RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2263
(232 letters)
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 138 bits (350), Expect = 1e-41
Identities = 81/138 (58%), Positives = 106/138 (76%)
Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHA 80
LCKD GKIGLR+ +I G+FV LVQ SPA+LVGLRFGDQ+LQ+NG+ AG + + H
Sbjct: 10 LCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHK 69
Query: 81 LLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDH 140
+L+ I++ +RDRPFER +T+HKDS GHVGF FK G+I +VK+SSA+RNGLLT+H
Sbjct: 70 VLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH 129
Query: 141 HILEVNGQNVVGLKNDSA 158
+I E+NGQNV+GLK+
Sbjct: 130 NICEINGQNVIGLKDSQI 147
Score = 92.6 bits (230), Expect = 7e-24
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 36/161 (22%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKND 156
R V L KD G +G + K + + S AS GL +L++NG+N G +D
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 157 SA--------------------------------GHVGFQFKRGQIIRLVKESSASRNGL 184
A GHVGF FK G+I +VK+SSA+RNGL
Sbjct: 66 KAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 185 LTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225
LT+H+I E+NGQNV+GLKD +I +I+ + V+ +TIMP++
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF 166
Score = 43.3 bits (102), Expect = 1e-05
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 151 VGLKNDSAGHVGFQFKRGQ----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
V L D G +G + K + + S AS GL +L++NG+N G +
Sbjct: 8 VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKA 67
Query: 207 REIVEKAPC-VINLTIMPSYVYHHMMN 232
+++++A I +TI +
Sbjct: 68 HKVLKQAFGEKITMTIRDRPFERTITM 94
Score = 42.9 bits (101), Expect = 2e-05
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 13 YHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAG 72
+ + KD G +G + + S AA GL I ++NG+ V G
Sbjct: 86 RPFERTITMHKDSTGHVGFIFKNGKITS----IVKDSSAARNGLLTEHNICEINGQNVIG 141
Query: 73 SNMHQVHALLRNCPVNNISIVVRD 96
Q+ +L ++I +
Sbjct: 142 LKDSQIADILSTSG-TVVTITIMP 164
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 114 bits (286), Expect = 3e-30
Identities = 45/235 (19%), Positives = 80/235 (34%), Gaps = 56/235 (23%)
Query: 5 YPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEG-----VFVCLVQEGSPAALVG-LRF 58
+ +L L K +G+ V G V + + G PAA G L
Sbjct: 194 DDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSI 253
Query: 59 GDQILQVNGKTVAGSNMHQVHALLRNCP--VNNISIVVRDRPFERNVTLHKDSAGHVGFQ 116
GDQI+ +NG ++ G + +++ +V P + D +GF
Sbjct: 254 GDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFS 313
Query: 117 FKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKE 176
+ G I L++ A R G+ VG
Sbjct: 314 VQNGIICSLMRGGIAERGGV-----------------------RVG-------------- 336
Query: 177 SSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMM 231
H I+E+NGQ+VV ++I + + + I++ MP+ ++ +
Sbjct: 337 -----------HRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLT 380
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 91.2 bits (227), Expect = 3e-24
Identities = 41/76 (53%), Positives = 59/76 (77%)
Query: 150 VVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREI 209
+ + DS GHVGF FK G+I +VK+SSA+RNGLLT+H+I E+NGQNV+GLKD +I +I
Sbjct: 7 TITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 66
Query: 210 VEKAPCVINLTIMPSY 225
+ + V+ +TIMP++
Sbjct: 67 LSTSGTVVTITIMPAF 82
Score = 80.4 bits (199), Expect = 3e-20
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 12/77 (15%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGH 160
R +T+HKDS GHVGF FK G+I +VK+SSA+RNGLLT+H+I E+NGQNV+GLK+
Sbjct: 6 RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDS---- 61
Query: 161 VGFQFKRGQIIRLVKES 177
QI ++ S
Sbjct: 62 --------QIADILSTS 70
Score = 51.1 bits (123), Expect = 4e-09
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHA 80
+ KD G +G + + + + S AA GL I ++NG+ V G Q+
Sbjct: 10 MHKDSTGHVGFIF----KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65
Query: 81 LLRNCPVNNISIVV 94
+L ++I +
Sbjct: 66 ILSTSG-TVVTITI 78
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 82.1 bits (203), Expect = 1e-20
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 140 HHILEV--NGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQN 197
HH LE N V+ + D +GF + G I L++ A R G+ H I+E+NGQ+
Sbjct: 3 HHHLETMGNVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQS 62
Query: 198 VVGLKDKEIREIVEKAPCVINLTIMPS 224
VV ++I I+ A I++ MP+
Sbjct: 63 VVATPHEKIVHILSNAVGEIHMKTMPA 89
Score = 66.3 bits (162), Expect = 1e-14
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 79 HALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLT 138
H + N++ V+ RP D +GF + G I L++ A R G+
Sbjct: 1 HHHHHLETMGNVTTVLIRRP---------DLRYQLGFSVQNGIICSLMRGGIAERGGVRV 51
Query: 139 DHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSAS 180
H I+E+NGQ+VV ++ +I+ ++ +
Sbjct: 52 GHRIIEINGQSVVATPHE------------KIVHILSNAVGE 81
Score = 47.8 bits (114), Expect = 7e-08
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 23 KDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
D+ ++G V + +C + G A G+R G +I+++NG++V + ++ +L
Sbjct: 20 PDLRYQLGFSV----QNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 75
Query: 83 RNCP 86
N
Sbjct: 76 SNAV 79
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 74.7 bits (183), Expect = 3e-17
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 26 HGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
+ +G++V V EG PA + GL+ GD+I+QVNG + Q L
Sbjct: 52 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKR 111
Query: 86 PVNNISIVVRDRPFERNVTLHKDSAGHV 113
+ ++V + ++ V S V
Sbjct: 112 SEEVVRLLVTRQSLQKAVQQSMLSETEV 139
Score = 34.2 bits (78), Expect = 0.013
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 123 IRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQ---FKRGQIIRLVKE-SS 178
+ + K L G ++ G + F +G + V E
Sbjct: 27 VEIHKLRQGENLIL----------GFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGP 76
Query: 179 ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214
A GL I++VNG ++ + + R+ + K
Sbjct: 77 AEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRS 112
Score = 32.7 bits (74), Expect = 0.037
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 111 GHVGFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ 169
+ +G + V E A GL I++VNG ++ + +D A + +
Sbjct: 56 PFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA-RKRLTKRSEE 114
Query: 170 IIRLV 174
++RL+
Sbjct: 115 VVRLL 119
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 75.2 bits (185), Expect = 7e-17
Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 34/207 (16%)
Query: 21 LCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH 76
L K +GL V+ + V +++G AA L GD I VNG +A
Sbjct: 13 LMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHD 72
Query: 77 QVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGL 136
++ +LL+N + + V ++ R + L KE +
Sbjct: 73 EIISLLKNVG-ERVVLEVEYELPPVSIQGS--------SVMFRTVEVTLHKEGN----TF 119
Query: 137 LTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLL-TDHHILEVN 194
G + G +D R +I + A R G + +L V+
Sbjct: 120 ----------GFVIRGGAHDDRNK-----SRPVVITCVRPGGPADREGTIKPGDRLLSVD 164
Query: 195 GQNVVGLKDKEIREIVEKAPCVINLTI 221
G ++G E I+++ L I
Sbjct: 165 GIRLLGTTHAEAMSILKQCGQEATLLI 191
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 74.5 bits (183), Expect = 1e-16
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH--QVHALLRNCPVNNISIVVR 95
G + V A L+ D I +NG + +M +VH L +++ V
Sbjct: 46 GCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVF 105
Query: 96 DRPFER----NVTLHKDSAGHVGFQFKRGQ----IIRLVKESSASRNGLL-TDHHILEVN 146
NV L K + +G + I L++ + L I + N
Sbjct: 106 RADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFN 165
Query: 147 GQNVVGLKNDSAGHV 161
G + GL +
Sbjct: 166 GDALEGLPFQVCYAL 180
Score = 60.7 bits (147), Expect = 1e-11
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 9 EDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNG 67
D + + L K ++GL ++ G + + +G + L+ GD I + NG
Sbjct: 107 ADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNG 166
Query: 68 KTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
+ G +AL + +S+ V
Sbjct: 167 DALEGLPFQVCYALFKGAN-GKVSMEVTRPK 196
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 73.7 bits (181), Expect = 2e-16
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 27/171 (15%)
Query: 15 QMTKLFLCKDIHGKIGLRVA-------AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVN 66
+ T++ L D G+++ + + ++ SPA G L+ GD+++ +N
Sbjct: 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN 65
Query: 67 GKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFER---------NVTLHKDSAGHVGFQF 117
G S + + LLR+ + + + + +V L K + +G
Sbjct: 66 GIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITI 125
Query: 118 KRGQ---------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKNDSA 158
I + K S A R G L +L ++ + + A
Sbjct: 126 SSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDA 176
Score = 50.5 bits (121), Expect = 5e-08
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ + + +++GS A G L GD++L ++ + +M +L+ C + + + +R
Sbjct: 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRK 193
Query: 97 RP 98
Sbjct: 194 DE 195
Score = 32.8 bits (75), Expect = 0.049
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 170 IIRLVKESSASRNGLLT--DHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I + +S A R G+L D ++ +NG +E +++ + +T+
Sbjct: 40 ISYIEADSPAERCGVLQIGDR-VMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 69.8 bits (171), Expect = 6e-15
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 20/152 (13%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G +F+ + G AA G LR D IL VN V L+
Sbjct: 22 IAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 81
Query: 84 NCPVNNISIVVRDRP----FERNVTLHKDSAGHVGFQFKRGQ------------IIRLVK 127
+ + + V R + L K G GF G + ++++
Sbjct: 82 EAG-SIVRLYVMRRKPPAEKVMEIKLIKGPKGL-GFSIAGGVGNQHIPGDNSIYVTKIIE 139
Query: 128 ESSASRNGLL-TDHHILEVNGQNVVGLKNDSA 158
+A ++G L IL VN + + ++ A
Sbjct: 140 GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 171
Score = 35.5 bits (82), Expect = 0.007
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228
I +++ +A+++G L + IL VN +V + E +++A ++ L +M
Sbjct: 39 ITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPA 98
Query: 229 HMM 231
+
Sbjct: 99 EKV 101
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 66.7 bits (163), Expect = 8e-15
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 23 KDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
G + G+FV V+ GSPA L+ D+I+ +N + ++ + +
Sbjct: 13 PGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAM 72
Query: 83 RNCPVN-NISIVVR 95
++ + VR
Sbjct: 73 AKAQETGHLVMDVR 86
Score = 40.9 bits (96), Expect = 3e-05
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 150 VVGLKNDSAGHVGFQFK---RGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKE 205
+ + GF K G + V+ S A + L D I+ +N KE
Sbjct: 8 SINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKE 67
Query: 206 IREIVEKAPCVINLTI 221
E + KA +L +
Sbjct: 68 WEEAMAKAQETGHLVM 83
Score = 39.7 bits (93), Expect = 6e-05
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 100 ERNVTLHKDSAGHVGFQF-----KRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGL 153
+ +++++ + F F G + V+ S A + L D I+ +N
Sbjct: 4 DMRISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYN 63
Query: 154 KNDSA 158
+
Sbjct: 64 DSKEW 68
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 65.9 bits (161), Expect = 2e-14
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR +G + ++ GSPA GL+ D ++ VNGK+V + V ++R +
Sbjct: 23 LRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQT 81
Query: 91 SIVVRDRPFERNVTLHKDSAG 111
+++V D+ E +L S+G
Sbjct: 82 TLLVLDKEAESIYSLSGPSSG 102
Score = 42.0 bits (99), Expect = 1e-05
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 101 RNVTLHKDSAGH----VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
R V + K S G+ ++GQII+ ++ S A GL + ++ VNG++V L
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 65
Score = 41.6 bits (98), Expect = 1e-05
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 162 GFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLT 220
++GQII+ ++ S A GL + ++ VNG++V L + E++ K L
Sbjct: 25 AGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL 84
Query: 221 IMP 223
++
Sbjct: 85 VLD 87
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 66.0 bits (161), Expect = 3e-14
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ V V + A+L G + GD I+ + G + +V LL++ + + V
Sbjct: 35 NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV- 93
Query: 97 RPFERNVTLHKDSAGHVG 114
+ ++H S G
Sbjct: 94 SLLDSTSSMHNKSGPSSG 111
Score = 38.6 bits (90), Expect = 2e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 101 RNVTLHKDSAGHVGFQFKRG---QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDS 157
R + + +GF + Q+ L SAS G +I+ + G + L
Sbjct: 17 RGIHFTVEEGD-LGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSE 75
Query: 158 A 158
Sbjct: 76 V 76
Score = 33.6 bits (77), Expect = 0.015
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 159 GHVGFQFK-RG----QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
F RG Q+ L SAS G +I+ + G + L E+ ++++
Sbjct: 24 EEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSF 83
Query: 214 P 214
Sbjct: 84 G 84
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 65.5 bits (160), Expect = 3e-14
Identities = 13/79 (16%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L+ +GV++ + A G+ D +++VNG+ V ++ +V ++ + +
Sbjct: 25 LKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRV 83
Query: 91 SIVVRDRPFERNVTLHKDS 109
++ D+ ++ K
Sbjct: 84 MFLLVDKETDKRHVEQKSG 102
Score = 44.3 bits (105), Expect = 2e-06
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
R L K+ + GF Q K+G + + A R G+L D H++EVNG+NV
Sbjct: 10 RLCYLVKEGGSY-GFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDA 67
Score = 40.9 bits (96), Expect = 3e-05
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 161 VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219
Q K+G + + A R G+L D H++EVNG+NV +E+ E V+K+ +
Sbjct: 26 KTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMF 85
Query: 220 TI 221
+
Sbjct: 86 LL 87
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 65.0 bits (159), Expect = 3e-14
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR +G + ++ GSPA GL+ D ++ VNGK+V + V ++R +
Sbjct: 22 LRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQT 80
Query: 91 SIVVRDRPFER 101
+++V D+ ER
Sbjct: 81 TLLVLDKELER 91
Score = 42.7 bits (101), Expect = 5e-06
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 101 RNVTLHKDSAGH----VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
R V + K S G+ ++GQII+ ++ S A GL + ++ VNG++V L
Sbjct: 7 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 64
Score = 41.9 bits (99), Expect = 1e-05
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 161 VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219
++GQII+ ++ S A GL + ++ VNG++V L + E++ K L
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 82
Query: 220 TIMP 223
++
Sbjct: 83 LVLD 86
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 64.0 bits (156), Expect = 2e-13
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G++V V GS A GL +GDQ+L+ NG + + Q ++ + I+I+ +
Sbjct: 41 KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQY 99
Query: 97 RPFERNVTLHK---DSAG 111
P ++ H S+G
Sbjct: 100 NPHVHQLSSHSRSGPSSG 117
Score = 43.2 bits (102), Expect = 6e-06
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKN 155
R+V + K S +G G+ + ++ S A + GL +LE NG N+
Sbjct: 21 RHVKVQKGSEP-LGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATE 79
Query: 156 DSA 158
A
Sbjct: 80 QQA 82
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDK 204
V ++ S +G G+ + ++ S A + GL +LE NG N+ ++
Sbjct: 22 HVKVQKGSEP-LGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQ 80
Query: 205 EIREIVEKAPCVINLTIMPSYVYHHMMN 232
+ R I+ + I + + H + +
Sbjct: 81 QARLIIGQQCDTITILAQYNPHVHQLSS 108
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 62.8 bits (153), Expect = 3e-13
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 14 HQMTKLFLCKDIHGK---IGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTV 70
++ K+ L KD + + + +GV+V ++ P L GL+ D++LQVN
Sbjct: 5 VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRT 64
Query: 71 AGSNMHQVHALLRNCPVNNISIVVRDRP 98
+ V L+ N + +V+ P
Sbjct: 65 RDFDCCLVVPLIAESG-NKLDLVISRNP 91
Score = 41.6 bits (98), Expect = 1e-05
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 96 DRPFE-RNVTLHKDSAGHVGFQF-------KRGQIIRLVKE-SSASRNGLLTDHHILEVN 146
P E VTL+KDS F F ++G ++ ++ GL +L+VN
Sbjct: 2 PTPVELHKVTLYKDSGME-DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVN 60
Query: 147 GQNVVGLKNDSA 158
Sbjct: 61 HVRTRDFDCCLV 72
Score = 37.7 bits (88), Expect = 3e-04
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 166 KRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
++G ++ ++ GL +L+VN + ++ ++ ++L I
Sbjct: 31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 62.0 bits (151), Expect = 5e-13
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 30 GLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89
+ G F+ V G PA G++ GD+++ V G++V G + + ++ +
Sbjct: 22 EEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQG-SC 80
Query: 90 ISIVVRDRPFERNVTL 105
+S+ V D +R ++
Sbjct: 81 VSLTVVDPEADRETSV 96
Score = 43.9 bits (104), Expect = 2e-06
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 159 GHVGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVI 217
G + GQ + V A + G+ ++ V G++V GL +E ++ +
Sbjct: 22 EEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV 81
Query: 218 NLTIMP 223
+LT++
Sbjct: 82 SLTVVD 87
Score = 41.9 bits (99), Expect = 1e-05
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 101 RNVTLHKDSAG-------HVGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVG 152
R + L K G G + GQ + V A + G+ ++ V G++V G
Sbjct: 5 RCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64
Query: 153 L 153
L
Sbjct: 65 L 65
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 62.2 bits (151), Expect = 9e-13
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L G F+ V SPA GLR D+I++VNG + G V + +R +
Sbjct: 26 LHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DET 84
Query: 91 SIVVRDRPFERNVTLHKDS 109
++V DR + +
Sbjct: 85 KLLVVDRETDEFFKKCRVI 103
Score = 41.4 bits (97), Expect = 3e-05
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
R T+ K +G+ GF + K GQ IR V S A +GL I+EVNG + G
Sbjct: 11 RLCTMKKGPSGY-GFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Score = 39.5 bits (92), Expect = 1e-04
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 161 VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219
+ K GQ IR V S A +GL I+EVNG + G + ++ + L
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86
Query: 220 TIMP 223
++
Sbjct: 87 LVVD 90
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 61.1 bits (149), Expect = 9e-13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G F+ VQ+G PA L GL D I++VNG V +V +++ N++++V
Sbjct: 26 LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG-KNVTLLVCG 84
Query: 97 RPFE 100
+ +
Sbjct: 85 KKAQ 88
Score = 41.5 bits (98), Expect = 1e-05
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 166 KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
G I+ V++ A GL + I+EVNG NV+ +++ + ++ + + L +
Sbjct: 26 LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGK 85
Query: 225 YVY 227
Sbjct: 86 KAQ 88
Score = 40.7 bits (96), Expect = 2e-05
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
+ L K G+ GF + G I+ V++ A GL + I+EVNG NV+
Sbjct: 5 KLCRLAKGENGY-GFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 62
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 60.8 bits (148), Expect = 1e-12
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L G F+ V SPA GLR D+I++VNG + G V + +R +
Sbjct: 26 LHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DET 84
Query: 91 SIVVRDRP 98
++V DR
Sbjct: 85 KLLVVDRE 92
Score = 43.5 bits (103), Expect = 4e-06
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 101 RNVTLHKDSAGH----VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
R T+ K +G+ + K GQ IR V S A +GL I+EVNG + G
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Score = 42.3 bits (100), Expect = 8e-06
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 161 VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219
+ K GQ IR V S A +GL I+EVNG + G + ++ + L
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86
Query: 220 TIMPSYVYHH 229
++
