEEEEEeCC
Confidence 8876 4678889887743
No 112
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.43 E-value=2.2e-12 Score=87.59 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=68.8
Q ss_pred cceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
...|.+.+.+.. .+|||.+.. ..+++|..|.++|||+++||+.||+|++|||+++.++++.++...++ .++.+.|+
T Consensus 7 ~~~r~v~l~~~~-~~~G~~l~~-~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~ 82 (93)
T 2dls_A 7 GVQRCVIIQKDQ-HGFGFTVSG-DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALT 82 (93)
T ss_dssp CCEEEEEEECSS-SSCCEEEEC-SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEE
T ss_pred CCCEEEEEEeCC-CceeEEEeC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEE
Confidence 356778888875 459999975 46899999999999999999999999999999999998766666665 47999999
Q ss_pred EecCCc
Q psy2263 94 VRDRPF 99 (232)
Q Consensus 94 v~r~~~ 99 (232)
+.|++.
T Consensus 83 v~R~~~ 88 (93)
T 2dls_A 83 LLGSSS 88 (93)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 998543
No 113
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.43 E-value=2.9e-12 Score=92.29 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=72.2
Q ss_pred cccceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-
Q psy2263 12 KYHQMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP- 86 (232)
Q Consensus 12 ~~~~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~- 86 (232)
.......+.+.+.. .+|||++.... .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++...
T Consensus 15 ~~g~~~~v~l~~~~-~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~ 93 (129)
T 2kpk_A 15 LKGKFIHTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPI 93 (129)
T ss_dssp SCSEEEEEEEEECS-SCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred cCCcEEEEEEEECC-CcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 34455667777764 46999998732 459999999999999999 9999999999999999988888999998775
Q ss_pred CCeEEEEEecCC
Q psy2263 87 VNNISIVVRDRP 98 (232)
Q Consensus 87 ~~~v~l~v~r~~ 98 (232)
+..+.|++.|+.
T Consensus 94 g~~v~l~v~R~~ 105 (129)
T 2kpk_A 94 GASVDLELCRGY 105 (129)
T ss_dssp TEEEEEEEEECS
T ss_pred CCeEEEEEEeCC
Confidence 788999998854
No 114
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.43 E-value=2.3e-12 Score=92.36 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=71.1
Q ss_pred ceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
..+.+.+.+.+.++|||++..+. .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++.. +..+
T Consensus 19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~~v 97 (125)
T 3hpk_A 19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEV 97 (125)
T ss_dssp EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEE
T ss_pred CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeE
Confidence 45778889988899999998743 578999999999999999 999999999999999998888899999875 4568
Q ss_pred EEEEec
Q psy2263 91 SIVVRD 96 (232)
Q Consensus 91 ~l~v~r 96 (232)
.+++.|
T Consensus 98 ~l~v~r 103 (125)
T 3hpk_A 98 TIHYNK 103 (125)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998887
No 115
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.43 E-value=9.3e-13 Score=91.32 Aligned_cols=85 Identities=27% Similarity=0.436 Sum_probs=70.6
Q ss_pred ccccccceEEEEEEeeCCCccceEEeec----------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHH
Q psy2263 9 EDMKYHQMTKLFLCKDIHGKIGLRVAAI----------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQV 78 (232)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~lGi~~~~~----------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~ 78 (232)
+.+.....+.+.+.+.+.+.|||.+... ..+++|..|.+++||+++||++||+|++|||+++.++++.++
T Consensus 9 ~p~s~~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~ 88 (104)
T 2z17_A 9 SDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQV 88 (104)
T ss_dssp --CCCSCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHH
T ss_pred ccCCCCcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHH
Confidence 3445566788889998888899999862 358999999999999999999999999999999998888889
Q ss_pred HHHHhhCCCCeEEEEE
Q psy2263 79 HALLRNCPVNNISIVV 94 (232)
Q Consensus 79 ~~~l~~~~~~~v~l~v 94 (232)
..+++... ..+.|++
T Consensus 89 ~~~l~~~~-~~v~l~v 103 (104)
T 2z17_A 89 VDLIRSSG-NLLTIET 103 (104)
T ss_dssp HHHHHHTT-TEEEEEC
T ss_pred HHHHHhCC-CcEEEEE
Confidence 99998764 4776654
No 116
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=89.13 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=68.2
Q ss_pred ceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.++.+.+.+.. .+|||.+... .+++|..|.++|||+++||+.||+|++|||.++.++++.++...++.. +..+.|++
T Consensus 2 ~~r~v~l~~~~-~g~G~~~~~~-~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v 78 (83)
T 2kv8_A 2 RVRSVEVARGR-AGYGFTLSGQ-APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVI 78 (83)
T ss_dssp CEEEEEECCCS-SCCSCBCCCS-SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEE
T ss_pred CcEEEEEEeCC-CcccEEEEcC-CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEE
Confidence 46888898887 4599988753 579999999999999999999999999999999999887888888654 56788988
Q ss_pred ecC
Q psy2263 95 RDR 97 (232)
Q Consensus 95 ~r~ 97 (232)
.|+
T Consensus 79 ~R~ 81 (83)
T 2kv8_A 79 AEG 81 (83)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 117
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.42 E-value=3e-12 Score=90.24 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=70.5
Q ss_pred cccceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q psy2263 12 KYHQMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPV 87 (232)
Q Consensus 12 ~~~~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 87 (232)
+...++.+.+.+.+.++||+++.... .+++|..|.++|||+++| |+.||+|++|||.++.+.+..++..+++...
T Consensus 21 q~~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~- 99 (114)
T 2gzv_A 21 QSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK- 99 (114)
T ss_dssp -CCCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-
T ss_pred ccCCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence 44567899999999999999998654 369999999999999999 9999999999999997767778888887654
Q ss_pred CeEEEEEec
Q psy2263 88 NNISIVVRD 96 (232)
Q Consensus 88 ~~v~l~v~r 96 (232)
..+.|++.+
T Consensus 100 ~~v~l~v~~ 108 (114)
T 2gzv_A 100 GEVTIHYNK 108 (114)
T ss_dssp SEEEEEEEC
T ss_pred CeEEEEEEe
Confidence 557777764
No 118
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.42 E-value=1.5e-12 Score=90.56 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=68.2
Q ss_pred EEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
..+.+.+....+||+.+.....|++|..|.++|||+++| |++||+|++|||+++.+.++.+....++. .+..+.+++.
T Consensus 4 ~~v~L~k~~~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 82 (106)
T 2la8_A 4 FNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVT 82 (106)
T ss_dssp EEEEECCBSSSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS-CBSCEEEEEE
T ss_pred EEEEEEeCCCCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEE
Confidence 456777777788999998767899999999999999999 99999999999999999887667777764 4567999888
Q ss_pred cC
Q psy2263 96 DR 97 (232)
Q Consensus 96 r~ 97 (232)
|.
T Consensus 83 R~ 84 (106)
T 2la8_A 83 RP 84 (106)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 119
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.42 E-value=3e-12 Score=90.64 Aligned_cols=89 Identities=22% Similarity=0.408 Sum_probs=72.5
Q ss_pred ceEEEEEEeeCCCccceEEeec-CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI-HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~-~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
.++.+.+.+.. .+||+.+... ..+++|..|.+++||+++||++||+|++|||+++.++++.+....+. .++..+.|+
T Consensus 19 ~~~~v~l~~~~-~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~ 96 (117)
T 1uit_A 19 EPRHVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITIL 96 (117)
T ss_dssp CCEEEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEE
T ss_pred CCEEEEEEeCC-CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEE
Confidence 45677777765 6799999865 47899999999999999999999999999999999998754443343 457899999
Q ss_pred EecCCceeeeEe
Q psy2263 94 VRDRPFERNVTL 105 (232)
Q Consensus 94 v~r~~~~~~v~l 105 (232)
+.|++..+++.+
T Consensus 97 v~r~~~~~~~~~ 108 (117)
T 1uit_A 97 AQYNPHVHQLSS 108 (117)
T ss_dssp ECCCSCCCCCCC
T ss_pred EEECCchhhhhh
Confidence 999887766544
No 120
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.41 E-value=1.1e-12 Score=89.32 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=68.6
Q ss_pred EEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 19 LFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 19 ~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
+.+.+....+|||++.... .+++|..|.++|||+++||++||+|++|||.++.++++.++...++... ..+.|++.
T Consensus 8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~ 86 (94)
T 1vb7_A 8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLD 86 (94)
T ss_dssp EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEE
T ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEE
Confidence 4455555578999997632 4789999999999999999999999999999999998888888888654 88999999
Q ss_pred cCCcee
Q psy2263 96 DRPFER 101 (232)
Q Consensus 96 r~~~~~ 101 (232)
|+++..
T Consensus 87 R~g~~~ 92 (94)
T 1vb7_A 87 RSSGPS 92 (94)
T ss_dssp CCCCCC
T ss_pred ECCcCC
Confidence 976543
No 121
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.41 E-value=3e-12 Score=86.62 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=61.6
Q ss_pred CCccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+||.+. .|.++. |.++|||+++| |++||+|++|||+++.+.+++++..+++..+..+.|.+.|...|
T Consensus 15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 91 (92)
T 2qg1_A 15 GKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRISTY 91 (92)
T ss_dssp TSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCCCC
T ss_pred CCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEccccc
Confidence 456888874 256666 99999999999 99999999999999999999999999998889999999988654
No 122
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.41 E-value=5.4e-13 Score=94.11 Aligned_cols=90 Identities=27% Similarity=0.359 Sum_probs=76.8
Q ss_pred ceEEEEEEeeCCCccceEEee--cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAA--IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~--~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
.++.+.+.+.....+|+.+.. ...+++|..|.++|||+++||+.||+|++|||.++.++++.++...++.. ++.+.|
T Consensus 13 dp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l 91 (114)
T 2edz_A 13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS-GNSVTL 91 (114)
T ss_dssp CCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHT-CSEEEE
T ss_pred CCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEE
Confidence 467788888888889998875 34789999999999999999999999999999999998887888888764 799999
Q ss_pred EEecCCceeeeEe
Q psy2263 93 VVRDRPFERNVTL 105 (232)
Q Consensus 93 ~v~r~~~~~~v~l 105 (232)
++.|+++..++.+
T Consensus 92 ~v~R~~~~~~~~~ 104 (114)
T 2edz_A 92 LVLDGDSYEKAVK 104 (114)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEEECCcceehhh
Confidence 9999776555443
No 123
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.41 E-value=2e-12 Score=88.31 Aligned_cols=67 Identities=27% Similarity=0.445 Sum_probs=58.5
Q ss_pred CCccceEEec-------------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeC
Q psy2263 158 AGHVGFQFKR-------------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223 (232)
Q Consensus 158 ~~~~g~~~~~-------------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r 223 (232)
...|||.+.. +.++. |.++|||+++||++||+|++|||+++.+++++++.++++..++.+.|.+.+
T Consensus 15 ~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 94 (96)
T 2ego_A 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94 (96)
T ss_dssp TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEC
T ss_pred CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 4577877753 34555 999999999999999999999999999999999999999988899999877
Q ss_pred C
Q psy2263 224 S 224 (232)
Q Consensus 224 ~ 224 (232)
.
T Consensus 95 ~ 95 (96)
T 2ego_A 95 G 95 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.41 E-value=3.4e-12 Score=90.61 Aligned_cols=84 Identities=29% Similarity=0.555 Sum_probs=71.5
Q ss_pred ccceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
.+.++.+.+.+... +||+++.... .+++|..|.++|||+++| |++||+|++|||.++.++++.+....++. .+..
T Consensus 12 ~~~~~~v~l~k~~~-glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~ 89 (119)
T 1tp5_A 12 PREPRRIVIHRGST-GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQT 89 (119)
T ss_dssp CCSCEEEEEECTTS-CCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSE
T ss_pred CCccEEEEEEECCC-CccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence 45688899998764 4999998754 789999999999999999 99999999999999999987666666664 5788
Q ss_pred EEEEEecCC
Q psy2263 90 ISIVVRDRP 98 (232)
Q Consensus 90 v~l~v~r~~ 98 (232)
+.+++.|++
T Consensus 90 v~l~v~r~~ 98 (119)
T 1tp5_A 90 VTIIAQYKP 98 (119)
T ss_dssp EEEEEEECH
T ss_pred EEEEEEECC
Confidence 999998854
No 125
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.40 E-value=5e-13 Score=96.07 Aligned_cols=81 Identities=27% Similarity=0.397 Sum_probs=68.7
Q ss_pred EEEEeeCCCccceEEeecC-------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-----
Q psy2263 19 LFLCKDIHGKIGLRVAAIH-------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC----- 85 (232)
Q Consensus 19 ~~l~~~~~~~lGi~~~~~~-------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~----- 85 (232)
+.+.+....+|||++.... .+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++..
T Consensus 29 v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g 108 (127)
T 1wg6_A 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEG 108 (127)
T ss_dssp EECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcccc
Confidence 4444466788999998643 479999999999999999 999999999999999999988899888864
Q ss_pred -CCCeEEEEEecCCc
Q psy2263 86 -PVNNISIVVRDRPF 99 (232)
Q Consensus 86 -~~~~v~l~v~r~~~ 99 (232)
++..+.|++.|+..
T Consensus 109 ~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 109 NIRGMIQLVILRRSG 123 (127)
T ss_dssp HHTCEEEEEEEECSC
T ss_pred CCCCEEEEEEEeCCC
Confidence 37899999988654
No 126
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.40 E-value=1.9e-12 Score=88.42 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=61.1
Q ss_pred CccceEEec--------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 159 GHVGFQFKR--------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 159 ~~~g~~~~~--------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
..+||.+.. |.++. |.++|||+++||++||+|++|||.++.+++++++..+++..+..+.|.+.|+....
T Consensus 14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 92 (96)
T 2v90_A 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADR 92 (96)
T ss_dssp TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTTS
T ss_pred CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCcc
Confidence 467777753 46666 99999999999999999999999999999999999999988889999999887644
No 127
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.40 E-value=6.5e-12 Score=87.33 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=63.9
Q ss_pred EEeeCCCccceEEeecC--------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 21 LCKDIHGKIGLRVAAIH--------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 21 l~~~~~~~lGi~~~~~~--------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
+.+....+|||++..+. .+++|..|.++|||+++| |+.||+|++|||.++.++++.++...++. .+..+.
T Consensus 7 ~~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~ 85 (106)
T 4amh_A 7 LVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVY 85 (106)
T ss_dssp -----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEE
T ss_pred cCCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEE
Confidence 34556678999998642 389999999999999999 99999999999999999888888888875 467999
Q ss_pred EEEecCCc
Q psy2263 92 IVVRDRPF 99 (232)
Q Consensus 92 l~v~r~~~ 99 (232)
|++.|++.
T Consensus 86 l~v~R~~~ 93 (106)
T 4amh_A 86 LKVAKPGS 93 (106)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 99999654
No 128
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=3e-12 Score=90.26 Aligned_cols=87 Identities=17% Similarity=0.272 Sum_probs=74.3
Q ss_pred ccceEEEEEEeeCCCccceEEeecC----------CceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIH----------EGVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~----------~g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
...++.+.+.+....+|||.+.... .+++|..|.++|||++ +||++||+|++|||.++.++++.++..+
T Consensus 8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~ 87 (114)
T 1uew_A 8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKL 87 (114)
T ss_dssp CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3456888999887788999997521 1569999999999999 9999999999999999999888889999
Q ss_pred HhhCCCCeEEEEEecCCce
Q psy2263 82 LRNCPVNNISIVVRDRPFE 100 (232)
Q Consensus 82 l~~~~~~~v~l~v~r~~~~ 100 (232)
++. .+..+.|++.|++..
T Consensus 88 l~~-~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 88 IKD-AGLSVTLRIIPQEEL 105 (114)
T ss_dssp HHH-TTTEEEEEECCCSCC
T ss_pred HHc-CCCeEEEEEEeCCcC
Confidence 986 688999999986654
No 129
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=8.5e-13 Score=94.49 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=75.8
Q ss_pred cccceEEEEEEe-eCCCccceEEeecC-----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 12 KYHQMTKLFLCK-DIHGKIGLRVAAIH-----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 12 ~~~~~~~~~l~~-~~~~~lGi~~~~~~-----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
.....+.+.+.+ ....+||+++.... .+++|..|.+++||+++| |++||+|++|||+++.++ .++..+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~ 93 (124)
T 1wh1_A 16 EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTS 93 (124)
T ss_dssp SSCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTC
T ss_pred CcceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence 334444455544 44568999998754 689999999999999999 999999999999999975 678888877
Q ss_pred CCCCeEEEEEecCCceeeeEeecC
Q psy2263 85 CPVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
.++..+.|++.|++..+......+
T Consensus 94 ~~g~~v~l~v~R~g~~~~~~~~~~ 117 (124)
T 1wh1_A 94 EENKNFSLLIARPELQLDEGWMDD 117 (124)
T ss_dssp SSCCSCCEEEEECSSCCCCCCCCS
T ss_pred CCCCEEEEEEEECCEEeecccCCC
Confidence 567899999999887776655443
No 130
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=90.77 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=72.2
Q ss_pred ccceEEEEEEeeCCCccceEEeec--CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
...+|.+.+.+. .++||+.+... ..+++|..|.++|||+++||+.||+|++|||.++.++++.++...++.. +..+
T Consensus 6 ~~~~r~v~l~k~-~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v 83 (106)
T 2eei_A 6 SGQPRLCYLVKE-GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS-GSRV 83 (106)
T ss_dssp CSSSEEEEEECC-SSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHH-CSEE
T ss_pred CCCCEEEEEEEC-CCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeE
Confidence 456788999985 66799999753 4689999999999999999999999999999999998887777777643 6788
Q ss_pred EEEEecCCce
Q psy2263 91 SIVVRDRPFE 100 (232)
Q Consensus 91 ~l~v~r~~~~ 100 (232)
.+++.|.+..
T Consensus 84 ~l~v~r~~~~ 93 (106)
T 2eei_A 84 MFLLVDKETD 93 (106)
T ss_dssp EEEECCTTTS
T ss_pred EEEEEcCchh
Confidence 9999886544
No 131
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=91.20 Aligned_cols=91 Identities=25% Similarity=0.276 Sum_probs=73.9
Q ss_pred ccccceEEEEEEeeCCCccceEEeecC----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 11 MKYHQMTKLFLCKDIHGKIGLRVAAIH----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~lGi~~~~~~----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
+.....+.+.+.+.. .+|||++.... .+++|..|.++|||+++| |+.||+|++|||.++.++++.++...++..
T Consensus 13 ~~~~~~~~v~l~~~~-~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 91 (116)
T 2dm8_A 13 IVPGQEMIIEISKGR-SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT 91 (116)
T ss_dssp CCTTSCEEEEEECCS-SCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred cCCCCEEEEEEEECC-CcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 334445677777664 56999998644 589999999999999999 999999999999999998887888888754
Q ss_pred CCCeEEEEEecCCceeee
Q psy2263 86 PVNNISIVVRDRPFERNV 103 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v 103 (232)
+..+.|++.|++.....
T Consensus 92 -~~~v~l~v~R~~~~~~~ 108 (116)
T 2dm8_A 92 -PQKVRLVVYRDEAHYRD 108 (116)
T ss_dssp -CSEEEEEEECCSSCCCS
T ss_pred -CCeEEEEEEeCCccccc
Confidence 48899999987665443
No 132
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.40 E-value=1.9e-12 Score=92.63 Aligned_cols=78 Identities=31% Similarity=0.365 Sum_probs=66.6
Q ss_pred eCCCccceEEee-cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEecCCcee
Q psy2263 24 DIHGKIGLRVAA-IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRDRPFER 101 (232)
Q Consensus 24 ~~~~~lGi~~~~-~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r~~~~~ 101 (232)
.+.+.||+.+.. ...+++|..|.++|||+++||++||+|++|||.++.++++.++...+.. .++..+.|++.|+++..
T Consensus 36 ~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~ 115 (124)
T 3tsv_A 36 RKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY 115 (124)
T ss_dssp ECSSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHHH
T ss_pred CCCCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCchh
Confidence 335679999986 4578999999999999999999999999999999999987778887765 45889999999876543
No 133
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.39 E-value=3.4e-12 Score=86.21 Aligned_cols=70 Identities=27% Similarity=0.417 Sum_probs=58.9
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
..+||.+. .|.++. |.++|||+++||++||+|++|||.++.++++.++..+++..++.+.+.+.++...+
T Consensus 14 ~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~ 89 (91)
T 1g9o_A 14 NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE 89 (91)
T ss_dssp TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCSC
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCccc
Confidence 46788874 256666 99999999999999999999999999999999999999998888777776655433
No 134
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.39 E-value=1.5e-12 Score=89.59 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=71.5
Q ss_pred CCcccccccceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 6 PSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
|...+........+.+.+.. .++|+.+... .+++|..|.++|||+++||+.||+|++|||+++.++++.++..+++..
T Consensus 6 ~~~~~~~~~~~~~v~l~~~~-~g~G~~~~~~-~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 83 (100)
T 1whd_A 6 SGEGDPENGEKLQITIRRGK-DGFGFTICCD-SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 83 (100)
T ss_dssp TTCSSCCCCEEEEEEEECCS-SSSSCBCCCS-SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCccccceEEEEEECCC-CeeeEEEeCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44445544555666676654 4599988754 679999999999999999999999999999999998887888888765
Q ss_pred CCCeEEEEEecCC
Q psy2263 86 PVNNISIVVRDRP 98 (232)
Q Consensus 86 ~~~~v~l~v~r~~ 98 (232)
+..+.|++.|+.
T Consensus 84 -~~~v~l~v~R~~ 95 (100)
T 1whd_A 84 -PSEIILLVWRVS 95 (100)
T ss_dssp -SSEEEEEEEECC
T ss_pred -CCeEEEEEEECC
Confidence 456889888854
No 135
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.39 E-value=8.1e-12 Score=85.26 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=70.4
Q ss_pred cceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISI 92 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l 92 (232)
...+.+.+.+.. .+|||.+.....+++|..|.++ |+.+||++||+|++|||+++.++++.++..+++..+ ++.+.|
T Consensus 9 ~~~~~v~l~~~~-~g~G~~i~~~~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l 85 (96)
T 1ujv_A 9 AELMTLTIVKGA-QGFGFTIADSPTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSL 85 (96)
T ss_dssp CCCEEEEEECCS-SSSSEEEEEETTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEE
T ss_pred ceEEEEEEEeCC-CceeEEEEcCCCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence 345667777765 5699999877778999999983 788999999999999999999998888999998875 889999
Q ss_pred EEecCCc
Q psy2263 93 VVRDRPF 99 (232)
Q Consensus 93 ~v~r~~~ 99 (232)
++.|++.
T Consensus 86 ~v~R~g~ 92 (96)
T 1ujv_A 86 IIHRGSG 92 (96)
T ss_dssp EEECCSS
T ss_pred EEEECCC
Confidence 9998654
No 136
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.39 E-value=2.6e-12 Score=86.18 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=59.6
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+|||.+.+ +.++. |.++|||+++||++||+|++|||+++.++++.++..+++..+..+.|.+.|+.
T Consensus 12 ~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 86 (88)
T 2uzc_A 12 PAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES 86 (88)
T ss_dssp SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred CCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence 3568888864 35555 99999999999999999999999999999999999999988889999998864
No 137
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.39 E-value=3.3e-12 Score=88.35 Aligned_cols=88 Identities=14% Similarity=0.284 Sum_probs=71.5
Q ss_pred EEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIV 93 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 93 (232)
..+.+. ...+|||.+.... .+++|..|.++|||+++||+.||+|++|||.++.++++.++...++.. +..+.|+
T Consensus 7 ~~v~l~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~ 83 (103)
T 1wf7_A 7 GSVSLV--GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMT 83 (103)
T ss_dssp EEEEEE--SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEE
T ss_pred EEEEEe--CCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEE
Confidence 445554 3466999998642 358999999999999999999999999999999999877777777754 7889999
Q ss_pred EecCCceeeeEeec
Q psy2263 94 VRDRPFERNVTLHK 107 (232)
Q Consensus 94 v~r~~~~~~v~l~~ 107 (232)
+.|++...++.+.+
T Consensus 84 v~R~g~~~~~~v~p 97 (103)
T 1wf7_A 84 LQRASAAAKSEPVS 97 (103)
T ss_dssp ECCCSCCCCCCCCC
T ss_pred EEeCCCcCCCCCCC
Confidence 99988777666544
No 138
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=93.05 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=61.1
Q ss_pred CCccceEEecC---------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKRG---------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~g---------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.+.+||.+.+| +++. |.++|||+++| |++||+|++|||.++.++++++++.+++..+..+.|++.|...
