Query psy2265
Match_columns 196
No_of_seqs 265 out of 1483
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:18:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02414 pepN_proteo aminopep 100.0 1.1E-37 2.3E-42 307.5 7.8 162 19-184 147-346 (863)
2 COG0308 PepN Aminopeptidase N 100.0 2.9E-36 6.3E-41 297.2 6.2 163 17-184 171-371 (859)
3 PRK14015 pepN aminopeptidase N 100.0 7.8E-36 1.7E-40 294.7 7.5 163 18-184 159-359 (875)
4 KOG1046|consensus 100.0 2.1E-34 4.6E-39 284.7 8.2 142 17-163 190-365 (882)
5 TIGR02412 pepN_strep_liv amino 100.0 1.1E-28 2.4E-33 242.7 8.2 144 10-157 131-323 (831)
6 PF01433 Peptidase_M1: Peptida 99.9 5.5E-28 1.2E-32 214.7 3.4 144 16-163 160-337 (390)
7 TIGR02411 leuko_A4_hydro leuko 99.9 1.1E-22 2.3E-27 194.7 6.3 138 10-157 137-315 (601)
8 KOG1047|consensus 99.4 2.4E-13 5.2E-18 128.6 5.8 128 30-166 183-333 (613)
9 KOG1932|consensus 96.7 0.0043 9.4E-08 63.7 6.9 108 18-128 212-328 (1180)
10 COG3975 Predicted protease wit 39.9 1.2E+02 0.0025 30.0 7.3 58 59-119 165-226 (558)
11 KOG0672|consensus 30.0 44 0.00095 28.9 2.4 44 81-126 157-201 (218)
12 KOG3724|consensus 23.3 93 0.002 32.4 3.7 65 72-140 154-224 (973)
No 1
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.1e-37 Score=307.50 Aligned_cols=162 Identities=26% Similarity=0.256 Sum_probs=146.5
Q ss_pred cCCCCCcccC----CCceeEEEecCCCCCchhhheeeecCceEE-----ecCCceEEEEEec----cchHHHHHHHHHHH
Q psy2265 19 SLSKAGKQQS----TGHETAPFWDCSDIRCQQIACCWVPAAPLR-----LGEVELRKRVACR----RMGQYIFDKGPKIL 85 (196)
Q Consensus 19 aLSN~~~~~~----~g~~~~~f~~tppmstYLfA~v~G~~~~~~-----~s~~~v~lrV~sr----~~~~~Al~~~~k~l 85 (196)
+||||++.+. .|+++++|++|+|||||||||++|+++..+ .+++++++++|++ +++++|++.++++|
T Consensus 147 ~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L 226 (863)
T TIGR02414 147 LLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAM 226 (863)
T ss_pred EEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHH
Confidence 4899986433 378999999999999999999999998765 3567899999999 57899999999999
Q ss_pred HHHHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcccccccCCCcCCCc-------ee---------------
Q psy2265 86 AALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQG-------FI--------------- 143 (196)
Q Consensus 86 ~~~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~l~~L~dp~t~td~-------~~--------------- 143 (196)
+|+|++||+|| |++|||+|+||+|++|||||||||+|+|+++ |++|+++++. +|
T Consensus 227 ~~~E~~fG~pY--Pl~k~diVavpdf~~GaMEN~GLi~f~e~~l--L~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~ 302 (863)
T TIGR02414 227 KWDEEVFGLEY--DLDIFMIVAVDDFNMGAMENKGLNIFNSKYV--LADPETATDADYERIESVIAHEYFHNWTGNRVTC 302 (863)
T ss_pred HHHHHHhCCCC--ChhhccEEecCCCCCccccccceeccccceE--EeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeee
Confidence 99999999999 9999999999999999999999999999999 9999988763 22
Q ss_pred ---EecCCccCcccccCCccccccCcchhhhhHHHHHHHhccCC
Q psy2265 144 ---IPKSKREGRQDRRNPQPFLERTSSVQDKIKDLALTRQARYQ 184 (196)
Q Consensus 144 ---~~~~~keg~~~~r~~~~~~~~~~~~~~~i~~~~~~r~~~~~ 184 (196)
+|+.||||+|+|+++++..++.+++++||.++..+|+.||.
