BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2265
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 76 YIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
Y D +L DY + Y LPK DL A+PDF +GAMENWG+ TYR
Sbjct: 287 YALDAAVTLLEFYEDYFSIPY--PLPKQDLAAIPDFQSGAMENWGLTTYR 334
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 76 YIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
Y D +L DY + Y LPK DL A+PDF +GAMENWG+ TYR
Sbjct: 236 YALDAAVTLLEFYEDYFSIPY--PLPKQDLAAIPDFQSGAMENWGLTTYR 283
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 76 YIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
Y D +L DY + Y LPK DL A+PDF +GAMENWG+ TYR
Sbjct: 245 YALDAAVTLLEFYEDYFSIPY--PLPKQDLAAIPDFQSGAMENWGLTTYR 292
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 75 QYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
+Y D K + +Y G+ Y LPKM L++VP+F AGAMENWG T+R
Sbjct: 193 KYPLDMARKSVEFYENYFGIPY--ALPKMHLISVPEFGAGAMENWGAITFR 241
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 75 QYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
+Y D K + +Y G+ Y LPKM L++VP+F AGAMENWG T+R
Sbjct: 193 KYPLDMARKSVEFYENYFGIPY--ALPKMHLISVPEFGAGAMENWGAITFR 241
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 71 RRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
R Y K+L Y D Y L K+DL+A+PDF GAMENWG+ TYR
Sbjct: 293 RNQTHYALQASLKLLDFYEKY--FDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 71 RRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
R Y K+L Y D Y L K+DL+A+PDF GAMENWG+ TYR
Sbjct: 293 RNQTHYALQASLKLLDFYEKY--FDIYYPLSKLDLIAIPDFAPGAMENWGLITYR 345
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 65 RKRVACRRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTY 124
R G Y + IL +++ Y LPK D +A+PDF+AGAMENWG+ TY
Sbjct: 238 RPNAIAEGHGMYALNVTGPILNFFANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTY 295
Query: 125 R 125
R
Sbjct: 296 R 296
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 65 RKRVACRRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTY 124
R G Y + IL +++ Y LPK D +A+PDF+AGAMENWG+ TY
Sbjct: 238 RPNAIAEGHGMYALNVTGPILNFFANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTY 295
Query: 125 R 125
R
Sbjct: 296 R 296
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 65 RKRVACRRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTY 124
R G Y + IL +++ Y LPK D +A+PDF+AGAMENWG+ TY
Sbjct: 239 RPNAIAEGHGMYALNVTGPILNFFANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTY 296
Query: 125 R 125
R
Sbjct: 297 R 297
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 65 RKRVACRRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTY 124
R G Y + IL +++ Y LPK D +A+PDF+AGAMENWG+ TY
Sbjct: 282 RPNAIAEGHGMYALNVTGPILNFFANHYNTSY--PLPKSDQIALPDFNAGAMENWGLVTY 339
Query: 125 R 125
R
Sbjct: 340 R 340
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 100 LPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSN 138
LPK D + +PDF+AGAMENWG+ TYR ++ L +P S+
Sbjct: 274 LPKSDQIGLPDFNAGAMENWGLVTYR--ENSLLFDPLSS 310
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 75 QYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR---LLASTQ 131
Q+ + K +A DY GL+Y L +++LVAV DF+ GAMEN G+N + LLAS +
Sbjct: 228 QWALECLKKSMAFDEDYFGLEYD--LSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKK 285
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 75 QYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR---LLASTQ 131
Q+ + K +A DY GL+Y L +++LVAV DF+ GAMEN G+N + LLAS +
Sbjct: 229 QWALECLKKSMAFDEDYFGLEYD--LSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKK 286
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 75 QYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR---LLASTQ 131
Q+ + K +A DY GL+Y L +++LVAV DF+ GAMEN G+N + LLAS +
Sbjct: 229 QWALECLKKSMAFDEDYFGLEYD--LSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKK 286
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 75 QYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR---LLASTQ 131
Q+ + K +A DY GL+Y L +++LVAV DF+ GAMEN G+N + LLAS +
Sbjct: 228 QWALECLKKSMAFDEDYFGLEYD--LSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKK 285
>pdb|1PA6|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PH2|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg
pdb|1PH3|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggtg
pdb|1PH4|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggcg
pdb|1PH5|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg(3dr)gg
pdb|1PH7|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgigg
pdb|1PH8|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgcgg
