RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2266
(313 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 152 bits (386), Expect = 1e-44
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 148 SFGQRAETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVP-SQELRQTLFNE 206
F +AE T+ TNFF VC L PL++P RVVNV+S + + S EL+Q +E
Sbjct: 101 PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160
Query: 207 SLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDI 266
++TE++L+ +M +V+ K+G ++ GWP +Y V+K+GV LS I LS+ ++ I
Sbjct: 161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKI 220
Query: 267 IVNPVHPGYVNTDLTEHKGVLTPEQG 292
++N PG+V TD+ K +PE+G
Sbjct: 221 LLNACCPGWVRTDMAGPKATKSPEEG 246
Score = 133 bits (336), Expect = 2e-37
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGI-YRDTAPGSFGQRAETT 63
+ + RFHQLDI D SI L D ++ ++GGLD+LVNNAGI ++ P F +AE T
Sbjct: 50 QAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVT 109
Query: 64 LATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVP-SQELRQTLFNESLTEDQLLD 122
+ TNFF VC L PL++P RVVNV+S + + S EL+Q +E++TE++L+
Sbjct: 110 MKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVG 169
Query: 123 MMTDYVQ 129
+M +V+
Sbjct: 170 LMNKFVE 176
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 132 bits (333), Expect = 1e-36
Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 74/298 (24%)
Query: 1 QKVCKNNNNNVRFHQLDILDQ-SSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQR 59
+K+ +N+ NV FHQLD+ D +++
Sbjct: 54 EKLKNSNHENVVFHQLDVTDPIATM---------------------------------SS 80
Query: 60 AETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQ 119
+ T+F L IL N A G+ + + + ++ + +
Sbjct: 81 LADFIKTHFGKL----DILV----------NNA---GVAGFSVDADRFKAMISDIGEDSE 123
Query: 120 LLDMMTDYVQYNGPLDKILDTAMDTAPGSFGQRAETTLATNFFALVTVCHILFPLLR--P 177
L + + + + + + A E L N+ + +V +L PLL+
Sbjct: 124 ELVKIYEKPEAQELMSETYELA------------EECLKINYNGVKSVTEVLIPLLQLSD 171
Query: 178 HARVVNVASKLGMLYNVPSQELRQTLFN-ESLTEDQLLDMMTDYVQLAKEGKDKEAGWPE 236
R+VNV+S G L V ++ + L + ++LTE+++ ++ ++ KE + GWP
Sbjct: 172 SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPS 231
Query: 237 F--SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQG 292
F +Y+ SK + + + + P VN V PG V T++ G T E+G
Sbjct: 232 FGAAYTTSKACLNAYTRVLA------NKIPKFQVNCVCPGLVKTEMNYGIGNYTAEEG 283
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 77.4 bits (191), Expect = 8e-17
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 8 NNNVRFHQLDILDQSSIHKLHDDIQTQHG--GLDLLVNNAGIYRDTAPGSFGQRAE--TT 63
++ V L + S+ + G GL LL+NNAG+ + RA
Sbjct: 50 DSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQ 109
Query: 64 LATNFFALVTVCHILFPLLR-------------PHARVVNVASKLG 96
L N ++V + L PLL+ A V+ ++S LG
Sbjct: 110 LDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155
Score = 69.3 bits (170), Expect = 5e-14
Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 54/171 (31%)
Query: 154 ETTLATNFFALVTVCHILFPLLR-------------PHARVVNVASKLGMLYNVPSQELR 200
L N ++V + L PLL+ A V+ ++S LG
Sbjct: 107 AEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG----------- 155
Query: 201 QTLFNESLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKD 260
S+T+ A +P +Y +SK + TL+ D
Sbjct: 156 ------SITD----------------NTSGSAQFPVLAYRMSKAAINMFG----RTLAVD 189
Query: 261 KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQG--KIRQKIYLLKRTN--KF 307
+ +++V PG+V T+L LT EQ ++ L ++ +F
Sbjct: 190 LKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHNGRF 240
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 70.5 bits (173), Expect = 3e-14
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHG--GLDLLVNNAGIYRDTAPGSFGQRAE- 61
N++N+ ++D+ + + KL DI+ GL++L NNAGI +A + + E
Sbjct: 68 AKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQEL 127
Query: 62 -TTLATNFFALVTVCHILFPLLR-------------PHARVVNVASKLG 96
TL TN + + PLL+ A ++N++S LG
Sbjct: 128 LDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 176
Score = 61.2 bits (149), Expect = 4e-11
Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 54/152 (35%)
Query: 154 ETTLATNFFALVTVCHILFPLLR-------------PHARVVNVASKLGMLYNVPSQELR 200
TL TN + + PLL+ A ++N++S LG
Sbjct: 128 LDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG----------- 176
Query: 201 QTLFNESLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKD 260
S+ + G +Y SK + + +LS D
Sbjct: 177 ------SIQGNTD------------------GGMY--AYRTSKSALNAAT----KSLSVD 206
Query: 261 KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQG 292
I+ +HPG+V TD+ L
Sbjct: 207 LYPQRIMCVSLHPGWVKTDMGGSSAPLDVPTS 238
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 68.4 bits (168), Expect = 1e-13
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYR-----DTAPGSFGQ 58
CK V +D ++ I+ ++ + G + +LVNNAG+ T
Sbjct: 75 CKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQI-- 132
Query: 59 RAETTLATNFFALVTVCHILFPLL--RPHARVVNVASKLGML 98
E T N A P + H +V VAS G +
Sbjct: 133 --EKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV 172
Score = 42.2 bits (100), Expect = 9e-05
Identities = 27/148 (18%), Positives = 40/148 (27%), Gaps = 54/148 (36%)
Query: 154 ETTLATNFFALVTVCHILFPLL--RPHARVVNVASKLGMLYNVPSQELRQTLFNESLTED 211
E T N A P + H +V VAS G + VP
Sbjct: 133 EKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS-VPFLL------------- 178
Query: 212 QLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLS---KDKRRPDIIV 268
+Y SK + F H TL+ + +
Sbjct: 179 --------------------------AYCSSKFAA--VGF--HKTLTDELAALQITGVKT 208
Query: 269 NPVHPGYVNTDLTEHK-----GVLTPEQ 291
+ P +VNT ++ L PE+
Sbjct: 209 TCLCPNFVNTGFIKNPSTSLGPTLEPEE 236
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 66.7 bits (163), Expect = 9e-13
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTL 64
++N+ ++R +LD+ Q S+ + D I + G +D+L++NAG FG T
Sbjct: 55 RDNDVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGH------MVFGPAEAFTP 108
Query: 65 A-------TNFFALVTVCHILFPLLRP--HARVVNVASKLGMLYNVP 102
N + V P +R H ++ ++S P
Sbjct: 109 EQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP 155
Score = 30.5 bits (69), Expect = 0.66
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 9/58 (15%)
Query: 147 GSFGQRAETTLA-------TNFFALVTVCHILFPLLRP--HARVVNVASKLGMLYNVP 195
FG T N + V P +R H ++ ++S P
Sbjct: 98 MVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP 155
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 65.4 bits (160), Expect = 1e-12
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 12/98 (12%)
Query: 7 NNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT--- 63
N N + + I + + I ++ +D V AG + ++
Sbjct: 57 NPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNA-----SSDEFLKS 111
Query: 64 ----LATNFFALVTVCHILFPLLRPHARVVNVASKLGM 97
+ N ++ HI LL V + +
Sbjct: 112 VKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL 149
Score = 42.7 bits (101), Expect = 7e-05
Identities = 15/179 (8%), Positives = 37/179 (20%), Gaps = 63/179 (35%)
Query: 117 EDQLLDMMTDYVQYNGPLDKIL----------DTAMDTAPGSFGQRAETTLATNFFALVT 166
E+++ ++ + +D + + D S + + N ++
Sbjct: 71 EEEIKSVIEKINSKSIKVD-TFVCAAGGWSGGNASSDEFLKSV----KGMIDMNLYSAFA 125
Query: 167 VCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQLLDMMTDYVQLAKE 226
HI LL V + +
Sbjct: 126 SAHIGAKLLNQGGLFVLTGASAAL------------------------------------ 149
Query: 227 GKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTE 282
Y +K + L+ + + P ++T
Sbjct: 150 -----NRTSGMIAYGATKAATHHII----KDLASENGGLPAGSTSLGILPVTLDTPTNR 199
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 65.3 bits (160), Expect = 2e-12
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Query: 8 NNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGI----YRDTAPGSFGQRAETT 63
V +LD+ D SS+ + D + G D+L+NNAGI Y T G F E+
Sbjct: 61 AGQVEVRELDLQDLSSVRRFADGVS----GADVLINNAGIMAVPYALTVDG-F----ESQ 111
Query: 64 LATNF---FALVTVCHILFPLLRPHARVVNVAS 93
+ TN FAL ++L P L RVV V+S
Sbjct: 112 IGTNHLGHFALT---NLLLPRLT--DRVVTVSS 139
Score = 44.5 bits (106), Expect = 2e-05
Identities = 33/162 (20%), Positives = 47/162 (29%), Gaps = 62/162 (38%)
Query: 154 ETTLATNF---FALVTVCHILFPLLRPHARVVNVAS---KLGMLYNVPSQELRQTLFNES 207
E+ + TN FAL ++L P L RVV V+S G
Sbjct: 109 ESQIGTNHLGHFALT---NLLLPRLT--DRVVTVSSMAHWPG------------------ 145
Query: 208 LTEDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSK--DKRRPD 265
+ + + P +YS SKL A L F L +
Sbjct: 146 -------RINLEDLNWRSRRYS-----PWLAYSQSKL--ANLLFTSE--LQRRLTAAGSP 189
Query: 266 IIVNPVHPGYVNTDLTEHKG---------------VLTPEQG 292
+ HPGY +T+L G + G
Sbjct: 190 LRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDADFG 231
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 62.2 bits (152), Expect = 1e-11
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLA---- 65
V D+ + G +L+++ AG G FG T
Sbjct: 50 AVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGT------GEFGPVGVYTAEQIRR 103
Query: 66 ---TNFFALVTVCHILFPLLRPHA-RVVNVASKLG 96
+N + + V L+ + NV S
Sbjct: 104 VMESNLVSTILVAQQTVRLIGERGGVLANVLSSAA 138
Score = 47.6 bits (114), Expect = 1e-06
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 53/145 (36%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPHA-RVVNVASKLGMLYNVPSQELRQTLFNESLTEDQ 212
+ +N + + V L+ + NV S +
Sbjct: 102 RRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV--------------------- 140
Query: 213 LLDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPV 271
G S Y SK G+ +L + + + + +
Sbjct: 141 --------------------GKANESLYCASKWGMRGFL----ESLRAELKDSPLRLVNL 176
Query: 272 HPGYVNTDLTEH------KGVLTPE 290
+P + ++ ++ G +TPE
Sbjct: 177 YPSGIRSEFWDNTDHVDPSGFMTPE 201
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 62.6 bits (153), Expect = 1e-11
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
V + DI D + I L G +DLL NAG+ F Q +E A
Sbjct: 55 RVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSEL---EPFDQVSEASYDRQFA 111
Query: 66 TNFFALVTVCHILFPLLRPHARVVNVAS 93
N L PL+R +V +S
Sbjct: 112 VNTKGAFFTVQRLTPLIREGGSIVFTSS 139
Score = 39.4 bits (93), Expect = 6e-04
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 46/146 (31%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQL 213
+ A N L PL+R +V +S
Sbjct: 107 DRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG---------------------- 144
Query: 214 LDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVH 272
G P S YS SK + + + L+ + I VN V
Sbjct: 145 -------------------GHPGMSVYSASKAALVSFA----SVLAAELLPRGIRVNSVS 181
Query: 273 PGYVNTDLTEHKGVLTPEQGKIRQKI 298
PG+++T G+ E+ + +
Sbjct: 182 PGFIDTPTKGVAGITEAERAEFKTLG 207
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA 60
+K+ + + + DI + S + +L + HG +D LV NAG+ +
Sbjct: 42 KKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVN 101
Query: 61 E--TTLATNFFALVTVCHILFPLLR-PHARVVNVASKLGMLYN 100
NFF++V++ I P L+ + VV V+S +Y
Sbjct: 102 AWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYF 144
Score = 43.8 bits (104), Expect = 2e-05
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 53/157 (33%)
Query: 154 ETTLATNFFALVTVCHILFPLLR-PHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQ 212
+ NFF++V++ I P L+ + VV V+S +Y
Sbjct: 104 KKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYF------------------- 144
Query: 213 LLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVH 272
+ W +Y SK + + TL+ ++R + V
Sbjct: 145 -------------------SSWG--AYGSSKAALNHFA----MTLANEER--QVKAIAVA 177
Query: 273 PGYVNTDLTE------HKGVLTPEQGKIRQKIYLLKR 303
PG V+TD+ ++ EQ K+ + + +
Sbjct: 178 PGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQ 214
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 61.8 bits (151), Expect = 3e-11
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLATNFFALVTV 74
D ++ I D ++TQ L +V+NA + PG + + A +
Sbjct: 77 YGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLI 136
Query: 75 CHILFPLLRPHA--RVVNVAS 93
PLL +V+++
Sbjct: 137 NLHCEPLLTASEVADIVHISD 157
Score = 31.8 bits (73), Expect = 0.25
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 13/75 (17%)
Query: 231 EAGWPEF-SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTP 289
G + +Y +K G+ L+ + + P + VN + P + +
Sbjct: 161 RKGSSKHIAYCATKAGLESLT----LSFAAR-FAPLVKVNGIAPALLMFQPKD-----DA 210
Query: 290 EQ-GKIRQKIYLLKR 303
K L
Sbjct: 211 AYRANALAKS-ALGI 224
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 60.5 bits (147), Expect = 1e-10
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 23/109 (21%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT------ 63
+ D+ + +L D+ GG+D++ +NAGI G A+
Sbjct: 81 DAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGI------VVAGPLAQMNHDDWRW 134
Query: 64 -LATNFFALVTVCHILFPLLRPH---ARVVNVASKLGML-------YNV 101
+ + + + P L + AS G++ Y V
Sbjct: 135 VIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGV 183
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/147 (13%), Positives = 37/147 (25%), Gaps = 47/147 (31%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPH---ARVVNVASKLGMLYNVPSQELRQTLFNESLTE 210
+ + + + P L + AS G L
Sbjct: 133 RWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAG-LVPNAGL------------- 178
Query: 211 DQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNP 270
+Y V+K GV L+ TL+++ + I V+
Sbjct: 179 --------------------------GTYGVAKYGVVGLA----ETLAREVKPNGIGVSV 208
Query: 271 VHPGYVNTDLTEHKGVLTPEQGKIRQK 297
+ P V T L + + +
Sbjct: 209 LCPMVVETKLVSNSERIRGADYGMSAT 235
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 60.0 bits (146), Expect = 1e-10
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 29 DDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLATNFFALVTVCHILFPLLRP--HA 86
D + G+D LV AG+ T ++ N+F + P L+
Sbjct: 54 DVLAKCSKGMDGLVLCAGLGPQTKV------LGNVVSVNYFGATELMDAFLPALKKGHQP 107
Query: 87 RVVNVASKLGMLY 99
V ++S
Sbjct: 108 AAVVISSVASAHL 120
Score = 52.7 bits (127), Expect = 3e-08
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 18/159 (11%)
Query: 147 GSFGQRAETTLATNFFALVTVCHILFPLLRP--HARVVNVASKLGMLYNVPSQELRQTLF 204
G + ++ N+F + P L+ V ++S L L
Sbjct: 73 GPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALE 132
Query: 205 NESLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRP 264
+ + + +Y+ SK + +
Sbjct: 133 A------------GEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVR----KRAAAWGEA 176
Query: 265 DIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKIYLLKR 303
+ +N + PG T L + I + + + R
Sbjct: 177 GVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGR 215
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 59.7 bits (145), Expect = 2e-10
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 7 NNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLA- 65
++ QLD+ D S+ + + G +D+LV NAG+ G G
Sbjct: 55 PPGSLETLQLDVRDSKSVAAARERVT--EGRVDVLVCNAGL------GLLGPLEALGEDA 106
Query: 66 ------TNFFALVTVCHILFPLLRP--HARVVNVASKLGML 98
N V + P ++ RV+ S G++
Sbjct: 107 VASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM 147
Score = 30.1 bits (68), Expect = 0.79
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 159 TNFFALVTVCHILFPLLRP--HARVVNVASKLGML 191
N V + P ++ RV+ S G++
Sbjct: 113 VNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM 147
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 59.1 bits (144), Expect = 2e-10
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
Q D + + + +L++ ++ + G +D+L NAG G+ E T
Sbjct: 76 GAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGS---MLPLGEVTEEQYDDTFD 132