T Consensus 35 ~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~~~ 114 (118)
T 3b76_A 35 GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114 (118)
T ss_dssp TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEEEE
T ss_pred CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 46788888654 5666 99999999999 9999999999999999999999999999999999999987654
No 139
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.39 E-value=1e-11 Score=88.38 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=67.5
Q ss_pred EEEEEEeeCCCccceEEeecC------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CC
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIH------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VN 88 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~ 88 (232)
..+.+.+. ..+|||++.... .+++|..|.++|||+++| |++||+|++|||.++.+++..++.++++..+ +.
T Consensus 32 ~~v~l~~~-~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~ 110 (121)
T 2kom_A 32 LNIQLKKG-TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEG 110 (121)
T ss_dssp EEEEEECC-TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSC
T ss_pred EEEEEEcC-CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCC
Confidence 33444444 556999998753 679999999999999999 9999999999999999988778888888754 78
Q ss_pred eEEEEEecCC
Q psy2263 89 NISIVVRDRP 98 (232)
Q Consensus 89 ~v~l~v~r~~ 98 (232)
.+.|++.|++
T Consensus 111 ~v~l~v~R~g 120 (121)
T 2kom_A 111 TVSLLVFRQE 120 (121)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999998854
No 140
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.39 E-value=5e-12 Score=91.28 Aligned_cols=74 Identities=30% Similarity=0.492 Sum_probs=65.3
Q ss_pred CCCccceEEeec------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEec
Q psy2263 25 IHGKIGLRVAAI------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRD 96 (232)
Q Consensus 25 ~~~~lGi~~~~~------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r 96 (232)
..++|||++..+ ..+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++.. ++..+.|++.|
T Consensus 46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 125 (131)
T 1wfg_A 46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125 (131)
T ss_dssp SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEE
T ss_pred CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEc
Confidence 677899999752 2389999999999999999 999999999999999999888899999876 57899999988
Q ss_pred CC
Q psy2263 97 RP 98 (232)
Q Consensus 97 ~~ 98 (232)
++
T Consensus 126 ~g 127 (131)
T 1wfg_A 126 SG 127 (131)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 141
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=3.9e-12 Score=88.30 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=67.8
Q ss_pred eEEEEEEeeCCCccceEEeec---------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI---------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~---------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
...+.+.+... +|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..
T Consensus 8 ~~~v~l~~~~~-glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (105)
T 1wha_A 8 RHVACLARSER-GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86 (105)
T ss_dssp EEEEEECCCTT-CCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred eEEEEEEeCCC-ccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 34555666654 499999863 3589999999999999999 999999999999999998888888888754
Q ss_pred CCCeEEEEEecCC
Q psy2263 86 PVNNISIVVRDRP 98 (232)
Q Consensus 86 ~~~~v~l~v~r~~ 98 (232)
+..+.|++.|++
T Consensus 87 -g~~v~l~v~R~~ 98 (105)
T 1wha_A 87 -SPTIALLLEREA 98 (105)
T ss_dssp -CSCEEEEEEECC
T ss_pred -CCeEEEEEEECC
Confidence 788999998854
No 142
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=2.6e-12 Score=89.61 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=71.7
Q ss_pred cceEEEEEEeeCCCccceEEe-----e------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVA-----A------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~-----~------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
...+.+.+.+.. .+|||++. . ...+++|..|.++|||+++| |+.||+|++|||.++.++++.++...
T Consensus 8 ~~~~~v~l~k~~-~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 86 (108)
T 1q7x_A 8 GDIFEVELAKND-NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET 86 (108)
T ss_dssp SSEEEEEEESSS-CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred CcEEEEEEEECC-CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 456778888764 56999998 3 24689999999999999999 99999999999999997776678888
Q ss_pred HhhCCCCeEEEEEecCCcee
Q psy2263 82 LRNCPVNNISIVVRDRPFER 101 (232)
Q Consensus 82 l~~~~~~~v~l~v~r~~~~~ 101 (232)
++.. +..+.|++.|++.+.
T Consensus 87 ~~~~-g~~v~l~v~R~~~~~ 105 (108)
T 1q7x_A 87 LRNT-GQVVHLLLEKGQSPT 105 (108)
T ss_dssp HHHT-TSEEEEEEECCCCSC
T ss_pred HHcC-CCeEEEEEEeCCccC
Confidence 8764 789999999876543
No 143
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.38 E-value=2.6e-12 Score=89.36 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=61.9
Q ss_pred cCCCccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 156 DSAGHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 156 ~~~~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
.....|||.+.+ |+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|++.
T Consensus 10 ~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~ 89 (106)
T 4amh_A 10 RGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVA 89 (106)
T ss_dssp --CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEE
T ss_pred CCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Confidence 456778888863 45666 99999999999 999999999999999999999999999999899999999
Q ss_pred CCcc
Q psy2263 223 PSYV 226 (232)
Q Consensus 223 r~~~ 226 (232)
|+..
T Consensus 90 R~~~ 93 (106)
T 4amh_A 90 KPGS 93 (106)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 8764
No 144
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.38 E-value=1.7e-12 Score=90.30 Aligned_cols=72 Identities=26% Similarity=0.478 Sum_probs=62.8
Q ss_pred cCCCccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 156 DSAGHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 156 ~~~~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.....+||++. .|.++. |.++|||+++||++||+|++|||.++.+++|.++..+++..+..+.|.+.|+..+
T Consensus 10 ~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 87 (106)
T 3ngh_A 10 QEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY 87 (106)
T ss_dssp CTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECHHHH
T ss_pred CCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCee
Confidence 34467888875 357677 9999999999999999999999999999999999999998889999999987654
No 145
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.38 E-value=2.5e-12 Score=88.24 Aligned_cols=79 Identities=33% Similarity=0.398 Sum_probs=65.1
Q ss_pred EEEEeeCCCccceEEeecC----------CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 19 LFLCKDIHGKIGLRVAAIH----------EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 19 ~~l~~~~~~~lGi~~~~~~----------~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
+.+.+ ...++||++.... .+++|..|.++|||+++||+.||+|++|||.++.++++.++...++. +++
T Consensus 6 v~l~~-~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~ 83 (99)
T 3khf_A 6 IVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK-SGN 83 (99)
T ss_dssp EEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCS
T ss_pred EEEEe-CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCC
Confidence 34555 4567999997532 25689999999999999999999999999999998888888888884 579
Q ss_pred eEEEEEecCCc
Q psy2263 89 NISIVVRDRPF 99 (232)
Q Consensus 89 ~v~l~v~r~~~ 99 (232)
.+.|++.|.+.
T Consensus 84 ~v~l~v~r~~~ 94 (99)
T 3khf_A 84 KISLRTTALEN 94 (99)
T ss_dssp EEEEEEECSCS
T ss_pred EEEEEEEECCC
Confidence 99999998654
No 146
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.38 E-value=2.7e-12 Score=86.49 Aligned_cols=68 Identities=32% Similarity=0.484 Sum_probs=60.1
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .|.++. |.++|||+++||++||+|++|||.++.+++|+++.++++..+..+.|.+.|...
T Consensus 15 ~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 88 (90)
T 2he4_A 15 QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 88 (90)
T ss_dssp TBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred CCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence 46788775 256666 999999999999999999999999999999999999999888899999988753
No 147
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.38 E-value=2.9e-12 Score=85.80 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=60.4
Q ss_pred CCCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+.|||.+.. |.++. |.++|||+++||++||+|++|||.++.+++++++.++++..+..+.|.+.|+.
T Consensus 10 ~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 85 (87)
T 2pa1_A 10 GPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT 85 (87)
T ss_dssp SSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred CCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence 34578888852 45555 99999999999999999999999999999999999999998888999998865
No 148
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.38 E-value=8e-12 Score=85.25 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=66.2
Q ss_pred EEEEEeeCCCccceEEeec-------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 18 KLFLCKDIHGKIGLRVAAI-------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~-------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
.+.+.+ ...+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++. .+..
T Consensus 7 ~v~l~~-~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~ 84 (97)
T 2iwn_A 7 DVELTK-NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQT 84 (97)
T ss_dssp EEEEEC-BTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSE
T ss_pred EEEEec-CCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence 344544 456799999875 4689999999999999999 99999999999999999988777777775 6789
Q ss_pred EEEEEecCC
Q psy2263 90 ISIVVRDRP 98 (232)
Q Consensus 90 v~l~v~r~~ 98 (232)
+.|++.|++
T Consensus 85 v~l~v~r~g 93 (97)
T 2iwn_A 85 VLLTLMRRG 93 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEeCC
Confidence 999998754
No 149
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.38 E-value=8.2e-12 Score=84.34 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=63.5
Q ss_pred ceEEEEEEeeCC--CccceEEeec----CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 15 QMTKLFLCKDIH--GKIGLRVAAI----HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 15 ~~~~~~l~~~~~--~~lGi~~~~~----~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
..+.+++.|... .++||++... ..+++|..|.++|||+++||+.||+|++|||+++.+++..++...+.. .
T Consensus 6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~---~ 82 (94)
T 3kzd_A 6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---P 82 (94)
T ss_dssp EEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS---S
T ss_pred ceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---C
Confidence 457788888654 4799999863 257999999999999999999999999999999999988888888863 5
Q ss_pred eEEEEEec
Q psy2263 89 NISIVVRD 96 (232)
Q Consensus 89 ~v~l~v~r 96 (232)
.+.++++.
T Consensus 83 ~l~ltV~~ 90 (94)
T 3kzd_A 83 SLGLLVRT 90 (94)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 67777654
No 150
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.38 E-value=4e-12 Score=92.17 Aligned_cols=84 Identities=25% Similarity=0.282 Sum_probs=70.7
Q ss_pred EeeCCCccceEEeec-----------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 22 CKDIHGKIGLRVAAI-----------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 22 ~~~~~~~lGi~~~~~-----------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
.+..++|||+.+... ..+++|..|.++|||+ +||+.||+|++|||.++.++ .++...+..
T Consensus 24 G~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~ 100 (134)
T 2l97_A 24 GKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYN 100 (134)
T ss_dssp CCSSCCCCCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHH
T ss_pred CCEeeeEeeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence 456789999998652 3679999999999999 99999999999999999987 457677766
Q ss_pred C-CCCeEEEEEecCCceeeeEeecC
Q psy2263 85 C-PVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 85 ~-~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
. +++.+.+++.|+++..++.+...
T Consensus 101 ~~~g~~v~l~v~R~g~~~~~~v~~~ 125 (134)
T 2l97_A 101 HSIGDTIKITYYRNGKEETTSIKLN 125 (134)
T ss_dssp SSTTCEEEEEEEETTEEEEEEEECC
T ss_pred CCCCCEEEEEEEECCEEEEEEEEEc
Confidence 5 58999999999998888777654
No 151
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=9.3e-12 Score=89.53 Aligned_cols=94 Identities=26% Similarity=0.334 Sum_probs=75.6
Q ss_pred ceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
..+.+.+...+...||+.+... ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++. +..+.
T Consensus 20 ~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~ 97 (128)
T 1uf1_A 20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLI 97 (128)
T ss_dssp SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEE
T ss_pred cEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEE
Confidence 4456666655557799999773 248999999999999999999999999999999999987667777754 57899
Q ss_pred EEEecCCceeeeEeecCCC
Q psy2263 92 IVVRDRPFERNVTLHKDSA 110 (232)
Q Consensus 92 l~v~r~~~~~~v~l~~~~~ 110 (232)
|++.|++...++.+.....
T Consensus 98 l~v~R~g~~~~~~v~~~~~ 116 (128)
T 1uf1_A 98 LTVKDVGRLPHARTTVDET 116 (128)
T ss_dssp EEEECCSCCSSCSCCCCSS
T ss_pred EEEEECCcccccccccccc
Confidence 9999988877766655443
No 152
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.37 E-value=2.9e-12 Score=86.56 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
..++||.+.. |.++. |.++|||+++||++||+|++|||.++.++++.++..+++..+..+.|.+.|+...
T Consensus 12 ~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~ 88 (91)
T 2pkt_A 12 PGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE 88 (91)
T ss_dssp SSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECCC
T ss_pred CCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence 3568888853 44555 9999999999999999999999999999998999999999888999999887643
No 153
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.37 E-value=6.7e-12 Score=94.53 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=69.5
Q ss_pred ceEEEEEEeeCCCccceEEee---------cCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAA---------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~---------~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
....+.+.+.. .+|||++.. ...+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++.
T Consensus 80 ~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~ 158 (170)
T 3egg_C 80 ELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158 (170)
T ss_dssp EEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH
T ss_pred eEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 34556777776 469999987 23679999999999999999 99999999999999999999889999987
Q ss_pred CCCCeEEEEEecC
Q psy2263 85 CPVNNISIVVRDR 97 (232)
Q Consensus 85 ~~~~~v~l~v~r~ 97 (232)
.+..+.|++.|+
T Consensus 159 -~g~~v~L~V~R~ 170 (170)
T 3egg_C 159 -TKGRVRFMIGRE 170 (170)
T ss_dssp -CCSEEEEEEEEC
T ss_pred -CCCEEEEEEEeC
Confidence 568999999873
No 154
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.37 E-value=7.6e-12 Score=89.49 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=72.3
Q ss_pred cceEEEEEEeeCCCccceEEeec----CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI----HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~----~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
..++.+.+.+. ..+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.. +.
T Consensus 24 ~~~~~v~l~k~-~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~ 101 (124)
T 2daz_A 24 GELHIIELEKD-KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PS 101 (124)
T ss_dssp SEEEEEEEECC-SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CS
T ss_pred CceEEEEEEeC-CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence 34577888887 45699999874 2589999999999999999 999999999999999998887888788765 56
Q ss_pred eEEEEEecCCcee
Q psy2263 89 NISIVVRDRPFER 101 (232)
Q Consensus 89 ~v~l~v~r~~~~~ 101 (232)
.+.|++.|++...
T Consensus 102 ~v~l~v~R~~~~~ 114 (124)
T 2daz_A 102 KVKLVFIRNEDAV 114 (124)
T ss_dssp EEEEEEEECTTHH
T ss_pred eEEEEEEeCCCcc
Confidence 8999999876553
No 155
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=2.1e-12 Score=89.05 Aligned_cols=84 Identities=29% Similarity=0.401 Sum_probs=67.9
Q ss_pred cceEEEEEEe-eCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 14 HQMTKLFLCK-DIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 14 ~~~~~~~l~~-~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
..++.+.+.+ ....+|||.+... ..+++|..|.+++||+++||+.||+|++|||+++.++++..+...++ .+..
T Consensus 7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~ 84 (101)
T 1uez_A 7 GEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKK 84 (101)
T ss_dssp CCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSS
T ss_pred CccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCe
Confidence 4567777766 3567899999875 46899999999999999999999999999999999998755444443 3567
Q ss_pred EEEEEecCCc
Q psy2263 90 ISIVVRDRPF 99 (232)
Q Consensus 90 v~l~v~r~~~ 99 (232)
+.|++.|+++
T Consensus 85 v~l~v~R~g~ 94 (101)
T 1uez_A 85 LVLSVYSAGR 94 (101)
T ss_dssp CCEEECCCCC
T ss_pred EEEEEEECCc
Confidence 8888887654
No 156
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.37 E-value=5.3e-12 Score=89.49 Aligned_cols=89 Identities=28% Similarity=0.336 Sum_probs=72.4
Q ss_pred CcccccccceEEEEEEeeCCCccceEEeecC----CceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 7 SLEDMKYHQMTKLFLCKDIHGKIGLRVAAIH----EGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~lGi~~~~~~----~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
+.+++....++.+.+.+. ++|||++.... ..++|..|.++|||+++ ||++||+|++|||.++.++++.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~--~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~ 87 (118)
T 1v6b_A 10 SPEQIAGKDVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAA 87 (118)
T ss_dssp CHHHHSSCCEEEEEEESC--SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHH
T ss_pred cccccCCceEEEEEECCC--CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 455555566777777665 46999997632 34899999999999999 899999999999999999988888888
Q ss_pred HhhC---CCCeEEEEEecC
Q psy2263 82 LRNC---PVNNISIVVRDR 97 (232)
Q Consensus 82 l~~~---~~~~v~l~v~r~ 97 (232)
++.. .++.+.|++.|.
T Consensus 88 l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 88 LQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp HHHHHHHTCSEEEEEEECC
T ss_pred HHHhhhcCCCeEEEEEEeC
Confidence 8653 378999999883
No 157
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.37 E-value=4.8e-12 Score=88.10 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=53.3
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
|..|.++|||+++||++||+|++|||.++.+++++++..+++..+..+.|++.|....
T Consensus 47 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 104 (107)
T 3qe1_A 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104 (107)
T ss_dssp EEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEECSSCC
T ss_pred EEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCCC
Confidence 4449999999999999999999999999999999999999999889999999987653
No 158
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.36 E-value=7.1e-12 Score=84.72 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=61.4
Q ss_pred cccCCCccceEEecCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 154 KNDSAGHVGFQFKRGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 154 ~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.......+||.+..|.++. |.++|||+++| |++||+|++|||.++.+++++++.++++..+..+.|.+.|+...
T Consensus 10 ~~~~~~~~g~~~~~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~ 85 (92)
T 3cyy_A 10 KSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85 (92)
T ss_dssp CSSTTSCCCEEEEEEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC----
T ss_pred eCCCCCCCCEEEeCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCce
Confidence 3345567888877777666 99999999999 99999999999999998888999999998778899999887643
No 159
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.36 E-value=8.4e-13 Score=92.63 Aligned_cols=83 Identities=25% Similarity=0.403 Sum_probs=71.8
Q ss_pred ceEEEEEEeeCCCccceEEeecC------------CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIH------------EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHAL 81 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~------------~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~ 81 (232)
..+.+.+.+.+++.|||++.... .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+
T Consensus 9 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~ 88 (111)
T 1uju_A 9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL 88 (111)
T ss_dssp SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred ccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35678888988889999998643 478999999999999999 99999999999999999888888888
Q ss_pred HhhCCCCeEEEEEecCC
Q psy2263 82 LRNCPVNNISIVVRDRP 98 (232)
Q Consensus 82 l~~~~~~~v~l~v~r~~ 98 (232)
++. .+..+.|++.|..
T Consensus 89 l~~-~g~~v~l~v~r~~ 104 (111)
T 1uju_A 89 LRS-VGDTLTVLVCDGF 104 (111)
T ss_dssp HSS-CSSEEEECCCCCC
T ss_pred HHc-CCCeEEEEEEECC
Confidence 875 5788999888754
No 160
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.36 E-value=7.8e-12 Score=85.25 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=60.4
Q ss_pred CCccceEEec---------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR---------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~---------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+.. |.++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 15 ~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94 (96)
T ss_dssp SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCSC
T ss_pred CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence 3577888863 56666 99999999999 9999999999999999999999999999888899999988653
No 161
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.36 E-value=7.4e-12 Score=83.38 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=60.8
Q ss_pred CCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCC
Q psy2263 26 HGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98 (232)
Q Consensus 26 ~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 98 (232)
.++|||.+... ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +..+.+++.|++
T Consensus 10 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 84 (85)
T 1rgw_A 10 PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSK 84 (85)
T ss_dssp SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred CCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 35799999753 3578999999999999999999999999999999999887777777643 567899988754
No 162
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.36 E-value=3e-12 Score=91.02 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=60.0
Q ss_pred CccceEEec---------CcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 159 GHVGFQFKR---------GQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 159 ~~~g~~~~~---------g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
..|||.+.+ ++++. |.++|||+++ ||++||+|++|||.++.++++.+++.+++..+..+.|+|.|+...
T Consensus 36 ~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~ 115 (120)
T 2iwo_A 36 DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDV 115 (120)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTTS
T ss_pred CCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence 467777753 45566 9999999998 899999999999999999999999999999999999999987643
No 163
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.36 E-value=4.5e-12 Score=85.62 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=58.7
Q ss_pred CccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .+.++. |.++|||+++||++||+|++|||.++.++++.++..+++..+..+.|.+.|...
T Consensus 14 ~g~G~~l~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 84 (91)
T 2f5y_A 14 DGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVP 84 (91)
T ss_dssp TBTSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC-
T ss_pred CCccEEEecCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 45777775 456666 999999999999999999999999999999999999999888889999987653
No 164
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.36 E-value=2.5e-12 Score=86.53 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=59.1
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
...+||.+.+ +.++. |.++|||+++||++||+|++|||+++.++++.++..+++..+..+.|.+.|+.
T Consensus 12 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 86 (89)
T 2q3g_A 12 PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAI 86 (89)
T ss_dssp SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEEC
T ss_pred CCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 3568888853 35555 99999999999999999999999999999999999999988888999998764
No 165
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.36 E-value=3.5e-12 Score=85.63 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=59.4
Q ss_pred CCccceEEec----CcEEE-EccCChhhh-CCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR----GQIIR-LVKESSASR-NGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~----g~v~~-v~~~s~a~~-~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+.. +.++. |.++|||++ +||++||+|++|||+++.+++++++.++|+..+..+.|.+.|...
T Consensus 12 ~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 86 (88)
T 1kwa_A 12 DEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR 86 (88)
T ss_dssp SSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred CCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence 3567888853 45666 999999999 889999999999999999999999999999887789999988654
No 166
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.36 E-value=2.9e-12 Score=85.40 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=58.3
Q ss_pred CccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..|||.+.+ +.++. |.++|||+++||++||+|++|||.++.++++.++..+++..+..+.|.+.|+.
T Consensus 11 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred CccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 567888853 44555 99999999999999999999999999999999999999887788999998764
No 167
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.36 E-value=7.4e-12 Score=84.30 Aligned_cols=67 Identities=15% Similarity=0.347 Sum_probs=57.0
Q ss_pred CCCccceEEec----CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCC--CeEEEEEeC
Q psy2263 157 SAGHVGFQFKR----GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAP--CVINLTIMP 223 (232)
Q Consensus 157 ~~~~~g~~~~~----g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~--~~~~l~v~r 223 (232)
...++||++.. .+|++ +.++++|++.| |++||.|++|||+++.+++|.|++++|++.+ ..++|++.+
T Consensus 14 ~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 14 SEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp CSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 34678998863 25666 99999999998 9999999999999999999999999999954 478887763
No 168
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.36 E-value=4.2e-12 Score=87.81 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=67.3
Q ss_pred eEEEEEEeeCCCccceEEeecC----CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC----C
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAIH----EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC----P 86 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~~----~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~----~ 86 (232)
.+.+.+.+. ..+|||++.... ..++|..|.+++||+++| |++||+|++|||.++.+++++++..+++.. .
T Consensus 7 ~~~v~l~k~-~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~ 85 (103)
T 1ufx_A 7 GTLVRVKKS-AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD 85 (103)
T ss_dssp SEEEEEECC-SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred eEEEEEEcC-CCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCC
Confidence 466777665 466999998743 235999999999999999 999999999999999998888999988874 4
Q ss_pred CCeEEEEEecC
Q psy2263 87 VNNISIVVRDR 97 (232)
Q Consensus 87 ~~~v~l~v~r~ 97 (232)
++.+.+.+.|.
T Consensus 86 ~~~i~l~v~r~ 96 (103)
T 1ufx_A 86 RDYIDFLVTEF 96 (103)
T ss_dssp CSEEEEEECCC
T ss_pred CCeEEEEEEEc
Confidence 67788888774
No 169
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.36 E-value=5.5e-12 Score=97.08 Aligned_cols=84 Identities=27% Similarity=0.447 Sum_probs=74.5
Q ss_pred cceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
..++.+.+.+.+.++||+++... ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++. +..+
T Consensus 83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v 160 (192)
T 3k1r_A 83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTV 160 (192)
T ss_dssp SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEE
T ss_pred CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeE
Confidence 45788999998788899999764 468999999999999999999999999999999999888888888875 7899
Q ss_pred EEEEecCCc
Q psy2263 91 SIVVRDRPF 99 (232)
Q Consensus 91 ~l~v~r~~~ 99 (232)
.|++.|.+.