Sbjct: 87 LVVDRETDEF 96
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 60.8 bits (148), Expect = 2e-12
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
V V V+ G A G++ GD+I++VNG V S+ +V L+++ +++ +
Sbjct: 28 DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGA--YVALTLLG 85
Query: 97 RP 98
Sbjct: 86 SS 87
Score = 42.3 bits (100), Expect = 7e-06
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 100 ERNVTLHKDSAGHVGF--QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
+R V + KD G GF R +++ V+ A + G+ I++VNG V
Sbjct: 9 QRCVIIQKDQHG-FGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS 65
Score = 36.9 bits (86), Expect = 7e-04
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 159 GHVGFQF----KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
GF F R +++ V+ A + G+ I++VNG V E+ ++++
Sbjct: 17 DQHGFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSG 76
Query: 214 PCVINLTIMPS 224
V + S
Sbjct: 77 AYVALTLLGSS 87
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 60.8 bits (148), Expect = 2e-12
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
V V G A G+R GD+IL+VNG V G+ QV L+R + + V
Sbjct: 44 LQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGE-KELILTVLSVE 102
Query: 99 FERNV 103
E V
Sbjct: 103 SESKV 107
Score = 40.0 bits (94), Expect = 6e-05
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 162 GFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLT 220
G + Q + V A R G+ ILEVNG NV G K++ +++ + LT
Sbjct: 38 GELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILT 97
Query: 221 IMP 223
++
Sbjct: 98 VLS 100
Score = 36.2 bits (84), Expect = 0.001
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 18/71 (25%)
Query: 101 RNVTLHKDSAG-----------------HVGFQFKRGQIIRLVKESS-ASRNGLLTDHHI 142
R V + K +G G + Q + V A R G+ I
Sbjct: 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRI 67
Query: 143 LEVNGQNVVGL 153
LEVNG NV G
Sbjct: 68 LEVNGVNVEGA 78
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 61.5 bits (149), Expect = 2e-12
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
G + +FV V+EG PA GL GD+I++VNG++V G QV AL++N
Sbjct: 50 GGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSD 109
Query: 87 VNNISIVVRDRP 98
+ + V +
Sbjct: 110 -TTLELSVMPKD 120
Score = 43.4 bits (102), Expect = 6e-06
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGH 160
+ VTL + S G GF + + ES+ + ++ +N +
Sbjct: 10 KTVTLKRTSQG-FGFTLRHFIVYP--PESAIQFSYKDEENGNRGGKQRNRL--------- 57
Query: 161 VGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219
+ ++ VKE A GL T I++VNG++V+G ++ +++ + + L
Sbjct: 58 ---EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLEL 114
Query: 220 TIMP 223
++MP
Sbjct: 115 SVMP 118
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 59.8 bits (145), Expect = 5e-12
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR+ +G + +++EGSPA GL GD++L++NG V QV L+R N++
Sbjct: 31 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 89
Query: 91 SIVVRDRPFERNVTLHK 107
+++V D ++
Sbjct: 90 TLLVLDGDSYEKAVKNQ 106
Score = 42.8 bits (101), Expect = 7e-06
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
R L K + GF + G +IR+++E S A + GLL +L +NG V
Sbjct: 15 RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE- 73
Query: 155 NDSAGHVGFQFKRGQIIRLVKES 177
+ Q++ LV++S
Sbjct: 74 -----------EHAQVVELVRKS 85
Score = 40.9 bits (96), Expect = 4e-05
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 166 KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
G +IR+++E S A + GLL +L +NG V + ++ E+V K+ + L ++
Sbjct: 37 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
Query: 225 YVYH 228
Y
Sbjct: 97 DSYE 100
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 59.4 bits (144), Expect = 6e-12
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
V V V G PA GL+ D +LQ+N + V ++ +R+CP + I ++V
Sbjct: 35 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWR 93
Query: 97 RP 98
Sbjct: 94 VS 95
Score = 42.0 bits (99), Expect = 1e-05
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 100 ERNVTLHKDSAGHVGFQFK--RGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLK 154
+ +T+ + G GF ++ V A R GL +L++N + V K
Sbjct: 16 KLQITIRRGKDGF-GFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 72
Score = 41.3 bits (97), Expect = 2e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 159 GHVGFQF----KRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
G GF F ++ V A R GL +L++N + V K E+ +
Sbjct: 24 GKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 83
Query: 214 PCVINLTI 221
P I L +
Sbjct: 84 PSEIILLV 91
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 58.9 bits (143), Expect = 6e-12
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
V V V G PA GL+ D +LQ+N + V ++ +R+CP + I ++V
Sbjct: 25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRMV 83
Score = 41.2 bits (97), Expect = 2e-05
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 101 RNVTLHKDSAGHVGFQFK--RGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLK 154
R +T+ + G GF ++ V A R GL +L++N + V K
Sbjct: 5 RQITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 60
Score = 40.0 bits (94), Expect = 5e-05
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 159 GHVGFQFK----RGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
G GF F ++ V A R GL +L++N + V K E+ +
Sbjct: 12 GKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 71
Query: 214 PCVINLTIM 222
P I L +
Sbjct: 72 PSEIILLVW 80
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 59.4 bits (144), Expect = 6e-12
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
G+F+ V+ GS +A VGL GDQI++VNG + + + +L++ ISIV
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGR 101
Query: 99 FERNVTLHKDSAG 111
S+G
Sbjct: 102 ELFMTDRSGPSSG 114
Score = 39.4 bits (92), Expect = 1e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVG 152
E+ V + + +G G I + S ++ GL I+EVNG +
Sbjct: 16 EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSN 75
Query: 153 LKNDSA 158
L + A
Sbjct: 76 LDHKEA 81
Score = 32.1 bits (73), Expect = 0.053
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVI 217
I + S ++ GL I+EVNG + L KE +++ + +
Sbjct: 45 ISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLT 92
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 61.7 bits (149), Expect = 8e-12
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L G F+ V SPA GLR D+I++VNG + G V + +R +
Sbjct: 26 LHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DET 84
Query: 91 SIVVRDRPFERNVTLHKDS 109
++V DR + +
Sbjct: 85 KLLVVDRETDEFFKKCRVI 103
Score = 43.6 bits (102), Expect = 1e-05
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 101 RNVTLHKDSAGHVGFQF-----KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
R T+ K +G+ GF K GQ IR V S A +GL I+EVNG + G +
Sbjct: 11 RLCTMKKGPSGY-GFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 155 NDSA 158
+
Sbjct: 70 HGDV 73
Score = 41.3 bits (96), Expect = 8e-05
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 166 KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
K GQ IR V S A +GL I+EVNG + G + ++ + L ++
Sbjct: 32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 58.4 bits (142), Expect = 8e-12
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ V GSPA VGLR GDQIL VN V ++ V L+ C + +V+ +
Sbjct: 22 QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAE 80
Query: 97 RP 98
Sbjct: 81 GV 82
Score = 42.6 bits (101), Expect = 5e-06
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 98 PFERNVTLHKDSAGHVGF--QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
P R+V + + AG+ GF + ++ V S A GL IL VN NV
Sbjct: 1 PRVRSVEVARGRAGY-GFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS 59
Query: 155 NDSA 158
++
Sbjct: 60 HEDV 63
Score = 39.1 bits (92), Expect = 8e-05
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 159 GHVGFQF----KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
G G+ F + ++ V S A GL IL VN NV +++ +++ K
Sbjct: 11 GRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC 70
Query: 214 PCVINLTIMPS 224
V+++ I
Sbjct: 71 SGVLHMVIAEG 81
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 58.5 bits (142), Expect = 1e-11
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L G ++ V GSPAA GLR D++++VNG+ V G +V A ++ +
Sbjct: 21 LHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE-DEA 79
Query: 91 SIVVRDR 97
++V
Sbjct: 80 RLLVVGP 86
Score = 41.9 bits (99), Expect = 1e-05
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLK 154
R L K G+ GF + + GQ IR V S A+R+GL ++EVNGQNV GL+
Sbjct: 6 RLCHLRKGPQGY-GFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLR 64
Score = 41.5 bits (98), Expect = 2e-05
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 166 KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
+ GQ IR V S A+R+GL ++EVNGQNV GL+ E+ ++ L ++
Sbjct: 27 RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 85
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 58.6 bits (142), Expect = 1e-11
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
LR+ +G + +++EGSPA GL GD++L++NG V QV L+R N++
Sbjct: 19 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 77
Query: 91 SIVVRDRPFERNVTLHK 107
+++V D ++
Sbjct: 78 TLLVLDGDSYEKAVKNQ 94
Score = 41.7 bits (98), Expect = 2e-05
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
R L K + GF + G +IR+++E S A + GLL +L +NG V
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
Score = 41.3 bits (97), Expect = 2e-05
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 166 KRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
G +IR+++E S A + GLL +L +NG V + ++ E+V K+ + L ++
Sbjct: 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
Query: 225 YVYH 228
Y
Sbjct: 85 DSYE 88
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 58.7 bits (142), Expect = 2e-11
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVR 95
G+FV V E SPAA GL GDQIL+VN + L + P ++I+ +
Sbjct: 50 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 109
Query: 96 DRP 98
+
Sbjct: 110 KKK 112
Score = 38.3 bits (89), Expect = 4e-04
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 72 GSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQ-----IIRLV 126
GS+ H H + RP + V K + VG + G + ++
Sbjct: 2 GSSHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDS--VGLRLAGGNDVGIFVAGVL 59
Query: 127 KESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLV 174
++S A++ GL IL VN + + + A +G+ + ++
Sbjct: 60 EDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107
Score = 34.4 bits (79), Expect = 0.008
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY---V 226
+ ++++S A++ GL IL VN + + +E + P +TI+ V
Sbjct: 55 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 114
Query: 227 YHHMMN 232
Y ++
Sbjct: 115 YRRIVE 120
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 62.2 bits (150), Expect = 2e-11
Identities = 32/153 (20%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G +F+ + G AA G LR D IL VN V L+
Sbjct: 76 IAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 135
Query: 84 NCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQF--------------KRGQIIRLVKES 129
V+R +P V K G G F + ++++
Sbjct: 136 EAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGG 195
Query: 130 SASRNGLL-TDHHILEVNGQNVVGLKNDSAGHV 161
+A ++G L IL VN + + ++ A
Sbjct: 196 AAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAA 228
Score = 54.5 bits (130), Expect = 7e-09
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 9 EDMKYHQMTKLFLCKDIHGKIGLRVAAI--HEGVFVCLVQEGSPAALVG-LRFGDQILQV 65
E+ + ++ + + G +G + EG+F+ + G PA L G LR GDQIL V
Sbjct: 301 EEDIPREPRRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSV 359
Query: 66 NGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
NG + ++ Q L+N ++I+ + +P
Sbjct: 360 NGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP 391
Score = 49.1 bits (116), Expect = 5e-07
Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 24/229 (10%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G +G + ++V + EG A G L+ GD+IL VN + A L+
Sbjct: 171 IAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 230
Query: 84 NCPVNNISIVVRDRPFERNVT-----LHKDSAGHVGFQFKRGQIIRLVKESSAS------ 132
N V + + + + + H+ + + ++ +
Sbjct: 231 NTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRR 290
Query: 133 ---RNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNG 183
L + + +V + + +GF G+ I ++ A +G
Sbjct: 291 YSPVAKDLLGEEDIPREPRRIVIHRGSTG--LGFNIVGGEDGEGIFISFILAGGPADLSG 348
Query: 184 LLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMM 231
L IL VNG ++ ++ ++ A + + +
Sbjct: 349 ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 397
Score = 41.0 bits (95), Expect = 2e-04
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYH 228
I +++ +A+++G L + IL VN +V + E +++A ++ L +M
Sbjct: 93 ITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPA 152
Query: 229 HMM 231
+
Sbjct: 153 EKV 155
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 57.7 bits (140), Expect = 2e-11
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 21 LCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
+ K G++G V E G+FV V+EGS A GL GD+I +VNG ++ + M
Sbjct: 16 VEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGS 75
Query: 78 VHALLRNCPVNNISIVVRDRP 98
+L + + + ++VR
Sbjct: 76 AVKVLTSS--SRLHMMVRRMG 94
Score = 44.3 bits (105), Expect = 2e-06
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153
+V + K AG +GF + G + ++ + SSA R GL I EVNG ++
Sbjct: 12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLEST 71
Query: 154 KNDSAGHVGFQFKRGQIIRLV 174
SA V + ++
Sbjct: 72 TMGSAVKV---LTSSSRLHMM 89
Score = 34.6 bits (80), Expect = 0.004
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVGLK 202
V ++ AG +GF + G + ++ + SSA R GL I EVNG ++
Sbjct: 13 SVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT 72
Query: 203 DKEIREIVEKAPCV 216
+++ + +
Sbjct: 73 MGSAVKVLTSSSRL 86
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 57.8 bits (140), Expect = 2e-11
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
++ + + + GS AA L GD IL ++G ++ + + +
Sbjct: 28 NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDR 86
Query: 97 RP 98
Sbjct: 87 AE 88
Score = 37.3 bits (87), Expect = 5e-04
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ S A+ L IL ++G + + ++ ++ A + L I
Sbjct: 32 VITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI 84
Score = 33.5 bits (77), Expect = 0.012
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
I R+ S A+ L IL ++G + + A
Sbjct: 32 VITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADA 69
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 57.7 bits (140), Expect = 2e-11
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ + V GS AAL L GD I +NG++ + ++ C +++++ V
Sbjct: 31 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSS 89
Query: 97 RP 98
P
Sbjct: 90 GP 91
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ S A+ L I +NG++ + E + ++ + L++
Sbjct: 35 TISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 100 ERNVTLHKDSAGHVGFQFK-RG--------QIIRLVKESSASRNGLLTDHHILEVNGQNV 150
+VTL S + F+ G I R+ S A+ L I +NG++
Sbjct: 9 PHSVTLRGPS----PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGEST 64
Query: 151 VGLKNDSA 158
+ + A
Sbjct: 65 ELMTHLEA 72
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 57.3 bits (139), Expect = 2e-11
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
L G ++ LV+ GSPA GL GD++++VNG+ V QV + +R N +
Sbjct: 20 LHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAV 78
Query: 91 SIVVRDR 97
++V D
Sbjct: 79 RLLVVDP 85
Score = 42.7 bits (101), Expect = 6e-06
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 95 RDRPFERNVTLHKDSAGH----VGFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQN 149
R P R L K G+ G + K GQ IRLV+ S A + GLL ++EVNG+N
Sbjct: 1 RMLP--RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGEN 58
Query: 150 VVGL 153
V
Sbjct: 59 VEKE 62
Score = 41.5 bits (98), Expect = 1e-05
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 161 VGFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINL 219
G + K GQ IRLV+ S A + GLL ++EVNG+NV +++ + A + L
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL 80
Query: 220 TIMPSYVYHHM 230
++ +
Sbjct: 81 LVVDPETDEQL 91
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 56.9 bits (138), Expect = 4e-11
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVH 79
L K ++GL ++ G + + +G + L+ GD I + NG + G +
Sbjct: 14 LMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSY 73
Query: 80 ALLRNCPVNNISIVVRDRP 98
AL + V R +P
Sbjct: 74 ALFKGANGKVSMEVTRPKP 92
Score = 40.8 bits (96), Expect = 2e-05
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 95 RDRPFERNVTLHKDSAGHVGFQFKRGQ----IIRLVKESSASRNGLL-TDHHILEVNGQN 149
R+ + NV L K + +G + I L++ + L I + NG
Sbjct: 4 RNSLEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 150 VVGLKNDSAGHV 161
+ GL + +
Sbjct: 64 LEGLPFQVSYAL 75
Score = 36.9 bits (86), Expect = 6e-04
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 151 VGLKNDSAGHVGFQFKRGQ----IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKE 205
V L + +G + I L++ + L I + NG + GL +
Sbjct: 12 VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71
Query: 206 IREIVEKAPCVINLTI 221
+ + A +++ +
Sbjct: 72 SYALFKGANGKVSMEV 87
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 57.3 bits (138), Expect = 4e-11
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 30 GLRVAAIHE----GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G ++++ E ++V V+E A+ GL+ GD+IL++N + N + L
Sbjct: 32 GFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP 91
Query: 86 PVNNISIVVRDRP 98
+ ++VR P
Sbjct: 92 SL---GLLVRTYP 101
Score = 34.2 bits (78), Expect = 0.009
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
G ++ ++ D + + + + AS+ GL ILE+N + L +
Sbjct: 32 GFSLSSVEEDGIRRL-------YVNSVKETGLASKKGLKAGDEILEINNRAADALNSSML 84
Query: 207 REIVEKAPCVINLTIMPS 224
++ + + + + P
Sbjct: 85 KDFLSQPSLGLLVRTYPE 102
Score = 33.5 bits (76), Expect = 0.014
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 101 RNVTLHKDSAGHVGFQF----------KRGQIIRLVKESSASRNGLLTDHHILEVNGQNV 150
+++ + K + F +R + + + AS+ GL ILE+N +
Sbjct: 17 QSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 76
Query: 151 VGLKND 156
L +
Sbjct: 77 DALNSS 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 56.1 bits (136), Expect = 6e-11
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ + + + GS AA L GD ++ ++G + +++ N+S+ ++
Sbjct: 24 NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQK 82
Query: 97 RP 98
Sbjct: 83 SK 84
Score = 36.5 bits (85), Expect = 8e-04
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ S A+++ L ++ ++G N + E + ++ A ++LT+
Sbjct: 28 TISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80
Score = 34.5 bits (80), Expect = 0.004
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 101 RNVTLHKDSAGHVGFQFKRG-------QIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153
+VTL G GF+ + G I R+ S A+++ L ++ ++G N +
Sbjct: 3 YSVTLTGP--GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 154 KNDSA 158
+ A
Sbjct: 61 THLEA 65
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 56.6 bits (137), Expect = 6e-11
Identities = 9/59 (15%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + + +++G A+ +R GD +L ++G + G + ++ C ++++ ++
Sbjct: 28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQ 85
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I L AS+ + +L ++G + G+ E + ++ +N+T+
Sbjct: 32 TISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL 84
Score = 32.0 bits (73), Expect = 0.036
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
I L AS+ + +L ++G + G+ + A
Sbjct: 32 TISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEA 69
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 56.2 bits (136), Expect = 6e-11
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
H + V V E A LR GD I+ +NG++ + + +R + + + +
Sbjct: 29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLD 86
Score = 36.1 bits (84), Expect = 0.001
Identities = 8/53 (15%), Positives = 22/53 (41%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ ++ + A L I+ +NGQ+ + E + + ++ + L +
Sbjct: 33 IVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85
Score = 33.0 bits (76), Expect = 0.017
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
+ ++ + A L I+ +NGQ+ + + A
Sbjct: 33 IVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEA 70
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 56.6 bits (137), Expect = 9e-11
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
EG+FV + G PA L G LR GD+IL VNG + + Q A L+ +++IV +
Sbjct: 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQ 96