T Consensus 303 ~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~ 346 (863)
T TIGR02414 303 RDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFP 346 (863)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhc
Confidence 49999999999999777777889999999999999999884
No 2
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=297.22 Aligned_cols=163 Identities=24% Similarity=0.305 Sum_probs=148.0
Q ss_pred CccCCCCCcccC----CCceeEEEecCCCCCchhhheeeecCceEEecC----CceEEEEEec----cchHHHHHHHHHH
Q psy2265 17 QPSLSKAGKQQS----TGHETAPFWDCSDIRCQQIACCWVPAAPLRLGE----VELRKRVACR----RMGQYIFDKGPKI 84 (196)
Q Consensus 17 ~~aLSN~~~~~~----~g~~~~~f~~tppmstYLfA~v~G~~~~~~~s~----~~v~lrV~sr----~~~~~Al~~~~k~ 84 (196)
..+||||+.... .|++..+|.+|+||||||||+++|+++..+... ++++++||++ +++.++++.++++
T Consensus 171 ~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~ 250 (859)
T COG0308 171 PKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRS 250 (859)
T ss_pred ceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHH
Confidence 447999998443 278999999999999999999999998776332 6899999999 6899999999999
Q ss_pred HHHHHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcccccccCCCcCCCc-------ee--------------
Q psy2265 85 LAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQG-------FI-------------- 143 (196)
Q Consensus 85 l~~~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~l~~L~dp~t~td~-------~~-------------- 143 (196)
+.|+|++||+|| ||+| |+|+||+|++|||||||+|+|++.++ |++|+++|+. +|
T Consensus 251 ~~~~e~~fg~~y--~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~l--l~~~~~at~~~~~~~~~viaHElaHqWfGnlVT 325 (859)
T COG0308 251 IEFYEEYFGLPY--ALPI-DIVAVPDFSAGAMENWGLVTFREKYL--LADPETATDSDYENVEEVIAHELAHQWFGNLVT 325 (859)
T ss_pred hhhHHHhcCCCC--CCcc-cEEeccCCCCccccccceeEEeeeEE--eeCcccchhHHHHHHHHHHHHHHhhhcccceee
Confidence 999999999999 9999 99999999999999999999999999 9999999997 33
Q ss_pred ----EecCCccCcccccCCccccccCcchhhhhHHHHHHHhc-cCC
Q psy2265 144 ----IPKSKREGRQDRRNPQPFLERTSSVQDKIKDLALTRQA-RYQ 184 (196)
Q Consensus 144 ----~~~~~keg~~~~r~~~~~~~~~~~~~~~i~~~~~~r~~-~~~ 184 (196)
+|++|+||+|||||+.+.+++.++.++||++++.+|+. +|+
T Consensus 326 ~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (859)
T COG0308 326 MKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALA 371 (859)
T ss_pred ccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHh
Confidence 49999999999999777777999999999999999997 654
No 3
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=7.8e-36 Score=294.69 Aligned_cols=163 Identities=24% Similarity=0.231 Sum_probs=146.8
Q ss_pred ccCCCCCcccC----CCceeEEEecCCCCCchhhheeeecCceEE-----ecCCceEEEEEec----cchHHHHHHHHHH
Q psy2265 18 PSLSKAGKQQS----TGHETAPFWDCSDIRCQQIACCWVPAAPLR-----LGEVELRKRVACR----RMGQYIFDKGPKI 84 (196)
Q Consensus 18 ~aLSN~~~~~~----~g~~~~~f~~tppmstYLfA~v~G~~~~~~-----~s~~~v~lrV~sr----~~~~~Al~~~~k~ 84 (196)
.+||||+..+. .|+++++|.+++|||||||||++|+++..+ .+++++++++|++ ++++++++.++++
T Consensus 159 ~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~ 238 (875)
T PRK14015 159 VLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKS 238 (875)
T ss_pred EEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 46899997444 378899999999999999999999998765 3567799999999 5788999999999
Q ss_pred HHHHHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcccccccCCCcCCCc-------ee--------------
Q psy2265 85 LAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQG-------FI-------------- 143 (196)
Q Consensus 85 l~~~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~l~~L~dp~t~td~-------~~-------------- 143 (196)