T Consensus 161 ~l~v~r~g~ 169 (192)
T 3k1r_A 161 SIKVRHIGL 169 (192)
T ss_dssp EEEEEECCE
T ss_pred EEEEEECCc
Confidence 999998765
No 170
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.36 E-value=5.4e-12 Score=90.19 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=70.3
Q ss_pred ceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISI 92 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l 92 (232)
....+.+.+.. .+|||++.....+++|..|.+++||+++| |++||+|++|||.++.+.++.++..+++.. +++.+.|
T Consensus 27 ~~~~~~l~k~~-~glG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l 105 (126)
T 1wif_A 27 KVIQTKLTVGN-LGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI 105 (126)
T ss_dssp CEEEEEEECCT-TCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred ceEEEEEecCC-ceEeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEE
Confidence 44556666664 55999998777889999999999999999 999999999999999877778899999874 4889999
Q ss_pred EEecC
Q psy2263 93 VVRDR 97 (232)
Q Consensus 93 ~v~r~ 97 (232)
++.|+
T Consensus 106 ~V~R~ 110 (126)
T 1wif_A 106 KAYRG 110 (126)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 99987
No 171
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.35 E-value=4.4e-12 Score=87.52 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...+||.+.+ |+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+
T Consensus 14 ~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 93 (102)
T 2i1n_A 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 93 (102)
T ss_dssp TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence 4568888853 56666 99999999999 99999999999999999999999999999889999999886
Q ss_pred ccc
Q psy2263 225 YVY 227 (232)
Q Consensus 225 ~~~ 227 (232)
...
T Consensus 94 ~~~ 96 (102)
T 2i1n_A 94 QPP 96 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 172
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.35 E-value=4.9e-12 Score=87.80 Aligned_cols=70 Identities=14% Similarity=0.280 Sum_probs=60.7
Q ss_pred CccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+||.+.+ |+++. |.++|||+++| |++||+|++|||.++.++++.++...++..+..+.|.+.|+.
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 93 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPT 93 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence 467888852 56666 99999999999 999999999999999999999999999988889999999877
Q ss_pred ccc
Q psy2263 226 VYH 228 (232)
Q Consensus 226 ~~~ 228 (232)
...
T Consensus 94 ~~~ 96 (105)
T 2awx_A 94 SMY 96 (105)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 173
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=87.68 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=61.2
Q ss_pred cCCCccceEEec------CcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 156 DSAGHVGFQFKR------GQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 156 ~~~~~~g~~~~~------g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+.+||.+.+ ++++. |.++|||+++ ||++||+|++|||.++.++++++++.+++..++.+.|++.+....
T Consensus 18 ~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 97 (103)
T 2dc2_A 18 EDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALE 97 (103)
T ss_dssp CSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC--
T ss_pred CCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCc
Confidence 345678888863 45555 9999999995 999999999999999999999999999999999999999887755
Q ss_pred cc
Q psy2263 228 HH 229 (232)
Q Consensus 228 ~~ 229 (232)
++
T Consensus 98 ~~ 99 (103)
T 2dc2_A 98 HH 99 (103)
T ss_dssp --
T ss_pred ch
Confidence 44
No 174
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.35 E-value=6e-12 Score=85.47 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=59.0
Q ss_pred CCccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...+||.+.+ |.++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+
T Consensus 13 ~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~ 92 (94)
T 2fe5_A 13 PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP 92 (94)
T ss_dssp TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECC
T ss_pred CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcC
Confidence 3457887753 46666 99999999999 99999999999999999999999999998888999999876
Q ss_pred c
Q psy2263 225 Y 225 (232)
Q Consensus 225 ~ 225 (232)
.
T Consensus 93 g 93 (94)
T 2fe5_A 93 G 93 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.35 E-value=3e-12 Score=87.40 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=58.6
Q ss_pred CCccceEEe----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFK----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
...+|+.+. .|.++. |.++|||+++| |++||+|++|||+++.+++++++.++++..+..+.|++.+..
T Consensus 23 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~~ 96 (97)
T 2ejy_A 23 EEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96 (97)
T ss_dssp SSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECCC
T ss_pred CCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 346777775 356666 99999999999 999999999999999998889999999988888999988753
No 176
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.35 E-value=1.1e-11 Score=84.29 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=63.4
Q ss_pred EEEEEeeCCCccceEEeec-----------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 18 KLFLCKDIHGKIGLRVAAI-----------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~-----------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
.+.+.+. .+|||++... ..+++|..|.++|||++ ||++||+|++|||.++.++++.++...++. .
T Consensus 6 ~v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~ 81 (95)
T 1mfg_A 6 RVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-F 81 (95)
T ss_dssp EEEEECS--SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHH-C
T ss_pred EEEECCC--CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhc-C
Confidence 3444544 4799999863 25899999999999999 999999999999999999888777777774 4
Q ss_pred CCeEEEEEecCC
Q psy2263 87 VNNISIVVRDRP 98 (232)
Q Consensus 87 ~~~v~l~v~r~~ 98 (232)
+..+.|++.|+.
T Consensus 82 ~~~v~l~v~R~~ 93 (95)
T 1mfg_A 82 QNTVELIIVREV 93 (95)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEeCC
Confidence 788999998753
No 177
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-12 Score=85.43 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=66.1
Q ss_pred eEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
.+.+.+ +.+ .+|||.+..+ ..+++|..|.+++||+++||++||+|++|||+++.++++.++...++. .+..+.|
T Consensus 9 ~~~v~l-~~~-~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l 85 (94)
T 2eeg_A 9 PHSVTL-RGP-SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTL 85 (94)
T ss_dssp CEEEEE-CCS-SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEE
T ss_pred eEEEEE-eCC-CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 355556 333 5699999863 357899999999999999999999999999999999987677777765 5788999
Q ss_pred EEecCCc
Q psy2263 93 VVRDRPF 99 (232)
Q Consensus 93 ~v~r~~~ 99 (232)
++.|++.
T Consensus 86 ~v~R~g~ 92 (94)
T 2eeg_A 86 SVSSGPS 92 (94)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9988654
No 178
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.35 E-value=1.4e-11 Score=83.18 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=62.3
Q ss_pred EEEEEe-eCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 18 KLFLCK-DIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 18 ~~~l~~-~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
.+.+.+ .....+|+.+. .+++|..|.++|||+++| |+.||+|++|||.++.+++..++...+... +..+.+++.
T Consensus 5 ~v~~~~~~~~~~~g~~~~---~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~ 80 (92)
T 3cyy_A 5 KVTLVKSAKNEEYGLRLA---SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQ 80 (92)
T ss_dssp EEEEECSSTTSCCCEEEE---EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEe---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEE
Confidence 344433 44567898876 589999999999999999 999999999999999977777888888764 458999999
Q ss_pred cCCceeeeEe
Q psy2263 96 DRPFERNVTL 105 (232)
Q Consensus 96 r~~~~~~v~l 105 (232)
|++...++.+
T Consensus 81 r~g~~~~~~v 90 (92)
T 3cyy_A 81 RDERATLLNV 90 (92)
T ss_dssp C---------
T ss_pred eCCceeeeeC
Confidence 9877666554
No 179
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=1.9e-12 Score=88.08 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=61.1
Q ss_pred CCCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
....|||.+.. |.++. |.++|||+++||++||+|++|||.++.+++++++.++++..+..+.|.+.|+...
T Consensus 14 ~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 14 GPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91 (94)
T ss_dssp SSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred CCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcC
Confidence 34567777753 45666 9999999999999999999999999999999999999998888899999988653
No 180
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.35 E-value=5.9e-12 Score=88.67 Aligned_cols=90 Identities=26% Similarity=0.377 Sum_probs=73.6
Q ss_pred eEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
.+.+.+.+....+||+++... ..+++|..|.+++||+++||+.||+|++|||.++.++++.++...++.. ..+.+
T Consensus 16 ~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l 93 (114)
T 1x5n_A 16 EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTI 93 (114)
T ss_dssp SEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEE
T ss_pred cEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEE
Confidence 477777676777899999863 3689999999999999999999999999999999999876677777653 67899
Q ss_pred EEecC-CceeeeEeec
Q psy2263 93 VVRDR-PFERNVTLHK 107 (232)
Q Consensus 93 ~v~r~-~~~~~v~l~~ 107 (232)
++.|+ +....+.+..
T Consensus 94 ~v~r~~g~~~~~~~~~ 109 (114)
T 1x5n_A 94 SIVAAAGRELFMTDRS 109 (114)
T ss_dssp EECSSTTTHHHHSSCC
T ss_pred EEEcCCCCceEEEecc
Confidence 99887 7665554443
No 181
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.34 E-value=7.5e-12 Score=83.76 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=57.4
Q ss_pred CCCccceEEecC------cEEE-EccCChhhh-CCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 157 SAGHVGFQFKRG------QIIR-LVKESSASR-NGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~g------~v~~-v~~~s~a~~-~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
....+||.+.++ +++. |.++|||++ +||++||+|++|||.++.+++++++..+++..+..+.|++.
T Consensus 12 ~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 85 (87)
T 4e34_A 12 DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 85 (87)
T ss_dssp TTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred CCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 345788888643 5666 999999999 79999999999999999999999999999998888888875
No 182
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.34 E-value=5.3e-12 Score=86.95 Aligned_cols=68 Identities=22% Similarity=0.410 Sum_probs=59.8
Q ss_pred CccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..|||.+.. |.++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+.
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 97 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 97 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEES
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence 568888854 55666 99999999999 999999999999999999999999999988888999998765
Q ss_pred c
Q psy2263 226 V 226 (232)
Q Consensus 226 ~ 226 (232)
.
T Consensus 98 ~ 98 (101)
T 2jik_A 98 E 98 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.34 E-value=5e-12 Score=91.30 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=60.6
Q ss_pred cCCCccceEEec---------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCC--CeEEEEEe
Q psy2263 156 DSAGHVGFQFKR---------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAP--CVINLTIM 222 (232)
Q Consensus 156 ~~~~~~g~~~~~---------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~--~~~~l~v~ 222 (232)
.....|||.+.+ |+++. |.+++||+++| |++||+|++|||+++.+++|+++.++|+... ..+.|+|.
T Consensus 45 ~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~ 124 (131)
T 1wfg_A 45 DSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVS 124 (131)
T ss_dssp CSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEE
T ss_pred CCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 345678888854 56666 99999999999 9999999999999999999999999999864 78999998
Q ss_pred CCc
Q psy2263 223 PSY 225 (232)
Q Consensus 223 r~~ 225 (232)
|+.
T Consensus 125 R~g 127 (131)
T 1wfg_A 125 RSG 127 (131)
T ss_dssp EEC
T ss_pred cCC
Confidence 754
No 184
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.5e-12 Score=89.17 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=70.6
Q ss_pred cccccceEEEEEEeeCCC--ccceEEeecC----CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 10 DMKYHQMTKLFLCKDIHG--KIGLRVAAIH----EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~--~lGi~~~~~~----~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
++....++.+.+.+.... .+||.+.... .+++|..|.++|||+++||++||+|++|||.++.++++.++..+++
T Consensus 10 e~~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~ 89 (114)
T 2d8i_A 10 EICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS 89 (114)
T ss_dssp CSSCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHT
T ss_pred EeccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence 334456788889887663 6899987532 5799999999999999999999999999999999987767777776
Q ss_pred hCCCCeEEEEEecCCc
Q psy2263 84 NCPVNNISIVVRDRPF 99 (232)
Q Consensus 84 ~~~~~~v~l~v~r~~~ 99 (232)
. ..+.|++.|.+.
T Consensus 90 ~---~~v~l~v~R~p~ 102 (114)
T 2d8i_A 90 Q---PSLGLLVRTYPE 102 (114)
T ss_dssp S---SEEEEEEEECCC
T ss_pred C---CcEEEEEEECCC
Confidence 3 488898888654
No 185
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=84.65 Aligned_cols=70 Identities=24% Similarity=0.392 Sum_probs=60.8
Q ss_pred CCccceEEe-------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFK-------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~-------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+||.+. .|+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+...
T Consensus 14 ~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 92 (98)
T 2opg_A 14 RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAP 92 (98)
T ss_dssp TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSC
T ss_pred CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCC
Confidence 456788885 256666 99999999999 99999999999999999999999999998888999999877643
No 186
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.34 E-value=5.5e-12 Score=86.34 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=59.8
Q ss_pred CCCccceEEec------------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 157 SAGHVGFQFKR------------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~------------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
....+||.+.. |.++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.
T Consensus 15 ~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~ 94 (98)
T 1ihj_A 15 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ 94 (98)
T ss_dssp TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEE
Confidence 34567887742 56666 99999999999 999999999999999999999999999998889999998
Q ss_pred CCc
Q psy2263 223 PSY 225 (232)
Q Consensus 223 r~~ 225 (232)
|+.
T Consensus 95 R~g 97 (98)
T 1ihj_A 95 TFD 97 (98)
T ss_dssp EC-
T ss_pred eCC
Confidence 864
No 187
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.34 E-value=1.9e-12 Score=87.46 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=56.0
Q ss_pred ccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 160 HVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 160 ~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
.+||.+. .|.++. |.++|||+++||++||+|++|||+++.+++++++.++++..+..+.|.+.|+...+
T Consensus 15 ~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 89 (91)
T 2vsp_A 15 GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQD 89 (91)
T ss_dssp BTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC-----
T ss_pred cccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCccc
Confidence 5677663 355555 99999999999999999999999999988999999999988889999999877644
No 188
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.34 E-value=6.7e-12 Score=84.56 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=59.1
Q ss_pred CCCccceEEec------CcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
....|||.+.. |.++. |.++|||+++ ||++||+|++|||+++.++++.++..+++..+..+.|.+.|-
T Consensus 14 ~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r~ 89 (90)
T 1qav_A 14 DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 89 (90)
T ss_dssp TTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred CCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence 34678888853 35555 9999999999 899999999999999999999999999999888999988763
No 189
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.34 E-value=7.3e-12 Score=85.91 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=59.6
Q ss_pred CCCccceEEec-------------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 157 SAGHVGFQFKR-------------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~-------------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
....+||.+.. |.++. |.++|||+++||++||+|++|||.++.+++++++..+++..+..+.|++.
T Consensus 11 ~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~ 90 (99)
T 3khf_A 11 SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTT 90 (99)
T ss_dssp -CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEE
Confidence 34567777742 23455 99999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q psy2263 223 PSYV 226 (232)
Q Consensus 223 r~~~ 226 (232)
|...
T Consensus 91 r~~~ 94 (99)
T 3khf_A 91 ALEN 94 (99)
T ss_dssp CSCS
T ss_pred ECCC
Confidence 8654
No 190
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.33 E-value=3.9e-12 Score=88.79 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=57.8
Q ss_pred CccceEEec--------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC---CCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR--------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA---PCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~--------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~---~~~~~l~v~r~~ 225 (232)
..+||.+.+ |+++. |.++|||+++| |++||+|++|||+++.+++|++++++|+.. +..+.|+|.|..
T Consensus 17 ~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG 96 (108)
T ss_dssp CCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCC
T ss_pred CccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCC
Confidence 456777643 45566 99999999999 999999999999999999999999999876 457999998875
Q ss_pred c
Q psy2263 226 V 226 (232)
Q Consensus 226 ~ 226 (232)
.
T Consensus 97 ~ 97 (108)
T 3cbz_A 97 G 97 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 191
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.33 E-value=5.7e-12 Score=86.09 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCccceEEec----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
...+||.+.. |.++. |.++|||+++| |++||+|++|||.++.+++++++.++++..+..+.|.+.|+.
T Consensus 13 ~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~ 92 (97)
T 2jil_A 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDV 92 (97)
T ss_dssp TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEEC
T ss_pred CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 4567888743 45555 99999999999 999999999999999999999999999998889999998865
Q ss_pred c
Q psy2263 226 V 226 (232)
Q Consensus 226 ~ 226 (232)
.
T Consensus 93 ~ 93 (97)
T 2jil_A 93 S 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 192
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.33 E-value=8.2e-12 Score=84.98 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=60.5
Q ss_pred CCccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+. .|+++. |.++|||+++| |++||+|++|||.++.++++.++...++..+..+.|.+.|+..
T Consensus 15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 15 GEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGK 90 (95)
T ss_dssp TCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESC
T ss_pred CCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCc
Confidence 356788874 357666 99999999999 9999999999999999999999999999888999999988654
No 193
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.33 E-value=5.4e-12 Score=85.87 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=59.8
Q ss_pred CCccceEEec-----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFKR-----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~~-----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+||.+.. ++++. |.++|||+++||++||+|++|||.++.+++|+++..+|+..+..+.+.+.|+...
T Consensus 15 ~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 15 SNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90 (95)
T ss_dssp TTBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC--
T ss_pred CCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCccc
Confidence 3567887752 56677 9999999999999999999999999999999999999999888888888776654
No 194
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.33 E-value=1.1e-11 Score=84.70 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=60.8
Q ss_pred CCccceEEe------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFK------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.+.+||.+. .+.++. |.++|||+++| |++||+|++|||.++.+++++++..+++..+..+.|.+.|+...
T Consensus 15 ~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 15 GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA 92 (97)
T ss_dssp TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCC
T ss_pred CCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence 456888885 246666 99999999999 99999999999999999999999999998788899999887653
No 195
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=9e-12 Score=86.74 Aligned_cols=69 Identities=23% Similarity=0.432 Sum_probs=60.0
Q ss_pred CCccceEEe--------------cCcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEE
Q psy2263 158 AGHVGFQFK--------------RGQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221 (232)
Q Consensus 158 ~~~~g~~~~--------------~g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v 221 (232)
...|||.+. .|+++. |.++|||+++ ||++||+|++|||+++.++++.+++.+++..+..+.|.+
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 97 (107)
T 1uhp_A 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97 (107)
T ss_dssp SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence 456777774 256666 9999999999 899999999999999999999999999999888999999
Q ss_pred eCCcc
Q psy2263 222 MPSYV 226 (232)
Q Consensus 222 ~r~~~ 226 (232)
.|+..
T Consensus 98 ~R~~~ 102 (107)
T 1uhp_A 98 LRRTS 102 (107)
T ss_dssp EECCS
T ss_pred EeCCC
Confidence 87653
No 196
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.33 E-value=1e-11 Score=82.69 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=55.6
Q ss_pred CccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeC
Q psy2263 159 GHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMP 223 (232)
Q Consensus 159 ~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r 223 (232)
..+||.+.. +.++. |.++|||+++| |++||+|++|||.++.+++++++.++++.. +..+.|.+.|
T Consensus 11 ~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 11 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 457777754 35565 99999999999 999999999999999999999999999986 6788888865
No 197
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=6.1e-12 Score=89.02 Aligned_cols=68 Identities=24% Similarity=0.438 Sum_probs=59.9
Q ss_pred CccceEEec---------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR---------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~---------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+.+ |.++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+..
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~ 114 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSC
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 568888853 45666 99999999999 9999999999999999999999999999888889999988764
No 198
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=8e-12 Score=86.21 Aligned_cols=68 Identities=26% Similarity=0.451 Sum_probs=59.9
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .|.++. |.++|||+++||++||+|++|||+++.+++++++..+++..+..+.|.+.|+..
T Consensus 17 ~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 17 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEA 90 (102)
T ss_dssp SSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTC
T ss_pred CCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 46788775 357777 999999999999999999999999999999999999999888899999987654
No 199
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.33 E-value=1.7e-11 Score=83.39 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=63.3
Q ss_pred EEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC--CCCeEEEEEec
Q psy2263 19 LFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC--PVNNISIVVRD 96 (232)
Q Consensus 19 ~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~~v~l~v~r 96 (232)
+.+.+ ...++||.+.....+.+|..|.++|||++|||++||+|++|||.++...+.+++.+.++.. .+.++.|.+..
T Consensus 21 l~l~~-~~~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 21 LLILP-QEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp EEECC-CSSSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEe-CCCcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 34444 3566999999877889999999999999999999999999999998645557788888763 57888888764
No 200
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=5.9e-12 Score=89.14 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=59.3
Q ss_pred CccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+||.+.+ |+++. |.++|||+++| |++||+|++|||+++.++++++++.+++..+..+.|.|.|+.
T Consensus 35 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~ 114 (117)
T 2byg_A 35 KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114 (117)
T ss_dssp TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 467777753 46666 99999999999 999999999999999999999999999998889999998865
No 201
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=84.17 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=59.9
Q ss_pred CCccceEEe------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFK------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+. .+.++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 15 ~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 91 (93)
T 2dkr_A 15 DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPS 91 (93)
T ss_dssp TTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCCS
T ss_pred CCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCCC
Confidence 456788885 356666 99999999996 9999999999999999999999999999888889999988653
No 202
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.33 E-value=3.8e-12 Score=85.78 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=57.4
Q ss_pred CccceEEecC------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC--eEEEEEeCCc
Q psy2263 159 GHVGFQFKRG------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPC--VINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~g------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~--~~~l~v~r~~ 225 (232)
..+||.+..| .++. |.++|||+++| |++||+|++|||.++.+.++.++..+++..+. .+.|.+.|..
T Consensus 13 ~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 13 TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 4578888643 5555 99999999999 99999999999999999999999999988643 8999998753
No 203
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=2.6e-12 Score=88.77 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=67.2
Q ss_pred EEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 17 TKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 17 ~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
..+.+.+.. .+|||++.... .+++|..|.++|||+++| |+.||+|++|||.++.++++.++...++ ..+..+.|
T Consensus 13 ~~v~l~~~~-~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l 90 (103)
T 1wfv_A 13 FTVDMEKGA-KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRL 90 (103)
T ss_dssp EECCEECCT-TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECE
T ss_pred EEEEEecCC-CcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEE
Confidence 345555654 45999998654 389999999999999999 9999999999999999998877777777 34788999
Q ss_pred EEecCCce
Q psy2263 93 VVRDRPFE 100 (232)
Q Consensus 93 ~v~r~~~~ 100 (232)
++.|++..
T Consensus 91 ~v~R~~~~ 98 (103)
T 1wfv_A 91 LLKRGTGS 98 (103)
T ss_dssp EEECTTCS
T ss_pred EEEECCCC
Confidence 99886653
No 204
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.32 E-value=8.3e-12 Score=84.64 Aligned_cols=68 Identities=25% Similarity=0.422 Sum_probs=58.8
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .+.++. |.++|||+++| |++||+|++|||.++.+.+++++..+|+..+..+.|.+.|...
T Consensus 15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 89 (93)
T 3o46_A 15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK 89 (93)
T ss_dssp SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 46788875 345666 99999999999 9999999999999999999999999999988899999987654
No 205
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=7.4e-12 Score=88.68 Aligned_cols=88 Identities=19% Similarity=0.299 Sum_probs=69.9
Q ss_pred EEEEEEe---eCCCccceEEeec------CCceEEEEecC--CCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 17 TKLFLCK---DIHGKIGLRVAAI------HEGVFVCLVQE--GSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 17 ~~~~l~~---~~~~~lGi~~~~~------~~g~~V~~V~~--~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
+.+++.+ ...+.+||.+... ..+++|..|.+ ++||+++||+.||+|++|||.++.++++.++...+...
T Consensus 14 ~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~ 93 (118)
T 2yub_A 14 YSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT 93 (118)
T ss_dssp CEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred ceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence 4455544 4445567766532 26899999999 99999999999999999999999999777788888866
Q ss_pred CCCeEEEEEecCCceeeeEe
Q psy2263 86 PVNNISIVVRDRPFERNVTL 105 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v~l 105 (232)
+..+.|++.|+++..++.+
T Consensus 94 -g~~v~l~v~R~g~~~~~~~ 112 (118)
T 2yub_A 94 -SQTLQLLIEHDPVPQRLDQ 112 (118)
T ss_dssp -SSCEEEEEEECSSCCCCCS
T ss_pred -CCEEEEEEEECCEEEeeec
Confidence 7899999999887665543
No 206
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.32 E-value=9.4e-12 Score=86.48 Aligned_cols=70 Identities=23% Similarity=0.478 Sum_probs=60.9
Q ss_pred CCccceEEec---------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR---------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~---------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+.. |+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+..
T Consensus 20 ~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 99 (106)
T ss_dssp SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCS
T ss_pred CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 4567887742 46666 99999999999 9999999999999999999999999999988999999998764
Q ss_pred c
Q psy2263 227 Y 227 (232)
Q Consensus 227 ~ 227 (232)
.
T Consensus 100 ~ 100 (106)
T 3axa_A 100 I 100 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 207
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.32 E-value=9.6e-12 Score=86.57 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=61.5
Q ss_pred cccccCCCccceEEec------CcEEE-EccCChhhhCC--CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC----eEE
Q psy2263 152 GLKNDSAGHVGFQFKR------GQIIR-LVKESSASRNG--LLTDHHILEVNGQNVVGLKDKEIREIVEKAPC----VIN 218 (232)
Q Consensus 152 ~~~~~~~~~~g~~~~~------g~v~~-v~~~s~a~~~G--l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~----~~~ 218 (232)
.+.....+.|||.+.+ ++++. |.++|||+++| |++||+|++|||.++.+++|.++..+++..+. .+.