Query: 96 DRP 98
RP
Sbjct: 97 YRP 99
Score = 41.2 bits (97), Expect = 3e-05
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNGLLTDH-HILEVNGQNVVGL 153
R + LHK S G +GF G+ + ++ A +G L IL VNG N+
Sbjct: 17 RKIILHKGSTG-LGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75
Query: 154 KNDSAGHVGFQFKR-GQIIRLV 174
++ A KR GQ + +V
Sbjct: 76 THEQAAAA---LKRAGQSVTIV 94
Score = 34.3 bits (79), Expect = 0.007
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLK 202
+ L S G +GF G+ + ++ A +G L IL VNG N+
Sbjct: 18 KIILHKGSTG-LGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76
Query: 203 DKEIREIVEKAPCVINLTI 221
++ +++A + +
Sbjct: 77 HEQAAAALKRAGQSVTIVA 95
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 56.2 bits (136), Expect = 9e-11
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 21 LCKDIHGKIGLRVA---AIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
L K ++G + A G+F+ V S A GL+ GDQ+L VN +
Sbjct: 21 LKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSK 80
Query: 78 VHALLRNCPVNNISIVVRDRP 98
+L+ IS+ VR
Sbjct: 81 AVEILKTAR--EISMRVRFFS 99
Score = 43.1 bits (102), Expect = 5e-06
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVG 152
R VTL K +GF + G+ I +++ +S A R GL +L VN +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQD 75
Query: 153 LKNDSAGHVGFQFKRGQIIRL-VKESSASRNG 183
+++ A + K + I + V+ S +G
Sbjct: 76 IEHSKAVEI---LKTAREISMRVRFFSGPSSG 104
Score = 31.9 bits (73), Expect = 0.047
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVGL 201
+V LK +GF + G+ I +++ +S A R GL +L VN + +
Sbjct: 18 IVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDI 76
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 55.9 bits (135), Expect = 9e-11
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
FV V E SPA L GL GD I VNG V G ++ +++ N + +
Sbjct: 38 VTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASG-NVLRLETLY 94
Score = 41.2 bits (97), Expect = 2e-05
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 165 FKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
+ + V ESS A GL I VNG NV G++ +EI +I++ + V+ L +
Sbjct: 35 VEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 39.7 bits (93), Expect = 8e-05
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
Query: 100 ERNVTLHKDSAGHVGF-------------QFKRGQIIRLVKESS-ASRNGLLTDHHILEV 145
+ +TL K GF + + + V ESS A GL I V
Sbjct: 5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASV 64
Query: 146 NGQNVVGL 153
NG NV G+
Sbjct: 65 NGLNVEGI 72
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 59.9 bits (144), Expect = 1e-10
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVVR 95
G+FV V E SPAA GL GDQIL+VN + L + P ++I+ +
Sbjct: 22 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 81
Query: 96 DRPFER--------------NVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHH 141
+ + G F +G++ R+V + G
Sbjct: 82 KKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIR 141
Query: 142 ILEVNGQNVVGL 153
I + + + G+
Sbjct: 142 IGKNHKEVERGI 153
Score = 41.4 bits (96), Expect = 1e-04
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDK 204
+V + VG + G + ++++S A++ GL IL VN + + +
Sbjct: 4 LVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIRE 61
Query: 205 EIREIVEKAPCVINLTIMPSYVYHHMMN 232
E + P +TI+
Sbjct: 62 EAVLFLLDLPKGEEVTILAQKKKDVYRR 89
Score = 35.7 bits (81), Expect = 0.010
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKN 155
+ V K VG + G + ++++S A++ GL IL VN + +
Sbjct: 3 KLVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 60
Query: 156 DSA 158
+ A
Sbjct: 61 EEA 63
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 55.4 bits (134), Expect = 1e-10
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
H + V V E A LR GD I+ +NG++ G + + +R P + + + +
Sbjct: 25 HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLD 82
Score = 36.1 bits (84), Expect = 0.001
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ ++ + A L I+ +NG++ G+ E + + ++P + L +
Sbjct: 29 MVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 81
Score = 32.2 bits (74), Expect = 0.024
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
+ ++ + A L I+ +NG++ G+ + A
Sbjct: 29 MVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEA 66
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 56.0 bits (135), Expect = 1e-10
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
V V + A++ G R GD I+ + + +V LL++ + I + V
Sbjct: 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
Score = 37.5 bits (87), Expect = 6e-04
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 97 RPFERNVTLHKDSAGHVGFQFKRG---QIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153
+ R++ + +GF + Q+ L SAS G +I+ + + L
Sbjct: 21 QSMPRSIRFTAEEGD-LGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79
Query: 154 KNDSA 158
Sbjct: 80 TLSEV 84
Score = 30.5 bits (69), Expect = 0.14
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214
Q+ L SAS G +I+ + + L E+ ++++
Sbjct: 47 QVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFG 92
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 59.2 bits (144), Expect = 2e-10
Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 34/203 (16%)
Query: 23 KDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALL 82
++ +G +G V V SPA L GL+ GD I Q+N + + QV +
Sbjct: 269 PELAQAMGYPEDF--QGALVSQVNPNSPAELAGLKAGDIITQINDTKI--TQATQVKTTI 324
Query: 83 RNCPVN-NISI-VVRD-RPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTD 139
V + I V RD +P + + I ++ ++ L
Sbjct: 325 SLLRVGSTVKIIVERDNKPLTLSAVV--------------TDIKSHEQKLQSNNPFLY-- 368
Query: 140 HHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVV 199
G + + +S H Q++ + S+ R G+ I+ N + V
Sbjct: 369 -------GLALRAFEQESPPHGN--VIGVQVVGASENSAGWRAGIRPGDIIISANKKPVT 419
Query: 200 GLKDKEIREIVEKAPCVINLTIM 222
+K ++ I ++ + + ++
Sbjct: 420 DVKS--LQTIAQEKKKELLVQVL 440
Score = 45.8 bits (109), Expect = 4e-06
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
GV V E S G+R GD I+ N K V +++ + + + + + V
Sbjct: 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPV--TDVKSLQTIAQEKK-KELLVQVLRG 442
Query: 98 PFERNVTL 105
P + +
Sbjct: 443 PGSMYLLV 450
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 57.6 bits (139), Expect = 2e-10
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
G+F+ + +G A VGL+ GD+I+++NG +++ +V L+R +SI VR
Sbjct: 110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTE--KTVSIKVRHI 167
Query: 98 P 98
Sbjct: 168 G 168
Score = 43.0 bits (101), Expect = 2e-05
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153
+ V L + +G + G I L+K A GL I+ +NG ++
Sbjct: 86 KEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSC 145
Query: 154 KNDSAGHVGFQFKRGQIIRLV 174
++ ++ + + + +
Sbjct: 146 THEEVINL---IRTEKTVSIK 163
Score = 32.6 bits (74), Expect = 0.057
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVGLK 202
V L +G + G I L+K A GL I+ +NG ++
Sbjct: 87 EVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCT 146
Query: 203 DKEIREIVEKAPCVINLTI 221
+E+ ++ + +++ +
Sbjct: 147 HEEVINLI-RTEKTVSIKV 164
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 55.1 bits (133), Expect = 2e-10
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
V V++GSPA GLR GD I +NG++V G V LL N IS+
Sbjct: 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTALE 93
Score = 41.6 bits (98), Expect = 2e-05
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 165 FKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
+ ++ V++ S A GL I +NG++V+GL ++ E++ K+ I+L
Sbjct: 32 YTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTA 91
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 101 RNVTLHKDSAGHVGF-------------QFKRGQIIRLVKESS-ASRNGLLTDHHILEVN 146
+ +H GF + ++ V++ S A GL I +N
Sbjct: 4 PPIVIHSSGKK-YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHIN 62
Query: 147 GQNVVGL 153
G++V+GL
Sbjct: 63 GESVLGL 69
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 55.0 bits (133), Expect = 2e-10
Identities = 10/59 (16%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + + +++G AA +R GD +L ++G G + ++ C ++++ ++
Sbjct: 26 NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCT-GSLNMTLQ 83
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I L A++ + +L ++G N G+ E + ++ +N+T+
Sbjct: 30 TISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82
Score = 32.2 bits (74), Expect = 0.024
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
I L A++ + +L ++G N G+ + A
Sbjct: 30 TISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEA 67
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 55.2 bits (133), Expect = 2e-10
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
+C +QE SPA GL+ GD + +NG + G QV L+R+ N ++I
Sbjct: 49 FTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG-NLLTIET 103
Score = 39.4 bits (92), Expect = 1e-04
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 165 FKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
+ +I ++E S A GL + +NG + G K++ +++ + ++ + +
Sbjct: 46 SEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
Score = 37.5 bits (87), Expect = 6e-04
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 101 RNVTLHKDSAGHVGF-------------QFKRGQIIRLVKESS-ASRNGLLTDHHILEVN 146
+ VT+ K GF + +I ++E S A GL + +N
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANIN 76
Query: 147 GQNVVGL 153
G + G
Sbjct: 77 GVSTEGF 83
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 55.0 bits (133), Expect = 2e-10
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 34 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQ 92
Query: 96 DRP 98
+P
Sbjct: 93 YKP 95
Score = 39.2 bits (92), Expect = 1e-04
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNGLLTDH-HILEVNGQNVVG 152
R + +H+ S G +GF G+ I ++ A +G L IL VNG ++
Sbjct: 12 PRRIVIHRGSTG-LGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 153 LKNDSAGHVGFQFKR-GQIIRLV 174
++ A K GQ + ++
Sbjct: 71 ASHEQAAIA---LKNAGQTVTII 90
Score = 33.4 bits (77), Expect = 0.014
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLK 202
+ + S G +GF G+ I ++ A +G L IL VNG ++
Sbjct: 14 RIVIHRGSTG-LGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72
Query: 203 DKEIREIVEKAPCVINLTI 221
++ ++ A + +
Sbjct: 73 HEQAAIALKNAGQTVTIIA 91
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 55.2 bits (133), Expect = 2e-10
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
++ V EG A GLR GD +++VNG+ V QV ++R N + + V
Sbjct: 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVMVT 104
Score = 41.0 bits (96), Expect = 3e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 162 GFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLT 220
F Q + V E A R GL ++EVNGQNVV + +++ ++ + + +
Sbjct: 40 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99
Query: 221 IMP 223
++
Sbjct: 100 VVM 102
Score = 36.3 bits (84), Expect = 0.002
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 19/73 (26%)
Query: 100 ERNVTLHKDSAGHVGF------------------QFKRGQIIRLVKESS-ASRNGLLTDH 140
E+ V L K + GF F Q + V E A R GL
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 67
Query: 141 HILEVNGQNVVGL 153
++EVNGQNVV +
Sbjct: 68 FLIEVNGQNVVKV 80
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 54.6 bits (132), Expect = 2e-10
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + + + G AA G+ GD +L ++G+ + +R C +S+ +
Sbjct: 26 NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACG-ERLSLGLS 83
Score = 36.9 bits (86), Expect = 6e-04
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 169 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I RL A++ G+ +L ++G+N L E + + ++L +
Sbjct: 30 SISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82
Score = 33.4 bits (77), Expect = 0.009
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 121 QIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
I RL A++ G+ +L ++G+N L + A
Sbjct: 30 SISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEA 67
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 55.0 bits (132), Expect = 2e-10
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 30 GLRVAAIHE----GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G ++++ E ++V V+E A+ GL+ GD+IL++N + N + L
Sbjct: 23 GFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ- 81
Query: 86 PVNNISIVVRDRP 98
++ ++VR P
Sbjct: 82 --PSLGLLVRTYP 92
Score = 31.5 bits (71), Expect = 0.051
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNVVGLKDKE 205
G ++ ++ D + + VKE AS+ GL ILE+N + L
Sbjct: 23 GFSLSSVEEDGIRRL--------YVNSVKETGLASKKGLKAGDEILEINNRAADALNSSM 74
Query: 206 IREIVEKAPCVINLTIMPS 224
+++ + + + + P
Sbjct: 75 LKDFLSQPSLGLLVRTYPE 93
Score = 30.7 bits (69), Expect = 0.091
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 101 RNVTLHKDSAGHVGFQF---------KRGQIIRLVKE-SSASRNGLLTDHHILEVNGQNV 150
++ + K + F R + VKE AS+ GL ILE+N +
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 67
Query: 151 VGLKNDSA 158
L +
Sbjct: 68 DALNSSML 75
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 55.0 bits (133), Expect = 3e-10
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
EG+F+ V E PAA G+R GD++L+VNG + G+ H+ LR + + V
Sbjct: 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRE 104
Query: 98 P 98
Sbjct: 105 S 105
Score = 38.9 bits (91), Expect = 2e-04
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------------IIRLVKESSASRNGLLTDHHILEVN 146
E +T+ + + G +G G+ I R+ +E A+R G+ +LEVN
Sbjct: 16 ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 74
Query: 147 GQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
G + G ++ A + G +++
Sbjct: 75 GVALQGAEHHEAVEA---LRGAGTAVQMR 100
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ +E A+R G+ +LEVNG + G + E E + A + + +
Sbjct: 50 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 55.1 bits (133), Expect = 3e-10
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+F+ + G PA L G LR GDQIL VNG + ++ Q L+N ++I+ +
Sbjct: 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQY 96
Query: 97 RP 98
+P
Sbjct: 97 KP 98
Score = 40.1 bits (94), Expect = 7e-05
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 96 DRPFE-RNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNG 147
D P E R + +H+ S G +GF G+ I ++ A +G L IL VNG
Sbjct: 10 DIPREPRRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG 68
Query: 148 QNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
++ ++ A K GQ + ++
Sbjct: 69 VDLRNASHEQAAIA---LKNAGQTVTII 93
Score = 32.8 bits (75), Expect = 0.025
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLK 202
+ + S G +GF G+ I ++ A +G L IL VNG ++
Sbjct: 17 RIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 203 DKEIREIVEKAPCVINLTI 221
++ ++ A + +
Sbjct: 76 HEQAAIALKNAGQTVTIIA 94
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 54.2 bits (131), Expect = 3e-10
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
EG+F+ V E PAA G+R GD++L+VNG + G+ H+ LR + + V
Sbjct: 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRE 92
Query: 98 P 98
Sbjct: 93 R 93
Score = 38.0 bits (89), Expect = 3e-04
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------------IIRLVKESSASRNGLLTDHHILEVN 146
E +T+ + + G +G G+ I R+ +E A+R G+ +LEVN
Sbjct: 4 ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 147 GQNVVGLKNDSA 158
G + G ++ A
Sbjct: 63 GVALQGAEHHEA 74
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ +E A+R G+ +LEVNG + G + E E + A + + +
Sbjct: 38 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 54.7 bits (132), Expect = 3e-10
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 2 SNIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVA-AIHEGVFVCLVQEGSPAALVG-LRFG 59
S+ E + + + ++ L D G +G + GV V + G A G L+ G
Sbjct: 2 SSGSSGPETVCWGHVEEVELINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTG 60
Query: 60 DQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAG 111
D IL++ G V G QV +LRNC N++ ++V P S+G
Sbjct: 61 DHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDPAGDISVTSGPSSG 111
Score = 37.7 bits (88), Expect = 4e-04
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-----IIRLVKESSASRNG-LLTDHHILEVNGQNVVGL 153
V L D +G +GF G+ + +V A R+G L T HIL++ G NV G+
Sbjct: 16 VEEVELINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74
Query: 154 KNDSAGHVGFQFKR-GQIIRLV 174
++ V + G +R++
Sbjct: 75 TSEQVAQV---LRNCGNSVRML 93
Score = 33.9 bits (78), Expect = 0.011
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-----IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKD 203
V L ND +G +GF G+ + +V A R+G L T HIL++ G NV G+
Sbjct: 18 EVELINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTS 76
Query: 204 KEIREIVEKAPCVINLTI 221
+++ +++ + + +
Sbjct: 77 EQVAQVLRNCGNSVRMLV 94
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 57.3 bits (139), Expect = 6e-10
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISI-VVR 95
G FV V S AA G++ GD I +NGK + S+ + A + PV +++ ++R
Sbjct: 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI--SSFAALRAQVGTMPVGSKLTLGLLR 343
Query: 96 D-RPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLK 154
D + N+ L Q + +SS+ NG+ +
Sbjct: 344 DGKQVNVNLEL--------------QQSSQNQVDSSSIFNGI------------EGAEMS 377
Query: 155 NDSAGHVGFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
N +G ++ VK + A++ GL I+ N Q V + + +R++++
Sbjct: 378 NKGK-------DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAE--LRKVLDSK 428
Query: 214 PCVINLTI 221
P V+ L I
Sbjct: 429 PSVLALNI 436
Score = 46.2 bits (110), Expect = 3e-06
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
+ +GV V V+ G+PAA +GL+ GD I+ N + V N+ ++ +L + P + +
Sbjct: 376 MSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP-SVL 432
Query: 91 SIVVRDRPFERNVTL 105
++ ++ + +
Sbjct: 433 ALNIQRGDSTIYLLM 447
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 53.5 bits (129), Expect = 6e-10
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ + + V GS AAL L GD I ++G+ + + ++ C +N+++ V
Sbjct: 26 EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVA- 83
Query: 97 RPFERN 102
R +
Sbjct: 84 RSEHES 89
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ S A+ L I ++G+N + E + ++ + LT+
Sbjct: 31 ISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTV 82
Score = 31.9 bits (73), Expect = 0.038
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 122 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSA 158
I R+ S A+ L I ++G+N + + A
Sbjct: 31 ISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEA 67
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 54.4 bits (131), Expect = 6e-10
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
G+++ V GS A GL+ GDQIL+VNG++ + LL++ ++ + V+D
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS--RHLILTVKDVG 104
Score = 41.0 bits (96), Expect = 5e-05
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVG 152
E+ V L +G + G I + S A +GL ILEVNG++ +
Sbjct: 21 EKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLN 80
Query: 153 LKNDSA 158
+ +D A
Sbjct: 81 ILHDEA 86
Score = 34.4 bits (79), Expect = 0.007
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASR 181
SS S + H+L+ + V L +G + G I + S A
Sbjct: 2 SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG 61
Query: 182 NGLLTDHHILEVNGQNVVGLKDKEIREIVEKA 213
+GL ILEVNG++ + + E +++ +
Sbjct: 62 SGLKVGDQILEVNGRSFLNILHDEAVRLLKSS 93
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 53.9 bits (130), Expect = 6e-10
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
G++V LV+ GS A GLR GDQIL+VN K++A + L+ + + V
Sbjct: 36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVYSA 92
Score = 36.6 bits (85), Expect = 0.001
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 101 RNVTLHKDSAGH-VGFQFKRGQ-------IIRLVKESSASRNGLLTDHHILEVNGQNVVG 152
R V+L + A +GF + G + + S A + GL IL VN +++
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLAR 69
Query: 153 LKNDSAGHVGFQFKR-GQIIRLVKE 176
+ + A K +++ V
Sbjct: 70 VTHAEAVKA---LKGSKKLVLSVYS 91
Score = 31.5 bits (72), Expect = 0.058
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 170 IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVI 217
+ + S A + GL IL VN +++ + E + ++ + ++
Sbjct: 39 VSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLV 86
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 57.1 bits (137), Expect = 7e-10
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVVR 95
G+FV V E SPAA GL GDQIL+VN + L + P ++I+ +
Sbjct: 30 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 89
Query: 96 DRPFER--------------NVTLHKDSAGHVGFQFKRGQIIRLV 126
+ + G F +G++ R+V
Sbjct: 90 KKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVV 134
Score = 41.7 bits (97), Expect = 9e-05
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDK 204
+V + VG + G + ++++S A++ GL IL VN + + +