|+|+|++||+|| |++|||+|++|+|++||||||||++|++.++ |++|++.++. +|
T Consensus 239 L~~~E~~FG~pY--P~~k~diVavp~f~~GaMEN~Gl~~f~~~~l--L~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT 314 (875)
T PRK14015 239 MKWDEERFGLEY--DLDIFMIVAVDDFNMGAMENKGLNIFNSKYV--LADPETATDADYERIESVIAHEYFHNWTGNRVT 314 (875)
T ss_pred HHHHHHHhCCCC--ChhhhCEEeCCCCCCcccccccccccccceE--ecCcccCCHHHHHHHHHHHHHHHHHHHHhCcce
Confidence 999999999999 9999999999999999999999999999999 9999987764 22
Q ss_pred ----EecCCccCcccccCCccccccCcchhhhhHHHHHHHhccCC
Q psy2265 144 ----IPKSKREGRQDRRNPQPFLERTSSVQDKIKDLALTRQARYQ 184 (196)
Q Consensus 144 ----~~~~~keg~~~~r~~~~~~~~~~~~~~~i~~~~~~r~~~~~ 184 (196)
.++.||||+|+|+++.+..++.+++++||.+++.+|..||+
T Consensus 315 ~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (875)
T PRK14015 315 CRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFA 359 (875)
T ss_pred ecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc
Confidence 49999999999999777777889999999999999999985
No 4
>KOG1046|consensus
Probab=100.00 E-value=2.1e-34 Score=284.75 Aligned_cols=142 Identities=32% Similarity=0.460 Sum_probs=128.4
Q ss_pred CccCCCCCcccCC----CceeEEEecCCCCCchhhheeeecCceEE-ecCCceEEEEEec----cchHHHHHHHHHHHHH
Q psy2265 17 QPSLSKAGKQQST----GHETAPFWDCSDIRCQQIACCWVPAAPLR-LGEVELRKRVACR----RMGQYIFDKGPKILAA 87 (196)
Q Consensus 17 ~~aLSN~~~~~~~----g~~~~~f~~tppmstYLfA~v~G~~~~~~-~s~~~v~lrV~sr----~~~~~Al~~~~k~l~~ 87 (196)
++||||||...+. |+++++|++||||||||+||++|++++.+ .+..++++|||++ +++.+|++.+++++++
T Consensus 190 ~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~ 269 (882)
T KOG1046|consen 190 YTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEF 269 (882)
T ss_pred ceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHH
Confidence 5799999986553 68999999999999999999999999987 5566799999999 7899999999999999
Q ss_pred HHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcccccccCCCcCCCc-------ee-----------------
Q psy2265 88 LSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQG-------FI----------------- 143 (196)
Q Consensus 88 ~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~l~~L~dp~t~td~-------~~----------------- 143 (196)
+|+|||++| ||||+|+||||||.+|||||||||+|+|..+ |+||++++.. +|
T Consensus 270 ~e~~f~i~y--PLpK~D~iavPdf~~GAMENwGLvtyre~~l--L~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~w 345 (882)
T KOG1046|consen 270 YEDYFGIPY--PLPKLDLVAVPDFSAGAMENWGLVTYRETAL--LYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKW 345 (882)
T ss_pred HHHHhCCCC--CCccccEEecCCccccchhcCcceeeeehhh--ccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhh
Confidence 999999999 9999999999999999999999999999999 9999887775 22
Q ss_pred -EecCCccCcccccCCccccc
Q psy2265 144 -IPKSKREGRQDRRNPQPFLE 163 (196)
Q Consensus 144 -~~~~~keg~~~~r~~~~~~~ 163 (196)
-+|.|+||+..|.. .+..+
T Consensus 346 W~dLWLnEGfAt~~~-~~~v~ 365 (882)
T KOG1046|consen 346 WNDLWLNEGFATYVE-YLAVD 365 (882)
T ss_pred hhhhhhcccHHHHHH-HHhhc
Confidence 29999999999988 44444
No 5
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.95 E-value=1.1e-28 Score=242.69 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=120.0
Q ss_pred hhcccccCccC-----------------CCCCcccCC---CceeEEEecCCCCCchhhheeeecCceEEecCCceEEEEE
Q psy2265 10 MTQACNSQPSL-----------------SKAGKQQST---GHETAPFWDCSDIRCQQIACCWVPAAPLRLGEVELRKRVA 69 (196)
Q Consensus 10 ~~~~~~~~~aL-----------------SN~~~~~~~---g~~~~~f~~tppmstYLfA~v~G~~~~~~~s~~~v~lrV~ 69 (196)
..|+|++++++ |||++.+.. |+...+|..||||||||+||++|+++..+.+.+++++++|
T Consensus 131 ~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~~~gvpi~v~ 210 (831)