Query: 66 TNFFALVTVCHILFPLLRPHARVVNVASKLG 96
N ++ PLL + VV S G
Sbjct: 133 RNVKGVLFTVQKALPLLARGSSVVLTGSTAG 163
Score = 39.5 bits (93), Expect = 7e-04
Identities = 26/141 (18%), Positives = 37/141 (26%), Gaps = 46/141 (32%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQL 213
+ T N ++ PLL + VV S G
Sbjct: 128 DDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST---------------------- 165
Query: 214 LDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVH 272
G P FS Y+ SK + SF + D + I +N +
Sbjct: 166 -------------------GTPAFSVYAASKAAL--RSFAR--NWILDLKDRGIRINTLS 202
Query: 273 PGYVNTDLTEHKGVLTPEQGK 293
PG T P Q +
Sbjct: 203 PGPTETTGLVELAGKDPVQQQ 223
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 58.5 bits (142), Expect = 3e-10
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHG----GLDLLVNNAGIYRDTAPGSFG--- 57
+ + V D+ ++ + +L ++ LL+NNA D + G
Sbjct: 56 QQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVND 115
Query: 58 -QRAETTLATNFFALVTVCHILFPLLR----PHARVVNVASKLGM 97
A N +++ + + VVN++S +
Sbjct: 116 LAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160
Score = 37.3 bits (87), Expect = 0.003
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 52/156 (33%)
Query: 154 ETTLATNFFALVTVCHILFPLLR----PHARVVNVASKLGMLYNVPSQELRQTLFNESLT 209
A N +++ + + VVN++S +
Sbjct: 120 NNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY---------------- 163
Query: 210 EDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVN 269
GW Y K L L+ ++ P + V
Sbjct: 164 ----------------------KGWG--LYCAGKAARDMLY----QVLAAEE--PSVRVL 193
Query: 270 PVHPGYVNTDLTEH--KGVLTPEQGKIRQKIYLLKR 303
PG ++ D+ + + PE QK+
Sbjct: 194 SYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGA 229
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 59.0 bits (143), Expect = 4e-10
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 28/119 (23%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTL 64
+ + V QLD+ + D+++ + G + +L NNAG+ F E++
Sbjct: 55 EGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGV------NLFQPIEESSY 108
Query: 65 AT-------NFFALVTVCHILFPLLRPHAR--------VVNVASKLGML-------YNV 101
N +V P + + VVN AS L YN
Sbjct: 109 DDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNT 167
Score = 38.6 bits (90), Expect = 0.002
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
Y+ +K V LS +L + +I V+ + PG V + +
Sbjct: 165 YNTTKFAVRGLS----ESLHYSLLKYEIGVSVLCPGLVKSYIYAS 205
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 58.3 bits (142), Expect = 4e-10
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFA 70
L+ +L ++ + G LD L++NA I P Q + + N A
Sbjct: 72 NLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTP--LEQLPDEDFMQVMHVNVNA 129
Query: 71 LVTVCHILFPLLR--PHARVVNVASKLG 96
+ L PLL+ A + +S +G
Sbjct: 130 TFMLTRALLPLLKRSEDASIAFTSSSVG 157
Score = 33.3 bits (77), Expect = 0.077
Identities = 24/148 (16%), Positives = 38/148 (25%), Gaps = 54/148 (36%)
Query: 154 ETTLATNFFALVTVCHILFPLLR--PHARVVNVASKLGMLYNVPSQELRQTLFNESLTED 211
+ N A + L PLL+ A + +S +G
Sbjct: 120 MQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGR------------------ 161
Query: 212 QLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDII-VNP 270
A W +Y VSK +Q TL+ + + N
Sbjct: 162 --------------------ANWG--AYGVSKFAT--EGLMQ--TLADELEGVTAVRANS 195
Query: 271 VHPGYVNTDLTEH-------KGVLTPEQ 291
++PG T + PE
Sbjct: 196 INPGATRTGMRAQAYPDENPLNNPAPED 223
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 58.0 bits (141), Expect = 5e-10
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT-------LATN 67
Q DI S + L D + GGLD +++N+G+ E T N
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDE------LEVTQELFDKVFNLN 130
Query: 68 FFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQ 104
V R R++ +S ++ +P+
Sbjct: 131 TRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNH 167
Score = 38.7 bits (91), Expect = 0.001
Identities = 20/137 (14%), Positives = 33/137 (24%), Gaps = 43/137 (31%)
Query: 156 TLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQLLD 215
N V R R++ +S ++ +P+ L
Sbjct: 126 VFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHAL---------------- 169
Query: 216 MMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGY 275
Y+ SK V + D + VN + PG
Sbjct: 170 -----------------------YAGSKAAVEGFC----RAFAVDCGAKGVTVNCIAPGG 202
Query: 276 VNTDLTEHKGVLTPEQG 292
V TD+ + G
Sbjct: 203 VKTDMFDENSWHYAPGG 219
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 57.6 bits (140), Expect = 7e-10
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFFALVT 73
+ DI I KL D G LD+ V+N+G+ + + + N
Sbjct: 74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133
Query: 74 VCHILFPLLRPHARVVNVASKLGMLYNVPSQ 104
V + L R+V +S ++VP
Sbjct: 134 VAREAYRHLTEGGRIVLTSSNTSKDFSVPKH 164
Score = 38.7 bits (91), Expect = 0.001
Identities = 26/137 (18%), Positives = 33/137 (24%), Gaps = 43/137 (31%)
Query: 156 TLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQLLD 215
+ N V + L R+V +S ++VP L
Sbjct: 123 VFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSL---------------- 166
Query: 216 MMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGY 275
YS SK V SKD I VN V PG
Sbjct: 167 -----------------------YSGSKGAVDSFV----RIFSKDCGDKKITVNAVAPGG 199
Query: 276 VNTDLTEHKGVLTPEQG 292
TD+ G
Sbjct: 200 TVTDMFHEVSHHYIPNG 216
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 57.6 bits (140), Expect = 8e-10
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT------- 63
+ D+LD + + + G +LVNNAG R +F AETT
Sbjct: 61 LFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRV---STF---AETTDEAWSEE 114
Query: 64 LATNFFALVTVCHILFPLL--RPHARVVNVASKLG 96
L FF+++ P L R A +V V S L
Sbjct: 115 LQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLA 149
Score = 32.5 bits (75), Expect = 0.13
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
S ++ GV L +++ + + VN + G V +
Sbjct: 159 TSAARAGVKNLV----RSMAFEFAPKGVRVNGILIGLVESGQWR 198
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 56.5 bits (137), Expect = 8e-10
Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 14 HQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQ----RAETTLATNFF 69
+DI + SI K+++ + G +D +V+ G + + T+++
Sbjct: 39 VTVDITNIDSIKKMYEQV----GKVDAIVSATGSAT---FSPLTELTPEKNAVTISSKLG 91
Query: 70 ALVTVCHILFPLLRPHARVVNVASKLG 96
+ + + L +
Sbjct: 92 GQINLVLLGIDSLNDKGSFTLTTGIMM 118
Score = 39.6 bits (93), Expect = 5e-04
Identities = 13/156 (8%), Positives = 37/156 (23%), Gaps = 51/156 (32%)
Query: 132 GPLDKILDTAMDTAPGSFGQ----RAETTLATNFFALVTVCHILFPLLRPHARVVNVASK 187
G +D I+ + + T+++ + + + L
Sbjct: 57 GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGI 116
Query: 188 LGMLYNVPSQELRQTLFNESLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGV 246
+ E + + +++ V
Sbjct: 117 MM-----------------------------------------EDPIVQGASAAMANGAV 135
Query: 247 AKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
+F + + + + R I +N V P + +
Sbjct: 136 T--AFAK--SAAIEMPR-GIRINTVSPNVLEESWDK 166
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 56.8 bits (138), Expect = 9e-10
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
R D+ D+ L + + G LDLLV+ G + G+ E LA +
Sbjct: 44 ARALPADLADELEAKALLE----EAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLL 99
Query: 70 ALVTVCHILFPLLRPHARVVNVASKLG 96
V + AR V +
Sbjct: 100 TAAFVLKHA--RFQKGARAVFFGAYPR 124
Score = 42.5 bits (101), Expect = 5e-05
Identities = 27/170 (15%), Positives = 43/170 (25%), Gaps = 57/170 (33%)
Query: 132 GPLDKILDTAMDTAPGSFGQ----RAETTLATNFFALVTVCHILFPLLRPHARVVNVASK 187
GPLD ++ S + E LA + V + AR V +
Sbjct: 65 GPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA--RFQKGARAVFFGAY 122
Query: 188 LGMLYNVPSQELRQTLFNESLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGV 246
+ P F+ Y+ +K +
Sbjct: 123 PRYV-----------------------------------------QVPGFAAYAAAKGAL 141
Query: 247 AKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH-----KGVLTPEQ 291
K+ R + + V V T L KG L+PE+
Sbjct: 142 EAYL----EAARKELLREGVHLVLVRLPAVATGLWAPLGGPPKGALSPEE 187
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 57.7 bits (140), Expect = 9e-10
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA 60
+ + + + D + + GGLD+L+ N +
Sbjct: 70 SHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHIT------NTSLNLF 123
Query: 61 ETTLA-------TNFFALVTVCHILFPLL-RPHARVVNVASKLG 96
+ NF + V + P+L + + +V V+S G
Sbjct: 124 HDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG 167
Score = 35.3 bits (82), Expect = 0.018
Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 45/132 (34%)
Query: 154 ETTLATNFFALVTVCHILFPLL-RPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQ 212
++ NF + V + P+L + + +V V+S G +
Sbjct: 131 RKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV--------------------- 169
Query: 213 LLDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPV 271
+P + YS SK + S + ++ +
Sbjct: 170 --------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRV--NVSITLC 207
Query: 272 HPGYVNTDLTEH 283
G ++T+
Sbjct: 208 VLGLIDTETAMK 219
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 57.3 bits (139), Expect = 9e-10
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 5 KNNNNNVRFHQLDI-LDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT 63
N N+ FH D+ + + KL I Q +D+L+N AGI D + E T
Sbjct: 51 INPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDD-------HQIERT 103
Query: 64 LATNFFALVTVCHILFPLLRPH-----ARVVNVASKLGMLYNVPSQ 104
+A NF LV + + N+ S G +
Sbjct: 104 IAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTG-FNAIHQV 148
Score = 29.5 bits (67), Expect = 1.1
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
YS SK V +SF +L+K + ++PG T L + ++ + +
Sbjct: 151 YSASKAAV--VSFTN--SLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL 206
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 57.2 bits (139), Expect = 1e-09
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFFALVT 73
+ D D +I + + GGLD+LVN+AGI+ + +A NF A
Sbjct: 87 RADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFV 146
Query: 74 VCHILFPLLRPHARVVNVASKLGMLYNVPSQ 104
L R++ + S L L P
Sbjct: 147 AIRSASRHLGDGGRIITIGSNLAELVPWPGI 177
Score = 40.6 bits (96), Expect = 3e-04
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 232 AGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE 290
WP S YS SK +A L+ L++D I VN VHPG +TD+
Sbjct: 172 VPWPGISLYSASKAALAGLT----KGLARDLGPRGITVNIVHPGSTDTDMN---PADGDH 224
Query: 291 QGKIRQKI 298
R++I
Sbjct: 225 AEAQRERI 232
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 57.3 bits (139), Expect = 1e-09
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLA---- 65
LD+ D I + D+ ++G +D+LVNNAG G ETT
Sbjct: 52 RAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGR------TQVGAFEETTERELRD 105
Query: 66 ---TNFFALVTVCHILFPLLRP--HARVVNVASKLG 96
+ F + L P +R VVN++S G
Sbjct: 106 LFELHVFGPARLTRALLPQMRERGSGSVVNISSFGG 141
Score = 26.8 bits (60), Expect = 8.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 159 TNFFALVTVCHILFPLLRP--HARVVNVASKLG 189
+ F + L P +R VVN++S G
Sbjct: 109 LHVFGPARLTRALLPQMRERGSGSVVNISSFGG 141
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 57.2 bits (139), Expect = 1e-09
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT-------LATN 67
+ ++ I ++ ++ G LD++ +N+G+ + T N
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHV------KDVTPEEFDRVFTIN 138
Query: 68 FFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQ 104
V + L R++ + S G VP
Sbjct: 139 TRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKH 175
Score = 39.1 bits (92), Expect = 0.001
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
P+ + YS SK + + ++ D I VN V PG + TD+
Sbjct: 171 AVPKHAVYSGSKGAIETFA----RCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPN 226
Query: 292 GK 293
G+
Sbjct: 227 GE 228
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 56.8 bits (138), Expect = 1e-09
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNF 68
V +D+ + + + +++ GG D+LVNNAG + +
Sbjct: 58 RVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLV 117
Query: 69 FALVTVCHILFPLLRP--HARVVNVASKLG-------MLYNV 101
A V + L P +R +++ AS +YNV
Sbjct: 118 MAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNV 159
Score = 34.8 bits (81), Expect = 0.021
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y+V+K + S TL+ + + +I VN ++PG + T
Sbjct: 157 YNVTKAALMMFS----KTLATEVIKDNIRVNCINPGLILTPDWI 196
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 56.4 bits (137), Expect = 2e-09
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD-----TAPGSFGQRAETTLATNFF 69
Q D+ D +++ +L + GG+D+LVNNAGI T F + +A N
Sbjct: 83 QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVF----DRVIAVNLK 138
Query: 70 ALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQ 104
LR R++N+++ L + PS
Sbjct: 139 GTFNTLREAAQRLRVGGRIINMSTSQVGLLH-PSY 172
Score = 37.1 bits (87), Expect = 0.004
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
Y+ +K GV ++ LSK+ R DI VN V PG TDL + E
Sbjct: 175 YAAAKAGVEAMT----HVLSKELRGRDITVNAVAPGPTATDLF--LEGKSDEV 221
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 55.6 bits (135), Expect = 3e-09
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE--TTLATN 67
N+ QLD+ ++++I ++ + + +D+LVNNAG+ P + T + TN
Sbjct: 47 NLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTN 106
Query: 68 FFALVTVCHILFPLL--RPHARVVNVAS 93
LV + + P + R H ++N+ S
Sbjct: 107 NKGLVYMTRAVLPGMVERNHGHIINIGS 134
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 55.2 bits (134), Expect = 4e-09
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFA 70
L + +L I + LD +++NAG+ D P ++ + N A
Sbjct: 70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCP--MSEQNPQVWQDVMQVNVNA 127
Query: 71 LVTVCHILFPLLR--PHARVVNVASKLG 96
+ L PLL +V +S +G
Sbjct: 128 TFMLTQALLPLLLKSDAGSLVFTSSSVG 155
Score = 29.8 bits (68), Expect = 0.95
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 232 AGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
A W +Y+ SK + L+ + + + VN ++PG T +
Sbjct: 160 ANWG--AYAASKFATEGMM----QVLADE-YQQRLRVNCINPGGTRTAMRA 203
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 54.9 bits (133), Expect = 7e-09
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 4 CKNNNNNVRFH--QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA- 60
CK+ + D+ ++ I + I++QH G+D+ +NNAG+ A
Sbjct: 76 CKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGL----ARPDTLLSGS 131
Query: 61 ----ETTLATNFFALVTVCHILFPLLR----PHARVVNVAS 93
+ N AL + ++ ++N+ S
Sbjct: 132 TSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 172
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 54.2 bits (131), Expect = 7e-09
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 34 QHGGLDLLVNNAGIYR--DTAPGSFGQRAETTLATNFFALVTVCHILFPLLRPHARVVNV 91
Q +D + AG + + F + A+ + + ++ + L+P +
Sbjct: 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLT 128
Query: 92 ASKLGM 97
+ M
Sbjct: 129 GAAAAM 134
Score = 41.5 bits (98), Expect = 1e-04
Identities = 13/129 (10%), Positives = 29/129 (22%), Gaps = 44/129 (34%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQL 213
+ + + ++ + L+P + + M
Sbjct: 98 DLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM----------------------- 134
Query: 214 LDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVH 272
P Y ++K V L+ A S V +
Sbjct: 135 ------------------GPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDN--SAVLTIM 174