Sbjct: 12 LVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIRE 69
Query: 205 EIREIVEKAPCVINLTIMPSYVYHHMMN 232
E + P +TI+
Sbjct: 70 EAVLFLLDLPKGEEVTILAQKKKDVYRR 97
Score = 37.9 bits (87), Expect = 0.002
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 97 RPFERNVTLHKDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLTDHHILEVNGQNVV 151
RP + V K VG + G + ++++S A++ GL IL VN +
Sbjct: 7 RPSMKLVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 64
Query: 152 GLKNDSAGHVGFQFKRGQIIRLV 174
+ + A +G+ + ++
Sbjct: 65 NIIREEAVLFLLDLPKGEEVTIL 87
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 54.0 bits (130), Expect = 7e-10
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 4 IYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQI 62
+Y S+ + + + K +G V + V + + +G A G L GD++
Sbjct: 14 VYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEV 73
Query: 63 LQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
L++NG + G ++++V LL + ++ V+
Sbjct: 74 LEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLI 105
Score = 46.3 bits (110), Expect = 4e-07
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 129 SSASRNGLLTDHHILEVNGQNV--VGLKNDSAGHVGFQFKRGQ----IIRLVKESSASRN 182
SS I G+ V V ++ +G + I R+VK +A ++
Sbjct: 5 SSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKS 64
Query: 183 GLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225
GLL +LE+NG + G E+ +++ + ++PS
Sbjct: 65 GLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS 108
Score = 45.1 bits (107), Expect = 1e-06
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ----IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKN 155
+ V + K +G + I R+VK +A ++GLL +LE+NG + G
Sbjct: 27 KIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV 86
Query: 156 DSAGHVGFQFKRGQIIRLVKESSASRNG 183
+ + G + ++ SS +G
Sbjct: 87 NEVFDL-LSDMHGTLTFVLIPSSGPSSG 113
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 56.9 bits (138), Expect = 8e-10
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISI-VVR 95
G FV V GS +A G++ GD I +NGK + ++ ++ + + + + ++R
Sbjct: 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKLGLLR 320
Query: 96 D-RPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLK 154
+ +P E VTL S++S LE + LK
Sbjct: 321 NGKPLEVEVTL---------------------DTSTSSSASAEMITPALEGATLSDGQLK 359
Query: 155 NDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214
+ G I +VK S A++ GL D I+ VN V + + +R+++ P
Sbjct: 360 DGGKGIK--------IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE--MRKVLAAKP 409
Query: 215 CVINLTIM 222
+I L I+
Sbjct: 410 AIIALQIV 417
Score = 44.6 bits (106), Expect = 1e-05
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNI 90
++ +G+ + V +GSPAA GL+ D I+ VN V +++ ++ +L P I
Sbjct: 356 GQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRV--NSIAEMRKVLAAKP-AII 412
Query: 91 SIVVR 95
++ +
Sbjct: 413 ALQIV 417
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 54.2 bits (130), Expect = 1e-09
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
++ V EG A GLR GD +++VNG+ V QV ++R N + + V
Sbjct: 65 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKVVMV 123
Query: 98 P 98
Sbjct: 124 T 124
Score = 42.3 bits (99), Expect = 2e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 162 GFQFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLT 220
F Q + V E A R GL ++EVNGQNVV + +++ ++ + + +
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
Query: 221 IMP 223
++
Sbjct: 120 VVM 122
Score = 35.3 bits (81), Expect = 0.005
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 22/100 (22%)
Query: 73 SNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGF----------------- 115
S+ H H+ P + S + + V L K + GF
Sbjct: 4 SHHHHHHSQDPLVPRGSGSDYIIKE---KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPT 60
Query: 116 -QFKRGQIIRLVKESS-ASRNGLLTDHHILEVNGQNVVGL 153
F Q + V E A R GL ++EVNGQNVV +
Sbjct: 61 PAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 100
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 53.6 bits (129), Expect = 1e-09
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 21 LCKDIHGKIGLRVA----AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNM 75
L K+ +G +A ++ + V V A+ G ++ G+++L +NGK++ G+
Sbjct: 21 LHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTH 80
Query: 76 HQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSA 110
H A+LR +++V + + S
Sbjct: 81 HDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSG 115
Score = 32.4 bits (74), Expect = 0.037
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 94 VRDRPFERNVTLHKDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLLTDH-HILE 144
++ LHK+ +GF G + R+ AS+ G + +L
Sbjct: 10 LKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLS 69
Query: 145 VNGQNVVGLKNDSA 158
+NG+++ G + A
Sbjct: 70 INGKSLKGTTHHDA 83
Score = 30.5 bits (69), Expect = 0.15
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLLTDH-HILEVNGQNVVG 200
+ K + AG +GF G + R+ AS+ G + +L +NG+++ G
Sbjct: 19 TILHKEEGAG-LGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG 77
Query: 201 LKDKEIREIVEKAPCVINLTI 221
+ I+ +A I
Sbjct: 78 TTHHDALAILRQAREPRQAVI 98
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 53.7 bits (129), Expect = 1e-09
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 21 LCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALV--GLRFGDQILQVNGKTVAGSNM 75
+ D +G+ G V V V V G+PA L L GDQ++ +NG+ +A
Sbjct: 21 MKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH 80
Query: 76 HQVHALLRNC---PVNNISIVVRDRPFERNVTLHKDSAG 111
QV ++ + ++VR V S+G
Sbjct: 81 DQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSSG 119
Score = 38.3 bits (89), Expect = 3e-04
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRN--GLLTDHHILEVNGQNVV 151
+ + D G GF K G + R+ + A L ++ +NG+++
Sbjct: 17 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 152 GLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLT 186
+D Q++ +K S +G L
Sbjct: 77 EHTHD------------QVVLFIKASCERHSGELM 99
Score = 34.9 bits (80), Expect = 0.005
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASR 181
S +S NG + +++ + +K D G GF K G + R+ + A
Sbjct: 3 SGSSGNGGIPHDNLVLIR------MKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADL 56
Query: 182 N--GLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
L ++ +NG+++ ++ ++ + + +M
Sbjct: 57 CVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 99
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 52.8 bits (127), Expect = 3e-09
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+FV + PAA G +R GD++L++N + + G + A+++ P + + +V
Sbjct: 50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFI 108
Query: 96 DRPFERNVTLHKDSAG 111
N S+G
Sbjct: 109 RNEDAVNQMASGPSSG 124
Score = 32.0 bits (73), Expect = 0.048
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 129 SSASRNGLLTDHHILEVNGQN-----VVGLKNDSAGHVGFQFKRGQ--------IIRLVK 175
SS S TD I + ++ L+ D G +G + ++ +
Sbjct: 2 SSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNG-LGLSLAGNKDRSRMSIFVVGINP 60
Query: 176 ESSASRNGLLT--DHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
E A+ +G + D +LE+N Q + G + I++ AP + L
Sbjct: 61 EGPAAADGRMRIGDE-LLEINNQILYGRSHQNASAIIKTAPSKVKLVF 107
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 52.0 bits (125), Expect = 3e-09
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVH 79
L K ++GL ++ G + + +G + L+ GD I + NG + G +
Sbjct: 8 LMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCY 67
Query: 80 ALLRNCPVNNISIVVRDRP 98
AL + V R +P
Sbjct: 68 ALFKGANGKVSMEVTRPKP 86
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ----IIRLVKESSASRNGLLT--DHHILEVNGQNVVGL 153
+ NV L K + +G + I L++ + L D I + NG + GL
Sbjct: 3 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDI-ITKFNGDALEGL 61
Query: 154 KNDSAGHV 161
+
Sbjct: 62 PFQVCYAL 69
Score = 35.4 bits (82), Expect = 0.002
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 149 NVVGLKNDSAGHVGFQFKRGQ----IIRLVKESSASRNGLLT--DHHILEVNGQNVVGLK 202
NV +K +G + I L++ + L D I + NG + GL
Sbjct: 5 NVDLMKKAGKE-LGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDI-ITKFNGDALEGLP 62
Query: 203 DKEIREIVEKAPCVINLTI 221
+ + + A +++ +
Sbjct: 63 FQVCYALFKGANGKVSMEV 81
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 52.5 bits (126), Expect = 3e-09
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS-IVVRD 96
G+++ + S AA G +R GD+I+Q+NG V N + ALL + N S ++ R
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEV--QNREEAVALLTSEENKNFSLLIARP 106
Query: 97 RPFERNVTLHKDSA 110
+ DS
Sbjct: 107 ELQLDEGWMDDDSG 120
Score = 32.1 bits (73), Expect = 0.047
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ---------IIRLVKESSA 179
SS S + + E+ + V + +S +G I + S A
Sbjct: 2 SSGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIA 61
Query: 180 SRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+++G + I+++NG V +++ + + + +L I
Sbjct: 62 AKDGRIREGDRIIQINGIEVQN-REEAVALLTSEENKNFSLLI 103
Score = 28.7 bits (64), Expect = 0.87
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 103 VTLHK-DSAGHVGFQFKRGQ---------IIRLVKESSASRNG-LLTDHHILEVNGQNVV 151
V L++ +S +G I + S A+++G + I+++NG V
Sbjct: 23 VDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ 82
Query: 152 GLKNDSAGHVGFQFKRGQIIRLVK 175
+ A + + L+
Sbjct: 83 NREEAVA--LLTSEENKNFSLLIA 104
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 51.6 bits (124), Expect = 5e-09
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
G+++ + GSPAA G L GD+IL+VNG ++ G + L+R+ + +V
Sbjct: 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVA 93
Query: 96 DRPFERNVTLHKD-SAG 111
E +H S+G
Sbjct: 94 KSDVETAKKIHSGPSSG 110
Score = 34.6 bits (80), Expect = 0.006
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 102 NVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNG-LLTDHHILEVNGQNV 150
V L + +G +G G I L+ S A+ +G L ILEVNG ++
Sbjct: 11 TVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69
Query: 151 VGLKNDSAGHVGFQFKR-GQIIRLV 174
+GL A + + G+ +R +
Sbjct: 70 LGLGYLRAVDL---IRHGGKKMRFL 91
Score = 32.3 bits (74), Expect = 0.033
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
G ++ + G G I L+ S A+ +G L ILEVNG +++GL
Sbjct: 22 GMGLIDGMHTHLGAPGLY-----IQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76
Query: 206 IREIVEKAPCVINLTI 221
+++ + +
Sbjct: 77 AVDLIRHGGKKMRFLV 92
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 51.7 bits (124), Expect = 5e-09
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G + + G++V ++E AAL G L+ GD+IL VNG+ + L R
Sbjct: 34 IVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93
Query: 84 NCPVNNISIVVRDRPFERNVTLHKDSAG 111
N +S+ V+ R +N + S+G
Sbjct: 94 NAG-YAVSLRVQHRLQVQNGPISGPSSG 120
Score = 35.5 bits (82), Expect = 0.003
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 100 ERNVTLHKDS-------AGHVGFQFKRGQ----IIRLVKESSASRNGLLTDH-HILEVNG 147
E + L + G Q+ + R+ + +A+ +G L + IL VNG
Sbjct: 18 EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 77
Query: 148 QNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
Q++ L + A + F+ G + L
Sbjct: 78 QDLKNLLHQDAVDL---FRNAGYAVSLR 102
Score = 30.5 bits (69), Expect = 0.16
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ R+ + +A+ +G L + IL VNGQ++ L ++ ++ A ++L +
Sbjct: 51 VSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 51.3 bits (123), Expect = 7e-09
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
V + + G A G ++ GD IL VN + + + +LR +++
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 84
Query: 96 DRP 98
P
Sbjct: 85 RGP 87
Score = 40.5 bits (95), Expect = 5e-05
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 153
+V L K G +GF K I L++ +A ++GL+ IL VN + +V L
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 154 KNDSA 158
DSA
Sbjct: 63 SYDSA 67
Score = 33.6 bits (77), Expect = 0.013
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 149 NVVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 201
+V K G +GF K I L++ +A ++GL+ IL VN + +V L
Sbjct: 4 SVRLFKRKVGG-LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 202 KDKEIREIVEKAPCVINLTI 221
E++ ++ +
Sbjct: 63 SYDSALEVLRGIASETHVVL 82
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 51.7 bits (124), Expect = 8e-09
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV- 94
+ + + + +G+ + ++ GD+ILQ+ G + G + +++ P ++IV+
Sbjct: 56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115
Query: 95 RDRPFERNVTLHKDS 109
R + T DS
Sbjct: 116 RKSLQSKETTAAGDS 130
Score = 35.6 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNGLLT--DHHILEVNG 147
VTL K SAG +GF + G+ I R+ K +++ ++ + D IL++ G
Sbjct: 30 VCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDE-ILQLGG 87
Query: 148 QNVVGLKNDSA 158
+ GL A
Sbjct: 88 TAMQGLTRFEA 98
Score = 30.9 bits (70), Expect = 0.13
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ----------IIRLVKESSASRNGLLT--DHHILEVNGQN 197
V L+ SAG +GF + G+ I R+ K +++ ++ + D IL++ G
Sbjct: 32 TVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDE-ILQLGGTA 89
Query: 198 VVGLKDKEIREIVEKAPC-VINLTI 221
+ GL E I++ P + + I
Sbjct: 90 MQGLTRFEAWNIIKALPDGPVTIVI 114
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 51.4 bits (123), Expect = 8e-09
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 21 LCKDIHGKIGLRVA--AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQ 77
L K G +G V V + + G A G ++ GD IL VN + + +
Sbjct: 14 LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDS 73
Query: 78 VHALLRNCPVNNISIVVRDRP 98
+LR +++ P
Sbjct: 74 ALEVLRGIASETHVVLILRGP 94
Score = 41.8 bits (98), Expect = 2e-05
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 153
+V L K G +GF K I L++ +A ++GL+ IL VN + +V L
Sbjct: 10 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69
Query: 154 KNDSA 158
DSA
Sbjct: 70 SYDSA 74
Score = 36.4 bits (84), Expect = 0.002
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 141 HILEVNGQNVVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEV 193
H++E N +V K G +GF K I L++ +A ++GL+ IL V
Sbjct: 3 HMIEPNVISVRLFKRKVGG-LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAV 61
Query: 194 NGQNVVGLKDKEIREIVEKAPCVINLTIM 222
N + +V L E++ ++ ++
Sbjct: 62 NDRPLVDLSYDSALEVLRGIASETHVVLI 90
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 51.3 bits (123), Expect = 8e-09
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+G+F+ V E SPA L+ GD+IL+V+G + ++ + ++N N + +V+
Sbjct: 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAG-NPVVFIVQS 108
Query: 97 RP 98
Sbjct: 109 LS 110
Score = 36.7 bits (85), Expect = 0.001
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 17/76 (22%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ----------------IIRLVKESSASRNGLLTDH-HI 142
R V + ++ +G GQ I +++++S A + L I
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 143 LEVNGQNVVGLKNDSA 158
LEV+G ++ + A
Sbjct: 76 LEVSGVDLQNASHSEA 91
Score = 35.5 bits (82), Expect = 0.003
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G ++VG + + +G I +++++S A + L ILEV+G ++
Sbjct: 30 GISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS 89
Query: 205 EIREIVEKAPCVINLTI 221
E E ++ A + +
Sbjct: 90 EAVEAIKNAGNPVVFIV 106
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 50.8 bits (122), Expect = 8e-09
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 21 LCKDIHGK-IGLRVA--AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH 76
L K G+ +G+++ GVF+ + EG AA G L D++L +NG +
Sbjct: 9 LHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68
Query: 77 QVHALLRNCPVNNISIVVRDRP 98
+++ +++ +
Sbjct: 69 LAAQIIQASG-ERVNLTIARPG 89
Score = 34.2 bits (79), Expect = 0.007
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 101 RNVTLHKDSAGH-VGFQFKRGQ------IIRLVKESSASRNG-LLTDHHILEVNGQNVVG 152
V LHK +G +G + R I+ L++ A+++G L ++ +L +NG ++
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKY 64
Query: 153 LKNDSAGHVGFQFKR-GQIIRLV 174
+ A + + G+ + L
Sbjct: 65 GTPELAAQI---IQASGERVNLT 84
Score = 31.5 bits (72), Expect = 0.061
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 154 KNDSAGHVGFQFKRGQ------IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEI 206
K DS +G + R I+ L++ A+++G L ++ +L +NG ++ +
Sbjct: 11 KRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELA 70
Query: 207 REIVEKAPCVINLTI 221
+I++ + +NLTI
Sbjct: 71 AQIIQASGERVNLTI 85
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 50.4 bits (121), Expect = 9e-09
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G++ G+F+ + SPA L G L+ GD+IL +NGK V S V L++
Sbjct: 26 GEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA 85
Query: 86 PVNNISIVVR 95
I + ++
Sbjct: 86 D-FKIELEIQ 94
Score = 35.4 bits (82), Expect = 0.003
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------------IIRLVKESSASRNGLL-TDHHILEVN 146
VTL K G RG+ I +V +S A G L IL +N
Sbjct: 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 147 GQNVVGLKNDSA 158
G++V +
Sbjct: 67 GKDVRNSTEQAV 78
Score = 33.1 bits (76), Expect = 0.014
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I +V +S A G L IL +NG++V ++ + +++++A I L I
Sbjct: 41 IKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 51.0 bits (122), Expect = 1e-08
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVH 79
L G +GL V + + + AA G L+ GD ++ V V G + +
Sbjct: 33 LTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFL 91
Query: 80 ALLRNCPVNN-ISIVVR 95
LL+N + + I
Sbjct: 92 KLLQNITIGTVLQIKAY 108
Score = 42.2 bits (99), Expect = 2e-05
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 102 NVTLHKDSAGHVGFQFKRG----QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKND 156
L + G G + QI L+ + +A+ +G L ++ V NV+G
Sbjct: 30 QTKLTVGNLGL-GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLR 88
Query: 157 SAGHVGFQFKRGQIIRLV 174
+ G ++++
Sbjct: 89 EFLKLLQNITIGTVLQIK 106
Score = 34.5 bits (79), Expect = 0.007
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 151 VGLKNDSAGHVGFQFKRG----QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
L + G G + QI L+ + +A+ +G L ++ V NV+G +E
Sbjct: 31 TKLTVGNLGL-GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE 89
Query: 206 IREIVEKAPC--VINLTI 221
++++ V+ +
Sbjct: 90 FLKLLQNITIGTVLQIKA 107
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 49.6 bits (119), Expect = 1e-08
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+FV + + S AA G ++ GD +L++NG ++ L+ + +VV+
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQ 78
Score = 41.9 bits (99), Expect = 7e-06
Identities = 12/78 (15%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLL-TDHHILEVNGQNVVGLKDK 204
G V +K+ G + + + ++S A+R+G + +L++NG +
Sbjct: 1 GSKVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT 60
Query: 205 EIREIVEKAPCVINLTIM 222
+ + ++E++ + + +
Sbjct: 61 DAKTLIERSKGKLKMVVQ 78
Score = 31.5 bits (72), Expect = 0.044
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 103 VTLHKDSAGH-VGFQFKRGQII-RLVKESSASRNGLL-TDHHILEVNGQNVVGLKNDSA 158
VTL K G + + + ++S A+R+G + +L++NG + A
Sbjct: 4 VTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 62
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 50.6 bits (121), Expect = 2e-08
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 21 LCKDIHGKIGLRVA-------AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAG 72
L D G+++ + + ++ SPA G L+ GD+++ +NG
Sbjct: 21 LTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 80
Query: 73 SNMHQVHALLRNCPVNNISIVVRDRPFERNV 103
S + + LLR+ + + + + +V
Sbjct: 81 STFEEANQLLRDSSITSKVTLEIEFDVAESV 111
Score = 36.4 bits (84), Expect = 0.002
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-----------IIRLVKESSASRNGLL-TDHHILEVNG 147
V L D G Q + I + +S A R G+L ++ +NG
Sbjct: 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 148 QNVVGLKNDSA 158
+ A
Sbjct: 76 IPTEDSTFEEA 86
Score = 34.8 bits (80), Expect = 0.006
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKE 205
G + G + I + +S A R G+L ++ +NG +E
Sbjct: 30 GIQLQGSVFATETLSSPPL----ISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 85
Query: 206 IREIVEKAPCVINLTI 221
+++ + +T+
Sbjct: 86 ANQLLRDSSITSKVTL 101
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 50.1 bits (120), Expect = 2e-08
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ + +GSPA L+ GD+IL VNG+++ + L+++ ++++ +
Sbjct: 43 VPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAG-LSVTLRIIP 101
Query: 97 RP 98
+
Sbjct: 102 QE 103
Score = 35.5 bits (82), Expect = 0.003
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G ++ N G I R++ S A R L IL VNGQ+++ +
Sbjct: 25 GFVIISSLNRP--ESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHA 82
Query: 205 EIREIVEKAPCVINLTIMP 223
+I ++++ A + L I+P
Sbjct: 83 DIVKLIKDAGLSVTLRIIP 101
Score = 35.1 bits (81), Expect = 0.004