T Consensus 22 ~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~ 101 (107)
T 3nfk_A 22 RMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101 (107)
T ss_dssp EECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEE
T ss_pred EEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEE
Confidence 3444455788998854 35666 99999999999 99999999999999999999999999998765 899
Q ss_pred EEEeCC
Q psy2263 219 LTIMPS 224 (232)
Q Consensus 219 l~v~r~ 224 (232)
|++.|+
T Consensus 102 l~v~r~ 107 (107)
T 3nfk_A 102 LLVRPN 107 (107)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998874
No 208
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=5.5e-12 Score=87.99 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=60.6
Q ss_pred CccceEEe--------------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 159 GHVGFQFK--------------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 159 ~~~g~~~~--------------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
..+||.+. .|+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~ 99 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 99 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 56777776 356555 99999999999 999999999999999999999999999998899999999
Q ss_pred CCccc
Q psy2263 223 PSYVY 227 (232)
Q Consensus 223 r~~~~ 227 (232)
|+...
T Consensus 100 R~~~~ 104 (108)
T 1q7x_A 100 KGQSP 104 (108)
T ss_dssp CCCCS
T ss_pred eCCcc
Confidence 87653
No 209
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=85.14 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=57.2
Q ss_pred CccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+||.+. .+.++. |.++|||+++||++||+|++|||.++.+++++++..+++..+..+.|.+.|+.
T Consensus 13 ~g~G~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 82 (83)
T 2kv8_A 13 AGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV 82 (83)
T ss_dssp SCCSCBCCCSSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred CcccEEEEcCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence 34566554 355555 99999999999999999999999999999999999999887788999998864
No 210
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=9.2e-12 Score=88.12 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=61.1
Q ss_pred CCccceEEec------C-cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFKR------G-QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~~------g-~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+||.+.. + +++. |.+++||+++| |++||+|++|||+++.+.+++++.++|+..+..+.|.+.|....
T Consensus 26 ~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 104 (117)
T 1v62_A 26 GSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQS 104 (117)
T ss_dssp TCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTB
T ss_pred CCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCC
Confidence 4567887753 3 6666 99999999999 99999999999999999999999999998888999999987653
No 211
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.32 E-value=9.4e-13 Score=91.14 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=67.3
Q ss_pred CCCccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCcee
Q psy2263 25 IHGKIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFER 101 (232)
Q Consensus 25 ~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~ 101 (232)
...+|||.+.... .+++|..|.++|||+++||++||+|++|||.++.+++..++..+++.. +..+.|++.|+++..
T Consensus 13 ~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~ 91 (103)
T 1v5l_A 13 GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETRL 91 (103)
T ss_dssp SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred CCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence 4567999997653 478999999999999999999999999999999997778888888866 899999999987765
Q ss_pred ee
Q psy2263 102 NV 103 (232)
Q Consensus 102 ~v 103 (232)
..
T Consensus 92 ~~ 93 (103)
T 1v5l_A 92 WS 93 (103)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 212
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.31 E-value=1.2e-11 Score=83.47 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=57.9
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
..+||.+. .|+++. |.++|||+++||++||+|++|||+++.++++.++..+++..+..+.|.+.|+
T Consensus 19 ~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 19 EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90 (91)
T ss_dssp SSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred CCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 45788875 356666 9999999999999999999999999999999999999998888999999875
No 213
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1e-11 Score=85.34 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=67.3
Q ss_pred ceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAALV-GLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~a-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v 90 (232)
..+.+.+......+|||++... ..+++|..|.++|||+++ ||++||+|++|||.++.++ +.++...++.. +..+
T Consensus 9 ~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~-~~~v 86 (100)
T 2edp_A 9 SFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGS-FRIL 86 (100)
T ss_dssp CCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTC-CSSC
T ss_pred CcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhC-CCeE
Confidence 3456666655556899999763 246899999999999999 8999999999999999986 44677777754 6889
Q ss_pred EEEEecCCce
Q psy2263 91 SIVVRDRPFE 100 (232)
Q Consensus 91 ~l~v~r~~~~ 100 (232)
.|++.|++..
T Consensus 87 ~l~v~R~~~~ 96 (100)
T 2edp_A 87 KLIVRRRNSG 96 (100)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999987654
No 214
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=6.8e-12 Score=88.83 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=60.6
Q ss_pred CCccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...|||.+.+ |+++. |.++|||+++| |++||+|++|||.++.+++|.+++.+++..+..+.|++.|+
T Consensus 29 ~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 108 (117)
T 1ujd_A 29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108 (117)
T ss_dssp CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred CCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 3567887742 45666 99999999999 99999999999999999999999999999888999999987
Q ss_pred cc
Q psy2263 225 YV 226 (232)
Q Consensus 225 ~~ 226 (232)
..
T Consensus 109 ~~ 110 (117)
T 1ujd_A 109 LN 110 (117)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 215
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=6.9e-12 Score=87.34 Aligned_cols=68 Identities=18% Similarity=0.375 Sum_probs=59.9
Q ss_pred CccceEEec------------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 159 GHVGFQFKR------------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~~------------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
..|||.+.. |+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+
T Consensus 20 ~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~ 99 (107)
T 1wf8_A 20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99 (107)
T ss_dssp TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEE
T ss_pred CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeC
Confidence 457777754 46666 99999999999 99999999999999999999999999999889999999886
Q ss_pred cc
Q psy2263 225 YV 226 (232)
Q Consensus 225 ~~ 226 (232)
..
T Consensus 100 ~~ 101 (107)
T 1wf8_A 100 KP 101 (107)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 216
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.31 E-value=3.2e-11 Score=80.85 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=63.6
Q ss_pred EEEEe-eCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEec
Q psy2263 19 LFLCK-DIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 19 ~~l~~-~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r 96 (232)
+.+.+ .+.+.+|+.+.. +++|..|.++|||+++| |+.||+|++|||.++.+.++.++..+++.. +..+.|++.+
T Consensus 4 v~l~~~~~~~~~G~~~~~---gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~-~~~v~L~v~~ 79 (88)
T 3e17_A 4 VLLMKSRANEEYGLRLGS---QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLR 79 (88)
T ss_dssp EEEECBTTBCCCCEEEEE---EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEECC
T ss_pred EEEEeCCCCCCCCEEEeC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEeC
Confidence 44544 455679999864 89999999999999999 999999999999999988888899999875 4688888876
Q ss_pred CC
Q psy2263 97 RP 98 (232)
Q Consensus 97 ~~ 98 (232)
..
T Consensus 80 ~~ 81 (88)
T 3e17_A 80 DL 81 (88)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 217
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.31 E-value=1.1e-11 Score=85.78 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=59.7
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.+.+||.+.. |.++. |.++|||+++||++||+|++|||.++.+++++++.++++. +..+.|.+.|...
T Consensus 26 ~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 26 GAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSG 100 (104)
T ss_dssp TCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCC
T ss_pred CCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCC
Confidence 3678888853 56666 9999999999999999999999999999999999999998 7889999988654
No 218
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=93.34 Aligned_cols=84 Identities=31% Similarity=0.479 Sum_probs=71.1
Q ss_pred cceEEEEEEeeCCCccceEEeec-------------------------------CCceEEEEecCCCHHhhcCCCCCCEE
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI-------------------------------HEGVFVCLVQEGSPAALVGLRFGDQI 62 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~-------------------------------~~g~~V~~V~~~s~A~~agL~~GD~I 62 (232)
..+|.+.|.|...+ |||++.+. ..+++|..|.++|||+++||++||+|
T Consensus 7 ~~~r~v~l~r~~~g-~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I 85 (126)
T 2yuy_A 7 GGPKTVTLKRTSQG-FGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRI 85 (126)
T ss_dssp SSCCCEEEECCSSS-CSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSSCCC
T ss_pred CCCEEEEEEECCCC-cceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCCCEE
Confidence 45678899888754 99998641 24589999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCc
Q psy2263 63 LQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 63 ~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 99 (232)
++|||.++.++++.++..+++.. +..+.|++.|++.
T Consensus 86 ~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 86 IKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp CEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred EEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence 99999999988888899988864 7899999988654
No 219
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.31 E-value=6.5e-12 Score=100.71 Aligned_cols=85 Identities=19% Similarity=0.265 Sum_probs=74.9
Q ss_pred cceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 14 HQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 14 ~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
..++.|.+.|...++|||++..+ ..+++|..|.+++||++ +||++||+|++|||+++.++++.++..+++.. +..
T Consensus 76 ~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~ 154 (263)
T 1z87_A 76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKE 154 (263)
T ss_dssp CSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSC
T ss_pred CccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCe
Confidence 35788999998888899999874 35899999999999999 79999999999999999999998899999875 678
Q ss_pred EEEEEecCCc
Q psy2263 90 ISIVVRDRPF 99 (232)
Q Consensus 90 v~l~v~r~~~ 99 (232)
+.|++.|..+
T Consensus 155 V~L~V~R~~~ 164 (263)
T 1z87_A 155 VVLEVKYMKE 164 (263)
T ss_dssp CCEEEECCSS
T ss_pred EEEEEEeCcc
Confidence 9999998544
No 220
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.31 E-value=6.1e-12 Score=88.64 Aligned_cols=73 Identities=26% Similarity=0.475 Sum_probs=62.9
Q ss_pred ccCCCccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 155 NDSAGHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 155 ~~~~~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
......+||.+. .|.++. |.++|||+++||++||+|++|||+++.+.++.++..+++..+..+.|.+.|+..+
T Consensus 21 ~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 99 (114)
T 2edz_A 21 KQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY 99 (114)
T ss_dssp CCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECHHHH
T ss_pred CCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCcc
Confidence 344566787774 467777 9999999999999999999999999999999999999998888999999987654
No 221
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.31 E-value=1.6e-11 Score=83.83 Aligned_cols=69 Identities=25% Similarity=0.421 Sum_probs=59.5
Q ss_pred CCccceEEe------------cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFK------------RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~------------~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
.+.+||.+. .|.++. |.++|||+++||++||+|++|||.++.++++.++...++..+..+.|.+.|+
T Consensus 13 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 92 (97)
T 2w4f_A 13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92 (97)
T ss_dssp TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECC
T ss_pred CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeC
Confidence 456777774 355665 9999999999999999999999999999988888888888888999999987
Q ss_pred cc
Q psy2263 225 YV 226 (232)
Q Consensus 225 ~~ 226 (232)
..
T Consensus 93 g~ 94 (97)
T 2w4f_A 93 RE 94 (97)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 222
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.31 E-value=1.5e-11 Score=84.98 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=65.0
Q ss_pred eEEEEEEeeCCCccceEEee-----------cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 16 MTKLFLCKDIHGKIGLRVAA-----------IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~-----------~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
...+.+.+. ++|||++.. ...+++|..|.++|||++ ||++||+|++|||.++.++++.++...++.
T Consensus 12 ~~~v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~ 88 (103)
T 1n7t_A 12 EIRVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT 88 (103)
T ss_dssp CEEEEEECS--SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred EEEEEEccC--CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhc
Confidence 344555555 479999987 345899999999999999 999999999999999999888777777774
Q ss_pred CCCCeEEEEEecC
Q psy2263 85 CPVNNISIVVRDR 97 (232)
Q Consensus 85 ~~~~~v~l~v~r~ 97 (232)
.+..+.|++.|+
T Consensus 89 -~g~~v~l~v~R~ 100 (103)
T 1n7t_A 89 -FQNTVELIIVRE 100 (103)
T ss_dssp -CCSEEEEEEECC
T ss_pred -CCCeEEEEEEec
Confidence 478899999875
No 223
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.31 E-value=1.6e-11 Score=83.48 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=52.0
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
|+++. |.++|||++ ||++||+|++|||.++.++++.++...++..+..+.|.+.|+.
T Consensus 36 gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 36 GIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 93 (95)
T ss_dssp CEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence 46566 999999999 9999999999999999999999999999988899999998764
No 224
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.30 E-value=9.3e-12 Score=86.78 Aligned_cols=70 Identities=21% Similarity=0.433 Sum_probs=60.1
Q ss_pred CCCccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeC
Q psy2263 157 SAGHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223 (232)
Q Consensus 157 ~~~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r 223 (232)
....+||.+.. |+++. |.++|||+++| |++||+|++|||.++.+++++++..+++..+..+.|.+.|
T Consensus 23 ~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R 102 (108)
T 2jre_A 23 DTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102 (108)
T ss_dssp TTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence 34567777742 66666 99999999999 9999999999999999999999999998878889999987
Q ss_pred Ccc
Q psy2263 224 SYV 226 (232)
Q Consensus 224 ~~~ 226 (232)
+..
T Consensus 103 ~~~ 105 (108)
T 2jre_A 103 RLP 105 (108)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 225
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=9.4e-12 Score=84.56 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=59.5
Q ss_pred CccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.+|||.+.+ +.++. |.+++||+++||++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 18 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 18 SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92 (94)
T ss_dssp SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 467888854 45666 999999999999999999999999999999999999999888889999988754
No 226
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=7.3e-12 Score=86.58 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=60.0
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~~ 227 (232)
...|||.+.. ++++. |.++|||+++| |++||+|++|||+++.+++++++.++|+.. +..+.|++.|+...
T Consensus 19 ~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 98 (103)
T 1uep_A 19 ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLS 98 (103)
T ss_dssp SSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCC
Confidence 3457887753 35555 99999999999 999999999999999999999999999886 68999999887654
No 227
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.30 E-value=1.7e-11 Score=85.67 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=52.4
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
|+++. |.++|||+++||++||+|++|||+++.+++|+++..+++..+..+.|.+.|..
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 104 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 45666 99999999999999999999999999999999999999988888999887654
No 228
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=1.6e-11 Score=84.79 Aligned_cols=60 Identities=25% Similarity=0.425 Sum_probs=53.3
Q ss_pred cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.|.++. |.++|||+++| |++||+|++|||.++.+++++++.++++..++.+.|.+.|...
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence 466666 99999999999 9999999999999999999999999999888899999988654
No 229
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=6.6e-12 Score=87.13 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=59.5
Q ss_pred CccceEEe------------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 159 GHVGFQFK------------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~------------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
..+||.+. .|+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+
T Consensus 18 ~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~ 97 (105)
T 1wha_A 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 97 (105)
T ss_dssp TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEEC
T ss_pred CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 45777775 256666 99999999999 99999999999999999999999999998888899999887
Q ss_pred cc
Q psy2263 225 YV 226 (232)
Q Consensus 225 ~~ 226 (232)
..
T Consensus 98 ~~ 99 (105)
T 1wha_A 98 AG 99 (105)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 230
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=1.6e-11 Score=86.52 Aligned_cols=70 Identities=26% Similarity=0.427 Sum_probs=60.5
Q ss_pred CCccceEEec-------------CcEEE-EccCChhhh-CCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 158 AGHVGFQFKR-------------GQIIR-LVKESSASR-NGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 158 ~~~~g~~~~~-------------g~v~~-v~~~s~a~~-~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
...|||.+.. +.++. |.++|||++ +||++||+|++|||+++.+++++++.++|+..+..+.|.+.
T Consensus 21 ~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~ 100 (114)
T 1uew_A 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRII 100 (114)
T ss_dssp TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEEC
T ss_pred CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 4567888843 22555 999999999 99999999999999999999999999999998889999999
Q ss_pred CCccc
Q psy2263 223 PSYVY 227 (232)
Q Consensus 223 r~~~~ 227 (232)
|+...
T Consensus 101 r~~~~ 105 (114)
T 1uew_A 101 PQEEL 105 (114)
T ss_dssp CCSCC
T ss_pred eCCcC
Confidence 87654
No 231
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=1.9e-11 Score=87.90 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=75.5
Q ss_pred CCCeEEEEEecCCceeeeEeecCCCCeeCeEEeCCeEEEEecCChhhhcCCCCCCEEEEECCeEeecccccCCCccceEE
Q psy2263 86 PVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQF 165 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v~l~~~~~~~lg~~~~~~~~~~~~~~~~a~~~gl~~gd~i~~v~g~~~~~~~~~~~~~~g~~~ 165 (232)
+++.+.+++.|++++.++.+.......+|+.+..+. . +
T Consensus 7 ~g~~v~l~v~R~g~~~~v~v~~~~~~~lG~~~~~~~-----------~-------------------------------~ 44 (128)
T 1uf1_A 7 GDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGA-----------E-------------------------------Y 44 (128)
T ss_dssp TTTSCCSCCCCCSSEEEEEEECCSSCCCCEEEECCT-----------T-------------------------------T
T ss_pred CCCEEEEEEEeCCcEEEEEEEECCCCccCEEEECcc-----------c-------------------------------C
Confidence 477788888888888888777654445666554310 0 0
Q ss_pred ecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 166 KRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 166 ~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
..|.++. |.++|||+++||++||+|++|||.++.++++.++++.++.. ..+.|.+.|+...
T Consensus 45 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 45 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRL 106 (128)
T ss_dssp TCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCSCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEECCcc
Confidence 0133555 99999999999999999999999999999988888888774 6899999887654
No 232
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.30 E-value=2.5e-11 Score=86.64 Aligned_cols=60 Identities=25% Similarity=0.425 Sum_probs=54.2
Q ss_pred cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.|+++. |.++|||+++| |++||+|++|||.++.+++++++.++|+..+..+.|.+.|...
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 356666 99999999999 9999999999999999999999999999988899999987653
No 233
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.29 E-value=9.3e-12 Score=87.46 Aligned_cols=85 Identities=34% Similarity=0.553 Sum_probs=72.2
Q ss_pred ccceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe
Q psy2263 13 YHQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89 (232)
Q Consensus 13 ~~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~ 89 (232)
...++.+.+.+.. .+|||++.... .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++. .+..
T Consensus 13 ~~~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~~ 90 (113)
T 1um7_A 13 AREPRKIILHKGS-TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQS 90 (113)
T ss_dssp CCSEEEEEEECCS-SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCSE
T ss_pred CCceEEEEEEECC-CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCc
Confidence 4567889998875 56999998754 789999999999999999 99999999999999999987777777764 5788
Q ss_pred EEEEEecCCc
Q psy2263 90 ISIVVRDRPF 99 (232)
Q Consensus 90 v~l~v~r~~~ 99 (232)
+.|++.|++.
T Consensus 91 v~l~v~r~~~ 100 (113)
T 1um7_A 91 VTIVAQYRPE 100 (113)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEEECcc
Confidence 9999988654
No 234
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.29 E-value=2.6e-11 Score=84.82 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=61.3
Q ss_pred CCCccceEEe------------cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeC
Q psy2263 157 SAGHVGFQFK------------RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223 (232)
Q Consensus 157 ~~~~~g~~~~------------~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r 223 (232)
..+.+||.+. .|.++. |.++|||+++||++||+|++|||+++.++++.++...++..+..+.|.+.|
T Consensus 24 ~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 103 (110)
T 1x5q_A 24 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103 (110)
T ss_dssp SSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEE
T ss_pred CCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEE
Confidence 3567788875 356666 999999999999999999999999999999999999888888899999998
Q ss_pred Cccc
Q psy2263 224 SYVY 227 (232)
Q Consensus 224 ~~~~ 227 (232)
+...
T Consensus 104 ~g~~ 107 (110)
T 1x5q_A 104 ESGP 107 (110)
T ss_dssp CSSC
T ss_pred CCcc
Confidence 7643
No 235
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.29 E-value=1.3e-11 Score=88.80 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=54.3
Q ss_pred CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
|+++. |.++|||+++| |++||+|++|||+++.+.+++++..+++..+..+.|.+.|...
T Consensus 66 gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 57666 99999999999 9999999999999999999999999999888899999988754
No 236
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=87.56 Aligned_cols=71 Identities=30% Similarity=0.516 Sum_probs=61.4
Q ss_pred CCccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 158 AGHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 158 ~~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
.+.+||.+. .|.++. |.++|||+++||++||+|++|||+++.++++.++..+++..+..+.|.+.|+..+.
T Consensus 18 ~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~ 94 (106)
T 2eei_A 18 GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK 94 (106)
T ss_dssp SSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTTSC
T ss_pred CCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCchhh
Confidence 456777773 367777 99999999999999999999999999999999999999888889999998876543
No 237
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.29 E-value=2.5e-11 Score=85.21 Aligned_cols=68 Identities=21% Similarity=0.382 Sum_probs=59.7
Q ss_pred CccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+.. |+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 35 ~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 110 (112)
T 2r4h_A 35 KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGET 110 (112)
T ss_dssp TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCEE
T ss_pred CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 458888753 45666 99999999999 9999999999999999999999999999888899999988754
No 238
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=86.13 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=61.1
Q ss_pred CCCccceEEe---------------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEE
Q psy2263 157 SAGHVGFQFK---------------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219 (232)
Q Consensus 157 ~~~~~g~~~~---------------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l 219 (232)
....|||.+. .|+++. |.++|||+++| |++||+|++|||+++.++++.+++.+++..+..+.|
T Consensus 25 ~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 104 (117)
T 2ehr_A 25 PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVF 104 (117)
T ss_dssp SSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEE
T ss_pred CCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3456777773 256666 99999999999 999999999999999999999999999998899999
Q ss_pred EEeCCccc
Q psy2263 220 TIMPSYVY 227 (232)
Q Consensus 220 ~v~r~~~~ 227 (232)
.+.|....
T Consensus 105 ~v~r~~~~ 112 (117)
T 2ehr_A 105 IVQSLSST 112 (117)
T ss_dssp EECCBSCC
T ss_pred EEEECCCC
Confidence 99876543
No 239
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.29 E-value=1.6e-11 Score=84.97 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCccceEEec-----CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR-----GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~-----g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
...+||.+.. |+++. |.++|||+++| |++||+|++|||.++.+.++.++...++..+..+.|.+.|+.
T Consensus 21 ~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 21 STGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95 (104)
T ss_dssp TTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred CCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECc
Confidence 3468888852 67666 99999999999 999999999999999999999999999998899999998874
No 240
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.29 E-value=4.9e-11 Score=78.47 Aligned_cols=74 Identities=24% Similarity=0.431 Sum_probs=61.4
Q ss_pred EEEeeCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecC
Q psy2263 20 FLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97 (232)
Q Consensus 20 ~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~ 97 (232)
.+.+.....+|+.+. .+++|..|.++|||+++| |++||+|++|||.++.+++..++..+++... ..+.+++.|+
T Consensus 6 ~~~~~~~~~~g~~~~---~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 80 (81)
T 2rcz_A 6 LVKSRKNEEYGLRLA---SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD 80 (81)
T ss_dssp EECCSTTCCCCEEEE---EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC-
T ss_pred EEECCCCCCCCEEEe---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeC
Confidence 344556677998876 589999999999999999 9999999999999999777778888887643 5888888774
No 241
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.29 E-value=5.1e-11 Score=80.19 Aligned_cols=76 Identities=25% Similarity=0.528 Sum_probs=61.6
Q ss_pred eEEEEE-EeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 16 MTKLFL-CKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 16 ~~~~~l-~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.+.+.+ .......|||.+.. | +|..|.++|||+++||+.||+|++|||.++.+.+..++..+++.. +..+.|++
T Consensus 12 ~~~~~i~~~~~~~~lG~~~~~---G-~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-g~~v~l~v 86 (90)
T 1y7n_A 12 VTTVLIRRPDLRYQLGFSVQN---G-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKT 86 (90)
T ss_dssp CEEEEEEESSTTSCCCEEEET---T-EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHC-CEEEEEEE
T ss_pred cceEEEEeCCCccccCeEecC---C-EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEE
Confidence 344444 33456679998854 4 899999999999999999999999999999877778888888854 78888887
Q ss_pred ec
Q psy2263 95 RD 96 (232)
Q Consensus 95 ~r 96 (232)
.+
T Consensus 87 ~p 88 (90)
T 1y7n_A 87 MP 88 (90)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 242
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.29 E-value=1.6e-11 Score=88.77 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=53.9
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
|+++. |.++|||+++||++||+|++|||+++.++++++++.+++..+..+.|++.+...
