BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2264
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSD--KDG-KFRVWGREDVVK 57
MP+ SV +A + D F + M TYLV F + +F S+S K G K V+ D +
Sbjct: 174 MPLVKSVTVAEG-LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI- 231
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
Q Y D +L DY Y LPK DL A+PDF +GAMENWG+ TYR
Sbjct: 232 NQADYALDAAVTLLEFYEDYFSIPY--PLPKQDLAAIPDFQSGAMENWGLTTYR 283
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSD--KDG-KFRVWGREDVVK 57
MP+ SV +A + D F + M TYLV F + +F S+S K G K V+ D +
Sbjct: 225 MPLVKSVTVAEG-LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI- 282
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
Q Y D +L DY Y LPK DL A+PDF +GAMENWG+ TYR
Sbjct: 283 NQADYALDAAVTLLEFYEDYFSIPY--PLPKQDLAAIPDFQSGAMENWGLTTYR 334
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSD--KDG-KFRVWGREDVVK 57
MP+ SV +A + D F + M TYLV F + +F S+S K G K V+ D +
Sbjct: 183 MPLVKSVTVAEG-LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI- 240
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
Q Y D +L DY Y LPK DL A+PDF +GAMENWG+ TYR
Sbjct: 241 NQADYALDAAVTLLEFYEDYFSIPY--PLPKQDLAAIPDFQSGAMENWGLTTYR 292
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSD--KDGKF-RVWGREDVV-KTQGQYIFDKGPKILAAL 74
F+ +P M TYL+ + V EF S+++ ++G R+W R + + + G Y + IL
Sbjct: 202 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 261
Query: 75 SDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+++ Y LPK D +A+PDF+AGAMENWG+ TYR
Sbjct: 262 ANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTYR 296
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSD--KDGKF-RVWGREDVV-KTQGQYIFDKGPKILAAL 74
F+ +P M TYL+ + V EF S+++ ++G R+W R + + + G Y + IL
Sbjct: 202 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 261
Query: 75 SDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+++ Y LPK D +A+PDF+AGAMENWG+ TYR
Sbjct: 262 ANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTYR 296
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSD--KDGKF-RVWGREDVV-KTQGQYIFDKGPKILAAL 74
F+ +P M TYL+ + V EF S+++ ++G R+W R + + + G Y + IL
Sbjct: 203 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 262
Query: 75 SDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+++ Y LPK D +A+PDF+AGAMENWG+ TYR
Sbjct: 263 ANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTYR 297
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSD--KDGKF-RVWGREDVV-KTQGQYIFDKGPKILAAL 74
F+ +P M TYL+ + V EF S+++ ++G R+W R + + + G Y + IL
Sbjct: 246 FETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFF 305
Query: 75 SDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+++ Y LPK D +A+PDF+AGAMENWG+ TYR
Sbjct: 306 ANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTYR 340
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLS---DKDGKFRVWGREDVVK 57
MP ++E+ + D F+ + M TYLV + V +F+SLS K ++ D +
Sbjct: 236 MPKVKTIELEGG-LLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDK-R 293
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
Q Y K+L Y FD Y L K+DL+A+PDF GAMENWG+ TYR
Sbjct: 294 NQTHYALQASLKLLDFYEKY--FDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLS---DKDGKFRVWGREDVVK 57
MP ++E+ + D F+ + M TYLV + V +F+SLS K ++ D +
Sbjct: 236 MPKVKTIELEGG-LLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDK-R 293
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
Q Y K+L Y FD Y L K+DL+A+PDF GAMENWG+ TYR
Sbjct: 294 NQTHYALQASLKLLDFYEKY--FDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSDKDGK---FRVWGREDVVKT-QGQYIFDKGPKILAAL 74
F +P M TYL+ F V EF+ + + R+W R + G Y + IL
Sbjct: 205 FHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFF 264
Query: 75 SDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+ + +D LPK D + +PDF+AGAMENWG+ TYR
Sbjct: 265 AGH--YDTPYPLPKSDQIGLPDFNAGAMENWGLVTYR 299
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 8 EIANSDKVTDTFQQSPPMPTYL--VGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYIFD 65
I S++ FQ +P M TYL VG F + +D + +D+ + +Y D
Sbjct: 141 RIEVSERKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDI---RSKYPLD 197
Query: 66 KGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
K + +Y G Y LPKM L++VP+F AGAMENWG T+R
Sbjct: 198 MARKSVEFYENYFGIPY--ALPKMHLISVPEFGAGAMENWGAITFR 241
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 8 EIANSDKVTDTFQQSPPMPTYL--VGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYIFD 65
I S++ FQ +P M TYL VG F + +D + +D+ + +Y D
Sbjct: 141 RIEVSERKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDI---RSKYPLD 197
Query: 66 KGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
K + +Y G Y LPKM L++VP+F AGAMENWG T+R
Sbjct: 198 MARKSVEFYENYFGIPY--ALPKMHLISVPEFGAGAMENWGAITFR 241
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 7 VEIANSDKVTD----------TFQQSPPMPTYLVGFAVFEFNSLS--------DKDGKFR 48
V ++N DKV + F P P YL + LS K +
Sbjct: 158 VLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELY 217
Query: 49 VWGREDVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMN 108
V+ E V ++ Q+ + K +A DY G +Y L +++LVAV DF+ GAMEN G+N