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ--------------IIRLVKESSASRNGLLTDH-HILEV 145
+V +H+ GF I R++ S A R L IL V
Sbjct: 12 SDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71
Query: 146 NGQNVVGLKNDSA 158
NGQ+++ + +
Sbjct: 72 NGQSIINMPHADI 84
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 49.7 bits (119), Expect = 2e-08
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
+FV + + S AA G ++ GD +L++NG ++ L+ + +VV+
Sbjct: 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD 82
Query: 98 P 98
Sbjct: 83 E 83
Score = 38.5 bits (90), Expect = 1e-04
Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 149 NVVGLKNDSAGHVGFQFKRGQIIRLVKESS-ASRNG-LLTDHHILEVNGQNVVGLKDKEI 206
V +K+ G + ++ + + S A+R+G + +L++NG + +
Sbjct: 5 KVTLVKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 64
Query: 207 REIVEKAPCVINLTIM 222
+ ++E++ + + +
Sbjct: 65 KTLIERSKGKLKMVVQ 80
Score = 31.6 bits (72), Expect = 0.042
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 101 RNVTLHKDSAGH-VGFQFKRGQIIRLVKESS-ASRNG-LLTDHHILEVNGQNVVGLKNDS 157
VTL K + G + ++ + + S A+R+G + +L++NG +
Sbjct: 4 TKVTLVKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63
Query: 158 A 158
A
Sbjct: 64 A 64
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 50.1 bits (120), Expect = 3e-08
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 21 LCKDIHGKIGLRVAA------IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGS 73
+ + G +G V A +FV VQ GS A L+ DQIL +N + +
Sbjct: 31 IERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQN 90
Query: 74 NMH-QVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAG 111
H Q ALL+ ++ ++V P + S+G
Sbjct: 91 ISHQQAIALLQQTT-GSLRLIVAREPVHTKSSTSGPSSG 128
Score = 30.9 bits (70), Expect = 0.13
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNG-LLTDHHILEVNGQN 149
+ + + S G +GF + + + S A R+ L + IL +N
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTP 86
Query: 150 V-VGLKNDSAGHVGFQFKR-GQIIRLV 174
+ + + A + ++ +RL+
Sbjct: 87 LDQNISHQQAIAL---LQQTTGSLRLI 110
Score = 30.9 bits (70), Expect = 0.16
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG-LLTDHHILEVNGQNV-VGLKDK 204
G +VV L++ + G V F + + S A R+ L + IL +N + + +
Sbjct: 40 GFSVVALRSQNLGKVDI-F----VKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQ 94
Query: 205 EIREIVEKAPCVINLTI 221
+ ++++ + L +
Sbjct: 95 QAIALLQQTTGSLRLIV 111
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 50.1 bits (120), Expect = 3e-08
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G +G G++V V GS A G ++ D+I+ V+G + G H V +LR
Sbjct: 33 IVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR 92
Query: 84 NCPVNNISIVVRDRP 98
N + + + R
Sbjct: 93 NAG-QVVHLTLVRRK 106
Score = 35.5 bits (82), Expect = 0.004
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------------IIRLVKESSASRNGLL-TDHHILEVNG 147
NV L + +G + + ++ S+A NG + + I+ V+G
Sbjct: 17 YNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDG 76
Query: 148 QNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
N+ G N V + GQ++ L
Sbjct: 77 VNIQGFANHDVVEV---LRNAGQVVHLT 101
Score = 35.1 bits (81), Expect = 0.005
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
+ ++ S+A NG + + I+ V+G N+ G + ++ E++ A V++LT++
Sbjct: 50 VKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 49.1 bits (118), Expect = 3e-08
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 30 GLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88
G+ + H G++V V A G + GD++L VNG ++ G+ Q LRN
Sbjct: 25 GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-Q 83
Query: 89 NISIVVRDRP 98
+ +++
Sbjct: 84 VVHLLLEKGQ 93
Score = 33.3 bits (77), Expect = 0.013
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNGLLTDH-HILEVNGQN 149
V L K+ +G G + ++ + +A +G + +L VNG +
Sbjct: 7 FEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 150 VVGLKNDSAGHVGFQFKR-GQIIRLV 174
+ G + A + GQ++ L+
Sbjct: 66 LEGATHKQAVET---LRNTGQVVHLL 88
Score = 31.0 bits (71), Expect = 0.069
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 147 GQNVVGLKNDSAGHVG-FQFKRGQIIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G +V G N S H G + + ++ + +A +G + +L VNG ++ G K
Sbjct: 19 GISVTGGVNTSVRHGGIY------VKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK 72
Query: 205 EIREIVEKAPCVINLTI 221
+ E + V++L +
Sbjct: 73 QAVETLRNTGQVVHLLL 89
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 49.4 bits (118), Expect = 3e-08
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + ++ S G L GD IL ++G ++ ++ + LL + + + +
Sbjct: 41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEIL 99
Query: 96 DRP 98
P
Sbjct: 100 PVP 102
Score = 41.7 bits (98), Expect = 2e-05
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLL-TDHHILEVNGQNVVG 200
+V + +G I R+ S R+G L HIL ++G ++
Sbjct: 18 MVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEH 77
Query: 201 LKDKEIREIVEKAPCVINLTIMPSY 225
E +++ + L I+P
Sbjct: 78 CSLLEATKLLASISEKVRLEILPVP 102
Score = 39.4 bits (92), Expect = 2e-04
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
V + K +G I R+ S R+G L HIL ++G ++
Sbjct: 17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 152 GLKNDSA 158
A
Sbjct: 77 HCSLLEA 83
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 48.9 bits (117), Expect = 3e-08
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
+ V V G A L GDQILQ+N + + + +LR +++SI V
Sbjct: 32 PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAE-DSLSITVVRCT 89
Score = 39.3 bits (92), Expect = 9e-05
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 98 PFERNVTLHKDSAGHVGFQF----KRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153
V + KD+ + F + V ++ L IL++N + L
Sbjct: 7 GVRHTVKIDKDTLLQ-DYGFHISESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDL 65
Query: 154 KNDSA 158
+ A
Sbjct: 66 SWERA 70
Score = 37.3 bits (87), Expect = 5e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 151 VGLKNDSAGHVGFQF----KRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
V + D+ + F + V ++ L IL++N + L +
Sbjct: 12 VKIDKDTLLQ-DYGFHISESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWERA 70
Query: 207 REIVEKAPCVINLTIM 222
+I+ +A +++T++
Sbjct: 71 VDILREAEDSLSITVV 86
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 48.9 bits (117), Expect = 4e-08
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVVR 95
+ + + V A G L GD+++ V+G VAG V L+ + N +++ VR
Sbjct: 34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVR 93
Query: 96 DRP 98
+
Sbjct: 94 RKV 96
Score = 34.2 bits (79), Expect = 0.006
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNG-LLTDHHILEVNGQNVV 151
E +V L + +G GF+ G I ++ SA R+G L ++ V+G V
Sbjct: 10 ELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68
Query: 152 GLKNDSAGHVGFQFKRGQIIRLV 174
G + + R + L
Sbjct: 69 GKTHRYVIDLMHHAARNGQVNLT 91
Score = 26.9 bits (60), Expect = 2.5
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I ++ SA R+G L ++ V+G V G + + +++ A + +
Sbjct: 38 IGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNL 90
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 48.9 bits (117), Expect = 4e-08
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + + A G L GD+++ VN + +++ + +L+ P + + +
Sbjct: 43 RSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGIC 102
Query: 96 DRP 98
P
Sbjct: 103 SGP 105
Score = 32.8 bits (75), Expect = 0.026
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-----------IIRLVKESSASRNG-LLTDHHILEVNGQ 148
+ V L KD G +GF Q I LV + A R+G LL ++ VN
Sbjct: 17 KIVELVKDCKG-LGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75
Query: 149 NVVGLKNDSA 158
+ A
Sbjct: 76 CLDNTSLAEA 85
Score = 27.4 bits (61), Expect = 1.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 169 QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPC-VINLTI 221
I LV + A R+G LL ++ VN + E EI++ P +++L I
Sbjct: 47 VIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGI 101
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 48.9 bits (117), Expect = 4e-08
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G G++V + GS AAL G + D+IL+V+ V G V +LR
Sbjct: 31 ISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90
Query: 84 NCPVNNISIVV-RDRPFE 100
N N + +++ R P
Sbjct: 91 NAG-NPVRLLLIRRLPLL 107
Score = 32.3 bits (74), Expect = 0.038
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ L+ S+A+ +G + + IL V+ NV G+ ++ E++ A + L +
Sbjct: 48 VKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100
Score = 31.6 bits (72), Expect = 0.061
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 122 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
+ L+ S+A+ +G + + IL V+ NV G+ V + G +RL+
Sbjct: 48 VKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEV---LRNAGNPVRLL 99
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 48.9 bits (117), Expect = 5e-08
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
+G G+FV V EG A G ++ DQI++V+G ++ G + +LRN
Sbjct: 29 MGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT 88
Query: 86 PVNNISIVV-RDRP 98
N+ V+ R++P
Sbjct: 89 K-GNVRFVIGREKP 101
Score = 35.0 bits (81), Expect = 0.003
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 20/99 (20%)
Query: 102 NVTLHKDSAG--------HVGFQFKRGQ----IIRLVKESSASRNG-LLTDHHILEVNGQ 148
V L KD G VG + + + + +A R+G + + I+EV+G
Sbjct: 12 PVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGI 71
Query: 149 NVVGLKNDSAGHVGFQFKR-GQIIRLV---KESSASRNG 183
++VG+ + A V + +R V ++ S +G
Sbjct: 72 SLVGVTQNFAATV---LRNTKGNVRFVIGREKPSGPSSG 107
Score = 31.9 bits (73), Expect = 0.050
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ + + +A R+G + + I+EV+G ++VG+ ++ + I
Sbjct: 44 VKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 48.9 bits (117), Expect = 5e-08
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 30 GLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88
G+ + H G++V V A G + GD++L VNG ++ G+ Q LRN
Sbjct: 34 GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-Q 92
Query: 89 NISIVVRDRP 98
+ +++
Sbjct: 93 VVHLLLEKGQ 102
Score = 33.1 bits (76), Expect = 0.020
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 19/91 (20%)
Query: 100 ERNVTLHKDSAG----------HVGFQFKRGQ----IIRLVKESSASRNGLLTDH-HILE 144
V L K+ G + ++ + +A +G + +L
Sbjct: 10 IFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 69
Query: 145 VNGQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
VNG ++ G + A + GQ++ L+
Sbjct: 70 VNGVSLEGATHKQAVET---LRNTGQVVHLL 97
Score = 31.9 bits (73), Expect = 0.041
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII--RLVKESSASRNGLLTDH-HILEVNGQNVVGLKD 203
G +V L G V + G I ++ + +A +G + +L VNG ++ G
Sbjct: 23 GISVTVL--FDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH 80
Query: 204 KEIREIVEKAPCVINLTI 221
K+ E + V++L +
Sbjct: 81 KQAVETLRNTGQVVHLLL 98
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 48.4 bits (116), Expect = 5e-08
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
V + V+ G PA G ++ GD++L V+G + G+ + ++L+ C ++++
Sbjct: 32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEY 90
Query: 97 RPFERNV 103
E V
Sbjct: 91 DVSETAV 97
Score = 31.0 bits (71), Expect = 0.090
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 103 VTLHKDSAGHVGFQFKRGQ-----------IIRLVKESSASRNGLLTDH-HILEVNGQNV 150
VTLHK+ GF + G I + A R G + +L V+G +
Sbjct: 7 VTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRL 65
Query: 151 VGLKNDSAGHVGFQFKR-GQIIRLV 174
+G + A + K+ GQ L+
Sbjct: 66 LGTTHAEAMSI---LKQCGQEAALL 87
Score = 30.3 bits (69), Expect = 0.13
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I + A R G + +L V+G ++G E I+++ L I
Sbjct: 36 ITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 48.5 bits (116), Expect = 5e-08
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G I G+F+ + G AA+ G L D +L+VN V+ + L+
Sbjct: 21 IAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK 80
Query: 84 NCPVNNISIVVRDRP 98
+ +VVR R
Sbjct: 81 EAG-PVVRLVVRRRQ 94
Score = 33.1 bits (76), Expect = 0.015
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 103 VTLHKDSAGHVGFQFKRGQ------------IIRLVKESSASRNGLL-TDHHILEVNGQN 149
+ L + ++G +GF G I +++ +A+ +G L + +L VN +
Sbjct: 8 IVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 150 VVGLKNDSAGHVGFQFKR-GQIIRLV 174
V + + A K G ++RLV
Sbjct: 67 VSEVVHSRAVEA---LKEAGPVVRLV 89
Score = 30.8 bits (70), Expect = 0.098
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I +++ +A+ +G L + +L VN +V + E +++A V+ L +
Sbjct: 38 ITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 48.4 bits (116), Expect = 5e-08
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
G+FV + + S G ++ GDQI+ V+G + G Q +LR+ + + +
Sbjct: 32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG-QTVLLTLM 90
Query: 96 DRPFERNV 103
R E +V
Sbjct: 91 -RRGETSV 97
Score = 34.2 bits (79), Expect = 0.007
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 17/85 (20%)
Query: 103 VTLHKDSAGHVGFQFKRGQ-----------IIRLVKESSASRNGLLTDH-HILEVNGQNV 150
V L K+ G +G + + K S+ +G + I+ V+G N+
Sbjct: 8 VELTKNVQG-LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNL 66
Query: 151 VGLKNDSAGHVGFQFKR-GQIIRLV 174
G N A V + GQ + L
Sbjct: 67 QGFTNQQAVEV---LRHTGQTVLLT 88
Score = 30.7 bits (70), Expect = 0.097
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ + K S+ +G + I+ V+G N+ G +++ E++ + LT+
Sbjct: 37 VKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 48.1 bits (115), Expect = 6e-08
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+FV + A G L GD IL++NG ++ L+ + +VV
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVL- 78
Query: 97 RPFERNVTLH 106
R E + H
Sbjct: 79 RDLEHHHHHH 88
Score = 37.7 bits (88), Expect = 3e-04
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 149 NVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEI 206
V+ +K+ + G + + + + A+++G L IL++NG + +
Sbjct: 3 GVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Query: 207 REIVEKAPCVINLTIM---PSYVYHH 229
R+++EK+ + L ++ + +HH
Sbjct: 63 RKLIEKSRGKLQLVVLRDLEHHHHHH 88
Score = 31.9 bits (73), Expect = 0.030
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 102 NVTLHKDSAGHVGFQFKRGQII---RLVKESSASRNG-LLTDHHILEVNGQNVVGLKNDS 157
V L K A + + G I + + A+++G L IL++NG +
Sbjct: 3 GVLLMKSRANE-EYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTD 61
Query: 158 A 158
A
Sbjct: 62 A 62
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 48.4 bits (116), Expect = 6e-08
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ V + + PA G L GD +L +NG++ G Q +R + +V+R
Sbjct: 37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG-PQLHLVIR 95
Query: 96 DRP 98
Sbjct: 96 RPL 98
Score = 37.7 bits (88), Expect = 5e-04
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ---------IIRLVKESSASRNGLL-TDHHILEVNGQNV 150
+V L + AG G G+ + L+K+ A R G L +L +NG++
Sbjct: 13 FSVELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71
Query: 151 VGLKNDSAGHVGFQFKR-GQIIRLV--KESSASRNG 183
GL + A + G + LV + S +G
Sbjct: 72 QGLTHAQAVER---IRAGGPQLHLVIRRPLSGPSSG 104
Score = 32.3 bits (74), Expect = 0.037
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ L+K+ A R G L +L +NG++ GL + E + ++L I
Sbjct: 42 VRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 48.7 bits (116), Expect = 6e-08
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 21 LCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALV--GLRFGDQILQVNGKTVAGSNM 75
+ D +G+ G V V V V G+PA L L GDQ++ +NG+ +A
Sbjct: 23 MKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH 82
Query: 76 HQVHALLRNCPVNNISIVV 94
QV ++ + ++
Sbjct: 83 DQVVLFIKASCERHSGELM 101
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRN--GLLTDHHILEVNGQNVV 151
+ + D G GF K G + R+ + A L ++ +NG+++
Sbjct: 19 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 152 GLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLT 186
+D Q++ +K S +G L
Sbjct: 79 EHTHD------------QVVLFIKASCERHSGELM 101
Score = 34.0 bits (78), Expect = 0.008
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRN--GLLTDHHILEVNGQNVVG 200
++ +K D G GF K G + R+ + A L ++ +NG+++
Sbjct: 20 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 79
Query: 201 LKDKE----IREIVEKAPCVINLTIMPS 224
+ I+ E+ + L + P+
Sbjct: 80 HTHDQVVLFIKASCERHSGELMLLVRPN 107
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 48.5 bits (116), Expect = 6e-08
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+ + + G PA G L GD IL VNG + + + +L I V
Sbjct: 35 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVY 93
Query: 97 RPFERN 102
E +
Sbjct: 94 VALEHH 99
Score = 36.9 bits (86), Expect = 8e-04
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
R V L K+ +G G+ I + A R G L IL VNG N+
Sbjct: 10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 152 GLKNDSA 158
K+ A
Sbjct: 70 DTKHKEA 76
Score = 33.5 bits (77), Expect = 0.013
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 148 QNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 199
+ V+ LK D G +G G+ I + A R G L IL VNG N+
Sbjct: 11 RKVLLLKEDHEG-LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 200 GLKDKEIREIVEKAPCVINLTI----MPSYVYHH 229
K KE I+ + I + + + +HH
Sbjct: 70 DTKHKEAVTILSQQRGEIEFEVVYVALEHHHHHH 103
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 49.0 bits (117), Expect = 7e-08
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 21 LCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH 76
L KD IG+ + + +++ V + +PAAL G + GD+I VNG+++ G
Sbjct: 25 LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 84
Query: 77 QVHALLRNCPVNNISIVVRDRP 98
+V +++ ++I
Sbjct: 85 EVAKMIQEVK-GEVTIHYNKLQ 105
Score = 39.7 bits (93), Expect = 1e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
VTL KD+ +G G I+++ + A+ +G + I VNG+++
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79
Query: 152 GLKNDSA 158
G
Sbjct: 80 GKTKVEV 86
Score = 33.6 bits (77), Expect = 0.017
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 201
V L+ D+ +G G I+++ + A+ +G + I VNG+++ G
Sbjct: 22 KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 81
Query: 202 KDKEIREIVEKAPCVINLTI 221
E+ +++++ + +
Sbjct: 82 TKVEVAKMIQEVKGEVTIHY 101
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 48.0 bits (115), Expect = 7e-08
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP-VNNISIVVR 95
E +++ + A G LR GD+++ V+G V G + V L++ ++++ VR
Sbjct: 27 EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVR 86
Query: 96 DRP 98
Sbjct: 87 QTR 89
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
E+++ L + G GF+ G I +V +A +G L + ++ V+G V+
Sbjct: 3 EQDIFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61
Query: 152 GLKNDSA 158
G +
Sbjct: 62 GKSHQLV 68
Score = 27.2 bits (61), Expect = 1.6
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 201
+ L G GF+ G I +V +A +G L + ++ V+G V+G
Sbjct: 5 DIFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
Query: 202 KDKEIREIVEKAPCVINLTI 221
+ + +++++A ++ +
Sbjct: 64 SHQLVVQLMQQAAKQGHVNL 83
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 48.0 bits (115), Expect = 7e-08
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ +++ V G A G L+ GDQ+L VNG +V G + LL+ ++ +VVR
Sbjct: 29 NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVR 87
Query: 96 DRP 98
P
Sbjct: 88 SGP 90
Score = 35.7 bits (83), Expect = 0.002
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
V L K G +GF G+ I R++ A R+G L +L VNG +V
Sbjct: 6 SGVVELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 64
Query: 152 GLKNDSA 158
G +++ A
Sbjct: 65 GEQHEKA 71
Score = 32.2 bits (74), Expect = 0.032
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 201
VV L G +GF G+ I R++ A R+G L +L VNG +V G
Sbjct: 8 VVELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 66
Query: 202 KDKEIREIVEKAPCVINLTI 221
+ ++ E+++ A + L +
Sbjct: 67 QHEKAVELLKAAQGSVKLVV 86
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 48.1 bits (115), Expect = 7e-08
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G + + G++V ++E AAL G L+ GD+IL VNG+ + L R
Sbjct: 24 IVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 83
Query: 84 NCPVNNISIVVRDRP 98
N +S+ V+ R
Sbjct: 84 NAG-YAVSLRVQHRL 97
Score = 30.4 bits (69), Expect = 0.15
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ R+ + +A+ +G L + IL VNGQ++ L ++ ++ A ++L +
Sbjct: 41 VSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 48.2 bits (115), Expect = 8e-08
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVVRD 96
+ + G PA G L GD++ +NG ++ G + A +R ++++ +
Sbjct: 38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVH 97
Query: 97 RP 98
P
Sbjct: 98 CP 99
Score = 37.4 bits (87), Expect = 5e-04
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 95 RDRPFERNVTLHKDSAGHVGFQFKRGQ---------IIRLVKESSASRNGLLT--DHHIL 143
R V L K +G I L+ A R+G L+ D +
Sbjct: 5 SSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDR-LT 63