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 45666 999999999999999999999999999999999999999999999999987654
No 243
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2e-11 Score=84.43 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=59.4
Q ss_pred CccceEEec--------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR--------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~--------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+.. ++++. |.+++||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 22 ~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 99 (104)
T 2djt_A 22 AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS 99 (104)
T ss_dssp SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCC
T ss_pred CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 467777753 45666 99999999999 9999999999999999999999999999888899999988764
No 244
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.29 E-value=1.2e-11 Score=93.17 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=59.1
Q ss_pred CccceEEec------------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 159 GHVGFQFKR------------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~~------------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
..+||.+.. |+++. |.+++||+++| |++||+|++|||.++.+++|.+++.+|+..+..+.|+|.|+
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~ 170 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 468887755 35666 99999999999 99999999999999999999999999999989999999874
No 245
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.28 E-value=7.5e-12 Score=88.85 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=61.6
Q ss_pred CCCccceEEec------CcEEE-EccCChhhhC--CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCC----CeEEEEEeC
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASRN--GLLTDHHILEVNGQNVVGLKDKEIREIVEKAP----CVINLTIMP 223 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~~--Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~----~~~~l~v~r 223 (232)
..+.|||.+.+ ++++. |.++|||+++ ||++||+|++|||+++.+++|.++..+++..+ ..+.|++.|
T Consensus 25 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R 104 (119)
T 2cs5_A 25 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 104 (119)
T ss_dssp SSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred CCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEc
Confidence 44578998864 35666 9999999999 99999999999999999999999999998864 489999998
Q ss_pred Ccccc
Q psy2263 224 SYVYH 228 (232)
Q Consensus 224 ~~~~~ 228 (232)
+..++
T Consensus 105 ~~~~~ 109 (119)
T 2cs5_A 105 NAVYD 109 (119)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 87554
No 246
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.28 E-value=8.5e-12 Score=89.72 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=59.7
Q ss_pred CccceEEec---------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcC-CCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR---------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVV-GLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~---------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~-~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
+.|||.+.+ |+++. |.+++||+++| |++||+|++|||.++. ++++++++.+|+..+..+.|.|.|+..
T Consensus 37 ~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 37 GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV 116 (128)
T ss_dssp SCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCC
T ss_pred CccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence 467777742 56677 99999999999 9999999999999997 999999999999988999999988754
No 247
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.28 E-value=1.7e-11 Score=83.67 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=58.3
Q ss_pred CccceEEe---cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFK---RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~---~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+||.+. .|+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|..
T Consensus 20 ~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 91 (96)
T 2qkv_A 20 KELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPK 91 (96)
T ss_dssp BCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred CCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeCC
Confidence 34666653 466666 99999999999 999999999999999999999999999998889999998853
No 248
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.28 E-value=8.5e-12 Score=87.73 Aligned_cols=59 Identities=17% Similarity=0.379 Sum_probs=53.9
Q ss_pred CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
|+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+..
T Consensus 36 g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 96 (113)
T 2g5m_B 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERP 96 (113)
T ss_dssp EEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence 45666 99999999999 9999999999999999999999999999988899999987764
No 249
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.28 E-value=9.8e-12 Score=85.93 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=60.3
Q ss_pred CCccceEEecC------cEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFKRG------QIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~~g------~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...|||.+.+| .++. |.++|||+++||++||+|++|||+++.++++.++..+++..+..+.|.+.|+...
T Consensus 14 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 90 (103)
T 1wf7_A 14 PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA 90 (103)
T ss_dssp SSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCC
T ss_pred CCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence 35678888642 4555 9999999999999999999999999999999999999998888999999887643
No 250
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.28 E-value=2.7e-11 Score=82.11 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=58.4
Q ss_pred CCccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+. .|.++. |.++|||+++||++||+|++|||+++.++++.+++..++ .+..+.|.+.|+..
T Consensus 18 ~~~~G~~l~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 18 QHGFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSS 88 (93)
T ss_dssp SSSCCEEEECSSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred CCceeEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence 346788775 466666 999999999999999999999999999999998888887 57899999998754
No 251
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.3e-12 Score=85.79 Aligned_cols=82 Identities=24% Similarity=0.264 Sum_probs=69.5
Q ss_pred cceEEEEEEeeCC-CccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 14 HQMTKLFLCKDIH-GKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 14 ~~~~~~~l~~~~~-~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
...+.+.+.+.+. +++||.+.. ..+++|..|.++|||+ +||++||+|++|||.++.+.++.++...++. .++.+.|
T Consensus 7 ~~~~~v~l~~~~~~~~~G~~l~~-~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l 83 (96)
T 2edv_A 7 GVRHTVKIDKDTLLQDYGFHISE-SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSI 83 (96)
T ss_dssp CEEEEEEECCCSSSCSCSBCCCS-SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEE
T ss_pred CccEEEEEEECCCCCcccEEEec-CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 3457788888764 379999875 6789999999999996 8999999999999999999888778888876 5789999
Q ss_pred EEecCC
Q psy2263 93 VVRDRP 98 (232)
Q Consensus 93 ~v~r~~ 98 (232)
++.|+.
T Consensus 84 ~v~R~~ 89 (96)
T 2edv_A 84 TVVRCT 89 (96)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999865
No 252
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.28 E-value=1.9e-11 Score=87.35 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCccceEEec----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
...+||.+.. |+++. |.++|||+++||++||+|++|||.++.+++++++..++.. .+..+.|.+.|+..
T Consensus 38 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 38 GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 4568888754 67666 9999999999999999999999999999999999998884 66789999988753
No 253
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=87.85 Aligned_cols=70 Identities=27% Similarity=0.441 Sum_probs=60.1
Q ss_pred CccceEEe---------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcC-CCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK---------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVV-GLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~---------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~-~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
+.+||.+. .|+++. |.++|||+++| |++||+|++|||.++. +++++++..+++..+..+.|.+.|+..
T Consensus 32 ~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 111 (117)
T 2o2t_A 32 GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSL 111 (117)
T ss_dssp SCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCC
T ss_pred CCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCc
Confidence 45666553 256666 99999999999 9999999999999998 899999999999988999999998875
Q ss_pred cc
Q psy2263 227 YH 228 (232)
Q Consensus 227 ~~ 228 (232)
..
T Consensus 112 ~~ 113 (117)
T 2o2t_A 112 PQ 113 (117)
T ss_dssp GG
T ss_pred ce
Confidence 43
No 254
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=87.55 Aligned_cols=68 Identities=22% Similarity=0.412 Sum_probs=59.9
Q ss_pred CccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..|||.+.. |+++. |.+++||+++| |++||+|++|||+++.++++.++..+++..+..+.|.|.|+.
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 107 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 107 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 567888764 45666 99999999999 999999999999999999999999999988889999998765
Q ss_pred c
Q psy2263 226 V 226 (232)
Q Consensus 226 ~ 226 (232)
.
T Consensus 108 ~ 108 (120)
T 2eno_A 108 Q 108 (120)
T ss_dssp E
T ss_pred c
Confidence 4
No 255
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.27 E-value=9.1e-12 Score=89.82 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=59.5
Q ss_pred CCccceEEec---------CcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC-eEEEEEeCCc
Q psy2263 158 AGHVGFQFKR---------GQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPC-VINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~---------g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~-~~~l~v~r~~ 225 (232)
...|||.+.+ ++++. |.+++||+++ ||++||+|++|||+++.+++|++++++|+..++ .+.|++.|..
T Consensus 39 ~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 3568888853 36666 9999999999 899999999999999999999999999999765 5999998765
Q ss_pred cc
Q psy2263 226 VY 227 (232)
Q Consensus 226 ~~ 227 (232)
..
T Consensus 119 ~~ 120 (130)
T 1i16_A 119 LQ 120 (130)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 256
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.27 E-value=4e-11 Score=85.55 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=59.1
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~ 225 (232)
...+||.+.. |+++. |.+++||+++| |++||+|++|||+++.+++++++.++|+. .+..+.|.|.|+.
T Consensus 29 ~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 106 (123)
T 1ueq_A 29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY 106 (123)
T ss_dssp TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 4467888763 36666 99999999999 99999999999999999999999999998 4678999998765
No 257
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.27 E-value=3.1e-11 Score=84.37 Aligned_cols=68 Identities=26% Similarity=0.404 Sum_probs=60.0
Q ss_pred CccceEEec---------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR---------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~---------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+.. |+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 19 ~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 97 (110)
T 1um1_A 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDV 97 (110)
T ss_dssp TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCH
T ss_pred CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 457777743 56666 99999999999 9999999999999999999999999999988899999998764
No 258
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.27 E-value=2.3e-11 Score=87.08 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=60.0
Q ss_pred cCCCccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 156 DSAGHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 156 ~~~~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...+.+||.+.+ ++++. |.++|||+++| |++||+|++|||.++.+++|+++..+++..++.+.|.+.|.
T Consensus 28 ~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 104 (125)
T 3hpk_A 28 DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 104 (125)
T ss_dssp CTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 345678888854 35555 99999999999 99999999999999999999999999999888899999763
No 259
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.4e-11 Score=82.05 Aligned_cols=68 Identities=26% Similarity=0.471 Sum_probs=59.1
Q ss_pred CCCccceEEe---cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 157 SAGHVGFQFK---RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 157 ~~~~~g~~~~---~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
....+||.+. .+.++. |.++|||+++| |++||+|++|||+++ +.+++++.++|+..+..+.|.+.|..
T Consensus 16 ~~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~~ 88 (91)
T 2e7k_A 16 AGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSGP 88 (91)
T ss_dssp TTCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECCS
T ss_pred CCCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 4567888885 466666 99999999987 999999999999999 88889999999988888999998764
No 260
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.27 E-value=1.2e-11 Score=85.88 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCccceEEe---cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFK---RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~---~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
...+||.+. .|+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..++.+.|.+.|..
T Consensus 13 ~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 85 (106)
T 2la8_A 13 GKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPK 85 (106)
T ss_dssp SSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECC
T ss_pred CCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Confidence 345677663 467666 99999999999 999999999999999999999999999998888999998753
No 261
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-11 Score=85.49 Aligned_cols=67 Identities=28% Similarity=0.396 Sum_probs=57.9
Q ss_pred CccceEEec----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~ 225 (232)
..+||.+.. |+++. |.+++||+++| |++||+|++|||.++.++++++++++++.. +..+.|+|.|..
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 467787743 35666 99999999999 999999999999999999999999999995 467999998865
No 262
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.26 E-value=2.4e-11 Score=87.46 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=58.8
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~ 225 (232)
...+||.+.+ ++++. |.++|||+++| |++||+|++|||+++.+++|+++.++|+.. +..+.|.+.|+.
T Consensus 28 ~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 28 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 3467887764 25555 99999999999 999999999999999999999999999986 567999998875
No 263
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.26 E-value=3.5e-11 Score=84.25 Aligned_cols=68 Identities=18% Similarity=0.405 Sum_probs=58.1
Q ss_pred CccceEEe---------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCc
Q psy2263 159 GHVGFQFK---------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~---------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~ 225 (232)
..+||.+. .|+++. |.++|||+++| |++||+|++|||.++.+.+++++.++++.. +..+.|.+.|+.
T Consensus 22 ~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 101 (111)
T 2koj_A 22 EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101 (111)
T ss_dssp TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 45677664 345666 99999999999 999999999999999999999999999985 678999998776
Q ss_pred c
Q psy2263 226 V 226 (232)
Q Consensus 226 ~ 226 (232)
.
T Consensus 102 ~ 102 (111)
T 2koj_A 102 E 102 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 264
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.26 E-value=2.2e-11 Score=85.25 Aligned_cols=70 Identities=24% Similarity=0.497 Sum_probs=60.9
Q ss_pred CCccceEEe----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFK----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+||.+. .|+++. |.+++||+++| |++||+|++|||+++.+++++++..+++..+..+.|.+.|+...
T Consensus 25 ~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 25 GSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG 100 (111)
T ss_dssp SSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTT
T ss_pred CCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence 345788875 356666 99999999999 99999999999999999999999999998788999999887654
No 265
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.26 E-value=1.7e-11 Score=84.72 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=52.6
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
|+++. |.++|||++ ||++||+|++|||.++.++++.++...++..+..+.|.+.|+.
T Consensus 44 gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 44 GIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101 (103)
T ss_dssp SEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred CEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEecC
Confidence 56666 999999999 9999999999999999999999999999988899999998864
No 266
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.26 E-value=3.5e-11 Score=83.91 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=56.6
Q ss_pred CccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe-EEEEEeCCc
Q psy2263 159 GHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV-INLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~-~~l~v~r~~ 225 (232)
..+||.+. .+.++. |.++|||+++||++||+|++|||+++.+++++++.++++..++. +.|+|.|..
T Consensus 34 ~~~G~~l~~~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 34 GDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GCCCEEEESSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CceeEEEeCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 45677664 345555 99999999999999999999999999998999999999987775 999988754
No 267
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.26 E-value=4e-11 Score=84.24 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=65.9
Q ss_pred eCCCccceEEeec------------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263 24 DIHGKIGLRVAAI------------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85 (232)
Q Consensus 24 ~~~~~lGi~~~~~------------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 85 (232)
..+++||+.+... ..|++|..|.++|||+++||++||.|++|||.++.++ .++...+..
T Consensus 3 v~r~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~- 79 (113)
T 2pzd_A 3 HMRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT- 79 (113)
T ss_dssp --CEECCEEEEECCHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-
T ss_pred ccccEeEEEEEeCCHHHHHHhccccccccCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-
Confidence 4567788887641 3689999999999999999999999999999999876 567777765
Q ss_pred CCCeEEEEEecCCceeeeEeecC
Q psy2263 86 PVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 86 ~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
++.+.+++.|++...++.+...
T Consensus 80 -~~~v~l~v~R~g~~~~~~v~~~ 101 (113)
T 2pzd_A 80 -QSQLAVQIRRGRETLTLYVTPE 101 (113)
T ss_dssp -CSSEEEEEEETTEEEEEEECCE
T ss_pred -CCeEEEEEEECCEEEEEEEEEe
Confidence 5889999999888877776543
No 268
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.26 E-value=2.1e-11 Score=85.19 Aligned_cols=68 Identities=15% Similarity=0.313 Sum_probs=58.7
Q ss_pred CccceEEec--------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCC----CeEEEEEeCC
Q psy2263 159 GHVGFQFKR--------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAP----CVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~~--------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~----~~~~l~v~r~ 224 (232)
..+||.+.+ ++++. |.+++||+++| |++||+|++|||+++.+++|++++++|+..+ ..+.|.+.|+
T Consensus 25 ~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 25 TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104 (109)
T ss_dssp SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence 467888763 35666 99999999999 9999999999999999999999999999865 5689999887
Q ss_pred cc
Q psy2263 225 YV 226 (232)
Q Consensus 225 ~~ 226 (232)
..
T Consensus 105 ~~ 106 (109)
T 1wi4_A 105 GP 106 (109)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 269
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.26 E-value=3.2e-11 Score=84.77 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=60.5
Q ss_pred CCccceEEe---cCcEEE-EccCChhhhCCC-CCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFK---RGQIIR-LVKESSASRNGL-LTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~---~g~v~~-v~~~s~a~~~Gl-~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+. .|+++. |.+++||+++|| ++||+|++|||+++.+++++++.++|+..+..+.|++.|...
T Consensus 36 ~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 109 (113)
T 1va8_A 36 DIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSG 109 (113)
T ss_dssp TCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred CCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 346888775 466666 999999999998 999999999999999999999999999888889999988764
No 270
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.91 E-value=5.1e-13 Score=93.84 Aligned_cols=87 Identities=24% Similarity=0.440 Sum_probs=70.3
Q ss_pred cccccccceEEEEEEeeCCCccceEEeec---CCceEEEEecCCCHHhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy2263 8 LEDMKYHQMTKLFLCKDIHGKIGLRVAAI---HEGVFVCLVQEGSPAAL-VGLRFGDQILQVNGKTVAGSNMHQVHALLR 83 (232)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~-agL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 83 (232)
++++....++.+.+.+...++|||++... ..+++|..|.++|||++ +||++||+|++|||.++.+.+..++...++
T Consensus 20 me~~~~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~ 99 (112)
T 2lob_A 20 MENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99 (112)
Confidence 45666667788889888888899999864 25789999999999999 899999999999999998776677777776
Q ss_pred hCCCCeEEEEEe
Q psy2263 84 NCPVNNISIVVR 95 (232)
Q Consensus 84 ~~~~~~v~l~v~ 95 (232)
.. +..+.|++.
T Consensus 100 ~~-~~~v~l~V~ 110 (112)
T 2lob_A 100 QQ-RGEIEFEVV 110 (112)
Confidence 43 344666553
No 271
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.25 E-value=1.7e-11 Score=84.74 Aligned_cols=69 Identities=29% Similarity=0.404 Sum_probs=58.6
Q ss_pred CCCccceEEecC-------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHh-----CCCeEEEEEe
Q psy2263 157 SAGHVGFQFKRG-------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK-----APCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~g-------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~-----~~~~~~l~v~ 222 (232)
....+||.+.+| .++. |.+++||+++| |++||+|++|||.++.+++|++++++|+. .+..+.+.+.
T Consensus 15 ~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 15 SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp CSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 345688888632 2555 99999999999 99999999999999999999999999987 5678999888
Q ss_pred CCc
Q psy2263 223 PSY 225 (232)
Q Consensus 223 r~~ 225 (232)
|..
T Consensus 95 r~~ 97 (103)
T 1ufx_A 95 EFN 97 (103)
T ss_dssp CCC
T ss_pred Ecc
Confidence 764
No 272
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.9e-11 Score=82.42 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=59.8
Q ss_pred CCCccceEEe------cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 157 SAGHVGFQFK------RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 157 ~~~~~g~~~~------~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
..+.+||.+. .|.++. |.++|||+++||++||+|++|||.++.++++.++...++. +..+.|.+.|+...
T Consensus 20 ~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 20 PAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGSG 96 (100)
T ss_dssp SSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSCC
T ss_pred CCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCcC
Confidence 3456888885 256666 9999999999999999999999999999999999999988 68899999887643
No 273
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.25 E-value=5.2e-11 Score=83.80 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=60.5
Q ss_pred CCCccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcccc
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~ 228 (232)
..+.+||.+.. +.++. |.++|||+++| |++||+|++|||.++.+.+++++.++++..++.+.|.+.+-..|+
T Consensus 34 ~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~k 113 (114)
T 2gzv_A 34 AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 113 (114)
T ss_dssp TTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCCCCC
T ss_pred CCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeccccc
Confidence 34568888853 35555 99999999999 999999999999999888889999999988888899887766553
No 274
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=85.03 Aligned_cols=64 Identities=17% Similarity=0.370 Sum_probs=54.9
Q ss_pred CCccceEEec-------------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEE
Q psy2263 158 AGHVGFQFKR-------------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221 (232)
Q Consensus 158 ~~~~g~~~~~-------------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v 221 (232)
.+.+||.+.. +.++. |.+++||+++||++||+|++|||+++.+++++++.++|+..++.+.|.|
T Consensus 26 ~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v 103 (104)
T 2z17_A 26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103 (104)
T ss_dssp TSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred CCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence 4456777753 56666 9999999999999999999999999999999999999999877777765
No 275
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.25 E-value=1.1e-11 Score=88.93 Aligned_cols=69 Identities=23% Similarity=0.481 Sum_probs=58.8
Q ss_pred CCccceEEec----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC-------CCeEE
Q psy2263 158 AGHVGFQFKR----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA-------PCVIN 218 (232)
Q Consensus 158 ~~~~g~~~~~----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-------~~~~~ 218 (232)
...+||.+.. ++++. |.+++||+++| |++||+|++|||+++.+++|++++++|+.. +..+.
T Consensus 36 ~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~ 115 (127)
T 1wg6_A 36 SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQ 115 (127)
T ss_dssp TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEE
Confidence 4456776642 45666 99999999999 999999999999999999999999999875 78899
Q ss_pred EEEeCCcc
Q psy2263 219 LTIMPSYV 226 (232)
Q Consensus 219 l~v~r~~~ 226 (232)
|.|.|...
T Consensus 116 l~v~R~~~ 123 (127)
T 1wg6_A 116 LVILRRSG 123 (127)
T ss_dssp EEEEECSC
T ss_pred EEEEeCCC
Confidence 99988754
No 276
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.24 E-value=1.8e-11 Score=86.79 Aligned_cols=66 Identities=21% Similarity=0.400 Sum_probs=56.6
Q ss_pred CccceEEecC-------cEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhC----CCeEEEEEeCC
Q psy2263 159 GHVGFQFKRG-------QIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKA----PCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~~g-------~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~----~~~~~l~v~r~ 224 (232)
+.+||.+.+| +++. |.++|||+++ ||++||+|++|||+++.+++|++++++|+.. +..+.|++.|.
T Consensus 28 ~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 28 GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 4678887532 5555 9999999999 8999999999999999999999999999864 77899999874
No 277
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=86.65 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=60.2
Q ss_pred CCccceEEec-------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR-------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~-------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+.. |+++. |.++|||+++| |++||+|++|||+++.++++.+++.+++..+..+.|.+.|+..
T Consensus 35 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 112 (124)
T 2daz_A 35 KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED 112 (124)
T ss_dssp SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTT
T ss_pred CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 3467887753 55666 99999999999 9999999999999999999999999999988899999988754
No 278
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.24 E-value=2e-11 Score=87.85 Aligned_cols=70 Identities=23% Similarity=0.485 Sum_probs=60.1
Q ss_pred CCCccceEEec-----------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeC
Q psy2263 157 SAGHVGFQFKR-----------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223 (232)
Q Consensus 157 ~~~~~g~~~~~-----------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r 223 (232)
....+||.+.. |+++. |.++|||+++| |++||+|++|||.++.+++++++.++|+..+..+.|.+.|
T Consensus 25 ~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R 104 (129)
T 2dmz_A 25 DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104 (129)
T ss_dssp TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEE
T ss_pred CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence 34557777643 45565 99999999999 9999999999999999999999999999988889999987
Q ss_pred Ccc
Q psy2263 224 SYV 226 (232)
Q Consensus 224 ~~~ 226 (232)
+..
T Consensus 105 ~~~ 107 (129)
T 2dmz_A 105 RKT 107 (129)
T ss_dssp ESS
T ss_pred CCc
Confidence 654
No 279
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.24 E-value=9.8e-12 Score=87.08 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=66.5
Q ss_pred ceEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v 94 (232)
.+|.+.+.+. ...+||.+.. ..+++|..|.+++||+++||+.||+|++|||.++.+++..++..+++...+..+.|++
T Consensus 15 ~~r~v~l~~~-~~~~G~~l~~-~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V 92 (111)
T 1vae_A 15 PPRGIHFTVE-EGDLGFTLRG-NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92 (111)
T ss_dssp CCCCCCEECC-SSCCSCCEES-SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEE
T ss_pred CCeEEEEEcC-CCcccEEEeC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEE
Confidence 3466777775 4568998864 3578899999999999999999999999999999977777888888876666788888
Q ss_pred ec
Q psy2263 95 RD 96 (232)
Q Consensus 95 ~r 96 (232)
.|
T Consensus 93 ~~ 94 (111)
T 1vae_A 93 VS 94 (111)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 280
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.24 E-value=4.9e-11 Score=79.90 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=54.6
Q ss_pred CCccceEEe-----cCcEEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCc
Q psy2263 158 AGHVGFQFK-----RGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~-----~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~ 225 (232)
...+||.+. .+.++...++|||+ +||++||+|++|||.++.+++++++.++++. .+..+.|.+.|+.
T Consensus 13 ~~g~G~~~~~~~~~~~~~v~~v~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 13 PMGFGFTIADSPGGGGQRVKQIVDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TTBSSCEEEECTTSSSEEEEECCC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CCceeEEEEecCCCCcEEEEEecCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 346777774 35677756999999 9999999999999999999999999999985 5678999998754
No 281
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.23 E-value=1.4e-11 Score=84.72 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=57.8
Q ss_pred CccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .+.++. |.++|||+++||++||+|++|||+++.++++.++.++++..+..+.|.+.|+..
T Consensus 26 ~g~G~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 96 (100)
T 1whd_A 26 DGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96 (100)
T ss_dssp SSSSCBCCCSSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECCS
T ss_pred CeeeEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 34666553 455555 999999999999999999999999999999999999999888889999987653
No 282
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.23 E-value=6.2e-11 Score=81.57 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=56.3
Q ss_pred CccceEEec--------CcEEE-EccCChhhh-CCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCC
Q psy2263 159 GHVGFQFKR--------GQIIR-LVKESSASR-NGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~~--------g~v~~-v~~~s~a~~-~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~ 224 (232)
..+||.+.. ++++. |.+++||++ +||++||+|++|||+++.+.+++++.++|+. .+..+.|++.|.
T Consensus 21 ~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 467777741 46666 999999999 5699999999999999999999999999998 677899999875
No 283
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.23 E-value=3.1e-11 Score=81.54 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=50.4
Q ss_pred ccceEEec-------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 160 HVGFQFKR-------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 160 ~~g~~~~~-------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
.+||.+.. |.++. |.++|||+++||++||+|++|||+++.+++++++.+++++ ..++|+|.
