RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2264
(148 letters)
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 140 bits (355), Expect = 8e-40
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSDKDG---KFRVWGREDVVK 57
MP ++E+ + D F+ + M TYLV + V +F+SLS K ++ D
Sbjct: 236 MPKVKTIELEG-GLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRN 294
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYRLGLVVE 117
Q Y K+L Y Y L K+DL+A+PDF GAMENWG+ TYR E
Sbjct: 295 -QTHYALQASLKLLDFYEKYFDIYYP--LSKLDLIAIPDFAPGAMENWGLITYR-----E 346
Query: 118 ATHLYLLQHTSMIRMTNI 135
+ L+ + +S +
Sbjct: 347 TSLLFDPKTSSASDKLWV 364
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 140 bits (355), Expect = 9e-40
Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSDKDG---KFRVWGREDVVK 57
MP+ SV +A + D F + M TYLV F + +F S+S K V+ D +
Sbjct: 174 MPLVKSVTVAE-GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKIN 232
Query: 58 TQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYRLGLVVE 117
Q Y D +L DY Y LPK DL A+PDF +GAMENWG+ TYR E
Sbjct: 233 -QADYALDAAVTLLEFYEDYFSIPYP--LPKQDLAAIPDFQSGAMENWGLTTYR-----E 284
Query: 118 ATHLYLLQHTSMIRMTNI 135
+ L+ + +S I
Sbjct: 285 SALLFDAEKSSASSKLGI 302
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 139 bits (352), Expect = 3e-39
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQG 60
MP I S++ FQ +P M TYL+ + +F +K + +
Sbjct: 137 MPP---KRIEVSERKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDI-RS 192
Query: 61 QYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+Y D K + +Y G Y LPKM L++VP+F AGAMENWG T+R
Sbjct: 193 KYPLDMARKSVEFYENYFGIPYA--LPKMHLISVPEFGAGAMENWGAITFR 241
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 108 bits (271), Expect = 2e-28
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 7 VEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYIFDK 66
+E + D F+Q P+P YL+G A + +S + V+ +K Q+ F+
Sbjct: 184 IEDTSKDTNIYRFEQKVPIPAYLIGIASGDLSSAPIGP-RSTVYTEPFRLK-DCQWEFEN 241
Query: 67 GPKILAALSDYMGFDYYKMLPKMD-LVAVPDFDAGAMENWGMNTYR 111
+ ++ + F+Y D LV V + G ME+ M
Sbjct: 242 DVEKFIQTAEKIIFEYE--WGTYDILVNVDSYPYGGMESPNMTFAT 285
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 103 bits (258), Expect = 1e-26
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQG 60
+ + + + + F Q P+P YL+ V S + VW ++ V+ +
Sbjct: 179 IRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQIGP-RTLVWSEKEQVE-KS 236
Query: 61 QYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVP-DFDAGAMENWGMNTYR 111
Y F + +L D G Y + + DL+ +P F G MEN +
Sbjct: 237 AYEFSETESMLKIAEDL-GGPY--VWGQYDLLVLPPSFPYGGMENPCLTFVT 285
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 101 bits (253), Expect = 4e-26
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQG 60
E F +P YL+ V + + + ++ ++
Sbjct: 182 ANNEPGTE----RDGDYFFSMPQAIPPYLIAIGVGDLEFKAMSH-QTGIYAESYILD-AA 235
Query: 61 QYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVP-DFDAGAMENWGMNTYR 111
FD ++ G Y + DL+ +P F G MEN ++
Sbjct: 236 VAEFDDTQAMIDKAEQMYG-KYR--WGRYDLLMLPPSFPFGGMENPRLSFIT 284
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 89.2 bits (221), Expect = 1e-21
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSD--------KDGKFRVWGR 52
EI + F P P YL + LS K + V+
Sbjct: 162 GDKVNEFEIPG-GRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSE 220
Query: 53 EDVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
E V + Q+ + K +A DY G +Y L +++LVAV DF+ GAMEN G+N +
Sbjct: 221 EKYVS-KLQWALECLKKSMAFDEDYFGLEY--DLSRLNLVAVSDFNVGAMENKGLNIFN 276