Query: 144 EVNGQNVVGLKNDSA 158
+NG ++VGL +
Sbjct: 64 AINGTSLVGLPLAAC 78
Score = 33.2 bits (76), Expect = 0.017
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 170 IIRLVKESSASRNGLLT--DHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I L+ A R+G L+ D + +NG ++VGL + V + ++T+
Sbjct: 41 IANLLHGGPAERSGALSIGDR-LTAINGTSLVGLPLAACQAAVRETKSQTSVTL 93
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 48.1 bits (115), Expect = 8e-08
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
G G EG+F+ V A G LR G ++L+VN +++ G + LLR
Sbjct: 31 ARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90
Query: 84 NCPVNNISIVVRDR 97
+ + ++++V D
Sbjct: 91 SVG-DTLTVLVCDG 103
Score = 32.0 bits (73), Expect = 0.042
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRG-QIIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G ++ G AG+ G I ++ +A R+G L +LEVN Q+++GL
Sbjct: 24 GISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG 83
Query: 205 EIREIVEKAPCVINLTI 221
E +++ + + +
Sbjct: 84 EAVQLLRSVGDTLTVLV 100
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 48.2 bits (115), Expect = 1e-07
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVVR 95
E + V V PAA G + GD I+ +N V G V L ++ P+ +++V+
Sbjct: 44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103
Query: 96 DRP 98
Sbjct: 104 RGY 106
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 100 ERNVTLHKDSAGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVV 151
+ TL K + G GF G Q+ ++ + A+++G + T I+ +N V+
Sbjct: 20 FLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
Query: 152 GLKNDSAGHVGFQFKRGQIIRLV 174
G + + GQ + LV
Sbjct: 79 GHTHADVVKLFQSVPIGQSVNLV 101
Score = 31.2 bits (71), Expect = 0.090
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG-------QIIRLVKESSASR 181
SS S D L+ + LK + G GF G Q+ ++ + A++
Sbjct: 2 SSGSSGLFTRDASQLKGTFLSTT-LKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQ 59
Query: 182 NG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPC--VINLTI 221
+G + T I+ +N V+G ++ ++ + P +NL +
Sbjct: 60 DGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVL 102
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 48.2 bits (115), Expect = 1e-07
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G + + G ++ + G A G L G Q+L+ NG + +V +++
Sbjct: 36 IVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95
Query: 84 NCPVNNISIVVRDRP 98
I VR
Sbjct: 96 QQS-GEAEICVRLDL 109
Score = 37.4 bits (87), Expect = 6e-04
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 109 SAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRG 168
S+GH F R +I R K+ + S NGL G +VG K + G
Sbjct: 5 SSGHYIFPHARIKITRDSKDHTVSGNGL----------GIRIVGGKEIPGHSG----EIG 50
Query: 169 QII-RLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I +++ SA + G L +LE NG + +E++ I+ + + +
Sbjct: 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICV 105
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 48.3 bits (115), Expect = 1e-07
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 15 QMTKLFLCKDIHGKIGLRVA------AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNG 67
++ + +D +GL+V + F+ V++GS A VG LR GD++L+ NG
Sbjct: 36 RLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
Query: 68 KTVAGSNMHQVHALLRNC-PVNNISIVVR 95
+ + G+ +V+ ++ P + +VV
Sbjct: 96 RLLQGATFEEVYNIILESKPEPQVELVVS 124
Score = 32.1 bits (73), Expect = 0.057
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNG-LLTDHHILEVNGQ 148
++ ++ +DS +G + G+ I ++ K S A G L +LE NG+
Sbjct: 37 LKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGR 96
Query: 149 NVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG 183
+ G + ++ + K + LV S +G
Sbjct: 97 LLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131
Score = 29.4 bits (66), Expect = 0.48
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 132 SRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ----------IIRLVKESSASR 181
S++G IL + DS +G + G+ I ++ K S A
Sbjct: 21 SKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADT 80
Query: 182 NG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214
G L +LE NG+ + G +E+ I+ ++
Sbjct: 81 VGHLRPGDEVLEWNGRLLQGATFEEVYNIILESK 114
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 47.7 bits (114), Expect = 1e-07
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
++V + E PA G +R GDQI+++NG++ + L+++ + ++++
Sbjct: 35 KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLK 93
Query: 96 DRP 98
Sbjct: 94 RGT 96
Score = 36.9 bits (86), Expect = 7e-04
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVVG 152
V + K + G GF + G+ ++RL ++ A RNG + I+E+NG++
Sbjct: 13 FTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRD 71
Query: 153 LKNDSAGHVGFQFKR-GQIIRLV 174
+ + A + K G+ +RL+
Sbjct: 72 MTHARAIEL---IKSGGRRVRLL 91
Score = 32.3 bits (74), Expect = 0.028
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 201
V ++ + G GF + G+ ++RL ++ A RNG + I+E+NG++ +
Sbjct: 14 TVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM 72
Query: 202 KDKEIREIVEKAPCVINLTI 221
E+++ + L +
Sbjct: 73 THARAIELIKSGGRRVRLLL 92
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 47.3 bits (113), Expect = 1e-07
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
E + V +++G AAL +R GD+++ +NG + GS + L++ + ++VR
Sbjct: 34 CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSR-QEALILIKGSF-RILKLIVR 91
Query: 96 DRP 98
R
Sbjct: 92 RRN 94
Score = 28.1 bits (63), Expect = 0.80
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 96 DRPFERNVTLHKDSAGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNG 147
+ V + GF K G + ++ A+ + + T ++ +NG
Sbjct: 6 SGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNING 65
Query: 148 QNVVG 152
+ G
Sbjct: 66 TPLYG 70
Score = 25.8 bits (57), Expect = 6.0
Identities = 6/54 (11%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 169 QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ ++ A+ + + T ++ +NG + G + + + +++ + ++ L +
Sbjct: 38 TVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEAL-ILIKGSFRILKLIV 90
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 47.9 bits (114), Expect = 1e-07
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
G+F+ + G A G L D++L+VNG V+G ++ QV ++ N+ I VR
Sbjct: 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVR 122
Score = 39.8 bits (93), Expect = 1e-04
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G + + G + G I RLV A GLL + +LEVNG V G
Sbjct: 45 GFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104
Query: 205 EIREIVEKAPCVINLTIMPS 224
++ +++ + +T+ P+
Sbjct: 105 QVTDMMIANSRNLIITVRPA 124
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 46.9 bits (112), Expect = 2e-07
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + + +G A L GD IL VNG+ ++ + + L+ + + V+
Sbjct: 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG-KEVVLEVK 87
Score = 37.6 bits (88), Expect = 3e-04
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
R VT+ K AG +G K G+ I ++ K +A + L IL VNG+++
Sbjct: 5 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64
Query: 152 GLKNDSA 158
+D A
Sbjct: 65 SATHDEA 71
Score = 29.9 bits (68), Expect = 0.19
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I ++ K +A + L IL VNG+++ E + ++K + L +
Sbjct: 34 ISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 47.3 bits (113), Expect = 2e-07
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVV 94
++V + A G L+ GD++++VNG +AG + +V +LLR+ + +S++V
Sbjct: 38 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97
Query: 95 R 95
Sbjct: 98 F 98
Score = 35.0 bits (81), Expect = 0.004
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 100 ERNVTLHKDSAGHVGFQFKRG----------QIIRLVKESSASRNG-LLTDHHILEVNGQ 148
N+ L K + G GF + ++ +A ++G L ++EVNG
Sbjct: 12 RLNIQLKKGTEGL-GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 149 NVVGLKNDSAGHVGFQFKRGQIIRLV 174
++ G + + K + L+
Sbjct: 71 DLAGKSQEEVVSLLRSTKMEGTVSLL 96
Score = 30.7 bits (70), Expect = 0.11
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
G ++ G + ++ +A ++G L ++EVNG ++ G +E
Sbjct: 25 GFSITSRDVTIGGSAPIY-----VKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 79
Query: 206 IREIVEKAPCVINLTI 221
+ ++ +++
Sbjct: 80 VVSLLRSTKMEGTVSL 95
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 47.4 bits (113), Expect = 2e-07
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G + G+FV V EG A G ++ D +++V+G ++ G ++LRN
Sbjct: 24 MGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 83
Query: 86 PVNNISIVV-RDRP 98
+ ++ R+RP
Sbjct: 84 K-GRVRFMIGRERP 96
Score = 34.7 bits (80), Expect = 0.006
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 102 NVTLHKDSAG--------HVGFQFKRGQ----IIRLVKESSASRNG-LLTDHHILEVNGQ 148
V L KDS G G + + + + +A R+G + + ++EV+G
Sbjct: 7 PVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 66
Query: 149 NVVGLKNDSAGHVGFQFKR-GQIIRLV 174
++VG+ A V + +R +
Sbjct: 67 SLVGVTQSFAASV---LRNTKGRVRFM 90
Score = 32.0 bits (73), Expect = 0.044
Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ + + +A R+G + + ++EV+G ++VG+ ++ + I
Sbjct: 39 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 46.9 bits (112), Expect = 2e-07
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + V E A G L GDQIL+VNG + + + +LR P + + +
Sbjct: 29 LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLY 87
Query: 96 DRP 98
Sbjct: 88 RDE 90
Score = 35.4 bits (82), Expect = 0.002
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLLTDH-HILEVNGQNV 150
E + + K G +G G I + +E +A ++G L ILEVNG ++
Sbjct: 5 ETTIEISKGRTG-LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 151 VGLKNDSAGHVGFQFKR-GQIIRLV 174
+D A +V ++ Q +RL
Sbjct: 64 RKATHDEAINV---LRQTPQRVRLT 85
Score = 31.5 bits (72), Expect = 0.054
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I + +E +A ++G L ILEVNG ++ E ++ + P + LT+
Sbjct: 34 IHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTL 86
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 46.5 bits (111), Expect = 2e-07
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 31 LRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN- 89
+ + G V + GL+ GD I++VN K V +QV +L P +
Sbjct: 20 IADSPGGGGQRVKQI--VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSE 77
Query: 90 ISIVVRDR 97
++++V+ +
Sbjct: 78 VTLLVQRQ 85
Score = 35.3 bits (82), Expect = 0.002
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 101 RNVTLHKDSAGHVGF-----QFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKN 155
V + K G GF GQ ++ + +S GL I+EVN +NV L +
Sbjct: 5 ITVHIVKGPMG-FGFTIADSPGGGGQRVKQIVDS-PRSRGLKEGDLIVEVNKKNVQALTH 62
Query: 156 DSAGHVGFQFKRGQIIRLV 174
+ + + +G + L+
Sbjct: 63 NQVVDMLVESPKGSEVTLL 81
Score = 29.6 bits (67), Expect = 0.24
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 166 KRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 201
GQ ++ + +S GL I+EVN +NV L
Sbjct: 26 GGGQRVKQIVDS-PRSRGLKEGDLIVEVNKKNVQAL 60
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 47.0 bits (112), Expect = 2e-07
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + V E AA G L GDQIL+VNG + S+ + LR P + +VV
Sbjct: 42 LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVY 100
Query: 96 DRPFERNVTLHKDSAG 111
S+G
Sbjct: 101 RDEAHYRDEESGPSSG 116
Score = 36.2 bits (84), Expect = 0.002
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ--------IIRLVKESSASRNG-LLTDHHILEVNGQNV 150
E + + K +G +G G+ I + +E +A+R+G L ILEVNG ++
Sbjct: 18 EMIIEISKGRSG-LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 151 VGLKNDSAGHVGFQFKR-GQIIRLV 174
++ A ++ Q +RLV
Sbjct: 77 RNSSHEEAITA---LRQTPQKVRLV 98
Score = 32.8 bits (75), Expect = 0.024
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ--------IIRLVKESSASRNG-LLTDHHILEVNGQNVVG 200
++ + +G +G G+ I + +E +A+R+G L ILEVNG ++
Sbjct: 20 IIEISKGRSG-LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRN 78
Query: 201 LKDKEIREIVEKAPCVINLTI 221
+E + + P + L +
Sbjct: 79 SSHEEAITALRQTPQKVRLVV 99
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 47.5 bits (113), Expect = 2e-07
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVV- 94
E + + + PAAL G + GD I+ VN V G QV + ++ P+ + + +
Sbjct: 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 102
Query: 95 RDRPFERN 102
R P +
Sbjct: 103 RGYPLPFD 110
Score = 37.5 bits (87), Expect = 7e-04
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 100 ERNVTLHKDSAGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVV 151
+ L K S G GF G QI LV + A+ +G + T I+ VN V+
Sbjct: 19 FIHTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77
Query: 152 GLKNDSAGHVGFQFKRGQIIRLV 174
G + + G + L
Sbjct: 78 GHTHAQVVKIFQSIPIGASVDLE 100
Score = 29.4 bits (66), Expect = 0.42
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 169 QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPC--VINLTI 221
QI LV + A+ +G + T I+ VN V+G ++ +I + P ++L +
Sbjct: 46 QIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLEL 101
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 47.1 bits (112), Expect = 3e-07
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 21 LCKDIHGKIGLRV---AAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH 76
L KD IG+ + A +++ V + +PAAL G + GD+I VNG+++ G
Sbjct: 30 LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 89
Query: 77 QVHALLRNCPVNNISIVVR 95
+V +++ ++I
Sbjct: 90 EVAKMIQEVK-GEVTIHYN 107
Score = 40.9 bits (96), Expect = 3e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVV 151
VTL KD+ +G G I+++ + A+ +G + I VNG+++
Sbjct: 25 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 84
Query: 152 GLKNDSA 158
G
Sbjct: 85 GKTKVEV 91
Score = 34.7 bits (80), Expect = 0.005
Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASR 181
+S L T++ + V L+ D+ +G G I+++ + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAAL 65
Query: 182 NGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+G + I VNG+++ G E+ +++++ + +
Sbjct: 66 DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 106
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 46.6 bits (111), Expect = 3e-07
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
G+FV + EG A G L+ GD++L +NG V + +LL I++++
Sbjct: 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLER 96
Query: 97 RP 98
Sbjct: 97 EA 98
Score = 31.9 bits (73), Expect = 0.044
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ-------------IIRLVKESSASRNGLL-TDHHILEV 145
L + G +GF G+ + R+ + +A R G L +L +
Sbjct: 8 RHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
Query: 146 NGQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
NG +V ++D A + I L+
Sbjct: 67 NGVDVTEARHDHAVSL---LTAASPTIALL 93
Score = 30.4 bits (69), Expect = 0.17
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ R+ + +A R G L +L +NG +V + ++ A I L +
Sbjct: 42 VSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 46.6 bits (111), Expect = 3e-07
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG+FV + + PAA G L+ D+I++VNG+ ++ + Q + I + V
Sbjct: 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAK-EPIVVQVLR 99
Query: 97 RP 98
R
Sbjct: 100 RT 101
Score = 32.4 bits (74), Expect = 0.032
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ---------------IIRLVKESSASRNGLLTDH-HIL 143
+ LH+DS +GF G+ + ++V A++ G L H I+
Sbjct: 9 SLTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 144 EVNGQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
EVNG+++ +D A FK + I +
Sbjct: 68 EVNGRDLSRATHDQAVEA---FKTAKEPIVVQ 96
Score = 30.1 bits (68), Expect = 0.23
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ ++V A++ G L H I+EVNG+++ + E + A I + +
Sbjct: 45 VSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 46.6 bits (111), Expect = 3e-07
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV- 94
G++V V +G A + G L GDQ+L V+G+++ G + + L+ + +++ V
Sbjct: 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVA 95
Query: 95 RDRPFER 101
+ R
Sbjct: 96 KQGAIRR 102
Score = 33.5 bits (77), Expect = 0.012
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
G ++V K +G + +VK +A +G L +L V+G+++VGL +
Sbjct: 24 GLSIVAAKGAGQDKLGIY-----VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 78
Query: 206 IREIVEKAPCVINLTI 221
E++ + V+ L +
Sbjct: 79 AAELMTRTSSVVTLEV 94
Score = 30.8 bits (70), Expect = 0.099
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 122 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
+ +VK +A +G L +L V+G+++VGL + A + R ++ L
Sbjct: 42 VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL---MTRTSSVVTLE 93
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 46.6 bits (111), Expect = 3e-07
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
++V + E PA G +R GD+IL++NG+T + L++N + + ++
Sbjct: 50 DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLK 106
Score = 32.7 bits (75), Expect = 0.024
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASR 181
+S L T++ + V L+ + G GF + G+ ++RL ++ A R
Sbjct: 6 HHSSGVDLGTENLYFQSMDFYTVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAER 64
Query: 182 NG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+G + ILE+NG+ +K E+++ + L +
Sbjct: 65 SGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 45.8 bits (109), Expect = 4e-07
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKD 203
+V + ++ +G K + + R++ R G L I E+NG +V
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63
Query: 204 KEIREIVEKAPCVINLTIMPSY 225
+++++++ + I I+PSY
Sbjct: 64 EQLQKMLREMRGSITFKIVPSY 85
Score = 41.9 bits (99), Expect = 1e-05
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 21 LCKDIHGKIGLRVAAIHEG-VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQV 78
K+ +G+ + V + G G L GD+I ++NG +VA + Q+
Sbjct: 7 FQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQL 66
Query: 79 HALLRNCPVNNISIVVR 95
+LR +I+ +
Sbjct: 67 QKMLREMR-GSITFKIV 82
Score = 41.6 bits (98), Expect = 1e-05
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLK 154
R V K++ +G K + + R++ R G L I E+NG +V
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62
Query: 155 NDSA 158
+
Sbjct: 63 VEQL 66
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 46.4 bits (110), Expect = 4e-07
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 30 GLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89
G +A G V ++ + GL+ GD I ++ + V QV +L+ PV
Sbjct: 26 GFAIADSPTGQKVKMILDSQWCQ--GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGA 83
Query: 90 -ISIVVRDRPFERNVTLHKDSAG 111
+ +++ K +G
Sbjct: 84 DVPLLILRGGPPSPTKTAKMGSG 106
Score = 36.4 bits (84), Expect = 0.001
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 95 RDRPFERNVTLHKDSAGHVGF---QFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVV 151
+ + L K G GF GQ ++++ +S + GL I E+ QNV
Sbjct: 8 KKAGLLVTIPLIKGPKG-FGFAIADSPTGQKVKMILDSQWCQ-GLQKGDIIKEIYHQNVQ 65
Query: 152 GLKNDSAGHVGFQFKRGQIIRLV 174
L + V QF G + L+
Sbjct: 66 NLTHLQVVEVLKQFPVGADVPLL 88
Score = 31.7 bits (72), Expect = 0.062
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 167 RGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAP 214
GQ ++++ +S + GL I E+ QNV L ++ E++++ P
Sbjct: 34 TGQKVKMILDSQWCQ-GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP 80
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 45.7 bits (109), Expect = 4e-07
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G IG + +++ + EG A G L+ GD++L VN + + A L+
Sbjct: 20 IAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK 79
Query: 84 NCPVNNISIVVRDRP 98
N + + + V +P
Sbjct: 80 NTS-DMVYLKVA-KP 92
Score = 32.3 bits (74), Expect = 0.028
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 101 RNVTLHKDS-------AGHVGFQFKRGQ----IIRLVKESSASRNG-LLTDHHILEVNGQ 148
V L K AG +G Q G I ++++ +A ++G L +L VN
Sbjct: 5 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
Query: 149 NVVGLKNDSA 158
N+ ++++ A
Sbjct: 65 NLQDVRHEEA 74
Score = 29.6 bits (67), Expect = 0.26
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 158 AGHVGFQFKRGQ----IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEK 212
AG +G Q G I ++++ +A ++G L +L VN N+ ++ +E ++
Sbjct: 21 AGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN 80
Query: 213 APCVINLTI 221
++ L +
Sbjct: 81 TSDMVYLKV 89
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 46.2 bits (110), Expect = 5e-07
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMH-QVHALLRNCPVNNISIVV 94
G+FV +QEGS A G L+ DQIL +NG+ + + H Q ++L+ + + +V+
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK-DTVQLVI 106
Query: 95 RDRPFERN 102
+
Sbjct: 107 ARGSLPQY 114
Score = 28.9 bits (65), Expect = 0.62
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG-LLTDHHILEVNGQNV-VGLKDK 204
G +VVGL++++ G +G F + + + S A R+G L IL +NGQ + + +
Sbjct: 35 GFSVVGLRSENRGELGI-F----VQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQ 89
Query: 205 EIREIVEKAPCVINLTI 221
+ I++KA + L I