Query: 273 PGYVNTDLT 281
P ++T +
Sbjct: 175 PVTLDTPMN 183
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 54.1 bits (131), Expect = 1e-08
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 15 QLDILDQSSIHKLHDDI------QTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT----- 63
++ + L+ + +T D+L+NNAGI ETT
Sbjct: 63 GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFI------EETTEQFFD 116
Query: 64 --LATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYN 100
++ N A + LR ++R++N++S +
Sbjct: 117 RMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL 155
Score = 36.7 bits (86), Expect = 0.005
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 48/139 (34%)
Query: 156 TLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQLLD 215
++ N A + LR ++R++N++S
Sbjct: 118 MVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT-------------------------- 151
Query: 216 MMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPG 274
P+F YS++K + ++ TL+K I VN + PG
Sbjct: 152 ---------------RISLPDFIAYSMTKGAINTMT----FTLAKQLGARGITVNAILPG 192
Query: 275 YVNTDLTEHKGVLTPEQGK 293
+V TD+ +L+ K
Sbjct: 193 FVKTDMNA--ELLSDPMMK 209
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 53.7 bits (130), Expect = 2e-08
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFFALVT 73
D+ ++ +L + LD+LVNNAG A S+ E + N ++ +
Sbjct: 83 PADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFS 142
Query: 74 VCHILFPLLRPHA------RVVNVASKLGM 97
L PLLR A RV+N+ S G+
Sbjct: 143 CIQQLLPLLRRSASAENPARVINIGSVAGI 172
Score = 34.5 bits (80), Expect = 0.032
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 233 GWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
G ++Y SK + +LS + L + I VN + PG + +T H
Sbjct: 176 GEQAYAYGPSKAALHQLSRMLAKELVGEH----INVNVIAPGRFPSRMTRH 222
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 53.4 bits (129), Expect = 2e-08
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE--T 62
+ N V QLDI I +++ + +D+LVNNAG + +
Sbjct: 83 EFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQD 142
Query: 63 TLATNFFALVTVCHILFPLL--RPHARVVNVAS 93
TN AL+ + + P+ + +VN+ S
Sbjct: 143 VFDTNVTALINITQAVLPIFQAKNSGDIVNLGS 175
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 52.9 bits (128), Expect = 2e-08
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
N++F + D+ Q I + D ++ D + NAGI GS L
Sbjct: 45 NLKFIKADLTKQQDITNVLD--IIKNVSFDGIFLNAGILIK---GSIFDIDIESIKKVLD 99
Query: 66 TNFFALVTVCHILFPLLRPHARVVNVASKLGM 97
N ++ + L L+ A +V S
Sbjct: 100 LNVWSSIYFIKGLENNLKVGASIVFNGSDQCF 131
Score = 34.8 bits (81), Expect = 0.023
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 233 GWPE-FSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
P F+Y++SK +A+++ +L+ D + I VN V PG V+TDL
Sbjct: 133 AKPNSFAYTLSKGAIAQMT----KSLALDLAKYQIRVNTVCPGTVDTDLYR 179
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 52.9 bits (128), Expect = 2e-08
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-----ETTL 64
V + DI+ + D ++ +D LV+ A + A + + L
Sbjct: 49 GVEPIESDIVKEVLEEGGVDKLK-NLDHVDTLVHAAAV----ARDTTIEAGSVAEWHAHL 103
Query: 65 ATNFFALVTVCHILFPLLRP-HARVVNVAS 93
N + L P LR V+ + S
Sbjct: 104 DLNVIVPAELSRQLLPALRAASGCVIYINS 133
Score = 33.7 bits (78), Expect = 0.046
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+ SK + L+ K++ I V+ V PG NT + + ++ + R +I
Sbjct: 146 YAASKHALRGLA----DAFRKEEANNGIRVSTVSPGPTNTPMLQG--LMDSQGTNFRPEI 199
Query: 299 YL 300
Y+
Sbjct: 200 YI 201
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 53.4 bits (129), Expect = 2e-08
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 8 NNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-----ET 62
NV D+ + ++ + G LD+LVNNAG + G +
Sbjct: 57 EQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDA 116
Query: 63 TLATNFFALVTVCHILFPLLRPHA-RVVNVASKLGMLYNVPSQ 104
TL N +++ + P L +VN++S L+ P
Sbjct: 117 TLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDF 159
Score = 36.0 bits (84), Expect = 0.011
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
P+F YS++K + + + + D + I VN + PG V T G+
Sbjct: 155 ATPDFPYYSIAKAAIDQYT----RNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETS 210
Query: 292 GKIRQKIYLLKRT 304
K + +K
Sbjct: 211 KKFYSTMATMKEC 223
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 53.4 bits (129), Expect = 2e-08
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 9 NNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE---TTLA 65
+ D+ + S + + + G +D+LVNNAG + Q E T
Sbjct: 78 EKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFK 137
Query: 66 TNFFALVTVCHILFP-LLRPHARVVNVASKLGMLYNVPSQ 104
NF A++ + L++ +VNV+S +
Sbjct: 138 LNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGY 177
Score = 32.6 bits (75), Expect = 0.13
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
+ Y+ +K + + + + D + + VN V PG V T G+
Sbjct: 173 AHSGYPYYACAKAALDQYT----RCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETAS 228
Query: 292 GKIRQKIYLLKRT 304
K+ I K
Sbjct: 229 DKLYSFIGSRKEC 241
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 52.5 bits (127), Expect = 2e-08
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-----ETTL 64
D+ ++ + ++ G L LVNNAG+ L
Sbjct: 51 GALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGV----GVMKPVHELTLEEWRLVL 106
Query: 65 ATNFFALVTVCHILFPLL--RPHARVVNVAS 93
TN P L R +VNV S
Sbjct: 107 DTNLTGAFLGIRHAVPALLRRGGGTIVNVGS 137
Score = 29.8 bits (68), Expect = 0.90
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH--KGV--LTPE 290
Y+ SK G+ L+ D R ++ V V PG V+T + L PE
Sbjct: 150 YNASKFGLLGLA----GAAMLDLREANVRVVNVLPGSVDTGFAGNTPGQAWKLKPE 201
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 52.9 bits (128), Expect = 3e-08
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+++ + +V ++ D+ SI +L + + + G+D+LVNNAGI RD
Sbjct: 65 KEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDG 115
Score = 28.3 bits (64), Expect = 2.9
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIR 295
Y +K G+ S L+++ R +I VN + PG++ + +T+ L +Q I
Sbjct: 173 YCAAKAGLIGFS----KALAQEIASR--NITVNCIAPGFIKSAMTD---KLNEKQKEAIM 223
Query: 296 QKI 298
I
Sbjct: 224 AMI 226
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 52.9 bits (128), Expect = 3e-08
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
N+ + D+ D ++ K + + +D+LVNNA
Sbjct: 43 AKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKG 89
Score = 29.8 bits (68), Expect = 0.90
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 239 YSVSKLGVAKLSFIQHAT---LSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y+ +K G+ L+ HA L PD++VN + PG++N +
Sbjct: 146 YASAKGGIVALT---HALAMSLG-----PDVLVNCIAPGWINVTEQQ 184
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 52.9 bits (128), Expect = 3e-08
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD-----TAPGSFGQRAETTLATNFF 69
Q D+ ++ + KL D + + G +D+ +N G T+ F + N
Sbjct: 69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEF----DAMDTINNK 124
Query: 70 ALVTVCHILFPLLRPHARVVNVASKLGMLYN 100
+ P+ ++ +A+ L Y
Sbjct: 125 VAYFFIKQAAKHMNPNGHIITIATSLLAAYT 155
Score = 39.0 bits (92), Expect = 0.001
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 232 AGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE 290
A +S Y+ +K V + SK+ + I VN + PG ++T G T E
Sbjct: 153 AYTGFYSTYAGNKAPVEHYT----RAASKELMKQQISVNAIAPGPMDTSFFY--GQETKE 206
Query: 291 QGKIRQKIYLLKR 303
+ + +
Sbjct: 207 STAFHKSQAMGNQ 219
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 52.6 bits (127), Expect = 3e-08
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLATNFF 69
LDI D + DI ++G +D+LVN A ++ D + + N
Sbjct: 60 EPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVI 119
Query: 70 ALVTVCHILFPLL--RPHARVVNVAS 93
A + + ++ + + + NVAS
Sbjct: 120 AQYGILKTVTEIMKVQKNGYIFNVAS 145
Score = 36.0 bits (84), Expect = 0.008
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKG-------VLTPE 290
Y +K + L+ +L ++ I V + PG+VNTD+ + G ++ P+
Sbjct: 158 YGSTKFALLGLA----ESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPD 212
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 52.5 bits (127), Expect = 3e-08
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA---- 60
V +LD+ D+ + GGLD+LVNNAGI + A
Sbjct: 52 TAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGI----MLLGPVEDADTTD 107
Query: 61 -ETTLATNFFALVTVCHILFP-LLRPHARVVNVAS 93
+ TN L+ + P LLR VV ++S
Sbjct: 108 WTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSS 142
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 52.6 bits (127), Expect = 3e-08
Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE---TTLATN 67
+ ++ +I D S+ + + G +D+ V NAG+ P + ++ +
Sbjct: 85 SKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVD 144
Query: 68 FFALVTVCHILFPLLRP--HARVVNVASKLGMLYNVP 102
+ H + + + ++ +S G + N+P
Sbjct: 145 LNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIP 181
Score = 31.4 bits (72), Expect = 0.34
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK-IRQ 296
Y+ +K L+ +L+ + P VN + PGY++TD+T+ + + Q
Sbjct: 186 PYNTAKAACTHLA----KSLAIE-WAPFARVNTISPGYIDTDITD---FASKDMKAKWWQ 237
Query: 297 KI 298
Sbjct: 238 LT 239
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 51.8 bits (125), Expect = 6e-08
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE--TTLATN 67
V LD+ D++++ D++ + L L+NNAG+ T P + T + TN
Sbjct: 70 RVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTN 129
Query: 68 FFALVTVCHILFPLLRPHAR---VVNVAS 93
L+ +L P L H +VN+ S
Sbjct: 130 IKGLLYSTRLLLPRLIAHGAGASIVNLGS 158
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 52.5 bits (126), Expect = 6e-08
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFG-QRAETTLATNFFALVT 73
+D+ D+ I + + GG+D+LVNNA T +R + + N
Sbjct: 107 IVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYL 166
Query: 74 VCHILFPLLR--PHARVVNVASKLGMLYNVP 102
P L+ A ++N++ L +
Sbjct: 167 ASKACIPYLKKSKVAHILNISPPLNLNPVWF 197
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 51.8 bits (125), Expect = 7e-08
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ + + V Q D+ D++ L + GG+D++ NAG++ D
Sbjct: 52 ADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDA 102
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
Y +K T + + I VN + PG + T+ E + +
Sbjct: 161 YGATKAAQLGFM----RTAAIELAPHKITVNAIMPGNIMTEGLL---ENGEEYIASMARS 213
Query: 298 I 298
I
Sbjct: 214 I 214
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 51.8 bits (125), Expect = 7e-08
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-----ETTL 64
V D+ + ++ + Q G +D+LVNNAG A G+ G TL
Sbjct: 59 QVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTL 118
Query: 65 ATNFFALVTVCHILFP-LLRPHARVVNVAS 93
N A++ + + P L+ +VNV+S
Sbjct: 119 KLNLQAVIEMTKKVKPHLVASKGEIVNVSS 148
Score = 33.7 bits (78), Expect = 0.058
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
P+F Y+++K + + + + + D + I VN V PG V T T G+
Sbjct: 155 AQPDFLYYAIAKAALDQYT----RSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQAS 210
Query: 292 GKIRQKIYLLKRT 304
K + K
Sbjct: 211 QKFYNFMASHKEC 223
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 51.0 bits (123), Expect = 9e-08
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
K R L+I D SI +I+ ++ +D+LVNNAGI RD
Sbjct: 50 KEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDN 96
Score = 29.0 bits (66), Expect = 1.8
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIR 295
Y +K GV S +L+ + R +I VN V PG++ TD+T+ LT EQ I
Sbjct: 154 YCAAKAGVIGFS----KSLAYEVASR--NITVNVVAPGFIATDMTD---KLTDEQKSFIA 204
Query: 296 QKI 298
KI
Sbjct: 205 TKI 207
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 51.0 bits (123), Expect = 1e-07
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA 60
++ + V +H LD+ S+ + + + G +D++V NAG+ +
Sbjct: 44 HELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGL----GYFKRLEEL 99
Query: 61 -----ETTLATNFFALVTVCHILFPLLRPHAR--VVNVAS 93
+ N + L+ +V +
Sbjct: 100 SEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSD 139
Score = 31.0 bits (71), Expect = 0.39
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH-------KGVLTPE 290
Y +K L T + D+ + PG V+T KG L P+
Sbjct: 151 YVSTKWAARALV----RTFQIENP--DVRFFELRPGAVDTYFGGSKPGKPKEKGYLKPD 203
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 51.5 bits (124), Expect = 1e-07
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
VR D+ D + L ++ + LDLLVNNAG P + +A
Sbjct: 84 IVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVP--LEEVTFEQWNGIVA 141
Query: 66 TNFFALVTVCHILFPLLRPHA----RVVNVASKLGM 97
N F +++ R++N S
Sbjct: 142 ANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ 177
Score = 39.5 bits (93), Expect = 7e-04
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+ +K + L+ + + D R DI + G TD+T ++ + ++
Sbjct: 186 YTATKHAITGLT----KSTALDGRMHDIACGQIDIGNAATDMTAR---MSTGVLQANGEV 238
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 51.1 bits (123), Expect = 1e-07
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-----ETTL 64
N Q+D+ D+ + + +G D +VNNAG+ +
Sbjct: 60 NTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGM----MLLGQIDTQEANEWQRMF 115
Query: 65 ATNFFALVTVCHILFPLL--RPHARVVNVAS 93
N L+ + + R ++N++S
Sbjct: 116 DVNVLGLLNGMQAVLAPMKARNCGTIINISS 146
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 51.1 bits (123), Expect = 1e-07
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 15 QLDILDQSSIHKLHDDIQT-QHGGLDLLVNNAGIYRDTAPGSFGQRA--------ETTLA 65
D +S + L + + Q G LD+LVNNA T + + +
Sbjct: 60 VCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINN 119
Query: 66 TNFFALVTVCHILFPLL--RPHARVVNVASKLGMLY 99
L+ +V ++S + Y
Sbjct: 120 VGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY 155
Score = 36.4 bits (85), Expect = 0.007
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
Y V K KL+ + + RR + + PG V T+L +
Sbjct: 161 YGVGKAACDKLAA----DCAHELRRHGVSCVSLWPGIVQTELLKE 201
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 51.0 bits (123), Expect = 1e-07
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
+ QL + + +L + + + +G +D+LV+N + P
Sbjct: 46 ETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQP 88
Score = 31.4 bits (72), Expect = 0.30
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+ ++ G L+ LSK+ +I V + P Y++++ + + P +
Sbjct: 145 YTSARAGACTLA----NALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVA 200
Query: 299 YLLKRT 304
++ K T
Sbjct: 201 HVKKVT 206
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 51.0 bits (123), Expect = 1e-07
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
Q + +N + L++ + SI + I + GG+D+LVNNAGI RD
Sbjct: 47 QAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDN 97
Score = 29.0 bits (66), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
+ VN V PG++ TD+T+ L EQ ++
Sbjct: 178 VTVNTVAPGFIETDMTK---ALNDEQRTATLAQV 208
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 50.9 bits (123), Expect = 1e-07
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
V + D+ D+ ++ Q G +D+LVNNAGI ++ G +A
Sbjct: 53 KVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMA 112
Query: 66 TN----FFALVTVCHILFPLLRPHA--RVVNVASKLGM 97
N F C + P + +VN+AS +
Sbjct: 113 VNVRGIFL----GCRAVLPHMLLQGAGVIVNIASVASL 146
Score = 33.2 bits (77), Expect = 0.082
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
+P S Y+ SK V +L+ +++ D I N V PG + T +T+ +Q
Sbjct: 148 AFPGRSAYTTSKGAVLQLT----KSVAVDYAGSGIRCNAVCPGMIETPMTQW----RLDQ 199
Query: 292 GKIRQKI 298
++R ++
Sbjct: 200 PELRDQV 206