T TIGR02412 131 RVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQDESRSYPLGIY 210 (831)
T ss_pred eeEecCCCCCCceeEEEEEEECCCceEECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEeecCCCEEEEEE
Confidence 45899888654 999874432 5677889999999999999999999998877788999999
Q ss_pred ec-c-----chHHHHHHHHHHHHHHHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcccccccCCCcCCC---
Q psy2265 70 CR-R-----MGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQ--- 140 (196)
Q Consensus 70 sr-~-----~~~~Al~~~~k~l~~~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~l~~L~dp~t~td--- 140 (196)
++ + +.+++++.++++++++|++||+|| |++|+|+|++|+|+.|||||||+|+|+|.++ +.++.+..+
T Consensus 211 ~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pY--P~~k~d~V~vP~f~~GaMEn~Glit~~e~~l--~~~~~~~~~~~~ 286 (831)
T TIGR02412 211 ARRSLAQYLDADAIFTITRQGLAFFHRKFGYPY--PFKKYDQIFVPEFNAGAMENAGCVTFAENFL--HRAEATRAEKEN 286 (831)
T ss_pred ECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCC--CcccCCEEEcCCCCCCcccccceeeechhhc--cCCcCCHHHHHH
Confidence 99 2 257899999999999999999999 9999999999999999999999999999965 433322111
Q ss_pred --cee------------------EecCCccCcccccC
Q psy2265 141 --GFI------------------IPKSKREGRQDRRN 157 (196)
Q Consensus 141 --~~~------------------~~~~~keg~~~~r~ 157 (196)
.+| -.+-|+||++.|-.
T Consensus 287 ~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e 323 (831)
T TIGR02412 287 RAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMG 323 (831)
T ss_pred HHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHH
Confidence 122 27899999988754
No 6
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.94 E-value=5.5e-28 Score=214.72 Aligned_cols=144 Identities=28% Similarity=0.388 Sum_probs=116.6
Q ss_pred cCccCCCCCcccC----CCceeEEEecCCCCCchhhheeeecCceEEec-CCceEEEEEec----cchHHHHHHHHHHHH
Q psy2265 16 SQPSLSKAGKQQS----TGHETAPFWDCSDIRCQQIACCWVPAAPLRLG-EVELRKRVACR----RMGQYIFDKGPKILA 86 (196)
Q Consensus 16 ~~~aLSN~~~~~~----~g~~~~~f~~tppmstYLfA~v~G~~~~~~~s-~~~v~lrV~sr----~~~~~Al~~~~k~l~ 86 (196)
+++|+|||+..+. .|+++++|..++|||+||+||++|+++..+.. ..++++++|++ ++.+++++.++++++
T Consensus 160 ~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~ 239 (390)
T PF01433_consen 160 DYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALE 239 (390)
T ss_dssp TTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHH
T ss_pred cceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHH
Confidence 3578999998544 38999999999999999999999999988744 34699999999 678899999999999
Q ss_pred HHHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcccccccCCCcCCCc-------ee------------E---
Q psy2265 87 ALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQG-------FI------------I--- 144 (196)
Q Consensus 87 ~~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~l~~L~dp~t~td~-------~~------------~--- 144 (196)
++|++||++| |++|+|+|++|+|..|||||||+|+|+|..+ +++|+.++.. +| +
T Consensus 240 ~~~~~~g~~y--p~~k~~~v~~p~~~~~~me~~g~i~~~~~~l--~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~ 315 (390)
T PF01433_consen 240 YYEEYFGIPY--PFKKLDIVAVPDFPFGGMENWGLITYRESYL--LYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPK 315 (390)
T ss_dssp HHHHHHTS----SSSEEEEEEEST-SSSEE--TTEEEEEGGGT--S-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEES
T ss_pred HHHhhccccc--eecceeEEEEecccccccccccccccccccc--ccCcccccchhhhhhHHHHHHHHHHHHhccCCccc
Confidence 9999999999 9999999999999999999999999999999 9999988864 11 1
Q ss_pred ---ecCCccCcccccCCccccc
Q psy2265 145 ---PKSKREGRQDRRNPQPFLE 163 (196)
Q Consensus 145 ---~~~~keg~~~~r~~~~~~~ 163 (196)
.+-|+|||+.|-.......