Sbjct: 90 QAISILQKAKDTVQLVI 106
Score = 28.9 bits (65), Expect = 0.68
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNG-LLTDHHILEVNGQN 149
L K +G +GF + + + + S A R+G L IL +NGQ
Sbjct: 22 EVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQA 81
Query: 150 V 150
+
Sbjct: 82 L 82
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 46.2 bits (110), Expect = 5e-07
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVV 94
++V + A G L+ GD++++VNG + G + +V +LLR+ + +S++V
Sbjct: 57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
Query: 95 R 95
Sbjct: 117 F 117
Score = 35.1 bits (81), Expect = 0.004
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 72 GSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRG----------Q 121
GS+ H H S + N+ L K + G GF
Sbjct: 3 GSHHHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGL-GFSITSRDVTIGGSAPIY 61
Query: 122 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLV 174
+ ++ +A ++G L ++EVNG ++VG + + K + L+
Sbjct: 62 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115
Score = 30.8 bits (70), Expect = 0.13
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKE 205
G ++ G + ++ +A ++G L ++EVNG ++VG +E
Sbjct: 44 GFSITSRDVTIGGSAPIY-----VKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98
Query: 206 IREIVEKAPC--VINLTI 221
+ ++ ++L +
Sbjct: 99 VVSLLRSTKMEGTVSLLV 116
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 45.7 bits (109), Expect = 5e-07
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 21 LCKDIHGKIGLRVAAIHE--GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQ 77
L K +GL + GVFV + +G A G L GDQIL VNG+ V +
Sbjct: 10 LQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEA 69
Query: 78 VHALLRNCPVNNISIVVR 95
V ALL+ +++ V
Sbjct: 70 VAALLKCSL-GTVTLEVG 86
Score = 39.5 bits (93), Expect = 7e-05
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNG-LLTDHHILEVNGQNVVGL 153
+ L K +G + + +VK A +G L+ IL VNG++V
Sbjct: 6 LTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNA 65
Query: 154 KNDSAGHVGFQFKR-GQIIRLV 174
++ + K + L
Sbjct: 66 TQEAVAAL---LKCSLGTVTLE 84
Score = 33.4 bits (77), Expect = 0.010
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 151 VGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKD 203
+GL+ +G + + +VK A +G L+ IL VNG++V
Sbjct: 8 IGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
Query: 204 KEIREIVEKAPCVINLTI 221
+ + +++ + + L +
Sbjct: 68 EAVAALLKCSLGTVTLEV 85
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 45.8 bits (109), Expect = 5e-07
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
G+F+ V E SPA G L+ GD+I++V+G + ++ Q +R N + +V+
Sbjct: 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 96
Score = 34.6 bits (80), Expect = 0.005
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ----------------IIRLVKESSASRNGLLTDH-HI 142
R V L ++ + +G G+ I ++++S A +NG L I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 143 LEVNGQNVVGLKNDSAGHVGFQFKR-GQIIRLVKESSASR 181
+EV+G ++ ++ A ++ G + + +S S
Sbjct: 65 VEVDGMDLRDASHEQAVEA---IRKAGNPVVFMVQSIIST 101
Score = 32.7 bits (75), Expect = 0.021
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G ++VG + + + RG I ++++S A +NG L I+EV+G ++ +
Sbjct: 19 GISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE 78
Query: 205 EIREIVEKAPCVINLTI 221
+ E + KA + +
Sbjct: 79 QAVEAIRKAGNPVVFMV 95
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 46.2 bits (110), Expect = 5e-07
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
GV + V GSPA GLR GD IL + + V N V+ +R + I
Sbjct: 35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMV--QNAEDVYEAVRTQSQLAVQIRRGRE 92
Query: 98 PFERNVTL 105
VT
Sbjct: 93 TLTLYVTP 100
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 48.4 bits (116), Expect = 5e-07
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 26 HGKIGLRVAAI--HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLR 83
H +G++V G + V G AA G+ G + +V+ + + ++ + A +R
Sbjct: 228 HASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPI--NSADALVAAVR 285
Query: 84 NCPVNN-ISIVVRD---RPFERNVTL 105
+ +++ +D VTL
Sbjct: 286 SKAPGATVALTFQDPSGGSRTVQVTL 311
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 45.4 bits (108), Expect = 6e-07
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + + + +G A G + GD+IL +N ++ G + + LL+ +++ ++
Sbjct: 29 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIK 87
Query: 96 DRP 98
+
Sbjct: 88 KQT 90
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQNVVG 152
V L + +G + I L K A R G + IL +N ++ G
Sbjct: 7 YTVELKRYGGP-LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 65
Query: 153 LKNDSA 158
A
Sbjct: 66 KPLSEA 71
Score = 34.6 bits (80), Expect = 0.004
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
I L K A R G + IL +N ++ G E +++ A + L I
Sbjct: 34 ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK 88
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 47.3 bits (112), Expect = 6e-07
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC 85
G + G+FV V EG A G ++ D +++V+G ++ G ++LRN
Sbjct: 100 MGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159
Query: 86 PVNNISIVVR 95
+ ++
Sbjct: 160 K-GRVRFMIG 168
Score = 37.2 bits (86), Expect = 0.001
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 18/147 (12%)
Query: 43 CLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFER- 101
L +E PA + F +QV + + + R E
Sbjct: 23 GLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELF 82
Query: 102 NVTLHKDSAG--------HVGFQFKRGQ----IIRLVKESSASRNG-LLTDHHILEVNGQ 148
V L KDS G G + + + + +A R+G + + ++EV+G
Sbjct: 83 PVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 149 NVVGLKNDSAGHVGFQFKR-GQIIRLV 174
++VG+ A V + +R +
Sbjct: 143 SLVGVTQSFAASV---LRNTKGRVRFM 166
Score = 33.0 bits (75), Expect = 0.038
Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ + + +A R+G + + ++EV+G ++VG+ ++ + I
Sbjct: 115 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 48.2 bits (115), Expect = 6e-07
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 27 GKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
+ + V GSPA GL+ G I+ +NG + + L +
Sbjct: 79 TLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESE--LLQGSTR 136
Query: 87 VNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIR 124
I + + VT G R ++
Sbjct: 137 QLQIGVYKEVVGEDGEVTGGVVPIGETTMPASR-SLVD 173
Score = 30.1 bits (68), Expect = 0.52
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 96 DRPFERNVTLHKDSAGHVGFQF-----------KRGQIIRLVKESSASRNGLLTDHHILE 144
D F + +L + GF + I +V S A GL H I+
Sbjct: 57 DNGFSKIDSLLDEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMM 116
Query: 145 VNGQNVVGLKNDSAGHVGFQFKRGQIIRLVK 175
+NG + + + + + V
Sbjct: 117 MNGDYITKKVESELLQGSTRQLQIGVYKEVV 147
Score = 29.0 bits (65), Expect = 1.3
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 167 RGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMP 223
I +V S A GL H I+ +NG + K E+++ + + + +
Sbjct: 91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDYITK---KVESELLQGSTRQLQIGVYK 144
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 45.4 bits (108), Expect = 6e-07
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 139 DHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLL-TDHHILE 192
HH + ++ + + +G K + + R++ R G L ILE
Sbjct: 4 HHHHHSGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILE 63
Query: 193 VNGQNVVGLKDKEIREIVEKAPCVINLTIMPSY 225
+NG NV ++++ +++ +I+L ++P+
Sbjct: 64 INGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96
Score = 41.6 bits (98), Expect = 1e-05
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 21 LCKDIHGKIGLRVAAIHEG-VFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQV 78
K +G+ + + V + G G L GD+IL++NG V ++ Q+
Sbjct: 18 FEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQL 77
Query: 79 HALLRNCPVNNISIVV 94
++ IS+ V
Sbjct: 78 QKAMKETK-GMISLKV 92
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 45.5 bits (108), Expect = 7e-07
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCP 86
F+ +++G V + GD I +NG+ + G + V L+
Sbjct: 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK 77
Score = 34.7 bits (80), Expect = 0.004
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 94 VRDRPFERNVTLHKDSAGHVGFQFKRGQ-----IIRLVKESSASRNGLLT--DHHILEVN 146
++ E V ++K +G I R+ + DH I +N
Sbjct: 2 MKGIEKE--VNVYKSEDS-LGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDH-IESIN 57
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQI--IRLVKESSA 179
G+N+VG ++ + K+ ++ ++L++ +
Sbjct: 58 GENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKS 92
Score = 31.6 bits (72), Expect = 0.047
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 170 IIRLVKESSASRNGLLT--DHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
I R+ + DH I +NG+N+VG + ++ + +++ T+
Sbjct: 32 IKRIKDGGVIDSVKTICVGDH-IESINGENIVGWRHYDVAKKLKELKKEELFTM 84
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 45.8 bits (109), Expect = 7e-07
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+F+ ++ AA LR GD+I+ + G + G Q LL+N +I + V
Sbjct: 52 DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVV 110
Query: 96 DRPFERNVTL 105
++
Sbjct: 111 AGGDVSETSV 120
Score = 35.4 bits (82), Expect = 0.003
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 75 MHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQ----------IIR 124
MH H + ++ + R V + K +G G I
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGL-RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAM 59
Query: 125 LVKESSASRNGLL-TDHHILEVNGQNVVGLKNDSA 158
+ A++ L I+ + G + G+ + A
Sbjct: 60 MHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQA 94
Score = 30.8 bits (70), Expect = 0.13
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 129 SSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ----------IIRLVKESS 178
+S L T++ + G V +K +G G I +
Sbjct: 6 HHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGV 65
Query: 179 ASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
A++ L I+ + G + G+ + +++ A I + +
Sbjct: 66 AAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQV 109
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 45.4 bits (108), Expect = 8e-07
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 36 IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ G++V V SP+ G++ GD I++VNG+ + + ++ + + +
Sbjct: 33 VSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPL--VDSSELQEAVLTESPLLLEVRRG 90
Query: 96 DRPFERNVTL 105
+ ++
Sbjct: 91 NDDLLFSIAP 100
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 44.9 bits (107), Expect = 8e-07
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN-ISIVVR 95
E + + + PAAL G + GD I+ VN V G QV + ++ P+ + + +
Sbjct: 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 84
Score = 36.9 bits (86), Expect = 6e-04
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 102 NVTLHKDSAGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGL 153
+ L K S G GF G QI LV + A+ +G + T I+ VN V+G
Sbjct: 3 HTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 154 KNDSAGHVGFQFKRGQIIRLV 174
+ + G + L
Sbjct: 62 THAQVVKIFQSIPIGASVDLE 82
Score = 29.2 bits (66), Expect = 0.26
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 151 VGLKNDSAGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLK 202
L+ S G GF G QI LV + A+ +G + T I+ VN V+G
Sbjct: 4 TKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 203 DKEIREIVEKAPCVINLTI 221
++ +I + P ++ +
Sbjct: 63 HAQVVKIFQSIPIGASVDL 81
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 45.5 bits (108), Expect = 9e-07
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
G+F+ V E SPA G L+ GD+I++V+G + ++ Q +R N + +V+
Sbjct: 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 116
Score = 32.8 bits (75), Expect = 0.029
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQII-RLVKESSASRNGLLTDH-HILEVNGQNVVGLKDK 204
G ++VG + + + RG I ++++S A +NG L I+EV+G ++ +
Sbjct: 39 GISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE 98
Query: 205 EIREIVEKAPCVINLTI 221
+ E + KA + +
Sbjct: 99 QAVEAIRKAGNPVVFMV 115
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 45.4 bits (108), Expect = 9e-07
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
++V V A+ G L+ GDQI+ VNG+++ G + A+L+ ++++V
Sbjct: 52 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVL 110
Query: 96 DRP 98
Sbjct: 111 SSD 113
Score = 36.6 bits (85), Expect = 0.001
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 75 MHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQ----------IIR 124
MH H + ++ + P +++TL + G +GF G +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKT 59
Query: 125 LVKESSASRNGLLTDH-HILEVNGQNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
+ + +AS +G L I+ VNGQ++ G+ ++ A + KR + L+
Sbjct: 60 VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI---LKRTKGTVTLM 108
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 45.1 bits (107), Expect = 1e-06
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 7 SLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQI 62
+E++ + + K+ L K+ H +G+ + E + + + G PA G L GD I
Sbjct: 19 HMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 78
Query: 63 LQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
L VNG + + + +L I V
Sbjct: 79 LAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVV 110
Score = 31.7 bits (72), Expect = 0.060
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 127 KESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSA 179
SS G L G V L + +G G+ I + A
Sbjct: 9 HHSSGHIEG--RHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPA 66
Query: 180 SRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
R G L IL VNG N+ K KE I+ + I +
Sbjct: 67 DRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 44.8 bits (106), Expect = 1e-06
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVT 104
VQ S A+ GL+ GD+I+ V+G+ + + L+R+ P ++++ + + ++T
Sbjct: 11 VQPNSAASXAGLQAGDRIVXVDGQPL--TQWVTFVMLVRDNPGXSLALEIERQGSPLSLT 68
Query: 105 L 105
L
Sbjct: 69 L 69
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 44.6 bits (106), Expect = 1e-06
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLK 202
++ L + +G K+ + + R+++ +A R+GL+ + EVNG V +
Sbjct: 7 IIRLVKNREP-LGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKR 65
Query: 203 DKEIREIVEKAPCVINLTIMPSY 225
+EI +I+ ++ I I+P
Sbjct: 66 PEEIIQILAQSQGAITFKIIPGS 88
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVV 94
+ V + G A G + GD++ +VNG V ++ +L I+ +
Sbjct: 27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAITFKI 84
Score = 39.6 bits (93), Expect = 6e-05
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------IIRLVKESSASRNGLL-TDHHILEVNGQNVVGL 153
+ + L K+ +G K+ + + R+++ +A R+GL+ + EVNG V
Sbjct: 6 KIIRLVKNREP-LGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK 64
Query: 154 KNDSA 158
+ +
Sbjct: 65 RPEEI 69
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 44.2 bits (105), Expect = 2e-06
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISI-VVR 95
+GV+V V PAA L GD+I ++G+ + + Q+ + +R + + +R
Sbjct: 5 KGVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPI--NTSEQIVSYVREKQAGDRVRVTFIR 61
Query: 96 D-RPFERNVTL--HKDSAGHVG 114
D + E + L +G
Sbjct: 62 DRKQHEAELVLKPFPHHPNQIG 83
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 44.7 bits (106), Expect = 2e-06
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 39 GVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN---ISIVV 94
V V V EG A G + GD+I+ +NGK V + + A L+ I +VV
Sbjct: 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVV 103
Query: 95 RDRP 98
P
Sbjct: 104 AVCP 107
Score = 30.5 bits (69), Expect = 0.20
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLLTDH-HILEVNGQNV 150
+ + K + + G + + + +A R+G + I+ +NG+ V
Sbjct: 18 DVRLLRIKKEGS-LDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76
Query: 151 VGLKNDSAGHV--GFQFKRGQIIRLV 174
A + G I LV
Sbjct: 77 TDYTLAEAEAALQKAWNQGGDWIDLV 102
Score = 28.6 bits (64), Expect = 0.74
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 144 EVNGQNVVGLKNDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLLTDH-HILEVN 194
++ G++V L+ G + + G + + + +A R+G + I+ +N
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72
Query: 195 GQNVVGLKDKE----IREIVEKAPCVINLTI 221
G+ V E +++ + I+L +
Sbjct: 73 GKIVTDYTLAEAEAALQKAWNQGGDWIDLVV 103
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 44.2 bits (104), Expect = 2e-06
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 45 VQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR--DRPFERN 102
+ S AA + G ++ V+G L+ + +I V R+
Sbjct: 9 IAANSIAAEAQIAPGTELKAVDGIETP-DWDAVRLQLVDKIGDESTTITVAPFGSDQRRD 67
Query: 103 VTL 105
V L
Sbjct: 68 VKL 70
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 46.3 bits (109), Expect = 2e-06
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 6 PSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVG-LRFGDQ 61
P L + Q ++ + K G +G+ + E + + + +G A L GD
Sbjct: 68 PQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDA 127
Query: 62 ILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFE 100
IL VNG+ ++ + + L+ + V +
Sbjct: 128 ILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVS 166
Score = 35.5 bits (81), Expect = 0.010
Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)
Query: 87 VNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLT-DHHILEV 145
S +R ++L +D+ + G + + A+ G +
Sbjct: 16 CGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALL 75
Query: 146 NGQNVVGLKNDSAGHVGFQFKRGQ-------IIRLVKESSASRNGLL-TDHHILEVNGQN 197
+ V ++ AG +G K G+ I ++ K +A + L IL VNG++
Sbjct: 76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 135
Query: 198 VVGLKDKEIREIVEKAPCVI 217
+ E + ++K +
Sbjct: 136 LSSATHDEAVQALKKTGKEV 155
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 44.0 bits (104), Expect = 3e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+G+FV VQ PA+ + L+ GD+I+Q NG + Q +LL+ N + +++
Sbjct: 42 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIV 98
Score = 28.2 bits (63), Expect = 0.93
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 168 GQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
G + V+ + L I++ NG + + ++ + +++ + L I
Sbjct: 44 GIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97
Score = 25.9 bits (57), Expect = 6.0
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ--------------IIRLVKESSASRNGLLTDHHILEV 145
++ + + + +GF G + V+ + L I++
Sbjct: 10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQA 69
Query: 146 NGQNVVGLKNDSA 158
NG + + +++ A
Sbjct: 70 NGYSFINIEHGQA 82
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 44.3 bits (105), Expect = 3e-06
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G +G + ++V + +G A G L+ GD++L VN ++ + A+L+
Sbjct: 41 IAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK 100
Query: 84 NCPVNNISIVV-RDRP 98
N + + V +
Sbjct: 101 NTS-EVVYLKVGKPTT 115
Score = 30.4 bits (69), Expect = 0.16
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 102 NVTLHKDS-------AGHVGFQFKRGQ----IIRLVKESSASRNGLLTDH-HILEVNGQN 149
+ L K AG VG Q G + +++ +A ++G L +L VN +
Sbjct: 27 EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS 86
Query: 150 VVGLKNDSAGHVGFQFKR-GQIIRLV 174
+ + ++ A + K +++ L
Sbjct: 87 LEEVTHEEAVAI---LKNTSEVVYLK 109
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ +++ +A ++G L +L VN ++ + +E I++ V+ L +
Sbjct: 58 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 46.1 bits (110), Expect = 3e-06
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDR 97
G ++ V +PA GL+ D I+ +NG++V + + V +++ N+ + +
Sbjct: 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSV--VSANDVSDVIKRESTLNMVVRRGNE 311
Query: 98 PFERNVTL 105
V
Sbjct: 312 DIMITVIP 319
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 43.2 bits (102), Expect = 3e-06
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+G+FV VQ PA+ + L+ GD+I+Q NG + Q +LL+ I+VR+
Sbjct: 34 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92
Query: 97 RP 98
Sbjct: 93 VS 94
Score = 27.4 bits (61), Expect = 1.3
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 168 GQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
G + V+ + L I++ NG + + ++ + +++ + L I
Sbjct: 36 GIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 89
Score = 26.6 bits (59), Expect = 3.2
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ--------------IIRLVKESSASRNGLLTDHHILEVN 146
+ + + +GF G + V+ + L I++ N
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQAN 62
Query: 147 GQNVVGLKNDSA 158
G + + +++ A
Sbjct: 63 GYSFINIEHGQA 74
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 43.1 bits (102), Expect = 3e-06