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 50.6 bits (122), Expect = 1e-07
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA--- 60
++ LD+ D+ S+ G +D+LVNNAG+ P S
Sbjct: 48 IRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGV----MPLSPLAAVKVD 103
Query: 61 --ETTLATNFFALVTVCHILFPLL--RPHARVVNVAS 93
E + N ++ + P++ + +++N+ S
Sbjct: 104 EWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGS 140
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 51.1 bits (123), Expect = 1e-07
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFG-QRAETTLATNFFALVT 73
DI D ++ Q GG+D+ VNNA + +R +
Sbjct: 71 VGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYA 130
Query: 74 VCHILFPLLR--PHARVVNVASKLGMLYNVPSQ 104
V P ++ + ++ ++ + +
Sbjct: 131 VSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRP 163
Score = 29.9 bits (68), Expect = 0.97
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 231 EAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPG-YVNTDLTEHKGVLT 288
E W + Y ++K G+ + ++++ R I N + P V T ++
Sbjct: 157 EPKWLRPTPYMMAKYGMTLCA----LGIAEELRDAGIASNTLWPRTTVATAAVQNLLGGD 212
Query: 289 PEQGKIRQ 296
+ R+
Sbjct: 213 EAMARSRK 220
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 50.6 bits (122), Expect = 1e-07
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE--TTLATNF 68
V +D+ + S+ + Q G +D+LV AGI + + N
Sbjct: 64 VSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINL 123
Query: 69 FALVTVCHILFPLLRP--HARVVNVASKLGMLYNVP 102
+ C + ++ +V + S G++ N P
Sbjct: 124 NGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRP 159
Score = 35.2 bits (82), Expect = 0.019
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQK 297
+Y+ SK GV + +L+ + I N V P Y+ T LT E+ ++
Sbjct: 164 AYNASKAGVHQYI----RSLAAEWAPHGIRANAVAPTYIETTLTRF----GMEKPELYDA 215
Query: 298 IYLLKRT 304
+ T
Sbjct: 216 W--IAGT 220
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 50.6 bits (122), Expect = 1e-07
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 17 DILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFALV 72
L + +L D +D +V+N I R +E +
Sbjct: 52 IALAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPI 111
Query: 73 TVCHILFPLLRP--HARVVNVASKLGMLYN 100
+ LR A V+ + S +G
Sbjct: 112 LLLQSAIAPLRAAGGASVIFITSSVGKKPL 141
Score = 34.0 bits (79), Expect = 0.043
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y ++ L + +K R I++ + P + N ++R+++
Sbjct: 147 YGPARAATVALV----ESAAKTLSRDGILLYAIGPNFFNNPTY-FPTSDWENNPELRERV 201
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 50.6 bits (122), Expect = 2e-07
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTA-----PGSFGQRAETTLATNFF 69
+ ++ + I ++ I G LD+ VNNA + + T+ N
Sbjct: 60 KANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHW----DWTMNINAK 115
Query: 70 ALVTVCHILFPLLRPHA--RVVNVASKLGMLYN 100
AL+ L+ + +V+++S + Y
Sbjct: 116 ALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYL 148
Score = 35.2 bits (82), Expect = 0.018
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
++ VSK + L+ L+ + IIVN V G ++TD +H
Sbjct: 147 YLENYTTVGVSKAALEALT----RYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLL 202
Query: 292 GKIRQKIYLLKR 303
RQ R
Sbjct: 203 EDARQNT-PAGR 213
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 50.6 bits (122), Expect = 2e-07
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT-------LA 65
D+ + + L + G LD++VNNAG+ G ETT L
Sbjct: 70 HLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISR---GRI---TETTDADWSLSLG 123
Query: 66 TNFFALVTVCHILFPLLRP--HARVVNVASKLGM 97
N A +C PL+ +VNVAS G+
Sbjct: 124 VNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGL 157
Score = 33.7 bits (78), Expect = 0.050
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y ++K +A L+ + D I +N V P VNT +
Sbjct: 166 YCLTKAALASLT----QCMGMDHAPQGIRINAVCPNEVNTPMLR 205
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 50.6 bits (122), Expect = 2e-07
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Query: 6 NNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLA 65
+ ++F Q D D+ KL D + G + LVNNAGI + + ETT A
Sbjct: 51 GTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSV------EETTTA 104
Query: 66 TNFFALVTV--------CHILFPLLRPH---ARVVNVASKLGM 97
+ L+ V + ++ A ++N++S G
Sbjct: 105 -EWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF 146
Score = 37.9 bits (89), Expect = 0.002
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
G P Y+ SK V +S + A L + D+ VN VHPGY+ T L + + E+
Sbjct: 148 GDPSLGAYNASKGAVRIMS--KSAALDCALKDYDVRVNTVHPGYIKTPLVD--DLPGAEE 203
Query: 292 GKIRQKIYLLKR 303
++ +
Sbjct: 204 AMSQRTKTPMGH 215
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 50.4 bits (121), Expect = 2e-07
Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 34 QHGGLDLLVNNAGIYRDTAP--GSFGQRAETTLATNFFALVTVCHILFPLLRPHARVVNV 91
+D ++ AG + S + + + + H+ L+ +
Sbjct: 73 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLA 132
Query: 92 ASKLGM 97
+K +
Sbjct: 133 GAKAAL 138
Score = 42.3 bits (100), Expect = 7e-05
Identities = 13/132 (9%), Positives = 29/132 (21%), Gaps = 48/132 (36%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQL 213
+ + + H+ L+ + +K +
Sbjct: 102 DLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL----------------------- 138
Query: 214 LDMMTDYVQLAKEGKDKEAGWPEFS-YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNP 270
G P Y ++K V +L +L+
Sbjct: 139 ------------------DGTPGMIGYGMAKGAVHQLC----QSLAGKNSGMPSGAAAIA 176
Query: 271 VHPGYVNTDLTE 282
V P ++T +
Sbjct: 177 VLPVTLDTPMNR 188
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 50.7 bits (122), Expect = 2e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
NV +LD+ D S + G LD++ NAGI+ +
Sbjct: 92 NVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEA 133
Score = 28.7 bits (65), Expect = 2.2
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
Y SK T + + + VN + PG + T+ + E + +
Sbjct: 192 YGASKAAQLGFM----RTAAIELAPRGVTVNAILPGNILTEGLV---DMGEEYISGMARS 244
Query: 298 I 298
I
Sbjct: 245 I 245
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 50.3 bits (121), Expect = 2e-07
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE--TTLATN 67
+ D+ D S+ L + G +D+L NNAG P A+ + TN
Sbjct: 75 DALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTN 134
Query: 68 FFALVTVCHILFPLLRPHA----RVVNVASKLGM 97
F +++ R++N S
Sbjct: 135 LTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT 168
Score = 41.1 bits (97), Expect = 2e-04
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+ +K + L+ + S D R DI + G +T + + + + I
Sbjct: 177 YTATKHAITGLT----KSTSLDGRVHDIACGQIDIGNADTPMAQK---MKAGVPQADLSI 229
Query: 299 YL 300
+
Sbjct: 230 KV 231
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 50.2 bits (121), Expect = 2e-07
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA 60
+ + R+ LD+ + ++ + + G +D LVNNAGI
Sbjct: 43 AATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFL------E 96
Query: 61 ETTLATNFFALVTV--------CHILFPLLRPH--ARVVNVASKLGM 97
++ F +V + + P ++ +VN++S G+
Sbjct: 97 TESVE-RFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL 142
Score = 33.6 bits (78), Expect = 0.061
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQK 297
SY SK GV LS + + I VN VHPG T +T QG+
Sbjct: 150 SYGASKWGVRGLS----KLAAVELGTDRIRVNSVHPGMTYTPMTAE---TGIRQGEGNYP 202
Query: 298 IYLLKR 303
+ R
Sbjct: 203 NTPMGR 208
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 50.2 bits (121), Expect = 2e-07
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+++ ++++L + SI+K ++I G+D+LVNNAGI RD
Sbjct: 49 EEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDK 99
Score = 29.0 bits (66), Expect = 1.9
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIR 295
YS +K G+ + +L+K+ R +++VN V PG++ TD+T VL+ E K +
Sbjct: 157 YSTTKAGLIGFT----KSLAKELAPR--NVLVNAVAPGFIETDMTA---VLSEEIKQKYK 207
Query: 296 QKI 298
++I
Sbjct: 208 EQI 210
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 50.2 bits (121), Expect = 2e-07
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA 60
+ + + R+ LD+ + D T GGL +LVNNAGI
Sbjct: 45 KAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTI------E 98
Query: 61 ETTLATNFFALVTV--------CHILFPLLRPHAR--VVNVASKLGM 97
+ L + ++ V + ++ R ++N++S G+
Sbjct: 99 DYALT-EWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL 144
Score = 33.6 bits (78), Expect = 0.049
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y+ +K V L+ + + + I VN +HPG V T +T+
Sbjct: 152 GYTATKFAVRGLT----KSTALELGPSGIRVNSIHPGLVKTPMTD 192
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 50.0 bits (120), Expect = 3e-07
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSF-GQRAETTLATNFF 69
V H D+ S I + + + GG D+LVNNAG+ F ++ + +A N
Sbjct: 78 VLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLS 137
Query: 70 ALVTVCHILFPLLRPHA--RVVNVASKLGM 97
+ P ++ R++N+AS G+
Sbjct: 138 SSFHTIRGAIPPMKKKGWGRIINIASAHGL 167
Score = 32.2 bits (74), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y +K G+ L+ T++ + + VN + PGYV T L E
Sbjct: 176 YVAAKHGIMGLT----KTVALEVAESGVTVNSICPGYVLTPLVE 215
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium
loti} PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 49.8 bits (120), Expect = 3e-07
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ + R DI D S+ L +IQ GG+D+LVNNA I
Sbjct: 44 KAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFV 94
Score = 30.5 bits (70), Expect = 0.61
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQG-KIRQK 297
Y +K GV + L+ + + +I N V PG + +D + + +
Sbjct: 153 YVAAKGGVIGFT----RALATELGKYNITANAVTPGLIESDGVK---ASPHNEAFGFVEM 205
Query: 298 IYLLKR 303
+ +K
Sbjct: 206 LQAMKG 211
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 49.8 bits (120), Expect = 3e-07
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAG-IYRDTAPGSFG-QRAETTLATNFFALV 72
+ D+ + + + + G + LV+ AG + L N +L
Sbjct: 64 KADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF 123
Query: 73 TVCHILFPLLRPHARVVNVASKLGMLYNVPSQ 104
P + +V +S+ G P
Sbjct: 124 LTAKTALPKMAKGGAIVTFSSQAGRDGGGPGA 155
Score = 32.5 bits (75), Expect = 0.15
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTE 282
Y+ SK V + L+K+ + I VN V PG ++T +
Sbjct: 158 YATSKGAVMTFT----RGLAKEVGPK---IRVNAVCPGMISTTFHD 196
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 49.8 bits (120), Expect = 3e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+D+ D + + ++ + + LD LVN AGI R
Sbjct: 47 PFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMG 88
Score = 27.9 bits (63), Expect = 3.5
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y SK + L+ ++ + + N V PG +TD+ L Q+I
Sbjct: 146 YGASKAALKSLA----LSVGLELAGSGVRCNVVSPGSTDTDMQR---TLWVSDDAEEQRI 198
Query: 299 YLLKRT 304
Sbjct: 199 RGFGEQ 204
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 49.9 bits (120), Expect = 3e-07
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
H D+ D + I L + + GG+D+LVNNAGI F + + +A N
Sbjct: 53 AVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLS 112
Query: 70 ALVTVCHILFPLLRP--HARVVNVASKLG 96
A+ + P +R R++N+AS G
Sbjct: 113 AVFHGTRLALPGMRARNWGRIINIASVHG 141
Score = 30.6 bits (70), Expect = 0.60
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y +K GV L+ + + ++ N + PG+V T L +
Sbjct: 151 YVAAKHGVVGLT----KVVGLETATSNVTCNAICPGWVLTPLVQ 190
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 49.8 bits (120), Expect = 3e-07
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
D+ D+ +I + + +D+L+NNAGI + + TN
Sbjct: 60 AHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLT 119
Query: 70 ALVTVCHILFPLLRPHA---RVVNVASKLGML--YNVPS 103
+ V + +++N+ S V
Sbjct: 120 SAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAP 158
Score = 29.0 bits (66), Expect = 1.8
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 238 SYSVSKLGVAKLSFIQHAT--LSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y+ +K G+ L T ++ + + +I N + PGY+ TD+
Sbjct: 158 PYTAAKGGIKML------TCSMAAEWAQFNIQTNAIGPGYILTDMNT 198
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 49.8 bits (120), Expect = 3e-07
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
K R L++ D +++ L + + G L++LVNNAGI +D
Sbjct: 72 FKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQ 119
Score = 29.0 bits (66), Expect = 1.7
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
I VN V PG+++TD+T+ L EQ ++ +I
Sbjct: 200 ITVNCVAPGFIDTDMTK---GLPQEQQTALKTQI 230
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 49.8 bits (120), Expect = 3e-07
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
+ D+ + + KL + ++ + G LD +VN AGI R F + N F
Sbjct: 73 TMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLF 132
Query: 70 ALVTVCHILFP--LLRPHARVVNVASKLGMLYNVPSQ 104
VC F + ++N+ S +P+
Sbjct: 133 GTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNI 169
Score = 28.6 bits (65), Expect = 2.2
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 238 SYSVSKLGVAKLSFIQHAT--LSKDKRRPDIIVNPVHPGYVNTDLTE 282
+Y+ SK GVA L T L+K+ R I VN + PG+ T +TE
Sbjct: 171 AYAASKGGVASL------TKALAKEWGRYGIRVNVIAPGWYRTKMTE 211
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 49.5 bits (119), Expect = 3e-07
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFG-QRAETTLATNFFALVT 73
+ DI ++ + GG+D+LVNNA +R + N
Sbjct: 68 KCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFV 127
Query: 74 VCHILFPLLRP--HARVVNVASKLGMLYN 100
P L + ++ +A +
Sbjct: 128 CAQACLPHLLQAPNPHILTLAPPPSLNPA 156
Score = 30.6 bits (70), Expect = 0.48
Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPG-YVNTDLTEHKGVLTPEQGKIRQ 296
Y+++K+G++ ++ L+ + + +N + P + TD + + R+
Sbjct: 164 YTLAKMGMSLVTL----GLAAEFGPQGVAINALWPRTVIATDAINM--LPGVDAAACRR 216
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 49.5 bits (119), Expect = 4e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
+R+ DI ++ + D + HG L +V+ AG + P
Sbjct: 65 IRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGP 107
Score = 31.8 bits (73), Expect = 0.22
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y V+K V L + + + VN + PG + TDL
Sbjct: 164 YGVTKSAVDHLM----QLAADELGASWVRVNSIRPGLIRTDLVA 203
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 49.4 bits (119), Expect = 4e-07
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
K NV + D+ + + + G +D+LVNNAGI RDT
Sbjct: 50 FKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDT 97
Score = 29.4 bits (67), Expect = 1.4
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
Y+ SK G+ + +++K+ I N V PG + TD+T+ VL +
Sbjct: 155 YAASKAGLIGFT----KSIAKEFAAKGIYCNAVAPGIIKTDMTD---VLPDKVKEMYLNN 207
Query: 298 I 298
I
Sbjct: 208 I 208
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 49.4 bits (119), Expect = 4e-07
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
K + Q ++ D + + ++ +Q G LD+LVNNAGI RD
Sbjct: 49 IKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDN 96
Score = 29.0 bits (66), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
I VN V PG++ +D+T+ L+ E ++ +I
Sbjct: 177 ITVNAVAPGFIVSDMTD---ALSDELKEQMLTQI 207
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 49.5 bits (119), Expect = 4e-07
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+KV K + +Q D+ + + K I G + L+ NAG+
Sbjct: 56 EKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVK 106
Score = 33.3 bits (77), Expect = 0.082
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE-QGKIRQ 296
Y+ SK + L L+ + I VN + PGYVNTD T + + +
Sbjct: 171 FYNSSKAACSNLV----KGLAAEWASAGIRVNALSPGYVNTDQTA---HMDKKIRDHQAS 223
