RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2265
         (196 letters)



>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 61  EVELRKRVACRR----MGQYIFDKGPKILAALSDYMGLDYYTMLPKMDLVAV-PDFDAGA 115
           ++  R  V   +       Y F +   +L    D  G  Y     + DL+ + P F  G 
Sbjct: 5   QIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYV--WGQYDLLVLPPSFPYGG 61

Query: 116 MENWGMNTYR 125
           MEN  +    
Sbjct: 62  MENPCLTFVT 71


>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
           beta subunit {Oxytricha nova [TaxId: 200597]}
          Length = 216

 Score = 27.3 bits (60), Expect = 1.1
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 95  DYYTMLPKMDLVAVPDFDAGAMENWGMNTYRLLASTQLVEPYSNCQGFIIPKSKREGRQD 154
           +++   P +++V + D     + NW +   R+  S ++   Y+N +  +I  S +   Q+
Sbjct: 62  EFHAKFPNVNIVDLTD-KVIVINNWSLELRRV-NSAEVFTSYANLEARLIVHSFKPNLQE 119

Query: 155 RRNP 158
           R NP
Sbjct: 120 RLNP 123


>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 340

 Score = 26.5 bits (57), Expect = 2.2
 Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 2/29 (6%)

Query: 110 DFDAGAMENWGMNTYRLLASTQLVEPYSN 138
           D +   +   G +  RL     ++E   N
Sbjct: 33  DIET--IAEAGFDHVRLPFDYPIIESDDN 59


>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus
           [TaxId: 5087]}
          Length = 305

 Score = 25.9 bits (56), Expect = 3.3
 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 110 DFDAGAMENWGMNTYRLLASTQLVEPYSN 138
             D   + + GMN +R+    + + P S 
Sbjct: 36  TIDT--LISKGMNIFRVPFMMERLVPNSM 62


>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 325

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 2/29 (6%)

Query: 110 DFDAGAMENWGMNTYRLLASTQLVEPYSN 138
           DF    M  W  N  R+     L     N
Sbjct: 25  DFLW--MAQWDFNFVRIPMCHLLWSDRGN 51


>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida
           albicans) [TaxId: 5476]}
          Length = 394

 Score = 24.9 bits (53), Expect = 8.0
 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)

Query: 110 DFDAGAMENWGMNTYRLLASTQLVEPYSN 138
           DF    + N G+N  R+       +   N
Sbjct: 73  DFKQ--ISNLGLNFVRIPIGYWAFQLLDN 99


>d2pspa2 g.16.1.1 (A:54-106) Pancreatic spasmolytic polypeptide
          {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 53

 Score = 22.9 bits (49), Expect = 9.3
 Identities = 5/21 (23%), Positives = 7/21 (33%)

Query: 36 FWDCSDIRCQQIACCWVPAAP 56
          +   S   C    CC+    P
Sbjct: 17 YPGISPEDCAARNCCFSDTIP 37


>d1hi7a_ g.16.1.1 (A:) PNR-2/PS2, TFF1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 60

 Score = 22.9 bits (49), Expect = 9.4
 Identities = 3/13 (23%), Positives = 4/13 (30%)

Query: 44 CQQIACCWVPAAP 56
          C    CC+     
Sbjct: 27 CANKGCCFDDTVR 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 711,068
Number of extensions: 31677
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 12
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)