T Consensus 316 ~w~d~WL~Eg~a~y~~~~~~~~ 337 (390)
T PF01433_consen 316 WWSDLWLNEGFATYLEYLILEK 337 (390)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHhHhh
Confidence 5779999999988444333
No 7
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.87 E-value=1.1e-22 Score=194.69 Aligned_cols=138 Identities=22% Similarity=0.222 Sum_probs=109.2
Q ss_pred hhcccccCcc---------------C-CCCCcccC-CCceeEEEecCCCCCchhhheeeecCceEEecCCceEEEEEec-
Q psy2265 10 MTQACNSQPS---------------L-SKAGKQQS-TGHETAPFWDCSDIRCQQIACCWVPAAPLRLGEVELRKRVACR- 71 (196)
Q Consensus 10 ~~~~~~~~~a---------------L-SN~~~~~~-~g~~~~~f~~tppmstYLfA~v~G~~~~~~~s~~~v~lrV~sr- 71 (196)
..|+|+++++ + ||++.... .+....+|.+++|||+||+||++|+++.... +..+++|++
T Consensus 137 ~~fPC~D~P~~Katf~~~I~~P~~av~sg~~~~~~~~~~~~~~F~~t~pmptYLia~avG~~~~~~~---g~~~~v~~~p 213 (601)
T TIGR02411 137 SVIPCQDTPSVKSTYTAEVESPLPVLMSGIPDGETSNDPGKYLFKQKVPIPAYLIALASGDLASAPI---GPRSSVYSEP 213 (601)
T ss_pred eeeeecCCcccceEEEEEEeeCcceeccCCccccccCCCceEEEEeCCCcchhhheeeeccceeccc---CCceEEEccc
Confidence 4578877764 4 55554322 2556789999999999999999999987543 456899998
Q ss_pred ---cchHHHHH-HHHHHHHHHHHHhCCcCCCCCCcccEEEe-CCCCCCcccchhhhhhhhcccccccCCCcCCCcee---
Q psy2265 72 ---RMGQYIFD-KGPKILAALSDYMGLDYYTMLPKMDLVAV-PDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFI--- 143 (196)
Q Consensus 72 ---~~~~~Al~-~~~k~l~~~E~~fgi~Y~~pL~KlD~VAV-PdF~~GAMENwGLitf~E~~l~~L~dp~t~td~~~--- 143 (196)
++++++++ .++++++++|++ +.|| |++|||+|++ |+|++|||||||+ +|.+..+ |++.....+ +|
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~e~~-~~pY--p~~k~d~vvlpp~f~~GgMEN~~l-tf~~~~l--l~~d~s~~~-viaHE 286 (601)
T TIGR02411 214 EQLEKCQYEFEHDTENFIKTAEDL-IFPY--EWGQYDLLVLPPSFPYGGMENPNL-TFATPTL--IAGDRSNVD-VIAHE 286 (601)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHh-CCCC--cCccceEEEecCcccccccccccc-eeecccc--ccCChhhhh-hHHHH
Confidence 67888998 999999999986 7799 9999999987 7999999999995 8999988 765433222 22
Q ss_pred ---------------EecCCccCcccccC
Q psy2265 144 ---------------IPKSKREGRQDRRN 157 (196)
Q Consensus 144 ---------------~~~~~keg~~~~r~ 157 (196)
-.+-|+||+|+|-.