Query: 297 KI 298
I
Sbjct: 224 NI 225
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 49.5 bits (119), Expect = 4e-07
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++ DI + ++ + + G +D LVNNAG++
Sbjct: 69 DIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAK 110
Score = 33.7 bits (78), Expect = 0.050
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 232 AGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
G P S++K G+ ++ +L+ + R + VN V PG + T +
Sbjct: 163 VGMPSALASLTKGGLNAVT----RSLAMEFSRSGVRVNAVSPGVIKTPMHP 209
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 49.0 bits (118), Expect = 4e-07
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
V ++L+ + L GGLD LVNNAGI RDT
Sbjct: 54 VAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDT 94
Score = 29.0 bits (66), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
I VN V PG++ T++TE L E ++I
Sbjct: 175 ITVNAVAPGFIETEMTE---RLPQEVKEAYLKQI 205
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 49.1 bits (118), Expect = 4e-07
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ DI D + + + +I+ HG +++L+ NAG+ +D
Sbjct: 65 KCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQ 101
Score = 29.1 bits (66), Expect = 1.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
I N V PG+V+TD+T+ VLT EQ I ++
Sbjct: 182 ITFNVVAPGFVDTDMTK---VLTDEQRANIVSQV 212
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 49.0 bits (118), Expect = 5e-07
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
K ++ + D+ + + + G +D+LVNNAG+ +D
Sbjct: 49 IKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDN 96
Score = 29.0 bits (66), Expect = 1.6
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
I VN + PG++ TD+T+ VL ++ + I
Sbjct: 177 ITVNAIAPGFIATDMTD---VLDENIKAEMLKLI 207
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 49.1 bits (118), Expect = 5e-07
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYR-----DTAPGSFGQRAETTLA 65
V +D+ + + +L GGLD+LVNNAGI DT P F + T+A
Sbjct: 72 VHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLF----DATIA 127
Query: 66 TNFFALVTVCHILFPLLRPHA---RVVNVASKLGML 98
N A + + + ++ VAS +
Sbjct: 128 VNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA 163
Score = 31.4 bits (72), Expect = 0.34
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
+Y SK G+ + L+++ I N V P V T++ +
Sbjct: 170 AYCTSKAGLVMAT----KVLARELGPHGIRANSVCPTVVLTEMGQR 211
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 49.1 bits (118), Expect = 5e-07
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ + ++ D S + D ++ + G +D+LVNNAGI RD
Sbjct: 64 DFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDV 105
Score = 30.6 bits (70), Expect = 0.55
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
+ VN V PGY+ TD+ + + P+ KI I
Sbjct: 186 VTVNTVSPGYIGTDMVK---AIRPDVLEKIVATI 216
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 49.0 bits (118), Expect = 5e-07
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGG-LDLLVNNAGIYRDTAPGSFGQRAETT----- 63
V D + KL + + GG LD+L+NN G R + T
Sbjct: 64 QVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPT------LDYTAEDFS 117
Query: 64 --LATNFFALVTVCHILFPLLRP--HARVVNVASKLGMLYNVPSQ 104
++TN + + + PLL+ ++ ++S G++
Sbjct: 118 FHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA-SVG 161
Score = 31.3 bits (72), Expect = 0.28
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
YS +K + +L+ L+ + I N V P + T L E + + + ++ +
Sbjct: 164 YSATKGALNQLA----RNLACEWASDGIRANAVAPAVIATPLAEA---VYDD--EFKKVV 214
Query: 299 YLLKRT 304
+ R
Sbjct: 215 --ISRK 218
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 49.2 bits (118), Expect = 5e-07
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSF-GQRAETTLATNFF 69
V + D+ ++ L D+ Q G +D+LVNNAGI F ++ + LA N
Sbjct: 57 VLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLS 116
Query: 70 ALVTVCHILFPLLRP--HARVVNVASKLGM 97
A+ P ++ R++N+AS G+
Sbjct: 117 AVFHGTAAALPHMKKQGFGRIINIASAHGL 146
Score = 32.2 bits (74), Expect = 0.18
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIR 295
Y +K GV + + + I N + PG+V T L E +
Sbjct: 155 YVAAKHGVVGFT----KVTALETAGQGITANAICPGWVRTPLVE---KQISALAEKN 204
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 49.1 bits (118), Expect = 5e-07
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ + + +D+ D S + + + G +D+L+NNAGI RD
Sbjct: 76 DFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDA 117
Score = 30.2 bits (69), Expect = 0.68
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ--GKIRQKI 298
I VN V PGY+ T + E + + KI +I
Sbjct: 198 ITVNTVSPGYLATAMVE---AVPQDVLEAKILPQI 229
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 49.1 bits (118), Expect = 5e-07
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
K+ + D+ + I ++ + I T+H +D+LVNNAGI RD
Sbjct: 88 IKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDN 135
Score = 28.7 bits (65), Expect = 2.4
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIR 295
YS SK GV + +L+K+ R +I VN + PG++++D+T+ ++ + I
Sbjct: 193 YSSSKAGVIGFT----KSLAKELASR--NITVNAIAPGFISSDMTD---KISEQIKKNII 243
Query: 296 QKI 298
I
Sbjct: 244 SNI 246
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus
SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 48.6 bits (117), Expect = 6e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
V + D+ + + + G D+LVNNAGIY
Sbjct: 55 RVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLI 96
Score = 31.7 bits (73), Expect = 0.26
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y +K + L+ D + I VN + P V T TE + +
Sbjct: 154 YISTKAANIGFT----RALASDLGKDGITVNAIAPSLVRTATTE--ASALSAMFDVLPNM 207
Query: 299 YL-LKR 303
+ R
Sbjct: 208 LQAIPR 213
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 49.2 bits (118), Expect = 6e-07
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
+D+ ++ D + G +D+L+N A G+ A +T + +
Sbjct: 79 CLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTS 138
Query: 70 ALVTVCHILFPLL--RPHARVVNVASKLG 96
V +L+ +VN+ + LG
Sbjct: 139 GTFNVSRVLYEKFFRDHGGVIVNITATLG 167
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 48.7 bits (117), Expect = 6e-07
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++D+ D ++ + ++ G +++LV+NAG+ D
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADA 95
Score = 29.0 bits (66), Expect = 1.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
+ N V PGY++TD+T L Q I
Sbjct: 176 VTANVVAPGYIDTDMTR---ALDERIQQGALQFI 206
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 48.7 bits (117), Expect = 6e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
R + D+ + ++ D + G +D L NNAG AP
Sbjct: 57 EARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAP 100
Score = 32.2 bits (74), Expect = 0.15
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
G P + Y SK + L+ T + D +I VN + PGY+ + V +
Sbjct: 150 GPPNMAAYGTSKGAIIALT----ETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAK 205
Query: 292 GKIRQ 296
+
Sbjct: 206 VGSQY 210
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 48.7 bits (117), Expect = 6e-07
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+++ K + ++ + S KL D+ G +D + NAG D+
Sbjct: 65 KELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADS 115
Score = 31.7 bits (73), Expect = 0.23
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVLTPE-QGKI 294
SY+V+K G ++ +L+ + VN + PGY++T L++ + E Q
Sbjct: 174 SYNVAKAGCIHMA----RSLANEWRDF---ARVNSISPGYIDTGLSD---FVPKETQQLW 223
Query: 295 RQKIYLLKR 303
I + R
Sbjct: 224 HSMI-PMGR 231
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 48.6 bits (117), Expect = 6e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
D+ ++ + + G +D++VNNAGI RDT
Sbjct: 57 GGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDT 93
Score = 29.0 bits (66), Expect = 1.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQKI 298
I VN V PG++ +D+T L + KI I
Sbjct: 174 INVNVVCPGFIASDMTA---KLGEDMEKKILGTI 204
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 48.7 bits (117), Expect = 6e-07
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ ++ D+ + Q G + +LVNNAG
Sbjct: 63 AIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPK 103
Score = 36.0 bits (84), Expect = 0.010
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK-IRQK 297
Y SK V L+ ++ D I VN + PG + TD VLTPE + + +
Sbjct: 160 YGSSKAAVNHLT----RNIAFDVGPMGIRVNAIAPGAIKTDALA--TVLTPEIERAMLKH 213
Query: 298 I 298
Sbjct: 214 T 214
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 49.1 bits (118), Expect = 6e-07
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGG-LDLLVNNAGIYRDTAPGSFGQRAETT----- 63
NV D+L ++ KL + G L++LVNNAG+ + T
Sbjct: 71 NVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEA------KDFTEKDYN 124
Query: 64 --LATNFFALVTVCHILFPLLRP--HARVVNVASKLGML 98
+ TNF A + I +PLL+ + V+ ++S G
Sbjct: 125 IIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS 163
Score = 34.0 bits (79), Expect = 0.041
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
YS SK + +++ +KD I VN V PG + T L E P Q +
Sbjct: 171 YSASKGAINQMTKSLACEWAKDN----IRVNSVAPGVILTPLVETAIKKNPHQKEEIDNF 226
Query: 299 YLLKRT 304
+ +T
Sbjct: 227 --IVKT 230
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 48.7 bits (117), Expect = 7e-07
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQ----RAETTLATNFFA 70
D+ + + I + + Q G LD LVNNAGI + R E L N
Sbjct: 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQR--VDEMSVERIERMLRVNVTG 139
Query: 71 LVTVC-HILFPLLRPHA----RVVNVASKLGMLYNVP 102
+ + + R ++ +VNV+S +L +
Sbjct: 140 SILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSAT 176
Score = 36.4 bits (85), Expect = 0.007
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK 293
Y+ SK + + L+++ I VN V PG + TDL G P++ +
Sbjct: 181 YAASKAAIDTFT----IGLAREVAAEGIRVNAVRPGIIETDLHASGG--LPDRAR 229
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 48.8 bits (117), Expect = 7e-07
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ D+ I L + ++G +D+LVNNAG
Sbjct: 66 LREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGG 113
Score = 29.9 bits (68), Expect = 0.96
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
YS SK GV + L + R I VN V PG+V T +
Sbjct: 173 YSASKHGVVGFT----KALGLELARTGITVNAVCPGFVETPMAA 212
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 48.6 bits (117), Expect = 7e-07
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA 60
Q++ F + D+ ++ + +Q + G L++LVNNAGI PG
Sbjct: 44 QQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGI---LLPGDM---E 97
Query: 61 ETTLATNFFALVTV--------CHILFPLLRPH-ARVVNVASKLGM 97
L F L+ + C ++ ++N+AS
Sbjct: 98 TGRLED-FSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW 142
Score = 34.8 bits (81), Expect = 0.021
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 233 GWPEFS-YSVSKLGVAKLS---FIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
+++ YS SK V+ L+ + K+ I VN +HP + T + +
Sbjct: 144 PIEQYAGYSASKAAVSALTRAAALSCR-----KQGYAIRVNSIHPDGIYTPMMQA 193
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 48.3 bits (116), Expect = 8e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ D+ +S + L + + G LD+LVNNAGI RDT
Sbjct: 84 KADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDT 120
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 266 IIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
I VN V PG++ TD+T L E+ + + I
Sbjct: 201 ITVNAVAPGFIATDMTS---ELAAEK--LLEVI 228
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 48.3 bits (116), Expect = 9e-07
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
D+ D + +++ +D+LVNNAGI L N
Sbjct: 81 AEAVVADLADLEGAANVAEELA-ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLD 139
Query: 70 ALVTVCHILFPLL--RPHARVVNVASKLGML--YNVPS 103
A + + R+V +AS L NV +
Sbjct: 140 AAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAA 177
Score = 30.2 bits (69), Expect = 0.73
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 232 AGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
G +Y+ SK V L+ L+ + + VN + PGYV T T
Sbjct: 171 GGRNVAAYAASKHAVVGLT----RALASEWAGRGVGVNALAPGYVVTANTA 217
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 48.3 bits (116), Expect = 9e-07
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
D+ D ++ + + + G L + + AG+
Sbjct: 53 EAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSA 94
Score = 32.5 bits (75), Expect = 0.13
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
Y+ KLGV L+ TL+ + R + VN + PG + T +T L P +
Sbjct: 149 YAAGKLGVVGLA----RTLALELARKGVRVNVLLPGLIQTPMTA---GLPPWAWEQEVGA 201
Query: 298 I 298
Sbjct: 202 S 202
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 48.3 bits (116), Expect = 9e-07
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE---TTLATNFF 69
+ DI + + L D ++ G +D+LVNNAG F N F
Sbjct: 64 ACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKP---FDMPMADFRRAYELNVF 120
Query: 70 ALVTVCHILFPLLRP--HARVVNVASKLGMLYN 100
+ + ++ P + ++ + S N
Sbjct: 121 SFFHLSQLVAPEMEKNGGGVILTITSMAAENKN 153
Score = 37.1 bits (87), Expect = 0.004
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+ SK + L ++ D +I VN + PG + TD + V+TPE + +
Sbjct: 159 YASSKAAASHLV----RNMAFDLGEKNIRVNGIAPGAILTDALK--SVITPEIEQKMLQH 212
Query: 299 YLLKR 303
++R
Sbjct: 213 TPIRR 217
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 48.3 bits (116), Expect = 9e-07
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
+ D+ + + D + + GG+D+ V NAGI A + TN
Sbjct: 83 ALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVT 142
Query: 70 ALVTVCHILFPLLRPHAR---VVNVASKLGMLYNVP 102
+ + ++ AS G + N+P
Sbjct: 143 GVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP 178
Score = 33.3 bits (77), Expect = 0.068
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQK 297
Y SK V L+ ++ + I VN V PGY+ T+L E L K
Sbjct: 183 HYCTSKAAVVHLT----KAMAVELAPHQIRVNSVSPGYIRTELVEP---LADYHALWEPK 235
Query: 298 I 298
I
Sbjct: 236 I 236
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 48.3 bits (116), Expect = 9e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+D+ D +S+ + + G LD +V+ AGI RD
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDN 91
Score = 29.0 bits (66), Expect = 1.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+ S GV L+ TL+ + R I VN + PG++ T +T PE K+R+K
Sbjct: 148 YAASMAGVVGLT----RTLALELGRWGIRVNTLAPGFIETRMTAK----VPE--KVREKA 197
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 48.4 bits (116), Expect = 9e-07
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
V Q D+ D + ++ G ++++NNA + A +T
Sbjct: 78 VHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLN 137
Query: 70 ALVTVCHILFP-LLRPH--ARVVNVAS---KLGMLYNVPS 103
V + L++ A +++ + + G + VPS
Sbjct: 138 GTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPS 177
Score = 27.2 bits (61), Expect = 8.2
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK-IRQK 297
+ +K GV +S +L+ + + + N + PG + T + T K + +
Sbjct: 177 SASAKAGVEAMS----KSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGR 232
Query: 298 IYLLKR 303
I R
Sbjct: 233 I-PCGR 237
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 48.3 bits (116), Expect = 1e-06
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 17/107 (15%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAG-IYRDT-----APGSFGQRAETTL 64
F D+ + +L D+ + GG+D+L+NNAG + + + +
Sbjct: 59 AAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFY----DAVM 114
Query: 65 ATNFFALVTVCHILFPLLRPHA-------RVVNVASKLGMLYNVPSQ 104
N ++V P L A V++ S G P