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 30 GLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNN 89
G +A G V + + GL GD I+++N + V + +V +L++CP+ +
Sbjct: 24 GFTIADSPTGQRVKQILDIQGCP--GLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGS 81
Query: 90 -ISIVVR 95
S+++
Sbjct: 82 ETSLIIH 88
Score = 34.3 bits (79), Expect = 0.005
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 97 RPFERNVTLHKDSAGHVGFQF---KRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 153
+ +T+ K + G GF GQ ++ + + GL I+E+N QNV L
Sbjct: 8 QAELMTLTIVKGAQG-FGFTIADSPTGQRVKQILDIQGCP-GLCEGDLIVEINQQNVQNL 65
Query: 154 KNDSAGHVGFQFKRGQIIRLV 174
+ + G L+
Sbjct: 66 SHTEVVDILKDCPIGSETSLI 86
Score = 27.0 bits (60), Expect = 2.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 168 GQIIRLVKESSASRNGLLTDHHILEVNGQNVVGL 201
GQ ++ + + GL I+E+N QNV L
Sbjct: 33 GQRVKQILDIQGCP-GLCEGDLIVEINQQNVQNL 65
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 43.6 bits (103), Expect = 4e-06
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC----PVNNIS 91
+ +Q G A G L+ G IL+VNG T+ G + ++ + I
Sbjct: 31 QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYID 90
Query: 92 IVVRDRP 98
+V +
Sbjct: 91 FLVTEFN 97
Score = 33.9 bits (78), Expect = 0.007
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ--------IIRLVKESSASRNGLL-TDHHILEVNGQNV 150
+ K SA +G + G I+ + + SA G L H ILEVNG +
Sbjct: 6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTL 65
Query: 151 VGLKNDSA 158
G ++ A
Sbjct: 66 RGKEHREA 73
Score = 30.5 bits (69), Expect = 0.16
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 170 IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIM 222
I+ + + SA G L H ILEVNG + G + +E I+ +A + +
Sbjct: 36 IVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYI 89
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 46.2 bits (108), Expect = 4e-06
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 29 IGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN 88
G + A +G+ V V A GL GD+I+ ++ ++ ++ P +
Sbjct: 487 FGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYI--PGD 544
Query: 89 NISIVV--RDRPFERNVTLHK 107
++I RD +T +
Sbjct: 545 TVTIHAFRRDELMTLELTWQE 565
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 45.1 bits (106), Expect = 4e-06
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 38 EGVFVCLVQEGSPAALVGLR-FGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
EG V VQE SP GL F D I+ +NG + N + LL+ + +++
Sbjct: 16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDN-DTLKDLLKANVEKPVKMLIYS 74
Query: 97 RPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEV 145
+ G Q G IR A+ N H+LEV
Sbjct: 75 SKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVW----HVLEV 119
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 43.6 bits (103), Expect = 4e-06
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP 98
+ + V G PA L+ D+++ VNG + LR +IVV+
Sbjct: 47 SIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRPR 104
Query: 99 FERNVTLHKDSAG 111
+ L S+G
Sbjct: 105 KVQVAPLSGPSSG 117
Score = 32.8 bits (75), Expect = 0.026
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ------------IIRLVKESSASRNGLLTDHHILEVNG 147
+ VTL KDS G G+ +I V + L + ++ VNG
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNG 74
Query: 148 QNVVGLKNDSAGHVGFQFKR-GQIIRLV 174
+ + + A ++ G+I +V
Sbjct: 75 TPMEDVLHSFAVQQ---LRKSGKIAAIV 99
Score = 30.9 bits (70), Expect = 0.11
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
G V G +++ G + +I V + L + ++ VNG + +
Sbjct: 29 GIAVSGGRDNPHFENG---ETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFA 85
Query: 207 REIVEKAPCVINLTI 221
+ + K+ + + +
Sbjct: 86 VQQLRKSGKIAAIVV 100
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 43.1 bits (102), Expect = 4e-06
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 25 IHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLR 83
I G +G + ++V + EG A G L+ GD++L VN ++ + L+
Sbjct: 20 IAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK 79
Query: 84 NCPVNNISIVVR 95
N + + + V
Sbjct: 80 NTS-DFVYLKVA 90
Score = 31.2 bits (71), Expect = 0.080
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ------------IIRLVKESSASRNGLLTDH-HILEVNG 147
+ L K G +GF G + ++++ +A ++G L +L VN
Sbjct: 5 MEIKLIKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
Query: 148 QNVVGLKNDSA 158
++ + ++ A
Sbjct: 64 VSLEEVTHEEA 74
Score = 28.9 bits (65), Expect = 0.48
Identities = 8/53 (15%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 170 IIRLVKESSASRNGLLTDH-HILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
+ ++++ +A ++G L +L VN ++ + +E ++ + L +
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 45.7 bits (109), Expect = 5e-06
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 36 IHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN 74
+ GV + V GSPA GLR GD IL + + V +
Sbjct: 254 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE 292
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 43.5 bits (103), Expect = 5e-06
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 21 LCKDIHGKIGLRVA------AIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGS 73
+ KD +G+ VA ++V V+ G + G ++ GD +L V+G +
Sbjct: 30 IQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEV 89
Query: 74 NMHQVHALLRNCPVNNISIVVRDRP 98
+ + ALL+ ++I + +
Sbjct: 90 SRSEAVALLKRTS-SSIVLKALEVK 113
Score = 32.0 bits (73), Expect = 0.045
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ----------IIRLVKESSASRNGLL-TDHHILEVNGQ 148
E+ V + KD +G G +I + SR+G + T +L V+G
Sbjct: 25 EKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV 84
Query: 149 NVVGLKNDSA 158
+ + A
Sbjct: 85 ELTEVSRSEA 94
Score = 28.1 bits (63), Expect = 1.2
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 128 ESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQ----------IIRLVKES 177
+S L T++ + + VV ++ D +G G +I +
Sbjct: 5 HHHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGG 64
Query: 178 SASRNGLL-TDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTI 221
SR+G + T +L V+G + + E ++++ I L
Sbjct: 65 VISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKA 109
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 43.2 bits (102), Expect = 6e-06
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 38 EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNIS----I 92
V++ V G G L+ GDQ++ +N +++ G + + +++ + + S
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIA 100
Query: 93 VVRDRP 98
+R P
Sbjct: 101 FIRSGP 106
Score = 28.9 bits (65), Expect = 0.53
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 95 RDRPFERNVTLHKDSAGHVGFQFKRGQ---------IIRLVKESSASRNG-LLTDHHILE 144
DR V G +G + G I ++ ++G L ++
Sbjct: 10 LDRDPAFRVITVTKETG-LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 145 VNGQNVVGLKNDSA 158
+N ++++G+ + A
Sbjct: 69 INKESMIGVSFEEA 82
Score = 25.9 bits (57), Expect = 6.1
Identities = 5/33 (15%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGL 201
I ++ ++G L ++ +N ++++G+
Sbjct: 45 IHEVIPGGDCYKDGRLKPGDQLVSINKESMIGV 77
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 43.3 bits (102), Expect = 6e-06
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 37 HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC------PVNN 89
G+F+ + G A G LR DQ++ VNG+T+ G + H+ LR
Sbjct: 54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGM 113
Query: 90 ISIVVRDRP 98
I +V+ R
Sbjct: 114 IQLVILRRS 122
Score = 32.9 bits (75), Expect = 0.029
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 98 PFERNVTLHKDSAGHVGFQFKRGQ-----------IIRLVKESSASRNG-LLTDHHILEV 145
+ L+ + +G K + I ++ +A ++G L + ++ V
Sbjct: 24 QLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83
Query: 146 NGQNVVGLKNDSAGHV------GFQFKRGQIIRLVKESSASRNG 183
NG+ ++G N A RG I ++ S +G
Sbjct: 84 NGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSSG 127
Score = 26.7 bits (59), Expect = 4.3
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGL 201
I ++ +A ++G L + ++ VNG+ ++G
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGK 91
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 45.2 bits (108), Expect = 7e-06
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN--MHQVHALLRNCPVNNISI-VV 94
+G+ V V PAA G++ D I+ V+ K + M QV A +R P + I + V+
Sbjct: 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQV-AEIR--PGSVIPVVVM 300
Query: 95 RD-RPFERNVTL 105
RD + VT+
Sbjct: 301 RDDKQLTLQVTI 312
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 42.8 bits (101), Expect = 7e-06
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 21 LCKDIHGKIGLRVAA-----IHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSN 74
L + + +G+ + G+++ + +G A G + GD +LQVN +
Sbjct: 11 LNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS 70
Query: 75 MHQVHALLRNCPVNNISI---VVRDRPFERN 102
+LR+ I V + N
Sbjct: 71 NDDAVRVLRDIVHKPGPIVLTVAKSGGGSGN 101
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 103 VTLHKDSAGHVGFQFKRGQ---------IIRLVKESSASRNG-LLTDHHILEVNGQNVVG 152
VTL+ + +G I ++K + + +G + +L+VN N
Sbjct: 9 VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 153 LKNDSA 158
+ ND A
Sbjct: 69 MSNDDA 74
Score = 25.8 bits (57), Expect = 5.7
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 170 IIRLVKESSASRNG-LLTDHHILEVNGQNVVGL 201
I ++K + + +G + +L+VN N +
Sbjct: 37 IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENM 69
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 44.2 bits (103), Expect = 8e-06
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 37 HEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRD 96
+G+FV VQ PA+ + L+ GD+I+Q NG + Q +LL+ I+VR+
Sbjct: 23 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 81
Query: 97 RPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLT 138
+ G L ++ + L++
Sbjct: 82 VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLIS 123
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 42.0 bits (99), Expect = 9e-06
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVH 79
+ K +G+ + + + G A G L GD I +VNG+ V GS+ +
Sbjct: 12 IRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQ 70
Query: 80 ALLRNCPVNNISIVVRDRP 98
LLRN ++ + + P
Sbjct: 71 ELLRNAS-GSVILKILSGP 88
Score = 34.3 bits (79), Expect = 0.005
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 150 VVGLKNDSAGHVGFQFKRGQ----IIRLVKESSASRNGLL-TDHHILEVNGQNVVGLKDK 204
+VG++ + H+G F+ I R++ ++ GLL I EVNGQ VG +
Sbjct: 9 MVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-VGSDPR 67
Query: 205 EIREIVEKAPCVINLTIMPSY 225
++E++ A + L I+
Sbjct: 68 ALQELLRNASGSVILKILSGP 88
Score = 33.2 bits (76), Expect = 0.012
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 101 RNVTLHKDSAGHVGFQFKRGQ----IIRLVKESSASRNGLL-TDHHILEVNGQNV 150
R V + K + H+G F+ I R++ ++ GLL I EVNGQ V
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 41.9 bits (99), Expect = 1e-05
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 33 VAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NIS 91
V ++GV+V V++ PAA L GD I +++G + + + + V +
Sbjct: 2 VKVTYDGVYVMSVKDDVPAA-DVLHAGDLITEIDGNAF--KSSQEFIDYIHSKKVGDTVK 58
Query: 92 I-VVRD-RPFERNVTL 105
I + + ++ L
Sbjct: 59 INYKHGDKNEQADIKL 74
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 42.6 bits (101), Expect = 1e-05
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISI-VVR 95
GV V VQ PA L D I +V+ K + ++ + + L N + I I R
Sbjct: 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEI--ASSTDLQSALYNHSIGDTIKITYYR 113
Query: 96 D-RPFERNVTL 105
+ + ++ L
Sbjct: 114 NGKEETTSIKL 124
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 41.6 bits (98), Expect = 2e-05
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR 95
+ + V +G PA L+ D++ VNG ++ LR N I +R
Sbjct: 39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSG-KNAKITIR 94
Score = 32.0 bits (73), Expect = 0.045
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 100 ERNVTLHKDSAGHVGFQFKRGQ------------IIRLVKESSASRNGLLTDHHILEVNG 147
+ VTLH+ G G+ +I V + + L + + VNG
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNG 67
Query: 148 QNVVGLKNDSA 158
++ +++ A
Sbjct: 68 VSMDNVEHAFA 78
Score = 30.8 bits (70), Expect = 0.11
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 147 GQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEI 206
G + G +++ G + +I V + + L + + VNG ++ ++
Sbjct: 22 GIAISGGRDNPHFQSG---ETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFA 78
Query: 207 REIVEKAPCVINLTI 221
+ + K+ +TI
Sbjct: 79 VQQLRKSGKNAKITI 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 87/193 (45%)
Query: 90 ISI--VVRDRPFERNVTLHKDSAGHVGFQFKRGQIIR-----LVKESSASR--------- 133
SI +V + P +T+H F ++G+ IR ++ E+
Sbjct: 1659 FSILDIVINNPVN--LTIH--------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 134 --------------NGLL--TDH-------------HILEVNGQNVVGLKNDS--AGH-V 161
GLL T L+ G + D+ AGH +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG----LIPADATFAGHSL 1764
Query: 162 G-------------FQ------FKRGQIIR-LVKESSASRNGLLTDHHILEVN-GQNVVG 200
G + F RG ++ V R +++ ++ +N G+
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR----SNYGMIAINPGRVAAS 1820
Query: 201 LKDKEIREIVEKA 213
+ ++ +VE+
Sbjct: 1821 FSQEALQYVVERV 1833
Score = 35.0 bits (80), Expect = 0.019
Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 56/199 (28%)
Query: 23 KDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ----- 77
K + I L A + V G P +L GL + L+ K A S + Q
Sbjct: 364 KQVE--ISLVNGAKN---LVV---SGPPQSLYGL---NLTLR---KAKAPSGLDQSRIPF 409
Query: 78 -------VHALLR-NCPVNN------ISIVVRDRPFERNVTLH-KDSAGHVGFQFKRGQI 122
+ L P ++ ++ +D + NV+ + KD V + G
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV-KNNVSFNAKDIQIPV-YDTFDGSD 467
Query: 123 IRLVKESSASRNGLLTDHHILE--VNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSAS 180
+R++ S + R + D I+ V + A H+ F G AS
Sbjct: 468 LRVLSGSISER---IVD-CIIRLPVKWETTT---QFKATHI-LDFGPG---------GAS 510
Query: 181 RNGLLTDHHILEVNGQNVV 199
G+LT H + G V+
Sbjct: 511 GLGVLT-HRNKDGTGVRVI 528
Score = 28.5 bits (63), Expect = 2.6
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 125 LVKESSASRNGLLT--DHHILEVNG---QNVVGLKNDSAGHVGFQFKRGQIIR 172
L K S A+++ + D+H + G ++V + N + F ++G+ IR
Sbjct: 1635 LYKTSKAAQD-VWNRADNHFKDTYGFSILDIV-INNPVNLTIHFGGEKGKRIR 1685
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 40.7 bits (96), Expect = 3e-05
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 39 GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISI-VVRD 96
G++ V E PA + GD+I+ +GK + ++ + + +++ + R+
Sbjct: 2 GIYASSVVENMPAK-GKIEVGDKIISADGKNY--QSAEKLIDYISSKKAGDKVTLKIERE 58
Query: 97 -RPFERNVTL--HKDSAGHVG 114
+ +TL D G
Sbjct: 59 EKEKRVTLTLKQFPDEPDRAG 79
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 42.6 bits (101), Expect = 4e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSN 74
G FV V GS +A G++ GD I +NGK +
Sbjct: 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFA 299
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 42.2 bits (100), Expect = 6e-05
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 47 EGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR-----DRPFER 101
G PA G R GD I+ V+G V G +++ V LL+ + + +V+
Sbjct: 108 PGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTL 167
Query: 102 NVT 104
+T
Sbjct: 168 QLT 170
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 40.2 bits (94), Expect = 8e-05
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVN-NISIVVRD 96
+GV + V GSPA+ V L G I +NG SN+ A L+ V I+I
Sbjct: 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPT--SNLTTYSAALKTISVGEVINITTDQ 81
Query: 97 RPFERNVTLHKDSAG 111
F + +++
Sbjct: 82 GTFHLKTGRNPNNSS 96
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 39.1 bits (91), Expect = 2e-04
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVV-R 95
G V ++ +GL+ GD + +NG + ++ + ++ L ++ + +S+ V R
Sbjct: 37 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMSLTVER 94
Query: 96 D-RPFERNVTL 105
D + + +
Sbjct: 95 DGQQHDVYIQF 105
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 40.3 bits (95), Expect = 3e-04
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 38 EGVFVCLVQEGSPAALVGLR-----------FGDQILQVNGKTVAGSNMHQVHALLRNCP 86
GV V PA GL+ GD I VNG V SN ++ +L C
Sbjct: 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV--SNGSDLYRILDQCK 308
Query: 87 V-NNISI-VVRD-RPFERNVTL 105
V + +++ V+R + +VTL
Sbjct: 309 VGDEVTVEVLRGDHKEKISVTL 330
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 36.0 bits (83), Expect = 0.001
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 38 EGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNC-PVNNISIVV-R 95
G V ++ +GL+ GD + +NG + ++ + ++ L ++ + +S+ V R
Sbjct: 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMSLTVER 76
Query: 96 D-RPFERNVTL 105
D + + +
Sbjct: 77 DGQQHDVYIQF 87
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 35.9 bits (82), Expect = 0.002
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 14 HQMTKLFLCKDIHGKIGLRVAAIHEG--------VFVCLVQEGSPAALVGLRFGDQILQV 65
+ +T + + + G V V SP + GD+IL++
Sbjct: 14 YSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEI 73
Query: 66 NGKTVAGSNMHQVHALLRN 84
NG V + +V ++
Sbjct: 74 NGTPVRTLRVEEVEDAIKQ 92
Score = 33.2 bits (75), Expect = 0.018
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 146 NGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKE 205
+ + +SA + + + + S +RN + ILE+NG V L+ +E
Sbjct: 26 ECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEE 85
Query: 206 IREIVEKAPCVINLTI 221
+ + +++ + L I
Sbjct: 86 VEDAIKQTSQTLQLLI 101
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 36.7 bits (84), Expect = 0.005
Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 60/227 (26%)
Query: 26 HGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRF-GDQILQVNGKTVAGSNMHQVHALLRN 84
VA + G E SP G+ G I ++G+TV ++ +L
Sbjct: 745 LDGDHYVVAKAYAG-DYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGA--GSNIYRVLSE 801
Query: 85 CPVNNISIVVRDRPFE-----------------------RNVTLHKDSAGHVGF------ 115
+ I + + + +H+ S G +G+
Sbjct: 802 KAGTSARIRLSGKGGDKRDLMIDILDDDRFIRYRSWVEANRRYVHERSKGTIGYIHIPDM 861
Query: 116 ------QFKRGQIIRLVKESSAS------RN---GLLTDHHILEVNGQNVVGLKNDSAGH 160
+F R + ESS R G ++ I+E +G N G
Sbjct: 862 GMMGLNEFYRL----FINESSYQGLIVDVRFNGGGFVSQ-LIIEKLMNKRIGYDNPRRGT 916
Query: 161 VG---FQFKRGQIIRLVKESSASR----NGLLTDHHILEVNGQNVVG 200
+ RG+II + E + S + + ++ G G
Sbjct: 917 LSPYPTNSVRGKIIAITNEYAGSDGDIFSFSFKKLGLGKLIGTRTWG 963
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.69
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 19/76 (25%)
Query: 173 LVKESSASRN---GLLTDHHI-LEVNGQNVVGLKDKEI-REIVE-----KAPCVINLTIM 222
L K S + ++ I LE+ + + + R IV+ K +L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 223 P--SYVY----HHMMN 232
Y Y HH+ N
Sbjct: 468 YLDQYFYSHIGHHLKN 483
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312,
structural genomics, JOI for structural genomics, JCSG;
HET: PE4; 2.20A {Ruminococcus gnavus}
Length = 104
Score = 27.6 bits (61), Expect = 1.6
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 185 LTDHHILEVNGQNVVGLKDKEIREIVEKAPC 215
L +E+ N + +++ + + +E A C
Sbjct: 34 LAKDQTIEIQDGNRLRIQNGQAK--MEWADC 62
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 2.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 197 NVVGLKDKEIREIVEKAPCVINLT 220
N++GL E+ E+ +K+P + +L
Sbjct: 705 NLLGLLTPEVVELCQKSPVMADLN 728
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 27.6 bits (61), Expect = 4.9
Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 36/148 (24%)
Query: 57 RFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQ 116
+Q+ +NG S + + P + I ++ +H D F
Sbjct: 63 NVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGI--------LDKTRKIHIDYICDFIFD 114
Query: 117 FKRGQIIRLVKESSASRNGLLTDHHI---LEVNGQN----------------VVGLKNDS 157
+R + I L+ + + RN I E G + + LK
Sbjct: 115 DERLENIYLIDKKNLMRN----KVQIIQQFEQAGSHANRYDVTILVNGLPLVQIELKKRG 170
Query: 158 AG-HVGFQFKRGQIIRLVKESSASRNGL 184
F QI R KES S N L
Sbjct: 171 VAIREAFN----QIHRYSKESFNSENSL 194
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 27.1 bits (59), Expect = 6.1
Identities = 5/67 (7%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 165 FKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPS 224
+ +++ + + G + + + + + I E ++ + TI+ +
Sbjct: 31 RELMGTFDFLRDITYPK-GSVKLLGLAGNTDKENLLSQLPSISEGFQEEGVFSSWTIIDT 89
Query: 225 YVYHHMM 231
+ +
Sbjct: 90 AEFEENL 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.403
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,534,820
Number of extensions: 205900
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1051
Number of HSP's successfully gapped: 507
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)