T Consensus 287 lAHqWfGNlVT~~~W~d~WLnEGfaty~e 315 (601)
T TIGR02411 287 LAHSWSGNLVTNCSWEHFWLNEGWTVYLE 315 (601)
T ss_pred HHhhccCceeecCCchHHHHHhhHHHHHH
Confidence 17889999999855
No 8
>KOG1047|consensus
Probab=99.40 E-value=2.4e-13 Score=128.59 Aligned_cols=128 Identities=22% Similarity=0.173 Sum_probs=103.0
Q ss_pred CceeEEEecCCCCCchhhheeeecCceEEecCCceEEEEEec----cchHHHHH-HHHHHHHHHHHHhCCcCCCCCCccc
Q psy2265 30 GHETAPFWDCSDIRCQQIACCWVPAAPLRLGEVELRKRVACR----RMGQYIFD-KGPKILAALSDYMGLDYYTMLPKMD 104 (196)
Q Consensus 30 g~~~~~f~~tppmstYLfA~v~G~~~~~~~s~~~v~lrV~sr----~~~~~Al~-~~~k~l~~~E~~fgi~Y~~pL~KlD 104 (196)
|+....|....|+|+||+||++|+.+....+. .-+||++ +.|.+-+. .+.++++.-|+.+| || ++.+||
T Consensus 183 ~~~~f~f~q~~pIP~YLiai~~G~L~s~eIgp---Rs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY--~WgryD 256 (613)
T KOG1047|consen 183 GRAIFRFKQEVPIPSYLIAIAVGDLESREIGP---RSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PY--VWGRYD 256 (613)
T ss_pred CcceEEEEeccCchhhhHHHhhccccccccCC---ccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-Cc--ccccce
Confidence 56678899999999999999999999888654 3799999 78888888 99999999999999 99 999999
Q ss_pred EEEe-CCCCCCcccchhhhhhhhcccccccCCCcCCCcee-----------E------ecCCccCcccccCCccccccCc
Q psy2265 105 LVAV-PDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFI-----------I------PKSKREGRQDRRNPQPFLERTS 166 (196)
Q Consensus 105 ~VAV-PdF~~GAMENwGLitf~E~~l~~L~dp~t~td~~~-----------~------~~~~keg~~~~r~~~~~~~~~~ 166 (196)
+|.+ |.|++|||||.-| +|-...| |+--.+..+.+. + --=|-||+|||=.-+-...+..
T Consensus 257 llvlPpSFP~gGMENPcl-tF~TpTl--laGDrsl~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g 333 (613)
T KOG1047|consen 257 LLVLPPSFPFGGMENPCL-TFVTPTL--LAGDRSLVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYG 333 (613)
T ss_pred EEEecCCCCcccccCcce-eeecchh--hcCCcchhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhhhhcc
Confidence 9999 5799999999998 6878887 766555544321 0 2347899999976444433333
No 9
>KOG1932|consensus
Probab=96.65 E-value=0.0043 Score=63.68 Aligned_cols=108 Identities=8% Similarity=-0.036 Sum_probs=82.1
Q ss_pred ccCCCCCc-----ccCCCceeEEEecCCCCCchhhheeeecCceEEecCCceEEEEEec----cchHHHHHHHHHHHHHH
Q psy2265 18 PSLSKAGK-----QQSTGHETAPFWDCSDIRCQQIACCWVPAAPLRLGEVELRKRVACR----RMGQYIFDKGPKILAAL 88 (196)
Q Consensus 18 ~aLSN~~~-----~~~~g~~~~~f~~tppmstYLfA~v~G~~~~~~~s~~~v~lrV~sr----~~~~~Al~~~~k~l~~~ 88 (196)
.++|++-. ..+...++.+|..+-|+...-+||++|.|+.... ...+++..+|- +-....--...++++|+
T Consensus 212 ~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~-P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefy 290 (1180)
T KOG1932|consen 212 VAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE-PSMIDITHFCLPGLEPLVKNTTVYLHKAIEFY 290 (1180)
T ss_pred eeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC-CccCcceeEecCcchHHhhhHHHHHHHHHHHH
Confidence 45555544 2233678899999999999899999999988732 23567777776 44566666788999999
Q ss_pred HHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhhcc
Q psy2265 89 SDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLA 128 (196)
Q Consensus 89 E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E~~ 128 (196)
|++++..| |++-|-+|.||.=...-|--..|.++..+.