Sbjct: 115 DANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGA 161
Score = 32.5 bits (75), Expect = 0.12
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
Y +K + + + + N V PG V+T T + +I
Sbjct: 164 YGAAKAFLHNVH----KNWVDFHTKDGVRFNIVSPGTVDTAFHA---DKTQDVRDRISNG 216
Query: 298 I 298
I
Sbjct: 217 I 217
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 48.8 bits (117), Expect = 1e-06
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGG-LDLLVNNAGIYRDT-----APGSFGQRAETTLATNF 68
LD+ ++ K+ + HGG +D+LVNNAGI RD + + +A N
Sbjct: 265 TLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRW----DAVIAVNL 320
Query: 69 FALVTVCHILFP--LLRPHARVVNVAS 93
A + L + RV+ ++S
Sbjct: 321 LAPQRLTEGLVGNGTIGEGGRVIGLSS 347
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 47.9 bits (115), Expect = 1e-06
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++D+ ++S+ GG DLL NAG+
Sbjct: 64 EVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMR 100
Score = 32.5 bits (75), Expect = 0.14
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-----GK 293
YS SK V + Q L+++ +I VN V PG+V T + E + + E
Sbjct: 159 YSASKFAV--FGWTQ--ALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEA 214
Query: 294 IRQKI 298
+R +
Sbjct: 215 VRAEY 219
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 23/109 (21%)
Query: 15 QLDILDQSSIH----KLHDDIQTQHGGLDLLVNNAGIYRDT-----APGSFGQRAETT-- 63
+ D+ SS+ + D G D+LVNNA Y T + A+
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 64 -----LATNFFALVTVCHILFPLLRPHA-------RVVNVASKLGMLYN 100
+N A + + VVN+ + L
Sbjct: 128 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPL 176
Score = 34.9 bits (81), Expect = 0.022
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 231 EAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTP 289
+ P F Y+++K + L+ + + I VN V PG +
Sbjct: 173 DLPLPGFCVYTMAKHALGGLT----RAAALELAPRHIRVNAVAPGLSLLP-----PAMPQ 223
Query: 290 EQGK-IRQKIYLLKR 303
E + R+K+ L +
Sbjct: 224 ETQEEYRRKVPLGQS 238
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 47.9 bits (115), Expect = 1e-06
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
V + D+ + + + + +D+L NNAGI P
Sbjct: 57 EVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTP 100
Score = 33.2 bits (77), Expect = 0.076
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK-IRQK 297
Y+V+K G+ L+ +++ I V PG V T++ + + + +
Sbjct: 157 YTVAKHGLIGLT----RSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKL 212
Query: 298 IYLLKR 303
+ L R
Sbjct: 213 MSLSSR 218
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 47.9 bits (115), Expect = 1e-06
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ D+ +S + L + G LD+++NNAG+
Sbjct: 61 AVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPV 99
Score = 36.7 bits (86), Expect = 0.006
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
WP F Y+ SK G+ ++ TL+ + I VN + PG +NT + + PEQ
Sbjct: 151 PWPLFVHYAASKGGMKLMT----ETLALEYAPKGIRVNNIGPGAINTPINA-EKFADPEQ 205
Query: 292 -GKIRQKI 298
+ I
Sbjct: 206 RADVESMI 213
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 47.9 bits (115), Expect = 1e-06
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQ-HGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATN 67
V D+ +S +L + + HG L++LVNNAGI + ++ N
Sbjct: 59 KVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSIN 118
Query: 68 FFALVTVCHILFPLLRP--HARVVNVASKLGML 98
F A + + P L+ VV ++S G L
Sbjct: 119 FEAAYHLSVLAHPFLKASERGNVVFISSVSGAL 151
Score = 32.5 bits (75), Expect = 0.12
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y +K + +L+ +KD I VN V PG + T L E + PEQ + K+
Sbjct: 159 YGATKGAMDQLTRCLAFEWAKDN----IRVNGVGPGVIATSLVE-MTIQDPEQKENLNKL 213
Query: 299 YLLKRT 304
+ R
Sbjct: 214 --IDRC 217
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 47.9 bits (115), Expect = 1e-06
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP--GSFGQRAETTLATN 67
+V + +L HGG+D+LV+NA + + + + L N
Sbjct: 64 SVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVN 123
Query: 68 FFALVTVCHILFPLL--RPHARVVNVAS 93
A V + + P + R V+ V+S
Sbjct: 124 VKATVLMTKAVVPEMEKRGGGSVLIVSS 151
Score = 33.6 bits (78), Expect = 0.065
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y+VSK + L+ L+ + +I VN + PG + T+ ++ + + + ++
Sbjct: 164 YNVSKTALLGLT----KNLAVELAPRNIRVNCLAPGLIKTNFSQ-VLWMDKARKEYMKES 218
Query: 299 YLLKR 303
++R
Sbjct: 219 LRIRR 223
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 47.6 bits (114), Expect = 1e-06
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD 50
++ VRF D+ +++ + + G + LVN AG
Sbjct: 45 EEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPG 94
Score = 29.1 bits (66), Expect = 1.4
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE-QGKIRQ 296
+Y+ SK GVA L+ +++ R I V + PG +T + + + Q +
Sbjct: 162 AYAASKGGVAALTL----PAARELARFGIRVVTIAPGIFDTPMMAG---MPQDVQDALAA 214
Query: 297 KIYLLKR 303
+ R
Sbjct: 215 SVPFPPR 221
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 48.0 bits (115), Expect = 1e-06
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 11/96 (11%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLATNFF 69
N D+ + + G +D L+ NAGI+ + E + F
Sbjct: 52 NAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTA--LADLPEDKIDAAFD 109
Query: 70 ALVTV-------C--HILFPLLRPHARVVNVASKLG 96
+ V L L+ VV S G
Sbjct: 110 DIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAG 145
Score = 33.3 bits (77), Expect = 0.081
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
Y+ +K V + ++ ++ + P + VN V PG +NTDL + EQ
Sbjct: 148 PNGGGPLYTATKHAV--VGLVR--QMAFELA-PHVRVNGVAPGGMNTDLRGPSSLGLSEQ 202
Query: 292 GKIRQKI 298
+
Sbjct: 203 SISSVPL 209
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 47.7 bits (114), Expect = 2e-06
Identities = 13/109 (11%), Positives = 26/109 (23%), Gaps = 23/109 (21%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT---------------APGSFGQR 59
+ + +L T G D+LVNNA + T +
Sbjct: 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETA 142
Query: 60 AETTLATNFFALVTVCHILFPLLRPHA--------RVVNVASKLGMLYN 100
+N A + + ++N+ +
Sbjct: 143 TADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL 191
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 47.6 bits (114), Expect = 2e-06
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNF 68
N + D+ D+ I + I+++ G +D+LVNNAGI R + +
Sbjct: 84 NAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDL 143
Query: 69 FALVTVCHILFPLL--RPHARVVNVASKLGML 98
A V + P + + H +++N+ S + L
Sbjct: 144 NAPFIVSKAVIPSMIKKGHGKIINICSMMSEL 175
Score = 30.3 bits (69), Expect = 0.69
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
+Y+ +K G+ L+ ++ + +I N + PGY+ T T
Sbjct: 182 AYAAAKGGLKMLT----KNIASEYGEANIQCNGIGPGYIATPQTA 222
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 47.5 bits (114), Expect = 2e-06
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT-------LA 65
DI D + + L D+ +G +D+++NNA P A TT +
Sbjct: 64 SVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKP-----FANTTFEHMRDAIE 118
Query: 66 TNFFALVTVCHILFPLLRPHA-RVVNVASKLG 96
F + + P L VVNV S +
Sbjct: 119 LTVFGALRLIQGFTPALEESKGAVVNVNSMVV 150
Score = 32.9 bits (76), Expect = 0.095
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y ++K + +S TL+ + I VN V PGY+ +
Sbjct: 160 YKMAKSALLAMS----QTLATELGEKGIRVNSVLPGYIWGGTLK 199
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 47.2 bits (113), Expect = 2e-06
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 4 CKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE-- 61
C+ DI D + + +L I ++G +D LVNNAG+ R S +
Sbjct: 53 CRAEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFG-ALSDLTEEDFD 111
Query: 62 TTLATNFFALVTVCHILFPLL--RPHARVVNVASKLGMLYN 100
T+ TN + LF L+ + + + S
Sbjct: 112 YTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF 152
Score = 38.7 bits (91), Expect = 0.001
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH------KGVLTPE 290
Y +SK G L T+ R+ ++ + V PG V T + ++ PE
Sbjct: 158 YCMSKFGQRGLV----ETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEMQALMMMPE 211
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 47.1 bits (113), Expect = 2e-06
Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT------ 63
++ LD+ + I + +++ LD+L N AG G +
Sbjct: 51 GIQTRVLDVTKKKQIDQFANEV----ERLDVLFNVAGFVHH------GTVLDCEEKDWDF 100
Query: 64 -LATNFFALVTVCHILFPLLRPH--ARVVNVASKLGMLYNVPSQ 104
+ N ++ + P + ++N++S + V ++
Sbjct: 101 SMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNR 144
Score = 34.8 bits (81), Expect = 0.022
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 232 AGWP-EFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE 290
G YS +K V L+ +++ D + I N V PG V+T + +
Sbjct: 139 KGVVNRCVYSTTKAAVIGLT----KSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGN 194
Query: 291 QGKIRQKI 298
+ R
Sbjct: 195 PEEARNDF 202
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 47.6 bits (114), Expect = 2e-06
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGS---FGQRAETTLATN 67
++D+ D++++ + + + G LD++V NAGI A F +
Sbjct: 73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAF----ADAFDVD 128
Query: 68 FFALVTVCHILFPLLRPHARVVNVASKLGM 97
F ++ H P L A ++ S G+
Sbjct: 129 FVGVINTVHAALPYLTSGASIITTGSVAGL 158
Score = 34.1 bits (79), Expect = 0.042
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVL 287
YS +K V + L+ + I N +HP VNTD+ +
Sbjct: 178 YSYAKQLVDSYT----LQLAAQLAPQS--IRANVIHPTNVNTDMLNSAPMY 222
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 47.5 bits (114), Expect = 2e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
V D+ ++ L + G LD+LVNNAG+ T
Sbjct: 75 VEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQT 115
Score = 32.1 bits (74), Expect = 0.18
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
Y+ +K GV L+ + + + +N V P E + E
Sbjct: 174 YAAAKAGVMALT----RCSAIEAVEFGVRINAVSPSIARHKFLE--KTSSSEL 220
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 47.8 bits (114), Expect = 2e-06
Identities = 13/109 (11%), Positives = 26/109 (23%), Gaps = 23/109 (21%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT---------------APGSFGQR 59
+ + +L T G D+LVNNA + T +
Sbjct: 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETA 179
Query: 60 AETTLATNFFALVTVCHILFPLLRPHA--------RVVNVASKLGMLYN 100
+N A + + ++N+ +
Sbjct: 180 TADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL 228
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 47.2 bits (113), Expect = 2e-06
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
V D+ +H + G + +LVN+AG
Sbjct: 75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGG 115
Score = 30.3 bits (69), Expect = 0.62
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y+ SK GV + ++ + + I VN V PGYV T + E
Sbjct: 175 YTASKHGVVGFT----KSVGFELAKTGITVNAVCPGYVETPMAE 214
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 47.2 bits (113), Expect = 2e-06
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
+ D+ D+ + D+ + G LD++V NAGI AP
Sbjct: 79 AIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAP 121
Score = 31.4 bits (72), Expect = 0.28
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
P + Y+ +K + L+ + + I VN V PG + T+++++ + E+
Sbjct: 173 TTPGATAYTATKAAQVAIV----QQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEE 228
Query: 292 GKIRQK 297
I +
Sbjct: 229 TAIPVE 234
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 47.1 bits (113), Expect = 2e-06
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSF 56
+D+ D S + D + GG+D LVNNA I+
Sbjct: 60 AISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFL 105
Score = 32.9 bits (76), Expect = 0.11
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQKI 298
Y ++K+G+ L+ LS++ +I +N + PG ++T+ E K
Sbjct: 158 YGLAKVGINGLT----QQLSRELGGRNIRINAIAPGPIDTEANR--TTTPKEMVDDIVKG 211
Query: 299 YLLKR 303
L R
Sbjct: 212 LPLSR 216
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 46.8 bits (112), Expect = 2e-06
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 9 NNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLA--- 65
NNV + D+ + +L + + +V++AG G FG E
Sbjct: 47 NNVGYRARDLASHQEVEQLFEQL---DSIPSTVVHSAGS------GYFGLLQEQDPEQIQ 97
Query: 66 ----TNFFALVTVCHILFPLLRPHAR-VVNVAS 93
N + + V L + VV + S
Sbjct: 98 TLIENNLSSAINVLRELVKRYKDQPVNVVMIMS 130
Score = 29.1 bits (66), Expect = 1.7
Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 60/167 (35%)
Query: 132 GPLDKILDTAMDTAPGSFGQRAETTLATNFFALVTVCHILFPLLRPHAR-VVNVASKLGM 190
G + + + + +T + N + + V L + VV + S
Sbjct: 83 GYFGLLQEQDPE--------QIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAA- 133
Query: 191 LYNVPSQELRQTLFNESLTEDQLLDMMTDYVQLAKEGKDKEAGWPEFSYSVSKLGVAKLS 250
+Q ES Y K V
Sbjct: 134 ---------QQPKAQEST------------------------------YCAVKWAV--KG 152
Query: 251 FIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKG-------VLTPE 290
I+ ++ + + + + V+PG + T+ E G ++ E
Sbjct: 153 LIE--SVRLELKGKPMKIIAVYPGGMATEFWETSGKSLDTSSFMSAE 197
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 46.9 bits (112), Expect = 2e-06
Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 12/97 (12%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYR-----DTAPGSFGQRAETTLA 65
+ LD ++ + + H L++ + N G +T F
Sbjct: 58 IVARSLDARNEDEVTAFLNAAD-AHAPLEVTIFNVGANVNFPILETTDRVF----RKVWE 112
Query: 66 TNFFALVTVCHILFPLLRPHA--RVVNVASKLGMLYN 100
+A L+ H ++ + +
Sbjct: 113 MACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG 149
Score = 28.4 bits (64), Expect = 3.0
Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIV-NPVHPGYVNTDLTEHK 284
G F+ ++ +K G+ ++ +++++ +I V + + V+T +
Sbjct: 148 GGSGFAAFASAKFGLRAVA----QSMARELMPKNIHVAHLIIDSGVDTAWVRER 197
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 46.9 bits (112), Expect = 3e-06
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD 50
+ K NN F D+ + + + + G +D+ VN AGI
Sbjct: 50 EAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVA 99
Score = 29.9 bits (68), Expect = 0.90
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE-QGKIRQ 296
+YS SK G+ ++ +++D I V + PG T L L + +
Sbjct: 169 AYSASKGGIVGMTL----PIARDLAPIGIRVMTIAPGLFGTPLLTS---LPEKVCNFLAS 221
Query: 297 KIYLLKR 303
++ R
Sbjct: 222 QVPFPSR 228
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 46.8 bits (112), Expect = 3e-06
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
V DI + I +L + + GG D+LV + G PG F + +
Sbjct: 59 QVDIVAGDIREPGDIDRLFEKAR-DLGGADILVYSTGG---PRPGRFMELGVEDWDESYR 114
Query: 66 TNFFALVTVCHILFPLL--RPHARVVNVASKLG-------MLYNV 101
+ V V + + R+V + S L N+
Sbjct: 115 LLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNI 159
Score = 32.9 bits (76), Expect = 0.11
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
++ +L V + TL+ + + VN V P + TD
Sbjct: 157 SNIMRLPVIGVV----RTLALELAPHGVTVNAVLPSLILTDRVRS 197
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 46.9 bits (112), Expect = 3e-06
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
V Q +I ++ ++ L G ++ LVNN G +
Sbjct: 74 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLS 114
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET:
NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 46.7 bits (112), Expect = 3e-06
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 12 RFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
F Q+D+ D+ + ++ G +D+LVNNA I
Sbjct: 52 AFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPG 91
Score = 39.0 bits (92), Expect = 0.001
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQK 297