Sbjct: 218 VFSEEKYV-SKLQWALECLKKSMAFDEDYFGLEY--DLSRLNLVAVSDFNVGAMENKGLN 274
Query: 109 TY 110
+
Sbjct: 275 IF 276
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 7 VEIANSDKVTD----------TFQQSPPMPTYLVGFAVFEFNSLS--------DKDGKFR 48
V ++N DKV + F P P YL + LS K +
Sbjct: 157 VLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELY 216
Query: 49 VWGREDVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMN 108
V+ E V ++ Q+ + K +A DY G +Y L +++LVAV DF+ GAMEN G+N
Sbjct: 217 VFSEEKYV-SKLQWALECLKKSMAFDEDYFGLEY--DLSRLNLVAVSDFNVGAMENKGLN 273
Query: 109 TY 110
+
Sbjct: 274 IF 275
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 7 VEIANSDKVTD----------TFQQSPPMPTYLVGFAVFEFNSLS--------DKDGKFR 48
V ++N DKV + F P P YL + LS K +
Sbjct: 158 VLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELY 217
Query: 49 VWGREDVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMN 108
V+ E V ++ Q+ + K +A DY G +Y L +++LVAV DF+ GAMEN G+N
Sbjct: 218 VFSEEKYV-SKLQWALECLKKSMAFDEDYFGLEY--DLSRLNLVAVSDFNVGAMENKGLN 274
Query: 109 TY 110
+
Sbjct: 275 IF 276
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 7 VEIANSDKVTD----------TFQQSPPMPTYLVGFAVFEFNSLS--------DKDGKFR 48
V ++N DKV + F P P YL + LS K +
Sbjct: 157 VLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELY 216
Query: 49 VWGREDVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMN 108
V+ E V ++ Q+ + K +A DY G +Y L +++LVAV DF+ GAMEN G+N
Sbjct: 217 VFSEEKYV-SKLQWALECLKKSMAFDEDYFGLEY--DLSRLNLVAVSDFNVGAMENKGLN 273
Query: 109 TY 110
+
Sbjct: 274 IF 275
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYI----FDKGPKILAAL 74
+Q P P YL +F+ L D GRE ++ Y+ D+ P + +L
Sbjct: 197 WQDPFPKPCYLFALVAGDFDVLRDTFTTRS--GREVALEL---YVDRGNLDRAPWAMTSL 251
Query: 75 SDYMGFDYYKMLPKMDL-----VAVPDFDAGAMENWGMNTYRLGLVVEAT 119
+ M +D + + DL VAV F+ GAMEN G+N + V+ T
Sbjct: 252 KNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLART 301
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYI----FDKGPKILAAL 74
+Q P P YL +F+ L D GRE ++ Y+ D+ P + +L
Sbjct: 197 WQDPFPKPCYLFALVAGDFDVLRDTFTTRS--GREVALEL---YVDRGNLDRAPWAMTSL 251
Query: 75 SDYMGFDYYKMLPKMDL-----VAVPDFDAGAMENWGMNTYRLGLVVEAT 119
+ M +D + + DL VAV F+ GAMEN G+N + V+ T
Sbjct: 252 KNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLART 301
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 19 FQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYI----FDKGPKILAAL 74
+Q P P YL +F+ L D GRE ++ Y+ D+ P + +L
Sbjct: 176 WQDPFPKPCYLFALVAGDFDVLRDTFTTRS--GREVALEL---YVDRGNLDRAPWAMTSL 230
Query: 75 SDYMGFDYYKMLPKMDL-----VAVPDFDAGAMENWGMNTYRLGLVVEAT 119
+ M +D + + DL VAV F+ GAMEN G+N + V+ T
Sbjct: 231 KNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLART 280
>pdb|3I4O|A Chain A, Crystal Structure Of Translation Initiation Factor 1
From Mycobacterium Tuberculosis
pdb|3I4O|B Chain B, Crystal Structure Of Translation Initiation Factor 1
From Mycobacterium Tuberculosis
Length = 79
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 39 SLSDKDGKFRVWGR--EDVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAV 94
+++ KDG V GR E + + + G K+LA +S M Y ++LP+ D V V
Sbjct: 6 TMAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPE-DRVVV 62
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 91 LVAVPDFDAGAMENWGMNTYRLGLVV 116
+VAV DF+ GA EN G+N + V+
Sbjct: 248 VVAVGDFNXGAXENKGLNIFNTKFVL 273
>pdb|1HR0|W Chain W, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1ZO1|W Chain W, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 71
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 53 EDVVKTQG-----------QYIFDKGPKILAALSDYMGFDYYKMLP 87
+D ++T+G + D GP+ILA +S M Y ++LP
Sbjct: 4 KDTIRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILP 49
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 VSTSVEIANSDKVTD--TFQQSPPMPTYLVGFAVFEFNS 39
V + + I ++ K T+ F+Q P+P YL+G A + +S
Sbjct: 178 VFSGIRIEDTSKDTNIYRFEQKVPIPAYLIGIASGDLSS 216
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 VSTSVEIANSDKVTD--TFQQSPPMPTYLVGFAVFEFNS 39
V + + I ++ K T+ F+Q P+P YL+G A + +S
Sbjct: 178 VFSGIRIEDTSKDTNIYRFEQKVPIPAYLIGIASGDLSS 216
>pdb|4EQ7|A Chain A, Structure Of Atu4243-Gaba Receptor
pdb|4EQ7|B Chain B, Structure Of Atu4243-Gaba Receptor
Length = 320
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 54 DVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGA 101
DVV +G Y GPK L D+ D K+ P+ V D+ G+
Sbjct: 55 DVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRF----VTDYSVGS 98
>pdb|4EUO|A Chain A, Structure Of Atu4243-Gaba Sensor
Length = 320
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 54 DVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGA 101
DVV +G Y GPK L D+ D K+ P+ V D+ G+
Sbjct: 55 DVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRF----VTDYSVGS 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,784,371
Number of Sequences: 62578
Number of extensions: 192955
Number of successful extensions: 373
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 40
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)