T Consensus 291 e~~ls~rY--PF~~~k~VFvd~~~~~i~~~asl~I~st~l 328 (1180)
T KOG1932|consen 291 EEELSSRY--PFSCYKTVFVDEAAVEISSYASLSIFSTSL 328 (1180)
T ss_pred HHHhccCC--CcceeeEEEecCCcceeeecceeeeeeccc
Confidence 99999999 999999999997665555555665555544
No 10
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=39.91 E-value=1.2e+02 Score=29.95 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=45.8
Q ss_pred ecCCceEEEEEec---cchHHHHHHHHHHHHHHHHHhCCcCCCCCCcccEE-EeCCCCCCcccch
Q psy2265 59 LGEVELRKRVACR---RMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLV-AVPDFDAGAMENW 119 (196)
Q Consensus 59 ~s~~~v~lrV~sr---~~~~~Al~~~~k~l~~~E~~fgi~Y~~pL~KlD~V-AVPdF~~GAMENw 119 (196)
..+....+.+|.+ ...+--.+.+++++..-.+.||- - |++||+.+ .+-+=..||||..
T Consensus 165 ~~g~ph~~~~~g~~p~~d~~~~~~~~k~ii~~~~~vFg~-~--~~~~Y~Fl~~~s~q~~GGlEH~ 226 (558)
T COG3975 165 VTGAPHTIALRGELPNFDKERLASDTKKIIEAEIKVFGS-A--PFDKYVFLLHLSDQIYGGLEHR 226 (558)
T ss_pred ccCCceeEEEeeccccccHHHHHHHHHHHHHHHHHHhcC-C--CccceEEEEEecCCCCCCceec
Confidence 4567778888887 35677788899999999999998 3 77888877 4577778999963
No 11
>KOG0672|consensus
Probab=30.04 E-value=44 Score=28.89 Aligned_cols=44 Identities=25% Similarity=0.457 Sum_probs=31.7
Q ss_pred HHHHHHHH-HHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhhh
Q psy2265 81 GPKILAAL-SDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRL 126 (196)
Q Consensus 81 ~~k~l~~~-E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~E 126 (196)
+++=+.-+ |+++|+....|..|-- +.-|...|||--||.|.=.=
T Consensus 157 T~~hl~~l~~~~~~~~~i~pieK~l--icGDiGlG~Mae~~~IV~~V 201 (218)
T KOG0672|consen 157 TKKHLTSLKEEYPGITVIKPIEKVL--ICGDIGLGGMAEWGTIVSKV 201 (218)
T ss_pred hHHHHHHHHHhcCCcEEecchheeE--eccccCccccccHHHHHHHH
Confidence 44444444 5588988766777744 78999999999999876443
No 12
>KOG3724|consensus
Probab=23.28 E-value=93 Score=32.36 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCcCCCCCCcccEEEeCCCCCCcccchhhhhhh---hcc---cccccCCCcCCC
Q psy2265 72 RMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR---LLA---STQLVEPYSNCQ 140 (196)
Q Consensus 72 ~~~~~Al~~~~k~l~~~E~~fgi~Y~~pL~KlD~VAVPdF~~GAMENwGLitf~---E~~---l~~L~dp~t~td 140 (196)
++++|..+..+.+++.+++ ..+| +.|+..=|++=.-.||||=-.-+.++. .+. ++-++.|+.+..
T Consensus 154 dQtEYV~dAIk~ILslYr~--~~e~--~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH~a~P 224 (973)
T KOG3724|consen 154 DQTEYVNDAIKYILSLYRG--EREY--ASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPHAAPP 224 (973)
T ss_pred HHHHHHHHHHHHHHHHhhc--cccc--CCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcccCCC
Confidence 7899999999999999998 5677 555555556666679999777766665 122 122566666554
Done!