+Y+ SK G+ L+ +L+ D I VN V PG + T+ L+P+ + R+
Sbjct: 148 AYNASKGGLVNLT----RSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRD 203
Query: 298 I 298
Sbjct: 204 W 204
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 46.3 bits (111), Expect = 3e-06
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 7/100 (7%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
+ Q+D+ + I K+ + I + G +D+L+NNA + +
Sbjct: 57 ILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLN 116
Query: 70 ALVTVCHILFPLLRPH---ARVVNVAS---KLGMLYNVPS 103
+ ++N+ + + S
Sbjct: 117 GTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHS 156
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 46.8 bits (112), Expect = 3e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++D+ D+ I + D GG+D LV NAG+
Sbjct: 76 GAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLA 117
Score = 34.1 bits (79), Expect = 0.046
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
+Y +SK G+ +LS + + R I N + P +V+T + +
Sbjct: 174 AYGMSKAGIIQLS----RITAAELRSSGIRSNTLLPAFVDTPMQQT 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 55/359 (15%), Positives = 107/359 (29%), Gaps = 121/359 (33%)
Query: 8 NNNVRFHQL------------DILDQSSIH-----KLHDDIQTQHG-GLDLLVNNAGIYR 49
N + F +L D++ S+ + D + GL++L
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-------- 216
Query: 50 DTAPGSFGQRAETTLATNFFALVTVCHILFPL--LRPHARVVNVASKLGMLYNVPSQELR 107
+ + T ++ + + PL + A V A LG P ELR
Sbjct: 217 -----EWLENPSNTPDKDYLLSIPIS---CPLIGVIQLAHYVVTAKLLGF---TPG-ELR 264
Query: 108 QTLFNESLTEDQLLDMMTDYVQYNGPLDKILDTAMDTAPG----SFGQRAETTLATNFFA 163
L + T G ++ TA+ A SF + FF
Sbjct: 265 SYL--KGAT---------------GHSQGLV-TAVAIAETDSWESFFVSVRKAITVLFF- 305
Query: 164 LVTVCHILFPLLRPHARVVNVASKLG------ML--YNVPSQELRQTL--FNESLTEDQL 213
+ C+ +P ++ + + ML N+ ++++ + N L +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 214 LDMMTDYVQLAKEGKDKE--AGWPE----FSYSVSKLGVA-------------KLSFIQ- 253
+ + L G +G P+ + ++ K KL F
Sbjct: 366 V-----EISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 254 --------H--------ATLSKDKRRPDIIVN------PVHPGYVNTDLTEHKGVLTPE 290
H ++KD + ++ N PV+ + +DL G ++
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD;
1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 46.4 bits (111), Expect = 4e-06
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++D+ D+ + + + GG D++VNNAG+ T
Sbjct: 53 AVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPST 93
Score = 34.8 bits (81), Expect = 0.021
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
YS SK V Q T ++D I VN PG V T +
Sbjct: 152 YSSSKFAV--RGLTQ--TAARDLAPLGITVNGYCPGIVKTPMWA 191
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd;
NAD(P)-binding, structural genomics, PSI-biology; HET:
MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 46.4 bits (111), Expect = 4e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
Q+D+ Q SI GGLD+LVNNA ++
Sbjct: 55 AAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLA 96
Score = 35.6 bits (83), Expect = 0.013
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
Y +K V +S Q + D + I VN + PG V+ + +
Sbjct: 155 YCATKAAV--ISLTQ--SAGLDLIKHRINVNAIAPGVVDGEHWDG 195
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 46.4 bits (111), Expect = 4e-06
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAG--IYRDT 51
++ K+ ++F Q D+ + +HK+ ++ + G +D L+NNAG ++
Sbjct: 49 KETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERK 101
Score = 30.2 bits (69), Expect = 0.62
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
++ +K+G+ L+ T++ ++ I N V PG + ++ E E
Sbjct: 161 FAAAKVGLVSLT----KTVAYEEAEYGITANMVCPGDIIGEMKE---ATIQEARQLKEHN 213
Query: 298 I 298
Sbjct: 214 T 214
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 46.0 bits (110), Expect = 5e-06
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT------ 63
F D+ + + L + + G LD +VNNAG + ET+
Sbjct: 55 GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQR-----PEETSAQGFRQ 109
Query: 64 -LATNFFALVTVCHILFPLLRP-HARVVNVASKLGM 97
L N T+ + P LR V+N++S +G
Sbjct: 110 LLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA 145
Score = 36.4 bits (85), Expect = 0.009
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
G + Y +K V ++ L+ D+ + VN + PG + T L E L P+
Sbjct: 147 GQAQAVPYVATKGAVTAMT----KALALDESPYGVRVNCISPGNIWTPLWEELAALMPDP 202
Query: 292 GKIRQKI 298
++
Sbjct: 203 RASIREG 209
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 46.0 bits (110), Expect = 5e-06
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
F LD+ D+++ D+ + GG D+LVNNAGI +
Sbjct: 54 KAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIK 95
Score = 34.8 bits (81), Expect = 0.022
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
YS +K V Q +++ VN PG V T + E
Sbjct: 154 YSTTKFAV--RGLTQ--AAAQELAPKGHTVNAYAPGIVGTGMWEQ 194
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 46.0 bits (110), Expect = 5e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ D+ + + D I ++G + +LVNNAGI
Sbjct: 48 YDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYG 88
Score = 34.5 bits (80), Expect = 0.034
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 233 GWPEFS-YSVSKLGVAKLS---FIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
S Y SK V L+ + +A P + N V P ++T L
Sbjct: 139 ITKNASAYVTSKHAVIGLTKSIALDYA--------PLLRCNAVCPATIDTPLVR 184
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 46.0 bits (110), Expect = 5e-06
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 17 DILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFG----QRAETTLATNFFALV 72
D+ D+S L + GGLD+L AG TA ++ + T A N FAL
Sbjct: 108 DLSDESFARSLVHKAREALGGLDILALVAGKQ--TAIPEIKDLTSEQFQQTFAVNVFALF 165
Query: 73 TVCHILFPLLRPHARVVNVAS 93
+ PLL A ++ +S
Sbjct: 166 WITQEAIPLLPKGASIITTSS 186
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 46.0 bits (110), Expect = 6e-06
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 22/107 (20%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETT------- 63
D+ D++ L + + GGLD NNAG + +
Sbjct: 59 AAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGE-----ISSLSVEGWRET 113
Query: 64 LATN----FFALVTVCHILFPLLRPH--ARVVNVASKLGMLYNVPSQ 104
L TN F A P + + +S +G
Sbjct: 114 LDTNLTSAFLA----AKYQVPAIAALGGGSLTFTSSFVGHTAGFAGV 156
Score = 32.9 bits (76), Expect = 0.091
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 232 AGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHK-GVLTP 289
AG+ + Y+ SK G+ L L+ + I VN + PG +T P
Sbjct: 151 AGFAGVAPYAASKAGLIGLV----QALAVELGARGIRVNALLPGGTDTPANFANLPGAAP 206
Query: 290 EQGKIRQKIYLLKR 303
E + ++ LKR
Sbjct: 207 ETRGFVEGLHALKR 220
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 46.0 bits (110), Expect = 6e-06
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
++V + DI ++ + + ++ G +D+LVNNAGI
Sbjct: 47 ERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQN 99
Score = 34.4 bits (80), Expect = 0.035
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
P + Y+ +K V ++ L+ + I V ++P T L E
Sbjct: 153 PRPNLAWYNATKGWVVSVT----KALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSE- 207
Query: 292 GKIRQKI 298
+IR+K
Sbjct: 208 -EIRKKF 213
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 45.7 bits (109), Expect = 6e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
H D+ +I + HG D+LVNNAG+ P
Sbjct: 80 AESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGP 122
Score = 36.0 bits (84), Expect = 0.010
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQ 296
Y+ SK G+ L + +++ R+ + V+ V PG V T+ L+ ++ +
Sbjct: 179 YTASKWGLNGLM----TSAAEELRQHQVRVSLVAPGSVRTEFGVG---LSAKKSALGA 229
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 45.6 bits (109), Expect = 6e-06
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
D+ D ++ + + + +LVN+AGI R +A N
Sbjct: 60 AARIVADVTDAEAMTAAAAEAE-AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVD 118
Query: 70 ALVTVCHILFP--LLRPHARVVNVASKLGMLYNVP 102
+ + R +VN+ S G + N P
Sbjct: 119 GMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRP 153
Score = 32.9 bits (76), Expect = 0.11
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 232 AGWPEFSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ 291
SY SK V +L+ L+ + + VN + PGYV T++T E+
Sbjct: 152 RPQFASSYMASKGAVHQLT----RALAAEWAGRGVRVNALAPGYVATEMTLK----MRER 203
Query: 292 GKIRQKIYLLKRT 304
++ + L T
Sbjct: 204 PELFETW--LDMT 214
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 46.0 bits (110), Expect = 6e-06
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE----TTLA 65
++D+ + + + G +D+LVNNAG G+ E ++
Sbjct: 74 KAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGF---GTTGNVVTIPEETWDRIMS 130
Query: 66 TNFFALVTVCHILFPLLRPH--ARVVNVASKLGM 97
N + + P++R + ++N S
Sbjct: 131 VNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTAT 164
Score = 35.6 bits (83), Expect = 0.013
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 237 FSYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQ 296
+Y SK ++ L+ ++ D + I VN V PG +++ + K+R
Sbjct: 171 TAYVASKGAISSLT----RAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRS 226
Query: 297 KI 298
Sbjct: 227 DF 228
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 45.7 bits (109), Expect = 8e-06
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 15 QLDILD----QSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
Q D+ + +S ++ + G D+LVNNA + T
Sbjct: 80 QADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPT 120
Score = 30.3 bits (69), Expect = 0.73
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 231 EAGWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTP 289
+ FS Y++ K + L+ + + + I VN V PG + L +
Sbjct: 185 DQPCMAFSLYNMGKHALVGLT----QSAALELAPYGIRVNGVAPGV--SLLPV---AMGE 235
Query: 290 EQ-GKIRQKIYLLKR 303
E+ K R+K+ L +R
Sbjct: 236 EEKDKWRRKVPLGRR 250
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 45.8 bits (109), Expect = 8e-06
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 36 GGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFALVTVCHILFPLLRP--HARVV 89
G +D++VNNAGI RD SF + ++ + V + ++ + R++
Sbjct: 91 GRIDVVVNNAGILRD---RSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRII 147
Query: 90 NVASKLGMLYNV 101
AS G+ N
Sbjct: 148 MTASASGIYGNF 159
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 45.3 bits (108), Expect = 1e-05
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
V F + D+ D SS D + + G +D LVNNAGI
Sbjct: 81 VIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIV 121
Score = 34.5 bits (80), Expect = 0.036
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK-IRQK 297
Y +SK G+A S L+ I V V PG + +D+T ++ + I
Sbjct: 184 YCMSKAGLAAFS----QGLALRLAETGIAVFEVRPGIIRSDMTA---AVSGKYDGLIESG 236
Query: 298 IYLLKR 303
+ ++R
Sbjct: 237 LVPMRR 242
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 45.2 bits (108), Expect = 1e-05
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 17 DILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFG----QRAETTLATNFFALV 72
D+ D+ + + Q G L++LVNN ++ E T N F+
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQ--QYPQQGLEYITAEQLEKTFRINIFSYF 162
Query: 73 TVCHILFPLLRPHARVVNVAS 93
V L+ ++N AS
Sbjct: 163 HVTKAALSHLKQGDVIINTAS 183
Score = 27.1 bits (61), Expect = 8.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 154 ETTLATNFFALVTVCHILFPLLRPHARVVNVAS 186
E T N F+ V L+ ++N AS
Sbjct: 151 EKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 44.9 bits (107), Expect = 1e-05
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNF 68
++ D+ + + + ++ +D+L+NN GI+ N
Sbjct: 62 ILQPVVADLGTEQGCQDVIE----KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNI 117
Query: 69 FALVTVCHILFPLL--RPHARVVNVASKLG 96
+ V + + R RV+ +AS+
Sbjct: 118 MSGVRLTRSYLKKMIERKEGRVIFIASEAA 147
Score = 33.3 bits (77), Expect = 0.072
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
YS +K LS +L++ ++ VN + PG T+ E
Sbjct: 157 YSATKTMQLSLS----RSLAELTTGTNVTVNTIMPGSTLTEGVET 197
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 44.0 bits (105), Expect = 2e-05
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
D L++ L GGL +LV+ A + L +
Sbjct: 45 AVPLPTD-LEKDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLD 103
Query: 70 ALVTVCHILFPLLRP--HARVVNVASKLGMLYNVP 102
+ P + RV+ + S P
Sbjct: 104 VAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGP 138
Score = 32.1 bits (74), Expect = 0.16
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
+Y+ +K + L+ L+K+ R I VN + PGYV T+ T
Sbjct: 143 AYTTAKTALLGLT----RALAKEWARLGIRVNLLCPGYVETEFTL 183
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 44.5 bits (106), Expect = 2e-05
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGG-LDLLVNNAGIYRDT 51
Q D+ + + L + +Q ++V+ AGI +D
Sbjct: 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDE 106
Score = 29.4 bits (67), Expect = 1.1
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIRQK 297
Y+ SK GV L+ T +++ R I N V PG++ T +T+ + + KI +
Sbjct: 165 YAASKAGVIGLT----QTAARELGRHGIRCNSVLPGFIATPMTQ---KVPQKVVDKITEM 217
Query: 298 I 298
I
Sbjct: 218 I 218
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 44.4 bits (106), Expect = 2e-05
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYR-----DTAPGSFGQRAETTL 64
+ +D+ D + + G +DLLVNNA + + +F + +
Sbjct: 53 GIEPVCVDLGDWEATERALG----SVGPVDLLVNNAAVALLQPFLEVTKEAF----DRSF 104
Query: 65 ATNFFALVTVCHILFPLLRPHAR---VVNVASKLG 96
N A++ V I+ L +VNV+S+
Sbjct: 105 EVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCS 139
Score = 32.1 bits (74), Expect = 0.16
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y +K + L+ ++ + I VN V+P V T + +
Sbjct: 148 VYCSTKGALDMLT----KVMALELGPHKIRVNAVNPTVVMTSMGQ 188
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 44.0 bits (105), Expect = 2e-05
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ + +N ++ ++ L + LD+LV NAGI DT
Sbjct: 52 KSLGNALKDNYTIEVCNLANKEECSNLIS----KTSNLDILVCNAGITSDT 98
Score = 28.6 bits (65), Expect = 2.5
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQ-GKIR 295
Y SK G+ ++ +LS + R I VN V PG++ +D+T+ L +Q I
Sbjct: 156 YCASKAGLIGMT----KSLSYEVATR--GITVNAVAPGFIKSDMTD---KLNEKQREAIV 206
Query: 296 QKI 298
QKI
Sbjct: 207 QKI 209
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 44.1 bits (105), Expect = 2e-05
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 14 HQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++D+ D++++ + + GG+D+ + NAGI
Sbjct: 76 AKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIA 113
Score = 34.4 bits (80), Expect = 0.037
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGV 286
Y SK GV L+ + D I VN V PG + T +T + V
Sbjct: 171 YVSSKWGVIGLT----KCAAHDLVGYG--ITVNAVAPGNIETPMTHNDFV 214
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 44.1 bits (105), Expect = 2e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAE--TTLATNF 68
+ ++D+ D ++ D Q G LD++V NAGI + + N
Sbjct: 78 IVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINL 137
Query: 69 FALVTVCHILFPLLRPHAR---VVNVASKLGM 97
+ P + R ++ +S G+
Sbjct: 138 AGVWKTVKAGVPHMIAGGRGGSIILTSSVGGL 169
Score = 32.9 bits (76), Expect = 0.11
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGV 286
+P Y +K GV L + + I VN VHP +V T + ++G
Sbjct: 171 AYPHTGHYVAAKHGVVGLM----RAFGVELGQHM--IRVNSVHPTHVKTPMLHNEGT 221
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 44.1 bits (105), Expect = 2e-05
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
+ Q+D+ D ++ DD TQ G LD+++ NA + +
