RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2265
(196 letters)
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 92.4 bits (230), Expect = 3e-22
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 74 GQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
+Y D K + +Y G+ Y LPKM L++VP+F AGAMENWG T+R
Sbjct: 192 SKYPLDMARKSVEFYENYFGIPYA--LPKMHLISVPEFGAGAMENWGAITFR 241
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 92.1 bits (229), Expect = 4e-22
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 67 RVACRR----MGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMN 122
V Y D +L DY + Y LPK DL A+PDF +GAMENWG+
Sbjct: 223 SVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYP--LPKQDLAAIPDFQSGAMENWGLT 280
Query: 123 TYR 125
TYR
Sbjct: 281 TYR 283
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 91.8 bits (228), Expect = 5e-22
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 67 RVACRR----MGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMN 122
+ Y K+L Y + Y L K+DL+A+PDF GAMENWG+
Sbjct: 285 SIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYP--LSKLDLIAIPDFAPGAMENWGLI 342
Query: 123 TYR 125
TYR
Sbjct: 343 TYR 345
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 69.5 bits (170), Expect = 2e-14
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 61 EVELRKRVACRR----MGQYIFDKGPKILAALSDYMGLDYYTMLPKMD-LVAVPDFDAGA 115
+ R V Q+ F+ + ++ + +Y D LV V + G
Sbjct: 218 PIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEYE--WGTYDILVNVDSYPYGG 275
Query: 116 MENWGMNTYR 125
ME+ M
Sbjct: 276 MESPNMTFAT 285
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 69.4 bits (170), Expect = 2e-14
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 61 EVELRKRVACRR----MGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVP-DFDAGA 115
+ + + FD ++ G Y + DL+ +P F G
Sbjct: 218 AMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYR--WGRYDLLMLPPSFPFGG 274
Query: 116 MENWGMNTYR 125
MEN ++
Sbjct: 275 MENPRLSFIT 284
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 66.4 bits (162), Expect = 3e-13
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 74 GQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVP-DFDAGAMENWGMNTYR 125
Y F + +L D G Y + + DL+ +P F G MEN +
Sbjct: 236 SAYEFSETESMLKIAEDLGG-PY--VWGQYDLLVLPPSFPYGGMENPCLTFVT 285
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 60.7 bits (147), Expect = 3e-11
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 74 GQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR---LLAS 129
Q+ + K +A DY GL+Y L +++LVAV DF+ GAMEN G+N + LLAS
Sbjct: 227 LQWALECLKKSMAFDEDYFGLEY--DLSRLNLVAVSDFNVGAMENKGLNIFNANSLLAS 283
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 52.6 bits (126), Expect = 2e-08
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 74 GQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
+ + + GL+Y L +VAV F+ GAMEN G+N +
Sbjct: 244 APWAMTSLKNSMKWDEERFGLEY--DLDIYMIVAVDFFNMGAMENKGLNIFN 293
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 50.7 bits (121), Expect = 8e-08
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 74 GQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYR 125
+ + + GL+Y L +VAV DF+ GAMEN G+N +
Sbjct: 219 VGFAVESLKNAMKWDETRFGLEY--DLDIFMVVAVGDFNMGAMENKGLNIFN 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 48/243 (19%), Positives = 66/243 (27%), Gaps = 131/243 (53%)
Query: 7 ELLMTQACNSQPSL---SKA--------GKQQST----GHETAPFWDCSDIRCQQIACCW 51
L TQ +QP+L KA G + GH S
Sbjct: 1725 LLSATQ--FTQPALTLMEKAAFEDLKSKGLIPADATFAGH--------S----------- 1763
Query: 52 VPAAPLRLGEVELRKRVACRRMGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLV----- 106
LGE A LA+L+D M ++ LV
Sbjct: 1764 -------LGEY-----AA---------------LASLADVMSIE--------SLVEVVFY 1788
Query: 107 -------AVPDFDAGAMENWGM---NTYRLLA-----------------STQLVEP--YS 137
AVP D N+GM N R+ A + LVE Y
Sbjct: 1789 RGMTMQVAVPR-DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY- 1846
Query: 138 NCQGFIIPKSKREGRQ-----DRRNPQPFLERTSSVQD-----KIKDLALTRQARYQPKL 187
N E +Q D R L+ ++V + KI + L + +
Sbjct: 1847 NV----------ENQQYVAAGDLRA----LDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 188 TML 190
L
Sbjct: 1893 GHL 1895
Score = 32.3 bits (73), Expect = 0.10
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 60/141 (42%)
Query: 92 MGLDYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFII------- 144