T Consensus 21 ~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l~ltV~ 89 (94)
T 3kzd_A 21 TYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVR 89 (94)
T ss_dssp CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEEEEEEE
T ss_pred CcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CeEEEEEE
Confidence 46666642 46665 9999999999999999999999999999999999999986 45555554
No 284
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.22 E-value=1.1e-11 Score=85.71 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=60.1
Q ss_pred CCCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
....+||.+.. +.++. |.++|||+++||++||+|++|||.++.+++++++.++++..+..+.|.+.|+..
T Consensus 13 ~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~ 89 (103)
T 1v5l_A 13 GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET 89 (103)
T ss_dssp SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred CCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCe
Confidence 34567887753 34555 999999999999999999999999999988999999999888899999988764
No 285
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=9.9e-12 Score=87.10 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=60.0
Q ss_pred CCccceEEec---------------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEE
Q psy2263 158 AGHVGFQFKR---------------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLT 220 (232)
Q Consensus 158 ~~~~g~~~~~---------------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~ 220 (232)
...|||.+.+ |+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.
T Consensus 20 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 99 (111)
T 1uju_A 20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99 (111)
T ss_dssp TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEEC
T ss_pred CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 3567777753 35666 99999999999 9999999999999999999999999999988899999
Q ss_pred EeCCcc
Q psy2263 221 IMPSYV 226 (232)
Q Consensus 221 v~r~~~ 226 (232)
+.|+..
T Consensus 100 v~r~~~ 105 (111)
T 1uju_A 100 VCDGFE 105 (111)
T ss_dssp CCCCCC
T ss_pred EEECCC
Confidence 988764
No 286
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=85.39 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=59.2
Q ss_pred CccceEEe-------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK-------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~-------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .|+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.|.|+..
T Consensus 28 ~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 104 (116)
T 2dm8_A 28 SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEA 104 (116)
T ss_dssp SCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSS
T ss_pred CcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Confidence 45666664 256666 99999999999 9999999999999999999999999999888889999988764
No 287
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.21 E-value=5.3e-11 Score=82.31 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=50.5
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCC
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPS 224 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~ 224 (232)
|+++. |.++|||+++||++||+|++|||.++.+.+|+++...++. .+..+.|.+.|+
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 46 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 45666 9999999999999999999999999999999999999976 456899988764
No 288
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.21 E-value=4.9e-11 Score=84.57 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=59.4
Q ss_pred cCCCccceEEec-------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe-EEEEEeCCc
Q psy2263 156 DSAGHVGFQFKR-------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV-INLTIMPSY 225 (232)
Q Consensus 156 ~~~~~~g~~~~~-------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~-~~l~v~r~~ 225 (232)
.....+||.+.+ |+++. |.+++||+++| |++||+|++|||+++.++++.+++.+++..+.. +.+.+.|+.
T Consensus 24 ~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~ 103 (119)
T 1x6d_A 24 EEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103 (119)
T ss_dssp CTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred CCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 345678888852 46666 99999999999 999999999999999999999999999887665 557777765
Q ss_pred cc
Q psy2263 226 VY 227 (232)
Q Consensus 226 ~~ 227 (232)
..
T Consensus 104 ~~ 105 (119)
T 1x6d_A 104 TP 105 (119)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 289
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.21 E-value=6e-11 Score=81.14 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=55.7
Q ss_pred CccceEEec-----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCe-EEEEEeCCc
Q psy2263 159 GHVGFQFKR-----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCV-INLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~-~~l~v~r~~ 225 (232)
..+||.+.. |.++. |.++|||+++||++||+|++|||+++.+++++++.++++..++. +.|.+.|+.
T Consensus 20 ~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g 93 (98)
T 2jxo_A 20 SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93 (98)
T ss_dssp TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHH
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence 457777742 56666 99999999999999999999999999998899999999987654 557776654
No 290
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.21 E-value=9.1e-12 Score=97.28 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=73.6
Q ss_pred ccccceEEEEEEeeCCCccceEEeecC--CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 11 MKYHQMTKLFLCKDIHGKIGLRVAAIH--EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~lGi~~~~~~--~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
.....++.+.+.+... +|||.+.... .+++|..|.+++||+++||+.||+|++|||.++.+++..++..+++.. +.
T Consensus 5 ~~~~~~r~v~l~k~~~-glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~ 82 (216)
T 2krg_A 5 FTMLRPRLCTMKKGPS-GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GD 82 (216)
T ss_dssp TTTCCCEEEEEECCSS-SSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CS
T ss_pred ccccceEEEEEEeCCC-CceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CC
Confidence 3455678888888764 5999998754 389999999999999999999999999999999966667788888765 67
Q ss_pred eE-EEEEecCCcee
Q psy2263 89 NI-SIVVRDRPFER 101 (232)
Q Consensus 89 ~v-~l~v~r~~~~~ 101 (232)
.+ .+++.|++...
T Consensus 83 ~v~~l~V~R~g~~~ 96 (216)
T 2krg_A 83 ETKLLVVDRETDEF 96 (216)
T ss_dssp EEEEEECCHHHHHH
T ss_pred eEEEEEEEECCEEE
Confidence 88 88888866554
No 291
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.20 E-value=8.8e-11 Score=79.81 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=55.6
Q ss_pred CCccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh---CCCeEEEEEeCC
Q psy2263 158 AGHVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK---APCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~---~~~~~~l~v~r~ 224 (232)
...+||.+. .+.++. |.++|||+++||++||+|++|||.++...+++|+...++. .+..+.|.|+.+
T Consensus 27 ~~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~~ 100 (101)
T 3qik_A 27 EEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVATK 100 (101)
T ss_dssp SSSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEecC
Confidence 345677764 244555 9999999999999999999999999987778999999986 688899988754
No 292
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.20 E-value=3.9e-11 Score=84.86 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCccceEEec------------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFKR------------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~~------------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...|||.+.+ |+++. |.+++||+ +||++||+|++|||.++.+++|.+++.+++..+..+.|.+.|.
T Consensus 25 ~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 103 (117)
T 2csj_A 25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP 103 (117)
T ss_dssp SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEEC
Confidence 3577887754 35666 99999997 8899999999999999999999999999999889999999876
Q ss_pred cc
Q psy2263 225 YV 226 (232)
Q Consensus 225 ~~ 226 (232)
..
T Consensus 104 ~~ 105 (117)
T 2csj_A 104 RK 105 (117)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 293
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.20 E-value=6.5e-11 Score=84.33 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=59.6
Q ss_pred CCccceEEecC----------cEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeC
Q psy2263 158 AGHVGFQFKRG----------QIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMP 223 (232)
Q Consensus 158 ~~~~g~~~~~g----------~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r 223 (232)
...+||.+..+ .++. |.+++||+++| |++||+|++|||+++.+++++++.++|+.. +..+.|.+.|
T Consensus 26 ~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 105 (122)
T 1v5q_A 26 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 105 (122)
T ss_dssp SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEE
Confidence 46688888643 3555 99999999999 999999999999999998899999999875 5789999988
Q ss_pred Cccc
Q psy2263 224 SYVY 227 (232)
Q Consensus 224 ~~~~ 227 (232)
+...
T Consensus 106 ~~~~ 109 (122)
T 1v5q_A 106 DVAE 109 (122)
T ss_dssp ECCC
T ss_pred CCcc
Confidence 7653
No 294
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=79.60 Aligned_cols=59 Identities=22% Similarity=0.454 Sum_probs=53.1
Q ss_pred CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
|+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+..
T Consensus 34 ~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94 (97)
T ss_dssp CCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEEE
T ss_pred CEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 46666 99999999999 9999999999999999999999999999888889999987653
No 295
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.19 E-value=1.8e-10 Score=81.85 Aligned_cols=58 Identities=19% Similarity=0.425 Sum_probs=51.7
Q ss_pred CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCc
Q psy2263 168 GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSY 225 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~ 225 (232)
+.++. |.++|||+++| |++||+|++|||+++.+++++++.++++.. +..+.|.|.|+.
T Consensus 59 gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 59 PIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp CEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 45666 99999999999 999999999999999999999999999975 678999998764
No 296
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.19 E-value=1.2e-10 Score=81.67 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=64.2
Q ss_pred CCCccceEEeec------------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q psy2263 25 IHGKIGLRVAAI------------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86 (232)
Q Consensus 25 ~~~~lGi~~~~~------------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 86 (232)
.++++|+.+... ..|++|..|.++|||+++||++||+|++|||+++.++ .++...+. .
T Consensus 4 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~--~ 79 (112)
T 2p3w_A 4 MKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL--T 79 (112)
T ss_dssp CEEECCEEEEECCHHHHHHHHHHCTTC--CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH--H
T ss_pred ccceeeEEEecCCHHHHHHhcccCcCcccCCCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh--C
Confidence 455778877652 3689999999999999999999999999999999977 45666664 3
Q ss_pred CCeEEEEEecCCceeeeEeec
Q psy2263 87 VNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 87 ~~~v~l~v~r~~~~~~v~l~~ 107 (232)
++.+.+++.|++...++.+..
T Consensus 80 g~~v~l~v~R~g~~~~~~v~~ 100 (112)
T 2p3w_A 80 ESPLLLEVRRGNDDLLFSIAP 100 (112)
T ss_dssp CSSEEEEEEETTEEEEEEECC
T ss_pred CCeEEEEEEECCEEEEEEEEE
Confidence 688999999988777776643
No 297
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.19 E-value=1.6e-10 Score=89.64 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=67.4
Q ss_pred EEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEec
Q psy2263 18 KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r 96 (232)
.+.+.+.....||+.+.....+++|..|.++|+|+++| |+.||+|++|||+++.++++.++..+++. .+..+.|.+.|
T Consensus 116 ~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R 194 (206)
T 3r0h_A 116 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTR 194 (206)
T ss_dssp EEEEECCTTCCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred EEEEecCCCCccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 34445555567999998877899999999999999999 99999999999999999988778888875 46789998888
Q ss_pred C
Q psy2263 97 R 97 (232)
Q Consensus 97 ~ 97 (232)
.
T Consensus 195 ~ 195 (206)
T 3r0h_A 195 P 195 (206)
T ss_dssp E
T ss_pred C
Confidence 3
No 298
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.19 E-value=5.7e-11 Score=79.90 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=55.6
Q ss_pred CccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCc
Q psy2263 159 GHVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~ 225 (232)
..+||.+. .|.++. |.++|||+++||++||+|++|||.++.+.+++++..+++. .+..+.|.+.|+.
T Consensus 17 ~~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 17 LDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 35777664 356665 9999999999999999999999999976777999999985 4778999988753
No 299
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.19 E-value=1.4e-10 Score=80.91 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=56.1
Q ss_pred CCccceEEec---CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR---GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~---g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~ 226 (232)
...+||.+.. |.++. +.+ +++.+||++||+|++|||.++.+++|+|++++|+.. +..+.|+|.|+..
T Consensus 22 ~~G~GFsI~~~~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 22 PKGFGFAIADSPTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TTBSSEEEEEETTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CCcccEEEeCCCCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 4568888853 44554 776 588899999999999999999999999999999985 5689999998875
No 300
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.18 E-value=2.7e-11 Score=83.62 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=58.6
Q ss_pred CccceEEec------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+.. |+++. |.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 22 ~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 22 KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97 (103)
T ss_dssp TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTC
T ss_pred CcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 346776642 56666 99999999999 9999999999999999999999999999878899999988754
No 301
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=99.18 E-value=1.7e-10 Score=79.18 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=57.7
Q ss_pred CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCCceeeeEeec
Q psy2263 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 37 ~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
..|++|..|.++|||+. ||+.||+|++|||.++.++ .++...+... +++.+.+++.|+++..++.+..
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~ 74 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKNEQADIKL 74 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEE
Confidence 46899999999999995 9999999999999999987 5677777754 5889999999988777666543
No 302
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.18 E-value=9.9e-11 Score=82.98 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=58.8
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+||.+. .|+++. |.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|.+.|+.
T Consensus 25 ~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 25 TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98 (119)
T ss_dssp SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred CCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 34788775 356666 99999999999 999999999999999999999999999988889999998765
No 303
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=82.78 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=57.7
Q ss_pred CccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 159 GHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
..+||.+. .+.++. |.++|||+ +||++||+|++|||+++.++++.++..+++..+..+.|.+.|+.
T Consensus 21 ~~~G~~l~~~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 89 (96)
T 2edv_A 21 QDYGFHISESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89 (96)
T ss_dssp CSCSBCCCSSSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred CcccEEEecCCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 35677774 356666 99999996 99999999999999999999999999999988889999999876
No 304
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.18 E-value=1.4e-10 Score=98.55 Aligned_cols=84 Identities=31% Similarity=0.377 Sum_probs=72.1
Q ss_pred ceEEEEEEeeCCCccceEEee-cCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEE
Q psy2263 15 QMTKLFLCKDIHGKIGLRVAA-IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISI 92 (232)
Q Consensus 15 ~~~~~~l~~~~~~~lGi~~~~-~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l 92 (232)
.++.+.+.+. ++||+++.. ...|++|..|.+||||+++||++||+|++|||.++.++++.++...++. .+++.+.|
T Consensus 9 ~~~~v~~~k~--~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l 86 (391)
T 3tsz_A 9 SMKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 86 (391)
T ss_dssp CEEEEEEECC--SSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEE
T ss_pred CcEEEEeecC--CceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEE
Confidence 4566666665 359999987 4578999999999999999999999999999999999888889999986 46899999
Q ss_pred EEecCCce
Q psy2263 93 VVRDRPFE 100 (232)
Q Consensus 93 ~v~r~~~~ 100 (232)
++.|+++.
T Consensus 87 ~v~r~~~~ 94 (391)
T 3tsz_A 87 LAQKKKDV 94 (391)
T ss_dssp EEEECHHH
T ss_pred EEeeCCcc
Confidence 99986543
No 305
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.17 E-value=1.6e-10 Score=80.26 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=57.9
Q ss_pred CCccceEEec------------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFKR------------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~~------------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...+||.+.+ |.++. |.++|||+ +||++||+|++|||.++.++++.+....+...+..+.|.+.|+
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 96 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEEC
Confidence 3567777742 56666 99999999 9999999999999999999988888888888888999999876
Q ss_pred ccc
Q psy2263 225 YVY 227 (232)
Q Consensus 225 ~~~ 227 (232)
...
T Consensus 97 ~~~ 99 (107)
T 2h2b_A 97 KGG 99 (107)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 306
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=88.02 Aligned_cols=60 Identities=22% Similarity=0.452 Sum_probs=54.3
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.++++. |.++|||+++||++||+|++|||+++.+++++++.++|+..+..+.|.|.|+..
T Consensus 61 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121 (126)
T ss_dssp CCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 346555 999999999999999999999999999999999999999988899999988754
No 307
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.17 E-value=1.2e-10 Score=82.37 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=58.2
Q ss_pred CccceEEe----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 159 GHVGFQFK----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 159 ~~~g~~~~----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
..+||.+. .|+++. |.+++||+++||++||+|++|||+++.++++.++...+...+..+.|.+.|+...
T Consensus 30 ~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~ 103 (117)
T 1uit_A 30 EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103 (117)
T ss_dssp CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCC
T ss_pred CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCch
Confidence 46777774 356666 9999999999999999999999999999988888776777788999999887643
No 308
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.16 E-value=8.5e-11 Score=85.65 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=52.7
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCCccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPSYVY 227 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~~~~ 227 (232)
.|+++. |.++|||+++||++||+|++|||.++.+++++++..+++. .+..+.|.+.|+...
T Consensus 64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 126 (139)
T 2vz5_A 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126 (139)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 356666 9999999999999999999999999999999999999987 457799999887653
No 309
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.6e-11 Score=82.61 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=57.2
Q ss_pred CccceEEec------CcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFKR------GQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~~------g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+.. +.++. |.++|||+++ ||++||+|++|||+++.++ +.+++.+++..+..+.|.+.|+..
T Consensus 21 ~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 21 APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNS 95 (100)
T ss_dssp SCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCC
T ss_pred CCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCC
Confidence 357777753 35565 9999999999 8999999999999999996 789999999888889999988764
No 310
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=8.9e-11 Score=83.07 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=53.3
Q ss_pred CcEEE-Ecc--CChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 168 GQIIR-LVK--ESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 168 g~v~~-v~~--~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
|.++. |.+ ++||+++||++||+|++|||+++.+++++++.++++..+..+.|.+.|+...
T Consensus 45 gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~ 107 (118)
T 2yub_A 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVP 107 (118)
T ss_dssp EEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSC
T ss_pred cEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEE
Confidence 45555 888 9999999999999999999999999999999999998777899999887654
No 311
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.15 E-value=1.8e-10 Score=88.67 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=51.5
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeC
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r 223 (232)
|+++. |.++|||++ ||++||+|++|||+++.+++|.+++.+++..+..+.|.+.|
T Consensus 25 g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 80 (195)
T 2qbw_A 25 GIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 80 (195)
T ss_dssp SEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 46666 999999999 99999999999999999999999999999988899999988
No 312
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.15 E-value=4.6e-10 Score=86.35 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=65.0
Q ss_pred CccceEEeec-----------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263 27 GKIGLRVAAI-----------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95 (232)
Q Consensus 27 ~~lGi~~~~~-----------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~ 95 (232)
.+|||.+.++ ..+++|..|.++|||++ ||+.||+|++|||.++.++++.++...++.. +..+.|.+.
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~ 79 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIV 79 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEE
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence 4589988873 36899999999999999 9999999999999999999887888888765 468999999
Q ss_pred c---CCceeeeEe
Q psy2263 96 D---RPFERNVTL 105 (232)
Q Consensus 96 r---~~~~~~v~l 105 (232)
| +++...+.+
T Consensus 80 r~~~~G~~~~~~v 92 (195)
T 2qbw_A 80 REVGNGAKQEIRV 92 (195)
T ss_dssp EECSSSCEEEEEE
T ss_pred EcCCCCCCceeEe
Confidence 8 666655544
No 313
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.15 E-value=1.2e-10 Score=89.57 Aligned_cols=68 Identities=18% Similarity=0.364 Sum_probs=59.9
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
...+||.+.+ |+++. |.++|||+++||++||+|++|||.++.+++++++..+++. +..+.|.|.|...
T Consensus 95 ~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 95 PEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGL 169 (192)
T ss_dssp TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCE
T ss_pred CCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCc
Confidence 4568888853 46666 9999999999999999999999999999999999999988 8899999988764
No 314
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.14 E-value=2.1e-10 Score=98.95 Aligned_cols=83 Identities=31% Similarity=0.380 Sum_probs=72.2
Q ss_pred eEEEEEEeeCCCccceEEeec-CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEE
Q psy2263 16 MTKLFLCKDIHGKIGLRVAAI-HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIV 93 (232)
Q Consensus 16 ~~~~~l~~~~~~~lGi~~~~~-~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~ 93 (232)
+|.+.+.+. ++||+.+.++ ..|++|..|.+||||+++||++||+|++|||.++.++++.++..+++.. ++..+.|+
T Consensus 2 ~r~V~l~k~--~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~ 79 (468)
T 3shw_A 2 MKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 79 (468)
T ss_dssp EEEEEEECC--SSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE
T ss_pred ceEEEEecC--CccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 567788775 6799999764 4789999999999999999999999999999999998888899999874 58899999
Q ss_pred EecCCce
Q psy2263 94 VRDRPFE 100 (232)
Q Consensus 94 v~r~~~~ 100 (232)
+.|+++.
T Consensus 80 V~r~g~~ 86 (468)
T 3shw_A 80 AQKKKDV 86 (468)
T ss_dssp EEECHHH
T ss_pred EEECCcc
Confidence 9986543
No 315
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.13 E-value=9.6e-11 Score=93.90 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=62.0
Q ss_pred CCCccceEEec------CcEEE-EccCChhhh-CCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASR-NGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~-~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+.+||.+.+ +++|. |.+++||++ +||++||+|++|||+++.+++|++++.+++..+..+.|.|.|...
T Consensus 87 ~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~ 164 (263)
T 1z87_A 87 DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE 164 (263)
T ss_dssp TTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSS
T ss_pred CCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcc
Confidence 34679999864 46666 999999999 799999999999999999999999999999998899999988654
No 316
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=99.13 E-value=2.8e-11 Score=81.66 Aligned_cols=66 Identities=21% Similarity=0.400 Sum_probs=57.1
Q ss_pred ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCCceeeeEeec
Q psy2263 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 39 g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
|++|..|.++|||+. ||++||+|++|||.++.++ .++...+... +++.+.|++.|+++..++.+..
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~ 68 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKEKRVTLTL 68 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCEECCCEEC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence 678889999999999 9999999999999999977 5677888766 5899999999988877766654
No 317
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.13 E-value=7e-10 Score=85.13 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=67.4
Q ss_pred EEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCC
Q psy2263 18 KLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 88 (232)
.+.+.+.+. .+|+++... ..+++|..|.++|||+++| |++||+|++|||+++.++++.++...++. .+.
T Consensus 103 ~v~l~~~~~-~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~ 180 (196)
T 3gsl_A 103 EIKLIKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYD 180 (196)
T ss_dssp EEEEEEBTT-BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCE
T ss_pred EEEEecCCC-CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCC
Confidence 444555544 699999752 2578999999999999999 99999999999999999777888888875 478
Q ss_pred eEEEEEecCCcee
Q psy2263 89 NISIVVRDRPFER 101 (232)
Q Consensus 89 ~v~l~v~r~~~~~ 101 (232)
.+.|++.|++...
T Consensus 181 ~v~l~v~R~~~~~ 193 (196)
T 3gsl_A 181 VVYLKVAKPSNAE 193 (196)
T ss_dssp EEEEEEEEESCCC
T ss_pred eEEEEEeCCCCcc
Confidence 8999999876554
No 318
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.13 E-value=9.2e-11 Score=83.77 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=55.7
Q ss_pred CccceEEe---cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCC
Q psy2263 159 GHVGFQFK---RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPS 224 (232)
Q Consensus 159 ~~~g~~~~---~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~ 224 (232)
..+||.+. .+.++. |.+++||+++| |++||+|++|||+++.+.++++++++|+. .+..+.|.+.|+
T Consensus 38 ~glG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 38 LGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred ceEeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 34566553 234555 99999999999 99999999999999999899999999987 467899999987
No 319
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.13 E-value=2.3e-10 Score=76.43 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCCceeeeEe
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRPFERNVTL 105 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~~~~~v~l 105 (232)
.|+.|..+.|+|||+++||++||+|++|||+++.+| .++...+... ++..+.+++.|+++..++.+
T Consensus 19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v 85 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYI 85 (87)
T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 366788888889999999999999999999999988 4566666643 47899999999887766654
No 320
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.12 E-value=5.3e-10 Score=76.14 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=55.3
Q ss_pred CccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~ 226 (232)
..+||.+. .|+++. |.+ +|+.+||++||+|++|||+++.+++|++++++|+.. +..+.|++.|+..
T Consensus 21 ~g~G~~i~~~~~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 21 QGFGFTIADSPTGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp SSSSEEEEEETTEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CceeEEEEcCCCCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 56788775 255555 777 378899999999999999999999999999999984 6789999998764
No 321
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=99.10 E-value=3.3e-10 Score=94.75 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=70.1
Q ss_pred eeCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCe
Q psy2263 23 KDIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNN 89 (232)
Q Consensus 23 ~~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~ 89 (232)
+..++|||+.+... ..|++|..|.++|||+++||+.||+|++|||+++.++ .++...+... +++.
T Consensus 236 ~v~~~~lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~ 313 (345)
T 3stj_A 236 EIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTK 313 (345)
T ss_dssp SCCCEECCEEEEECCHHHHHHTTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCE
T ss_pred cccccccceeeEeecHHHHHhcCCCCCceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCE
Confidence 34678899988752 2789999999999999999999999999999999977 5677777654 6899
Q ss_pred EEEEEecCCceeeeEeec
Q psy2263 90 ISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 90 v~l~v~r~~~~~~v~l~~ 107 (232)
+.|++.|++++.++.+..
T Consensus 314 v~l~v~R~g~~~~~~v~l 331 (345)
T 3stj_A 314 VKLGLLRNGKPLEVEVTL 331 (345)
T ss_dssp EEEEEEETTEEEEEEEEC
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 999999999887776654
No 322
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.10 E-value=1.5e-10 Score=81.23 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=59.0
Q ss_pred CccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 159 GHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 159 ~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
..+||.+. .++++. |.+++||+++| |++||+|++|||+++.++++.++..+++..+..+.|.+.|+..