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 76.1 bits (187), Expect = 4e-17
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSD----KDGK---FRVWGRE 53
E+ N + +Q P P YL +F+ L D + G+ ++
Sbjct: 180 GNRVAQGELEN-GRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDR 238
Query: 54 DVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYR 111
+ + + + + G +Y L +VAV F+ GAMEN G+N +
Sbjct: 239 GNLD-RAPWAMTSLKNSMKWDEERFGLEY--DLDIYMIVAVDFFNMGAMENKGLNIFN 293
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 74.5 bits (183), Expect = 1e-16
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 11/122 (9%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPTYLVGFAVFEFNSLSD----KDGK---FRVWGRE 53
E ++ ++ P+YL + D G+ + E
Sbjct: 155 GNKIDGGEFSDGRHWV-KWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTE 213
Query: 54 DVVKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKMDLVAVPDFDAGAMENWGMNTYRLG 113
+ + + + G +Y L +VAV DF+ GAMEN G+N +
Sbjct: 214 ADKP-KVGFAVESLKNAMKWDETRFGLEY--DLDIFMVVAVGDFNMGAMENKGLNIFNTK 270
Query: 114 LV 115
V
Sbjct: 271 FV 272
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.056
Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 55/127 (43%)
Query: 13 DKVTDT-FQQSPPMPTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYIFDKGPKI- 70
++ T F Q P + L+ A FE +K++G +
Sbjct: 1724 GLLSATQFTQ-PAL--TLMEKAAFE------------------DLKSKG--LIPADATFA 1760
Query: 71 ---------LAALSDYMGFDYYKMLPKMDLV------------AVPDFDAGAMENWGMNT 109
LA+L+D M + LV AVP D N+GM
Sbjct: 1761 GHSLGEYAALASLADVMSIE--------SLVEVVFYRGMTMQVAVPR-DELGRSNYGMIA 1811
Query: 110 YRLGLVV 116
G V
Sbjct: 1812 INPGRVA 1818
Score = 26.6 bits (58), Expect = 4.0
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MPVSTSVEIANSDKVTDTFQQSPPMPT 27
+ V T+ S ++ + F + P PT
Sbjct: 20 LLVPTASFFIAS-QLQEQFNKILPEPT 45
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 28.9 bits (64), Expect = 0.58
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 26 PTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYIF-DKGPKILAALSDYMGFDYYK 84
P + + +E ++ +D + D Y GP I+ L Y DYY+
Sbjct: 70 PQLIGVYLGYEPDAFDGRDKNYINAPGHDSTGRFVPYCNKINGPVIIEPLVHYDSSDYYQ 129
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 28.5 bits (63), Expect = 0.89
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 26 PTYLVGFAVFEFNSLSDKDGKFRVWGREDVVKTQGQYIFDKGPKI-LAALSDYMGFDYYK 84
P L + FE ++ KD ++ D Y +A L Y DYY+
Sbjct: 69 PHLLGTYVAFEPDAFDGKDAEYTNSPAHDGTGRFVPYWNKMNGTASVAPLLHYDSSDYYQ 128
>3gnf_B MVP, major vault protein; beta sheets, phosphoprotein,
ribonucleoprotein, structural P; 2.10A {Mus musculus}
PDB: 3gf5_A 3gng_A 1y7x_A
Length = 387
Score = 28.1 bits (62), Expect = 1.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 42 DKDGKFRVWGREDVVKTQGQYI 63
D+DGK RV G E +V++ G Y+
Sbjct: 188 DRDGKERVTGEEWLVRSVGAYL 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.6
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 56 VKTQGQYIFDKGPKILAALSDYMGFDYYKMLPKM--DLVAVPDFDAGAMENWGMNTYRLG 113
+K YI D PK ++ + F LPK+ +L+ D R+
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDF-----LPKIEENLICSKYTD----------LLRIA 571
Query: 114 LVVEATHLYLLQHTSMIR 131
L+ E ++ H + R
Sbjct: 572 LMAEDEAIFEEAHKQVQR 589
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.438
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,389,701
Number of extensions: 133799
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 19
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)