MG+D Y A A + W A + Y GF I
Sbjct: 1631 MGMDLYK-----------TSKA-AQDVWN------RADNHFKDTY----GFSILDIVINN 1668
Query: 145 PKSK------REGRQDRRNPQPFL-------------------ERTSSV--QDKIKDLAL 177
P + +G++ R N + E ++S + + L+
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 178 TRQARYQPKL-TM-LATLKFL 196
T+ QP L M A + L
Sbjct: 1729 TQFT--QPALTLMEKAAFEDL 1747
Score = 28.1 bits (62), Expect = 2.4
Identities = 27/155 (17%), Positives = 41/155 (26%), Gaps = 45/155 (29%)
Query: 53 PAAPLRLGEVELRKRVACRRMGQY-I-FDK-GPKILAALSDYMGLDYYTMLPKMDLVAVP 109
P L + LRK A + Q I F + K LP VA P
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-----------SNRFLP----VASP 426
Query: 110 DF------DAGAM-ENWGMNTYRLLASTQLVEP-YSNCQGFIIPKSKREGRQDRRNPQPF 161
F A + + + + P Y G D R
Sbjct: 427 -FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----------SDLR----- 469
Query: 162 LERTSSVQDKIKDLALTRQARYQPKLTMLATLKFL 196
+ S+ ++I D + ++ T L
Sbjct: 470 -VLSGSISERIVDCIIRLPVKW-ETTTQFKATHIL 502
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A
{Thermosphaera aggregans} SCOP: c.1.8.4
Length = 481
Score = 28.4 bits (64), Expect = 1.8
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 74 GQYIFDKG-PKILAALSDYMGLDYYT 98
G I + + LA D++G++YY+
Sbjct: 297 GSSIINVEYRRDLANRLDWLGVNYYS 322
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B
1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Length = 260
Score = 27.8 bits (61), Expect = 2.1
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 95 DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
+++ P +++V + D + NW + R+ S ++ Y+N + +I S + Q+
Sbjct: 70 EFHAKFPNVNIVDLTD-KVIVINNWSLELRRV-NSAEVFTSYANLEARLIVHSFKPNLQE 127
Query: 155 RRNPQPF 161
R NP +
Sbjct: 128 RLNPTRY 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 6.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 16/39 (41%)
Query: 163 ERTSSVQDKIKDLALTRQAR---YQ----PKLTMLATLK 194
E+ + +K L QA Y P L + AT++
Sbjct: 18 EKQA-----LKKL----QASLKLYADDSAPALAIKATME 47
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein
complex, structural protein/DNA complex; 1.91A
{Sterkiella nova} SCOP: b.40.4.3
Length = 385
Score = 26.5 bits (57), Expect = 6.6
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 95 DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
+++ P +++V + D + NW + R+ S ++ Y+N + +I S + Q+
Sbjct: 70 EFHAKFPNVNIVDLTD-KVIVINNWSLELRRV-NSAEVFTSYANLEARLIVHSFKPNLQE 127
Query: 155 RRNPQPF 161
R NP +
Sbjct: 128 RLNPTRY 134
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 26.2 bits (57), Expect = 7.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 14 CNSQPSLSKAGKQQSTGHETAPFWDCSDIRCQQIAC 49
C Q S+ + G FW + R ++C
Sbjct: 140 CIDQLLYSQDKHEYYRG----WFWGYEETRGLNVSC 171
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of
dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN;
1.60A {Thermoanaerobacter pseudethanolicus AT} PDB:
3krz_A*
Length = 343
Score = 26.3 bits (59), Expect = 7.2
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 56 PLRLGEVELRKRVACRRMGQY 76
PL++ ++ ++ R+ M Y
Sbjct: 7 PLKIKDITIKNRIMMSPMCMY 27
>2xrb_A Complement regulatory protein CRRY; immune system, immunology;
2.50A {Rattus norvegicus} PDB: 2xrd_A
Length = 290
Score = 26.1 bits (57), Expect = 7.2
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 37 WDCSDIRCQQIACCWVPAAP 56
W +C ++ C P
Sbjct: 220 WSGPPPQCIELNKCTPPHVE 239
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN,
beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis}
SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Length = 338
Score = 25.9 bits (58), Expect = 8.6
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 56 PLRLGEVELRKRVACRRMGQY 76
P+ + ++ L+ R+ M Y
Sbjct: 8 PITIKDMTLKNRIVMSPMCMY 28
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel,
oxidoreductase, flavoprotein; HET: FMN; 2.30A
{Geobacillus kaustophilus} PDB: 3gr8_A*
Length = 340
Score = 26.0 bits (58), Expect = 8.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 56 PLRLGEVELRKRVACRRMGQY 76
P + + L+ R+ M Y
Sbjct: 8 PYTIRGLTLKNRIVMSPMCMY 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.413
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,882,500
Number of extensions: 161148
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 24
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)