T Consensus 26 ~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 26 TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE 100 (113)
T ss_dssp SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCHH
T ss_pred CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECcc
Confidence 45777774 345555 99999999999 9999999999999999999999999999888899999987653
No 323
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=99.10 E-value=2.4e-10 Score=76.96 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=56.6
Q ss_pred ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeec
Q psy2263 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 39 g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
..+|..|.++|||+++||+.||+|++|||+++.++ .++...+...+++.+.+++.|+++..++.+..
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~ 71 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGSPLSLTLIP 71 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTEEEEEEECC
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCeEEEEEEEE
Confidence 35688999999999999999999999999999987 56777777666789999999988877776653
No 324
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.10 E-value=1.4e-10 Score=81.23 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=56.8
Q ss_pred CCccceEEe--cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC-eEEEEEeCCc
Q psy2263 158 AGHVGFQFK--RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPC-VINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~--~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~-~~~l~v~r~~ 225 (232)
...+||.+. .+.++. |.+++||+++||++||+|++|||+++.+++++++.++++..++ .+.|+|.+..
T Consensus 25 ~~~~G~~l~~~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~ 96 (111)
T 1vae_A 25 EGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96 (111)
T ss_dssp SSCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred CCcccEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecC
Confidence 356777665 345566 9999999999999999999999999998888999999998665 5888887654
No 325
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=99.09 E-value=2.1e-10 Score=77.84 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=59.2
Q ss_pred CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEecCCceeeeEeecC
Q psy2263 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 37 ~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
..|++|..|.++|||+. ||+.||+|++|||.++.++ .++...+... +++.+.+++.|+++..++.+...
T Consensus 4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 73 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLK 73 (94)
T ss_dssp CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCC
T ss_pred CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 46889999999999999 9999999999999999987 5677777765 58999999999988877776543
No 326
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=81.97 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=53.5
Q ss_pred ccceEEe-------cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCc
Q psy2263 160 HVGFQFK-------RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225 (232)
Q Consensus 160 ~~g~~~~-------~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~ 225 (232)
.+||.+. .|.++. |.++|||+++||++||+|++|||.++.+++++++.++++. ..+.|++.|..
T Consensus 30 ~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~~v~l~v~R~p 101 (114)
T 2d8i_A 30 TYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRTYP 101 (114)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--SEEEEEEEECC
T ss_pred ccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--CcEEEEEEECC
Confidence 3566653 245665 9999999999999999999999999999999999999986 38888887754
No 327
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.09 E-value=4.7e-10 Score=78.83 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=57.1
Q ss_pred CCccceEEe------cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 158 AGHVGFQFK------RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 158 ~~~~g~~~~------~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
...+||.+. .|.++. |.+++||+++||++||+|++|||+++.++++.++..+++.. ..+.|.+.|+
T Consensus 26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~ 98 (114)
T 1x5n_A 26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAA 98 (114)
T ss_dssp SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEECSS
T ss_pred CCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEcC
Confidence 456788885 256666 99999999999999999999999999999888899999876 5789999887
No 328
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.08 E-value=5.3e-10 Score=78.28 Aligned_cols=69 Identities=26% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCccceEEec-----CcEEE-EccCChhhhCCC-CCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCcc
Q psy2263 158 AGHVGFQFKR-----GQIIR-LVKESSASRNGL-LTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSYV 226 (232)
Q Consensus 158 ~~~~g~~~~~-----g~v~~-v~~~s~a~~~Gl-~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~~ 226 (232)
...+||.+.. +.++. |.++|||+++|| ++||+|++|||.++.+++++++.++++.. +..+.|.+.|+..
T Consensus 12 ~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 88 (112)
T 1qau_A 12 VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88 (112)
T ss_dssp TTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCc
Confidence 3567887742 45666 999999999997 99999999999999998889999999874 4679999988764
No 329
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-11 Score=87.07 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=55.0
Q ss_pred CCCccceEEec------CcEEE-EccCChhhh-CCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEe
Q psy2263 157 SAGHVGFQFKR------GQIIR-LVKESSASR-NGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222 (232)
Q Consensus 157 ~~~~~g~~~~~------g~v~~-v~~~s~a~~-~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~ 222 (232)
....+||.+.+ |.++. |.++|||++ +||++||+|++|||.++.+.+++++..+++..++.+.|.+.
T Consensus 37 ~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~ 110 (112)
T 2lob_A 37 DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110 (112)
Confidence 34567777754 45555 999999999 89999999999999999998889999999887777777664
No 330
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.08 E-value=6.6e-10 Score=85.83 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=62.1
Q ss_pred ccccCCCccceEEec------CcEEE-EccCChhhhC-CCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCC
Q psy2263 153 LKNDSAGHVGFQFKR------GQIIR-LVKESSASRN-GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224 (232)
Q Consensus 153 ~~~~~~~~~g~~~~~------g~v~~-v~~~s~a~~~-Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~ 224 (232)
+.......+||.+.. +.++. |.++|||+++ ||++||+|++|||+++.+++|.++..+++..+..+.|.+.|+
T Consensus 13 l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 92 (200)
T 2qt5_A 13 LMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYE 92 (200)
T ss_dssp EECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred EEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEecc
Confidence 333456778998853 35565 9999999999 899999999999999999999999999998888999999865
Q ss_pred c
Q psy2263 225 Y 225 (232)
Q Consensus 225 ~ 225 (232)
.
T Consensus 93 ~ 93 (200)
T 2qt5_A 93 L 93 (200)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.07 E-value=1.9e-10 Score=79.06 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=56.2
Q ss_pred CCccceEEec------CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 158 AGHVGFQFKR------GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 158 ~~~~g~~~~~------g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
...+||.+.. |+++. |.+++||+++||++||+|++|||+++.++++.+++..++. +..+.|.|.|+...
T Consensus 20 ~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~ 95 (101)
T 1uez_A 20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG-SKKLVLSVYSAGRI 95 (101)
T ss_dssp TTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSS-SSSCCEEECCCCCC
T ss_pred CCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcC-CCeEEEEEEECCcc
Confidence 4568888853 56666 9999999999999999999999999999988777766654 45788988887543
No 332
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=99.07 E-value=5.7e-10 Score=92.38 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=69.2
Q ss_pred eCCCccceEEeec------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeE
Q psy2263 24 DIHGKIGLRVAAI------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNI 90 (232)
Q Consensus 24 ~~~~~lGi~~~~~------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v 90 (232)
..++|||+.+... ..+++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. .+++.+
T Consensus 218 ~~~~~lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v 295 (318)
T 1te0_A 218 VIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVI 295 (318)
T ss_dssp CCCEECCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEE
T ss_pred cccccceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEE
Confidence 4567899888652 3689999999999999999999999999999999987 567777775 468999
Q ss_pred EEEEecCCceeeeEeec
Q psy2263 91 SIVVRDRPFERNVTLHK 107 (232)
Q Consensus 91 ~l~v~r~~~~~~v~l~~ 107 (232)
.|++.|+++..++.+..
T Consensus 296 ~l~v~R~g~~~~~~v~~ 312 (318)
T 1te0_A 296 PVVVMRDDKQLTLQVTI 312 (318)
T ss_dssp EEEEESSSCEEEEEEEC
T ss_pred EEEEEECCEEEEEEEEE
Confidence 99999998887776654
No 333
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=99.07 E-value=8.3e-10 Score=74.99 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=52.1
Q ss_pred eEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEecCC--ceeeeEe
Q psy2263 40 VFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVRDRP--FERNVTL 105 (232)
Q Consensus 40 ~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~v~r~~--~~~~v~l 105 (232)
.+|..|.++|||+++||+.||+|++|||+++.+| .++...+.... ++.+.+++.|++ .+.++.+
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l 70 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKL 70 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEE
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEE
Confidence 4688999999999999999999999999999988 45666676554 478999999976 3444444
No 334
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=99.05 E-value=8.3e-10 Score=91.61 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=68.9
Q ss_pred eCCCccceEEeec--CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEec-CCc
Q psy2263 24 DIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRD-RPF 99 (232)
Q Consensus 24 ~~~~~lGi~~~~~--~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r-~~~ 99 (232)
..+++||+.+... ..+++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. .+++.+.|++.| +++
T Consensus 226 ~~~~~lGi~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~ 303 (324)
T 1y8t_A 226 ASHASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGG 303 (324)
T ss_dssp CCCEECCEEEESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred ccccccceEeeeccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCC
Confidence 4577899998753 5789999999999999999999999999999999987 456667765 358999999999 888
Q ss_pred eeeeEeec
Q psy2263 100 ERNVTLHK 107 (232)
Q Consensus 100 ~~~v~l~~ 107 (232)
..++.+..
T Consensus 304 ~~~~~v~~ 311 (324)
T 1y8t_A 304 SRTVQVTL 311 (324)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 77776654
No 335
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.05 E-value=1.2e-09 Score=75.56 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=57.7
Q ss_pred ccceEEeecC---CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEecCCceeee
Q psy2263 28 KIGLRVAAIH---EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRDRPFERNV 103 (232)
Q Consensus 28 ~lGi~~~~~~---~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r~~~~~~v 103 (232)
++|+...... .|+.|..+.|+|||+++||++||+|++|||+++.+|.+ +...+.. .++..+.+++.|++...++
T Consensus 24 ~~g~~~~~~~~~~~G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d--~~~~~~~~~~g~~v~l~v~R~g~~~~~ 101 (105)
T 2i4s_A 24 YVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNV--MNTLFQSMNEMTEMSLTVERDGQQHDV 101 (105)
T ss_dssp HEEEEEEEETTEEEEEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTH--HHHHHHHHTTCSEEEEEEEETTEEEEE
T ss_pred hceeEEEecCCcEEEEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCeEEEEEEECCEEEEE
Confidence 4555543322 35667778888888999999999999999999999964 5555654 4578999999998877666
Q ss_pred Ee
Q psy2263 104 TL 105 (232)
Q Consensus 104 ~l 105 (232)
.+
T Consensus 102 ~v 103 (105)
T 2i4s_A 102 YI 103 (105)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 336
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.04 E-value=1.7e-09 Score=83.32 Aligned_cols=80 Identities=19% Similarity=0.412 Sum_probs=66.9
Q ss_pred EEEEEeeCCCccceEEeec-----CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEE
Q psy2263 18 KLFLCKDIHGKIGLRVAAI-----HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS 91 (232)
Q Consensus 18 ~~~l~~~~~~~lGi~~~~~-----~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~ 91 (232)
.+.+.+.....||+.+... ..+++|..|.++|||+++| |+.||+|++|||.++.+++..++..+++.. +..+.
T Consensus 110 ~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~ 188 (196)
T 1p1d_A 110 HVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVK 188 (196)
T ss_dssp EEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEE
T ss_pred EEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEE
Confidence 3444434456699999764 4689999999999999999 999999999999999997778899999876 78999
Q ss_pred EEEecCC
Q psy2263 92 IVVRDRP 98 (232)
Q Consensus 92 l~v~r~~ 98 (232)
|++.|++
T Consensus 189 l~v~R~~ 195 (196)
T 1p1d_A 189 LKIRKDE 195 (196)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 9998854
No 337
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.03 E-value=1.7e-09 Score=84.12 Aligned_cols=93 Identities=25% Similarity=0.354 Sum_probs=73.1
Q ss_pred CCccceEEee------cCCceEEEEecCCCHHhhcCCCC-CCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCC
Q psy2263 26 HGKIGLRVAA------IHEGVFVCLVQEGSPAALVGLRF-GDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98 (232)
Q Consensus 26 ~~~lGi~~~~------~~~g~~V~~V~~~s~A~~agL~~-GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 98 (232)
.+++|+++.. ...|++|..|.++|||+++||+. ||+|++|||. +.++. ++...+...+++.+.|++.|+.
T Consensus 94 ~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~--~l~~~l~~~~g~~v~l~v~r~~ 170 (209)
T 3rle_A 94 QGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESE--DLFSLIETHEAKPLKLYVYNTD 170 (209)
T ss_dssp SSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSS--CHHHHHHHTTTSCEEEEEEETT
T ss_pred cCccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHH--HHHHHHHhCCCCeEEEEEEECC
Confidence 4579998874 22689999999999999999999 9999999998 88874 5777777767889999998854
Q ss_pred --ceeeeEeecCC----CCeeCeEEeCCe
Q psy2263 99 --FERNVTLHKDS----AGHVGFQFKRGQ 121 (232)
Q Consensus 99 --~~~~v~l~~~~----~~~lg~~~~~~~ 121 (232)
..+++++.+.. .+.+|+.+..+.
T Consensus 171 ~~~~~~v~l~p~~~~~g~g~lG~~~~~g~ 199 (209)
T 3rle_A 171 TDNCREVIITPNSAWGGEGSLGCGIGYGY 199 (209)
T ss_dssp TTEEEEEEECCCTTSSSSSSSCEEEECSG
T ss_pred ceEEEEEEEEecCCCCCceeeeEEecCce
Confidence 45677776642 455777766544
No 338
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-09 Score=78.25 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=56.1
Q ss_pred CccceEEec-----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCC-eEEEEEeCCc
Q psy2263 159 GHVGFQFKR-----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPC-VINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~-~~~l~v~r~~ 225 (232)
..+||.+.. |.++. |.++|||+++||++||+|++|||.++.+++++++..+++..++ .+.|.+.|+.
T Consensus 20 ~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g 93 (128)
T 2kjd_A 20 SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93 (128)
T ss_dssp SSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHH
T ss_pred CcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCC
Confidence 457777742 56666 9999999999999999999999999999889999999998654 4668887754
No 339
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=99.02 E-value=2.3e-09 Score=91.12 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=71.6
Q ss_pred CCCccceEEeec---CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCc--
Q psy2263 25 IHGKIGLRVAAI---HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPF-- 99 (232)
Q Consensus 25 ~~~~lGi~~~~~---~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~-- 99 (232)
...++|+.+... ..+++|..|.++|||+++||+.||+|++|||+++.+++..++...++..+++.+.|++.|.+.
T Consensus 83 ~~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~ 162 (388)
T 1fc6_A 83 SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS 162 (388)
T ss_dssp SCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEE
T ss_pred ceEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCc
Confidence 445789998765 578999999999999999999999999999999999976677888876678999999999876
Q ss_pred -eeeeEeecC
Q psy2263 100 -ERNVTLHKD 108 (232)
Q Consensus 100 -~~~v~l~~~ 108 (232)
..++.+.+.
T Consensus 163 ~~~~~~l~r~ 172 (388)
T 1fc6_A 163 NTRTLQLTRQ 172 (388)
T ss_dssp EEEEEEEECB
T ss_pred ceEEEEEEEc
Confidence 667776653
No 340
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=99.02 E-value=1.1e-09 Score=91.84 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=69.0
Q ss_pred eeCCCccceEEeecC-------CceEEEEecCCCHHhhcCCCC-----------CCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 23 KDIHGKIGLRVAAIH-------EGVFVCLVQEGSPAALVGLRF-----------GDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 23 ~~~~~~lGi~~~~~~-------~g~~V~~V~~~s~A~~agL~~-----------GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
+..+++||+.+.... .|++|..|.++|||+++||+. ||+|++|||+++.++ .++...+..
T Consensus 229 ~~~~~~lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~ 306 (348)
T 3qo6_A 229 KVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQ 306 (348)
T ss_dssp SCCCEECCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTT
T ss_pred ceeeeecCcEEccchhhhhcCCceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHh
Confidence 345678999886522 689999999999999999999 999999999999998 467777754
Q ss_pred -CCCCeEEEEEecCCceeeeEeec
Q psy2263 85 -CPVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 85 -~~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
.+++.+.|++.|++++.++.+..
T Consensus 307 ~~~g~~v~l~v~R~g~~~~~~v~l 330 (348)
T 3qo6_A 307 CKVGDEVTVEVLRGDHKEKISVTL 330 (348)
T ss_dssp CCTTCEEEEEEECSSSEEEEEEEC
T ss_pred CCCcCEEEEEEEECCEEEEEEEEE
Confidence 35899999999998887766643
No 341
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.00 E-value=1.1e-09 Score=92.85 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=59.3
Q ss_pred CccceEEec----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCc
Q psy2263 159 GHVGFQFKR----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~ 225 (232)
+.+||.+.+ |+++. |.+||||+++||++||+|++|||.++.++++++++.+|+. .+..+.|++.|+.
T Consensus 19 ~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 19 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 458888854 56666 9999999999999999999999999999999999999995 6778999998775
No 342
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.00 E-value=9.5e-10 Score=94.90 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=60.0
Q ss_pred CccceEEe----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCc
Q psy2263 159 GHVGFQFK----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~ 225 (232)
..+||.+. .|++|. |.+||||+++||++||+|++|||.++.++++++++.+|+. .+..+.|.+.|+.
T Consensus 11 ~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 66888884 467666 9999999999999999999999999999999999999998 6788999998865
No 343
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=6.1e-10 Score=79.49 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=54.5
Q ss_pred ccceEEe--------cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCcc
Q psy2263 160 HVGFQFK--------RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSYV 226 (232)
Q Consensus 160 ~~g~~~~--------~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~~ 226 (232)
.+||.+. .|+++. |.+++||+++| |++||+|++|||+++.+. +++..+|+.. +..+.|.+.|+..
T Consensus 33 ~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~ 108 (124)
T 1wh1_A 33 KLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIARPEL 108 (124)
T ss_dssp CCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCSCCEEEEECSS
T ss_pred cccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCEEEEEEEECCE
Confidence 4677663 356666 99999999999 999999999999999965 9999999874 5678999987764
No 344
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.94 E-value=5.4e-09 Score=78.30 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=55.8
Q ss_pred CCCccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCC-CeEEEEEeCC
Q psy2263 157 SAGHVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP-CVINLTIMPS 224 (232)
Q Consensus 157 ~~~~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~-~~~~l~v~r~ 224 (232)
..+.+||.+. .|.++. |.++|||+++||++||+|++|||+++.+++++....+++..+ ..+.|++.++
T Consensus 14 ~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~ 86 (166)
T 1w9e_A 14 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 86 (166)
T ss_dssp TTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred CCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence 3456788774 466666 999999999999999999999999999998766777777644 4899999665
No 345
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.93 E-value=6e-10 Score=78.13 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=49.6
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.|.++. |.++|||+++||++||+|++|||+++.+. +++...++. +..+.|.+.|+..
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~ 92 (113)
T 2pzd_A 35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRE 92 (113)
T ss_dssp SCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-CSSEEEEEEETTE
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCE
Confidence 455555 99999999999999999999999999977 999999987 5789999988764
No 346
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.93 E-value=7.8e-09 Score=73.72 Aligned_cols=66 Identities=27% Similarity=0.280 Sum_probs=55.7
Q ss_pred CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEecCCceeeeEeec
Q psy2263 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 37 ~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
..+++|..|.++|||+++ |+.||+|++|||.++.++ .++...+.. .+++.+.+++ |+++ .++.+..
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~ 90 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT-FHLKTGR 90 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCB
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEec
Confidence 468999999999999999 999999999999999987 467777764 4588999999 8777 6666654
No 347
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.92 E-value=1.1e-08 Score=91.36 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEecCCceeeeE
Q psy2263 26 HGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN-CPVNNISIVVRDRPFERNVT 104 (232)
Q Consensus 26 ~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~~v~l~v~r~~~~~~v~ 104 (232)
..+||+.+.....+++|..|.++|||+++||++||+|++|||.++. . .++...+.. .+++.+.|++.|+++..++.
T Consensus 484 ~~~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~ 560 (597)
T 4fgm_A 484 RVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-E--QSVKRILERYIPGDTVTIHAFRRDELMTLE 560 (597)
T ss_dssp SCCCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-T--TTHHHHHTTCCTTCEEEEEEEETTEEEEEE
T ss_pred ccccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-H--HHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 4579999987778999999999999999999999999999999994 4 346666765 35899999999999888877
Q ss_pred eecC
Q psy2263 105 LHKD 108 (232)
Q Consensus 105 l~~~ 108 (232)
+...
T Consensus 561 v~l~ 564 (597)
T 4fgm_A 561 LTWQ 564 (597)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 348
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.92 E-value=1.3e-09 Score=78.11 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=57.5
Q ss_pred CccceEEec-----CcEEE-EccCChhhhCCC-CCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCccc
Q psy2263 159 GHVGFQFKR-----GQIIR-LVKESSASRNGL-LTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSYVY 227 (232)
Q Consensus 159 ~~~g~~~~~-----g~v~~-v~~~s~a~~~Gl-~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~~~ 227 (232)
..+||.+.. +.++. |.++|||+++|| ++||+|++|||.++.+++++++.++++.. +..+.|.+.|+...
T Consensus 20 ~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 96 (127)
T 1b8q_A 20 GGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG 96 (127)
T ss_dssp SCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCS
T ss_pred CcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCce
Confidence 456666642 55666 999999999998 99999999999999998889999999874 46799999887643
No 349
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.91 E-value=6.4e-10 Score=74.92 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=47.4
Q ss_pred EEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCccc
Q psy2263 171 IRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYVY 227 (232)
Q Consensus 171 ~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~~ 227 (232)
..|.++|||++ ||++||+|++|||.++.++ +++..++... +..+.|.+.|+...
T Consensus 6 ~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 6 SSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred EEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 34899999999 9999999999999999987 8999999874 67899999987643
No 350
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.91 E-value=4.8e-09 Score=71.16 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=47.8
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC-C-CeEEEEEeCCc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA-P-CVINLTIMPSY 225 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~-~~~~l~v~r~~ 225 (232)
|..|.++|||+++||++||+|++|||+++.++ +++...|... + ..+.+.+.|+.
T Consensus 6 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g 61 (95)
T 3id1_A 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFG 61 (95)
T ss_dssp EEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTT
T ss_pred EEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECC
Confidence 55699999999999999999999999999988 9999988764 3 57999999876
No 351
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.88 E-value=8.1e-09 Score=85.69 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=65.4
Q ss_pred eeCCCccceEEeec------------------CCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q psy2263 23 KDIHGKIGLRVAAI------------------HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRN 84 (232)
Q Consensus 23 ~~~~~~lGi~~~~~------------------~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 84 (232)
+..++++|+.+... ..|++|..|.++|||+++||+.||+|++|||+++.++ .++...++.
T Consensus 223 ~~~r~~lGv~~~~l~~~~~~~~~l~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~ 300 (325)
T 1lcy_A 223 GSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT 300 (325)
T ss_dssp ----EECCEEEEECCHHHHHHHTTSCTTSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT
T ss_pred cccccccceEeecCCHHHHHhhCccccccccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC
Confidence 34567788887641 2589999999999999999999999999999999977 567777764
Q ss_pred CCCCeEEEEEecCCceeeeEeec
Q psy2263 85 CPVNNISIVVRDRPFERNVTLHK 107 (232)
Q Consensus 85 ~~~~~v~l~v~r~~~~~~v~l~~ 107 (232)
++.+.|++.|+++..++.+..
T Consensus 301 --~~~v~l~v~R~g~~~~~~v~~ 321 (325)
T 1lcy_A 301 --QSQLAVQIRRGRETLTLYVTP 321 (325)
T ss_dssp --CSSEEEEEEETTEEEEEEECC
T ss_pred --CCeEEEEEEECCEEEEEEEEE
Confidence 588999999999888877654
No 352
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.87 E-value=5.5e-09 Score=71.55 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=48.7
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
.|.++. |.++|||+. ||++||+|++|||+++.++ +++..++.. .+..+.|++.|+..
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~ 66 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDK 66 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 355555 999999996 9999999999999999988 999999986 45789999988764
No 353
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.87 E-value=3.7e-09 Score=76.42 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=49.6
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYVY 227 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~~ 227 (232)
.|.++. |.++|||+ +||++||+|++|||+++.+. .++...+... +..+.|++.|+...
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 117 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKE 117 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 455555 99999999 99999999999999999988 8999998874 67899999887643
No 354
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=75.68 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=48.7
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.|.++. +.++|||+++||++||+|++|||+++.+. .++...++. +..+.|.+.|+..
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-g~~v~l~v~R~g~ 92 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLT-ESPLLLEVRRGND 92 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-CSSEEEEEEETTE
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCE
Confidence 455555 99999999999999999999999999987 999988854 6778899887754
No 355
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.83 E-value=2.9e-09 Score=83.05 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=56.0
Q ss_pred CccceEEec-----CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeE-EEEEeCCc
Q psy2263 159 GHVGFQFKR-----GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVI-NLTIMPSY 225 (232)
Q Consensus 159 ~~~g~~~~~-----g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~-~l~v~r~~ 225 (232)
..+||.+.. |+++. |.+++||+++||++||+|++|||.++.+++++++..+|+..+..+ .|++.|+.