pdb|1PH9|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PHJ|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna Gg(3dr)
Gttttgggg
Length = 216
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 95 DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
+++ P +++V + D + NW + R + S ++ Y+N + +I S + Q+
Sbjct: 62 EFHAKFPNVNIVDLTD-KVIVINNWSLEL-RRVNSAEVFTSYANLEARLIVHSFKPNLQE 119
Query: 155 RRNP 158
R NP
Sbjct: 120 RLNP 123
>pdb|1PH1|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttggggt
pdb|1PH6|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgtgg
Length = 217
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 95 DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
+++ P +++V + D + NW + R + S ++ Y+N + +I S + Q+
Sbjct: 63 EFHAKFPNVNIVDLTD-KVIVINNWSLEL-RRVNSAEVFTSYANLEARLIVHSFKPNLQE 120
Query: 155 RRNP 158
R NP
Sbjct: 121 RLNP 124
>pdb|1OTC|B Chain B, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1JB7|B Chain B, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
Length = 260
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 95 DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
+++ P +++V + D + NW + R + S ++ Y+N + +I S + Q+
Sbjct: 70 EFHAKFPNVNIVDLTD-KVIVINNWSL-ELRRVNSAEVFTSYANLEARLIVHSFKPNLQE 127
Query: 155 RRNP 158
R NP
Sbjct: 128 RLNP 131
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 78 FDKGPKILAALSDYMGLDYYTMLPKMDL-----VAVPDFDAGAMENWGMNTY 124
D+ P + +L + M D + DL VAV F+ GAMEN G+N +
Sbjct: 220 LDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIF 271
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 78 FDKGPKILAALSDYMGLDYYTMLPKMDL-----VAVPDFDAGAMENWGMNTY 124
D+ P + +L + M D + DL VAV F+ GAMEN G+N +
Sbjct: 241 LDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIF 292
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 78 FDKGPKILAALSDYMGLDYYTMLPKMDL-----VAVPDFDAGAMENWGMNTY 124
D+ P + +L + M D + DL VAV F+ GAMEN G+N +
Sbjct: 241 LDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIF 292
>pdb|3EQV|A Chain A, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae Containing Four Mutations
Associated With Penicillin Resistance
pdb|3EQV|B Chain B, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae Containing Four Mutations
Associated With Penicillin Resistance
Length = 542
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 128 ASTQLVEPYSNCQGFIIPKSKREGRQD---RRNPQPFLERTSSVQD 170
A T ++EP S + F+I K+ G+ D R N QP+ S V+D
Sbjct: 262 AVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYKIGPSPVRD 307
>pdb|2I0Q|B Chain B, Crystal Structure Of A Telomere Single-Strand Dna-Protein
Complex From O. Nova With Full-Length Alpha And Beta
Telomere Proteins
Length = 385
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 95 DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
+++ P +++V + D + NW + R + S ++ Y+N + +I S + Q+
Sbjct: 70 EFHAKFPNVNIVDLTD-KVIVINNWSLE-LRRVNSAEVFTSYANLEARLIVHSFKPNLQE 127
Query: 155 RRNP 158
R NP
Sbjct: 128 RLNP 131
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 141 GFIIPKSKREGRQDRRNPQPFLERTSSVQDKIKDLAL 177
G I K++G R P FLER S +KDL L
Sbjct: 47 GGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGL 83
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 93 GLDYYTMLPKMDLVAVPDFDAGAMENWGMNTY 124
GL+Y L +VAV DF+ GA EN G+N +
Sbjct: 238 GLEY--DLDIFXVVAVGDFNXGAXENKGLNIF 267
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 114 GAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQDRRNPQPFL 162
G M++W +++ A T + P S GF P + GR+ RN + L
Sbjct: 259 GGMDDWAYGQHKIFAFTFEMYPTSYNPGF-YPPDEVIGRETSRNKEAVL 306
>pdb|1XOV|A Chain A, The Crystal Structure Of The Listeria Monocytogenes
Bacteriophage Psa Endolysin Plypsa
Length = 326
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 109 PDFDAGAMENWGM---NTYRLLASTQLVEPYSNCQGFIIPKS---KREGRQDRRNPQPFL 162
P F+ GAM N+ M ++ + + + ++ + + S KREG N + F+
Sbjct: 6 PQFEKGAMSNYSMSRGHSDKCVGAEDILSEIKEAEKVLNAASDELKREG----HNVKTFI 61
Query: 163 ERTSSVQ 169
+RTS+ Q
Sbjct: 62 DRTSTTQ 68
>pdb|3EQU|A Chain A, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae
pdb|3EQU|B Chain B, Crystal Structure Of Penicillin-Binding Protein 2 From
Neisseria Gonorrhoeae
Length = 542
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 125 RLLASTQLVEPYSNCQGFIIPKSKREGRQD---RRNPQPFLERTSSVQD 170
R A T +EP S + F+I K+ G+ D R N QP+ S V+D
Sbjct: 259 RNRAVTDXIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYKIGPSPVRD 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,379,907
Number of Sequences: 62578
Number of extensions: 203180
Number of successful extensions: 450
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 36
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)