T Consensus 20 ~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g 93 (216)
T 2krg_A 20 SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93 (216)
T ss_dssp SSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHH
T ss_pred CCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECC
Confidence 457777742 56555 999999999999999999999999999888899999998777778 77776654
No 356
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.83 E-value=3.7e-09 Score=70.54 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=44.8
Q ss_pred EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 173 LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 173 v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
+.|+|||+++||++||+|++|||+++.++ +++.+++.. .+..+.|.+.|+..
T Consensus 26 ~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~ 79 (87)
T 2i6v_A 26 GKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ 79 (87)
T ss_dssp CSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred CCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 66677789999999999999999999988 999988875 45689999988764
No 357
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.81 E-value=3.8e-09 Score=71.52 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=48.5
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~~ 226 (232)
|.++. |.++|||++ ||++||+|++|||.++.+. .++..++... +..+.|.+.|+..
T Consensus 6 Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 64 (94)
T 2kl1_A 6 GVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRK 64 (94)
T ss_dssp CEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred cEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 44555 899999999 9999999999999999987 9999999874 6789999988764
No 358
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.80 E-value=7.6e-09 Score=69.46 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=47.6
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhC-CCeEEEEEeCCcc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA-PCVINLTIMPSYV 226 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~-~~~~~l~v~r~~~ 226 (232)
+..+.++|||+++||++||+|++|||+++.++ +++...+... +..+.|.+.|+..
T Consensus 8 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~ 63 (91)
T 2zpm_A 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGS 63 (91)
T ss_dssp CSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTE
T ss_pred EEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCe
Confidence 44588999999999999999999999999987 9999998864 5578898887654
No 359
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.79 E-value=1.3e-08 Score=84.15 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=60.8
Q ss_pred CeEeecccccCCCccceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeC
Q psy2263 147 GQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMP 223 (232)
Q Consensus 147 g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r 223 (232)
|..+..+.......+|+....|.++. |.++|||+++||++||+|++|||+++.+. +++..+++. .+..+.|++.|
T Consensus 224 Gi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R 301 (318)
T 1te0_A 224 GIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMR 301 (318)
T ss_dssp CEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEES
T ss_pred eeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 44444444333444555444677666 99999999999999999999999999988 999999986 56789999998
Q ss_pred Cccc
Q psy2263 224 SYVY 227 (232)
Q Consensus 224 ~~~~ 227 (232)
+...
T Consensus 302 ~g~~ 305 (318)
T 1te0_A 302 DDKQ 305 (318)
T ss_dssp SSCE
T ss_pred CCEE
Confidence 7643
No 360
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.75 E-value=5.4e-09 Score=87.39 Aligned_cols=60 Identities=17% Similarity=0.338 Sum_probs=52.5
Q ss_pred ecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 166 KRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 166 ~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
..|.++. |.++|||+++||++||+|++|||+++.+. .++...+.. .+..+.|++.|+...
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP 324 (345)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3576666 99999999999999999999999999988 999999986 567899999987653
No 361
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.72 E-value=1.6e-08 Score=69.88 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=44.2
Q ss_pred EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 173 LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 173 v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
..|+|||+++||++||+|++|||+++.++ .++..++.. .+..+.|.+.|+..
T Consensus 44 ~~pas~A~~aGl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~ 97 (105)
T 2i4s_A 44 GKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ 97 (105)
T ss_dssp CSCTHHHHHHTCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTE
T ss_pred CCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence 55666779999999999999999999999 888888875 46689999988764
No 362
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.69 E-value=1.8e-09 Score=89.87 Aligned_cols=67 Identities=25% Similarity=0.461 Sum_probs=0.0
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecC
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKD 108 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~ 108 (232)
.|++|..|.++|||+++||+.||+|++|||+++.++. ++...++. ++.+.|++.|++++.++.+.+.
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~--~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p~ 320 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN--DVSDVIKR--ESTLNMVVRRGNEDIMITVIPE 320 (332)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHH--HHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence 5789999999999999999999999999999999874 56666653 6789999999888887777654
No 363
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.65 E-value=9.9e-08 Score=82.22 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=60.4
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEeecCC
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDS 109 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l~~~~ 109 (232)
.|++|..|.++|||+++||+.||+|++|||+++.++ .++.++++... ..+.|++.|++.++.+.+.+..
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~~~~~ 431 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNESIYLLMRLEH 431 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEECCEEEEEEEEecc
Confidence 589999999999999999999999999999999987 57888887643 5899999999988888776643
No 364
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.58 E-value=1.3e-07 Score=81.77 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=57.4
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCceeeeEe
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTL 105 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~~~v~l 105 (232)
.|++|..|.++|||+++||++||+|++|||+++.++ .++.+.++. .+..+.|.+.|++..+.+.+
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l 450 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQE-KKKELLVQVLRGPGSMYLLV 450 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence 478999999999999999999999999999999987 578888875 57889999999888877654
No 365
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.58 E-value=1.4e-07 Score=67.13 Aligned_cols=55 Identities=27% Similarity=0.257 Sum_probs=46.9
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
|.++. |.++|||+++ |++||+|++|||+++.++ +++...+.. .+..+.|.+ |+..
T Consensus 26 gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 26 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp CEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred ceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 44555 9999999999 999999999999999988 999999874 466889988 7653
No 366
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.57 E-value=1e-07 Score=81.06 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=55.8
Q ss_pred CCccceEEeecCC-----ceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEecCCc
Q psy2263 26 HGKIGLRVAAIHE-----GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPF 99 (232)
Q Consensus 26 ~~~lGi~~~~~~~-----g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 99 (232)
.-++|+.+..... .++|..|.++|||++|||+.||+|++|||.++.+++ +..+++. ++..+.|++.|++.
T Consensus 73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVV 147 (403)
T ss_dssp BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC
T ss_pred ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCc
Confidence 3446676665332 378999999999999999999999999999999984 4555655 78899999998654
No 367
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.50 E-value=5.1e-08 Score=82.75 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=56.2
Q ss_pred CCccceEEec--------CcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHHHHHHHhC--CCeEEEEEeCCc
Q psy2263 158 AGHVGFQFKR--------GQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKA--PCVINLTIMPSY 225 (232)
Q Consensus 158 ~~~~g~~~~~--------g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~--~~~~~l~v~r~~ 225 (232)
...+||.+.. |.++. |.++|||+++| |++||+|++|||.++.+++|+++..+++.. +..+.|.+.|..
T Consensus 215 ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~ 294 (388)
T 3suz_A 215 GEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCP 294 (388)
T ss_dssp SCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECC
T ss_pred CCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccccccc
Confidence 3467776642 35565 99999999999 999999999999999999999999999885 345888887754
No 368
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.49 E-value=3.5e-07 Score=75.70 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=55.7
Q ss_pred CCccceEEe-----cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeC-Ccc
Q psy2263 158 AGHVGFQFK-----RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMP-SYV 226 (232)
Q Consensus 158 ~~~~g~~~~-----~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r-~~~ 226 (232)
...+|+.+. .|.++. |.++|||+++||++||+|++|||+++.+. .++...+.. .+..+.|++.| +..
T Consensus 228 ~~~lGi~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~ 303 (324)
T 1y8t_A 228 HASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGG 303 (324)
T ss_dssp CEECCEEEESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred ccccceEeeeccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCC
Confidence 345777764 356555 99999999999999999999999999988 899999875 46789999988 543
No 369
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.48 E-value=1.6e-07 Score=77.80 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=51.0
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVY 227 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~ 227 (232)
.|.++. |.++|||+++||++||+|++|||+++.+. +++.++++. +..+.|.+.|+...
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~-~~~v~l~v~R~g~~ 314 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRET 314 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT-CSSEEEEEEETTEE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC-CCeEEEEEEECCEE
Confidence 466666 99999999999999999999999999988 999999987 57899999887653
No 370
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.45 E-value=5.7e-07 Score=76.34 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=50.5
Q ss_pred CcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCCcc
Q psy2263 168 GQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPSYV 226 (232)
Q Consensus 168 g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~~~ 226 (232)
+.++. |.++|||+++||++||+|++|||+++.+++.+++..+++. .+..+.|++.|+..
T Consensus 100 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 100 DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA 160 (388)
T ss_dssp CEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 44455 9999999999999999999999999999988999998875 45678898887654
No 371
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.37 E-value=1.3e-06 Score=82.70 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=68.7
Q ss_pred eeCCCccceEEeecCCceEEEEecCC--------CHHhhcC--CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEE
Q psy2263 23 KDIHGKIGLRVAAIHEGVFVCLVQEG--------SPAALVG--LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISI 92 (232)
Q Consensus 23 ~~~~~~lGi~~~~~~~g~~V~~V~~~--------s~A~~ag--L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l 92 (232)
....+++|+.+.....+++|..|.++ |||+++| |+ ||+|++|||+++.++. ++...++..+++.+.|
T Consensus 733 ~~~~~g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l 809 (1045)
T 1k32_A 733 PFRSGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI 809 (1045)
T ss_dssp CCCCCBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred ccccceecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence 34456899999877789999999998 9999999 99 9999999999999985 5677788777999999
Q ss_pred EEecCC-ceeeeEeec
Q psy2263 93 VVRDRP-FERNVTLHK 107 (232)
Q Consensus 93 ~v~r~~-~~~~v~l~~ 107 (232)
++.|++ ..+++.+.+
T Consensus 810 ~v~r~~~~~~~~~~~~ 825 (1045)
T 1k32_A 810 RLSGKGGDKRDLMIDI 825 (1045)
T ss_dssp EEECSSSCEEEEEEEC
T ss_pred EEECCCCceEEEEEEE
Confidence 999976 455666653
No 372
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.33 E-value=8e-07 Score=79.28 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=53.3
Q ss_pred CccceEEe---cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 159 GHVGFQFK---RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 159 ~~~g~~~~---~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
..+|+.+. +|.++. |.++|||+++||++||+|++|||.++. . .++.++++. .+..+.|+|.|+...
T Consensus 485 ~~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 556 (597)
T 4fgm_A 485 VNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-E--QSVKRILERYIPGDTVTIHAFRRDEL 556 (597)
T ss_dssp CCCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-T--TTHHHHHTTCCTTCEEEEEEEETTEE
T ss_pred cccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-H--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 46777774 245555 999999999999999999999999994 4 777888865 567899999887654
No 373
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.30 E-value=7.4e-07 Score=74.52 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=51.7
Q ss_pred cCcEEE-EccCChhhhCCCCC-----------CCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCccc
Q psy2263 167 RGQIIR-LVKESSASRNGLLT-----------DHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYVY 227 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~-----------GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~~ 227 (232)
.|.++. |.++|||+++||++ ||+|++|||+++.+. +++...|.. .+..+.|++.|+...
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 323 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK 323 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence 466666 99999999999999 999999999999999 999999965 467899999988653
No 374
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.27 E-value=9.5e-08 Score=82.54 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=53.3
Q ss_pred cceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHh--CCCeEEEEEeCCcc
Q psy2263 161 VGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEK--APCVINLTIMPSYV 226 (232)
Q Consensus 161 ~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~--~~~~~~l~v~r~~~ 226 (232)
+|+....|.++. |.++|||+++||++||+|++|||+++.++ .++...+.. .+..+.|++.|+..
T Consensus 280 lgl~~~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 280 MKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp SCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred hCCCCCCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 333333577776 99999999999999999999999999999 899998875 56789999988754
No 375
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.24 E-value=1.3e-07 Score=78.63 Aligned_cols=57 Identities=21% Similarity=0.488 Sum_probs=0.0
Q ss_pred cCcEEE-EccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 167 RGQIIR-LVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 167 ~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
.|.++. |.++|||+++||++||+|++|||+++.+. +++..+++. +..+.|++.|+..
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~ 311 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKR-ESTLNMVVRRGNE 311 (332)
T ss_dssp -------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCE
Confidence 466555 99999999999999999999999999888 888888876 6678888888764
No 376
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.09 E-value=1.5e-06 Score=73.90 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=44.7
Q ss_pred EEEEccCChhhhCCCCCCCEEEEECCeEcCCCCHHHHHHHHHhCCCeEEEEEeCCcc
Q psy2263 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYV 226 (232)
Q Consensus 170 v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~ 226 (232)
|..|.++|||+++||++||+|++|||+++.+.+ +..+++..+..+.|.+.|+..
T Consensus 94 V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 94 ISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV 147 (403)
T ss_dssp EEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred EEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence 445999999999999999999999999999883 566666656678888877643
No 377
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.51 E-value=0.00017 Score=68.35 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=50.3
Q ss_pred ccceEEe---cCcEEE-EccC--------ChhhhCC--CCCCCEEEEECCeEcCCCCHHHHHHHHHh-CCCeEEEEEeCC
Q psy2263 160 HVGFQFK---RGQIIR-LVKE--------SSASRNG--LLTDHHILEVNGQNVVGLKDKEIREIVEK-APCVINLTIMPS 224 (232)
Q Consensus 160 ~~g~~~~---~g~v~~-v~~~--------s~a~~~G--l~~GD~Il~Vng~~~~~~~~~~~~~~l~~-~~~~~~l~v~r~ 224 (232)
.+|+.+. ++.++. +.++ |||+++| |+ ||+|++|||+++.++ .++..+|+. .+..+.|++.|+
T Consensus 738 g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~~~~~g~~v~l~v~r~ 814 (1045)
T 1k32_A 738 RIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRLSGK 814 (1045)
T ss_dssp BCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEEECS
T ss_pred eecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhhcCCCCCEEEEEEECC
Confidence 4565553 344444 8887 9999999 99 999999999999998 588888876 456799999886
Q ss_pred c
Q psy2263 225 Y 225 (232)
Q Consensus 225 ~ 225 (232)
.
T Consensus 815 ~ 815 (1045)
T 1k32_A 815 G 815 (1045)
T ss_dssp S
T ss_pred C
Confidence 4
No 378
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00042 Score=60.88 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=49.8
Q ss_pred CceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEec
Q psy2263 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 38 ~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r 96 (232)
.+++|..|.++++|+.+|++.||+|++|||+++.++ .++.+++..+.+.-+.|.+..
T Consensus 415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~~ 471 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFED 471 (539)
T ss_dssp CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEETT
T ss_pred eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEECC
Confidence 478999999999999999999999999999999987 678999988777767766643
No 379
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=70.38 E-value=5.5 Score=35.12 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=30.8
Q ss_pred CccceEEe-ecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCC
Q psy2263 27 GKIGLRVA-AIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGS 73 (232)
Q Consensus 27 ~~lGi~~~-~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~ 73 (232)
.++|+.+. ..++.++|.++.... +++..||+|++|||+++..+
T Consensus 84 a~~Pf~vki~iDG~i~V~dv~~~~----s~I~vGdEIlsING~pv~e~ 127 (583)
T 3dor_A 84 AYLPYTVQKSSDGRFYFVDIMTFS----SEIRVGDELLEVDGAPVQDV 127 (583)
T ss_dssp EECSEEEEECTTSCEEEEEECSSC----CSSCTTCEEEEETTEEHHHH
T ss_pred ccCCeEEEEEECCcEEEEeccccc----cCCCCCCEEEEECCccHHHH
Confidence 35677777 555667776653222 26999999999999998654
No 380
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=33.93 E-value=42 Score=29.61 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=15.2
Q ss_pred CCCCCCEEEEECCeEc
Q psy2263 183 GLLTDHHILEVNGQNV 198 (232)
Q Consensus 183 Gl~~GD~Il~Vng~~~ 198 (232)
++..||.|++|||.++
T Consensus 109 ~I~vGdEIlsING~pv 124 (583)
T 3dor_A 109 EIRVGDELLEVDGAPV 124 (583)
T ss_dssp SSCTTCEEEEETTEEH
T ss_pred CCCCCCEEEEECCccH
Confidence 6999999999999998
No 381
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=26.46 E-value=1.4e+02 Score=22.56 Aligned_cols=70 Identities=26% Similarity=0.290 Sum_probs=45.8
Q ss_pred EEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCH---HHHHHHHhhCCCCeEEEEEec
Q psy2263 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNM---HQVHALLRNCPVNNISIVVRD 96 (232)
Q Consensus 21 l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~---~~~~~~l~~~~~~~v~l~v~r 96 (232)
+.|.-.-+|.+.+...+..+.|..- .+.|+.+|..++++||.++.+... .++...+......++.+..-.
T Consensus 28 ~~~~~~~p~~~~~~~~~~~~~v~~~------~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~ 100 (219)
T 2j3t_D 28 AEKTFSYPLDLLLKLHDERVLVAFG------QRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGR 100 (219)
T ss_dssp EEEEECSSCSSEEEECSSSEEEEEC------CCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEEC
T ss_pred eeeeccCCcceeeeeccceeEEeec------ccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecC
Confidence 4454456688888777777777543 356799999999999999997521 124444543334566665443
No 382
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=26.06 E-value=44 Score=21.85 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=30.9
Q ss_pred hhhcCCCCCCEEEEEC---CeEeecccccCCCccceEEecCcEEE-EccCChhhhCCCCCCCEEEEECCeEc
Q psy2263 131 ASRNGLLTDHHILEVN---GQNVVGLKNDSAGHVGFQFKRGQIIR-LVKESSASRNGLLTDHHILEVNGQNV 198 (232)
Q Consensus 131 a~~~gl~~gd~i~~v~---g~~~~~~~~~~~~~~g~~~~~g~v~~-v~~~s~a~~~Gl~~GD~Il~Vng~~~ 198 (232)
.+.+|+.++..+.-+| |..++..- +.+-. .. +.-+++|++. .++||+|+-+.--.+
T Consensus 8 ldaA~il~~E~V~IvNvnNG~RfeTYv----------I~Ger-SG~I~lNGAAArl-~~~GD~vII~aY~~~ 67 (97)
T 1uhe_A 8 AKLAKLREGMKVEIVDVNNGERFSTYV----------ILGKK-RGEICVNGAAARK-VAIGDVVIILAYASM 67 (97)
T ss_dssp HHHTTCCTTCEEEEEETTTCCEEEEEC----------EEECS-TTCEEEEGGGGGG-CCTTCEEEEEEEEEE
T ss_pred HHhcCCCCCCEEEEEECCCCceEEEEE----------Eeecc-CCeEEEchHHHcc-CCCCCEEEEEECccC
Confidence 3578888888776654 44433221 01001 01 2234566555 599998887765443
No 383
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=25.62 E-value=1.5e+02 Score=20.75 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=31.1
Q ss_pred hhhcCCCCCCEEEEEC---CeEeecccccCCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeEc
Q psy2263 131 ASRNGLLTDHHILEVN---GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNV 198 (232)
Q Consensus 131 a~~~gl~~gd~i~~v~---g~~~~~~~~~~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~ 198 (232)
.+.+|+.++..+.-+| |..++...-..... .|. +.-+++|++. .++||+|+-+.--.+
T Consensus 50 ldaAgIl~~EkV~IvNvnNG~RfeTYvI~GerG------SG~---I~lNGAAArl-~~~GD~VII~sYa~~ 110 (143)
T 1pqh_A 50 LDAAGILENEAIDIWNVTNGKRFSTYAIAAERG------SRI---ISVNGAAAHC-ASVGDIVIIASFVTM 110 (143)
T ss_dssp HHHHTCCTTCEEEEEETTTCCEEEEEEEEECTT------CCC---EECCGGGGGT-CCTTCEEEEEEEEEE
T ss_pred HHHcCCCCCCEEEEEECCCCceEEEEEEEccCC------Cce---EEechHHHcc-CCCCCEEEEEECccC
Confidence 5688999998876665 44333221000000 011 2234566555 699998887764443
No 384
>2vga_A Protein A41, A41; immunomodulator, chemokine binding protein, glycoprotein, VI protein, early protein; 1.9A {Vaccinia virus}
Probab=23.76 E-value=39 Score=23.50 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=29.9
Q ss_pred CeEcCCCCHHHHHHHHHhCCCeEEEEEeCCccccccc
Q psy2263 195 GQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMM 231 (232)
Q Consensus 195 g~~~~~~~~~~~~~~l~~~~~~~~l~v~r~~~~~~~~ 231 (232)
..++.+++|++++.+....--.+.|.+.-+...+.|.
T Consensus 94 tepinsmthddlvklteecivdiylkcevdktkdfmk 130 (207)
T 2vga_A 94 TEPINSMTHDDLVKLTEECIVDIYLKCEVDKTKDFMK 130 (207)
T ss_dssp SSSCCEEEHHHHHHHHHHCEEEEEEEECCCTTSCBCC
T ss_pred cCcccccchHHHHHhhHhheeeeEEEeeecchHHHHh
Confidence 4678999999999999987667888887777766663
No 385
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=22.93 E-value=54 Score=24.96 Aligned_cols=45 Identities=27% Similarity=0.447 Sum_probs=30.3
Q ss_pred hhhCCCCCCCEEEEECCeEcCCCCH---HHHHHHHHh-CCCeEEEEEeC
Q psy2263 179 ASRNGLLTDHHILEVNGQNVVGLKD---KEIREIVEK-APCVINLTIMP 223 (232)
Q Consensus 179 a~~~Gl~~GD~Il~Vng~~~~~~~~---~~~~~~l~~-~~~~~~l~v~r 223 (232)
+++.|+..|..++++||.++.+... +++...|.. ...++.+..-+
T Consensus 52 ~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~ 100 (219)
T 2j3t_D 52 GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGR 100 (219)
T ss_dssp CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEEC
T ss_pred cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecC
Confidence 4678999999999999999987421 244444433 33456665543
No 386
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=20.86 E-value=1.7e+02 Score=18.96 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=29.7
Q ss_pred hhhcCCCCCCEEEEEC---CeEeeccccc-CCCccceEEecCcEEEEccCChhhhCCCCCCCEEEEECCeEc
Q psy2263 131 ASRNGLLTDHHILEVN---GQNVVGLKND-SAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNV 198 (232)
Q Consensus 131 a~~~gl~~gd~i~~v~---g~~~~~~~~~-~~~~~g~~~~~g~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~ 198 (232)
.+.+++.++..+.-+| |..++..--. .++ .|. +.-+++|++. .++||+|+-+.--.+
T Consensus 9 l~aa~i~~~E~V~IvNvnNG~Rf~TYvI~GerG-------SG~---I~lNGAAArl-~~~GD~vII~aY~~~ 69 (96)
T 1vc3_B 9 LDAAGILPFEQVDIYDITNGARLTTYALPGERG-------SGV---IGINGAAAHL-VKPGDLVILVAYGVF 69 (96)
T ss_dssp HHHHTCCTTCEEEEEETTTCCEEEEECEEECTT-------TTC---EEEEGGGGGT-CCTTCEEEEEEEEEE
T ss_pred HHHcCCCCCCEEEEEECCCCceEEEEEEEccCC-------CCe---EEEchHHHcc-CCCCCEEEEEECccC
Confidence 3567888888766654 4433322100 000 011 1123555554 699998887765443
No 387
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=20.11 E-value=1.8e+02 Score=19.47 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=30.1
Q ss_pred hhhcCCCCCCEEEEEC---CeEeecccccCCCccceEEecC-cEEEEccCChhhhCCCCCCCEEEEECCeEc
Q psy2263 131 ASRNGLLTDHHILEVN---GQNVVGLKNDSAGHVGFQFKRG-QIIRLVKESSASRNGLLTDHHILEVNGQNV 198 (232)
Q Consensus 131 a~~~gl~~gd~i~~v~---g~~~~~~~~~~~~~~g~~~~~g-~v~~v~~~s~a~~~Gl~~GD~Il~Vng~~~ 198 (232)
.+.+|+.++..+.-+| |..++..--.. .+| -+ +.-+++|++. .++||+|+-+.--.+
T Consensus 36 l~aA~i~~~E~V~I~NvnNG~Rf~TYvI~G--------erGSg~--I~lNGAAAr~-~~~GD~vII~ay~~~ 96 (114)
T 3oug_A 36 MKQANIIENEKVQVVNLNNGERLETYVIKG--------EPNSKT--IALNGPAARR-CEIGDQLFIISYTQV 96 (114)
T ss_dssp HHHTTCCTTBEEEEEETTTCCEEEEEEEEE--------CTTSCC--EEEEGGGGGG-CCTTCEEEEEEEEEE
T ss_pred HHHcCCCcCCEEEEEECCCCceEEEEEEEc--------cCCCCE--EEeCCHHHhc-cCCCCEEEEEECCcC
Confidence 5678899998876665 44333221000 000 01 1223555554 599998887654433
Done!