Sbjct: 91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTR 133
Score = 33.3 bits (77), Expect = 0.084
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
Y SK G+ L T++ + +I VN V P V T + +
Sbjct: 191 YIASKHGLHGLM----RTMALELGPRNIRVNIVCPSSVATPMLLN 231
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 36 GGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFALVTVCHILFPLLRP--HARVV 89
G +D+LVNNAGI RD SF + ++ + + + + +P R++
Sbjct: 394 GTIDILVNNAGILRD---RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRII 450
Query: 90 NVASKLGMLYNV 101
N+ S G+ N
Sbjct: 451 NITSTSGIYGNF 462
Score = 43.9 bits (104), Expect = 4e-05
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 36 GGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFALVTVCHILFPLLRP--HARVV 89
G + +++NNAGI RD S + E + + V +P + + R+V
Sbjct: 90 GTVHVIINNAGILRD---ASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIV 146
Query: 90 NVASKLGMLYNV 101
N +S G+ N
Sbjct: 147 NTSSPAGLYGNF 158
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 44.1 bits (105), Expect = 2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD 50
F Q D+ DQ + + G LD+LVNNAG+ +
Sbjct: 59 KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE 99
Score = 37.6 bits (88), Expect = 0.003
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y SK G+ + F + A L+ + + +N + PG+VNT + E
Sbjct: 153 YCASKHGI--VGFTRSAALAANLMNSGVRLNAICPGFVNTAILE 194
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 44.0 bits (105), Expect = 2e-05
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYR-----DTAPGSFGQRAETTL 64
+ +D+ D + K G +DLLVNNA + + +F + +
Sbjct: 53 GIEPVCVDLGDWDATEKALG----GIGPVDLLVNNAALVIMQPFLEVTKEAF----DRSF 104
Query: 65 ATNFFALVTVCHILFPLLRPHA---RVVNVASKLGML 98
+ N ++ V ++ + +VNV+S + +
Sbjct: 105 SVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV 141
Score = 31.7 bits (73), Expect = 0.22
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
+YS +K + L+ ++ + I VN V+P V TD+ +
Sbjct: 148 TYSSTKGAMTMLT----KAMAMELGPHKIRVNSVNPTVVLTDMGK 188
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 43.7 bits (104), Expect = 3e-05
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
++D+ ++ + + + ++G +D+LVNNAGI + +
Sbjct: 55 SDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYS 95
Score = 32.5 bits (75), Expect = 0.13
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 11/49 (22%)
Query: 238 SYSVSKLGVAKLS---FIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
+Y SK + L+ I +A P I N V PG + T +
Sbjct: 152 AYVTSKHALLGLTRSVAIDYA--------PKIRCNAVCPGTIMTPMVIK 192
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 44.4 bits (105), Expect = 3e-05
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 36 GGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFALVTVCHILFPLLR--PHARVV 89
G +D+LVNNAGI RD S + +E + FP ++ + R++
Sbjct: 101 GRVDILVNNAGILRD---RSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRII 157
Query: 90 NVASKLGMLYNV 101
+S G+ N
Sbjct: 158 MTSSNSGIYGNF 169
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 43.3 bits (103), Expect = 4e-05
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGI 47
H +D+ ++ S+ L D G LD++ NNA
Sbjct: 58 GAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAH 95
Score = 34.8 bits (81), Expect = 0.023
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGKIRQK 297
+Y+ +K + L+ ++ R + N + PG V T E L I
Sbjct: 158 AYACTKAAIETLT----RYVATQYGRHGVRCNAIAPGLVRTPRLE--VGLPQPIVDIFAT 211
Query: 298 IYLLKR 303
+L R
Sbjct: 212 HHLAGR 217
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 43.3 bits (103), Expect = 4e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAP 53
V D+ D++ + + G +D NNAGI P
Sbjct: 66 VLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNP 108
Score = 31.4 bits (72), Expect = 0.33
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTE 282
Y+ +K GV L+ + + R I +N + PG + T + E
Sbjct: 164 GYAAAKHGVVGLT----RNSAVEYGRYGIRINAIAPGAIWTPMVE 204
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 43.4 bits (103), Expect = 5e-05
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDT 51
+ Q D+ D +S+ + D+ + G +D+LV+N GI
Sbjct: 109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQG 149
Score = 34.2 bits (79), Expect = 0.045
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 239 YSVSKLGVAKLSFIQHATLSKD--KRRPDIIVNPVHPGYVNTDLTEHKGV 286
Y+ SK GV L +L+ + + I VN V+PG VNT++ ++ +
Sbjct: 208 YAASKHGVQGLM----LSLANEVGRHN--IRVNSVNPGAVNTEMALNEKL 251
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 42.9 bits (102), Expect = 6e-05
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
LD+ D +++ +L D Q G LD++V NAG+ +T + N
Sbjct: 79 ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLT 138
Query: 70 ALVTVCHILFPLLRPHAR---VVNVASKLGM 97
P + +V V+S G+
Sbjct: 139 GTWRTLRATVPAMIEAGNGGSIVVVSSSAGL 169
Score = 33.7 bits (78), Expect = 0.054
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGV 286
YS SK G+ L+ TL+ + I VN +HP V T + E + +
Sbjct: 178 YSASKHGLTALT----NTLAIELGEYGIRVNSIHPYSVETPMIEPEAM 221
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 42.6 bits (101), Expect = 7e-05
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD 50
+ V + + RF D+ D++++ D + G L ++VN AG
Sbjct: 44 EDVVADLGDRARFAAADVTDEAAVASALDLAE-TMGTLRIVVNCAGTGNA 92
Score = 28.7 bits (65), Expect = 2.0
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
+YS SK GV ++ +++D I V + PG +T L
Sbjct: 162 AYSASKGGVVGMTL----PIARDLASHRIRVMTIAPGLFDTPLLAS 203
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 42.2 bits (100), Expect = 9e-05
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-ETTLATNFF 69
+ +D D + K+ DD G LD++V NAG+ A + N
Sbjct: 75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVT 134
Query: 70 ALVTVCHILFPLLRPHAR---VVNVASKLGM 97
P + R ++ ++S GM
Sbjct: 135 GTWNTVMAGAPRIIEGGRGGSIILISSAAGM 165
Score = 34.8 bits (81), Expect = 0.024
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 233 GWPEFS-YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGV 286
P Y+ SK V L+ + + + I VN VHPG VNT + V
Sbjct: 167 MQPFMIHYTASKHAVTGLA----RAFAAELGKHSIRVNSVHPGPVNTPMGSGDMV 217
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 42.2 bits (100), Expect = 1e-04
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 1 QKVCK--NNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQ 58
QKVC + + + F D+ + L D +HG LD++ N G+ T
Sbjct: 54 QKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSI--- 110
Query: 59 RAETTLA 65
E
Sbjct: 111 -LEAGNE 116
Score = 32.1 bits (74), Expect = 0.20
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 12/72 (16%)
Query: 238 SYSVSKLGVAKLSF---IQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK- 293
Y+ +K V L+ + I VN V P V + L + + +
Sbjct: 166 VYTATKHAVLGLTTSLCTELG-------EYGIRVNCVSPYIVASPLLTDVFGVDSSRVEE 218
Query: 294 -IRQKIYLLKRT 304
Q L
Sbjct: 219 LAHQAANLKGTL 230
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 41.1 bits (97), Expect = 2e-04
Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 32/175 (18%)
Query: 125 TDYVQYNGPLDKILDTAMDTAPGSFGQRAETTLATNFFALVTVCHILFPLLRP--HARVV 182
+ G LD ++ A + +A N+F + + L L V
Sbjct: 54 AVLDRCGGVLDGLVCCAGVGVTAANSGL---VVAVNYFGVSALLDGLAEALSRGQQPAAV 110
Query: 183 NVASKLGMLYNVPSQELRQTLFNESLTEDQLLDMMT----DYVQLAKEGKDKEAGWPEFS 238
V S +L + D + + + + G +
Sbjct: 111 IVGSIAATQ----------------PGAAELPMVEAMLAGDEARAIELAE--QQGQTHLA 152
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK 293
Y+ SK V L+ D + +N V PG V T L + P G+
Sbjct: 153 YAGSKYAVTCLA----RRNVVDWAGRGVRLNVVAPGAVETPLLQA-SKADPRYGE 202
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 30 DIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAETTLATNFFALVTVCHILFPLLRP--HAR 87
+ G LD LV AG+ A +A N+F + + L L
Sbjct: 55 VLDRCGGVLDGLVCCAGVGVTAANS------GLVVAVNYFGVSALLDGLAEALSRGQQPA 108
Query: 88 VVNVASKLGML 98
V V S
Sbjct: 109 AVIVGSIAATQ 119
Score = 36.4 bits (85), Expect = 0.007
Identities = 7/73 (9%), Positives = 15/73 (20%), Gaps = 5/73 (6%)
Query: 29 DDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRAET---TLATNFFALVTVCHILFPLLRP- 84
+ + GL + VN G+ + + A P++
Sbjct: 72 VGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAM 131
Query: 85 -HARVVNVASKLG 96
Sbjct: 132 LAGDEARAIELAE 144
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 41.1 bits (97), Expect = 2e-04
Identities = 5/47 (10%), Positives = 14/47 (29%)
Query: 1 QKVCKNNNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGI 47
+ + N F ++ + S+ + +V + G
Sbjct: 68 KALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGF 114
Score = 32.3 bits (74), Expect = 0.17
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE-QGKIRQ 296
+Y+ +K GV L+ ++D I VN + PG + T + E + E K
Sbjct: 186 AYAAAKAGVIGLTI----AAARDLSSAGIRVNTIAPGTMKTPIMES---VGEEALAKFAA 238
Query: 297 KIYLLKR 303
I KR
Sbjct: 239 NIPFPKR 245
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 36 GGLDLLVNNAGIYRDTAPGSFGQRAE----TTLATNFFALVTVCHILFPLLRP------- 84
GGLD+LVNNAGI RD +E +A + R
Sbjct: 113 GGLDVLVNNAGIVRD---RMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKA 169
Query: 85 -HARVVNVASKLGMLYNV 101
R++N +S G+ +V
Sbjct: 170 VDGRIINTSSGAGLQGSV 187
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 40.3 bits (95), Expect = 3e-04
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 10 NVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRD 50
++ + + D+ + + + Q + L +V+ AG+
Sbjct: 40 DLIYVEGDVTREEDVRRAVARAQ-EEAPLFAVVSAAGVGLA 79
Score = 29.5 bits (67), Expect = 1.3
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 238 SYSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPE-QGKIRQ 296
+Y+ SK GV L+ +++ I V V PG +T L + L + + +
Sbjct: 147 AYAASKGGVVALTL----PAARELAGWGIRVVTVAPGLFDTPLLQG---LPEKAKASLAA 199
Query: 297 KIYLLKR 303
++ R
Sbjct: 200 QVPFPPR 206
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 40.6 bits (96), Expect = 4e-04
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 11 VRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYR 49
+ Q D+ D+ S+ + G LD++V NAGI
Sbjct: 76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP 114
Score = 33.3 bits (77), Expect = 0.078
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEH 283
Y +K GV L + I VN +HP V T + +
Sbjct: 175 YVAAKHGVVGLM----RVYANLLAGQMIRVNSIHPSGVETPMINN 215
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 39.8 bits (94), Expect = 5e-04
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 14 HQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIYRDTAPGSFGQRA-----ETTLATNF 68
H+ + D + K D + + +D+LV NAG G F + + + F
Sbjct: 61 HRYVVCD---LRKDLDLLFEKVKEVDILVLNAGG---PKAGFF-DELTNEDFKEAIDSLF 113
Query: 69 FALVTVCHILFPLL--RPHARVVNVAS 93
++ + P + + R+V + S
Sbjct: 114 LNMIKIVRNYLPAMKEKGWGRIVAITS 140
Score = 31.4 bits (72), Expect = 0.33
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 239 YSVSKLGVAKLSFIQHATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVLTPEQGK 293
+ +++ + TLS + I VN V PG+ T+ + L E+ K
Sbjct: 153 SNSARMALTGFL----KTLSFEVAPYGITVNCVAPGWTETERVKE---LLSEEKK 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 7e-04
Identities = 32/253 (12%), Positives = 68/253 (26%), Gaps = 69/253 (27%)
Query: 4 CKNN--NNNVRFHQLDILDQSSIHKLHDDIQTQ--------HG----GLDLLVNNAGIYR 49
++ N+N F + ++ KL + G G + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CL 172
Query: 50 DTA-----PG-----SFGQRAETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGMLY 99
+ L + + + P + +S + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDP---NWTSRSDHSSNIKLRI 227
Query: 100 NVPSQELRQTLFNESLTEDQLLDMMTDYVQYNGPLDKILDTAMDTAPGSFGQRAETTLAT 159
+ ELR+ L ++ E+ LL + VQ K + A +
Sbjct: 228 HSIQAELRRLLKSKPY-ENCLLVL--LNVQNA----KAWN-AFN-----LS--------- 265
Query: 160 NFFALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQLLDMMTD 219
C IL R V L + + + +LT D++ ++
Sbjct: 266 --------CKILLT-----TRFKQVTDFLS---AATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 220 YVQLAKEGKDKEA 232
Y+ + +E
Sbjct: 310 YLDCRPQDLPREV 322
Score = 35.2 bits (80), Expect = 0.026
Identities = 23/217 (10%), Positives = 70/217 (32%), Gaps = 69/217 (31%)
Query: 13 FHQLDILDQ------SSIHKLHDDIQTQ-------HGGLDLLVNNAGIYRDTAPGSFGQR 59
H+ ++++ SI ++ +++ + H +V++ I +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPP 467
Query: 60 AETTLATNFFALVTVCHILFPLLRPHARVVNVASKLGML------YNVPSQELRQTLFNE 113
+F HI H + + ++ + + Q++R
Sbjct: 468 YL----DQYFY----SHIGH-----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 114 SLTEDQLLDMMTD---YVQY---NGP-LDKILDTAMDTAPGSFGQRAETTLATNFFALVT 166
+ + +L+ + Y Y N P +++++ +D F + E L
Sbjct: 515 NASGS-ILNTLQQLKFYKPYICDNDPKYERLVNAILD-----FLPKIEENL--------- 559
Query: 167 VCHILFPLLRPHARVVNVA--SKLGMLYNVPSQELRQ 201
+ + ++ +A ++ ++ + +Q
Sbjct: 560 -------ICSKYTDLLRIALMAEDEAIFE---EAHKQ 586
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 31.9 bits (73), Expect = 0.23
Identities = 17/146 (11%), Positives = 38/146 (26%), Gaps = 26/146 (17%)
Query: 103 SQELRQTLFNESLTEDQLLDMMTDYVQYNGPLDKILDTAMDTAPGS-----FGQRAETTL 157
++ + + F +S+ + +++ TD + P + + F + ++
Sbjct: 377 TKAMHEKYFKKSVDMEGYIELCTDS-YFMYPAISLAIKRARSNGAPVYLYQFSFDGDYSV 435
Query: 158 ATNFF--ALVTVCHILFPLLRPHARVVNVASKLGMLYNVPSQELRQTLFNESLTEDQLLD 215
H L ++ S F +D +
Sbjct: 436 FREVNHLNFEGAGH---------------IEDLTYVFRTNSMLGGHASFPPHDKDDHMKY 480
Query: 216 MMTDY-VQLAKEGK--DKEAGWPEFS 238
MT + K WPE
Sbjct: 481 WMTSFITNFMKYSNPVTDAKLWPEVR 506
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.31
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 24/49 (48%)
Query: 20 DQSSIHKLHDDIQTQHGGLDLLVNNAGIYR-DTAPGSFGQRAETTLATN 67
++ ++ KL ++ +Y D+AP LA
Sbjct: 18 EKQALKKLQASLK--------------LYADDSAPA---------LAIK 43
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 29.9 bits (68), Expect = 0.82
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 7 NNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFG 57
N +Q+D+ + + I G +D + ++ G + +T+ F
Sbjct: 82 NQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGF- 140
Query: 58 QRAETTLATNFFALVTVCHILFPLLRPHARVV 89
+ ++L V H L+ +V
Sbjct: 141 ---LLAQDISSYSLTIVAHEAKKLMPEGGSIV 169
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 29.8 bits (68), Expect = 1.0
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 7 NNNNVRFHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFG 57
+ N+ D+ + + I I+ Q G + + + G Y +T F
Sbjct: 57 DRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGF- 115
Query: 58 QRAETTLATNFFALVTVCHILFPLLRPHARVV 89
+ ++L V P++ +V
Sbjct: 116 ---LLAHNISSYSLTAVVKAARPMMTEGGSIV 144
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 29.8 bits (68), Expect = 1.1
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFGQRAETT 63
+ D+ + L ++ GGLD LV+ G Y DT +
Sbjct: 62 LFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDW----LLA 117
Query: 64 LATNFFALVTVCHILFPLLRPHARVV 89
L + ++LV V PLLR +V
Sbjct: 118 LEVSAYSLVAVARRAEPLLREGGGIV 143
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 29.5 bits (67), Expect = 1.3
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFGQRAETT 63
++LD+ + L++ ++ G LD +V++ G +T+ +F T
Sbjct: 60 VYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAF----NTA 115
Query: 64 LATNFFALVTVCHILFPLLRPHARVV 89
+ + ++L+ + + L PLL A V+
Sbjct: 116 MEISVYSLIELTNTLKPLLNNGASVL 141
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 27.9 bits (63), Expect = 4.0
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIY--RDTAPGSFGQRAETTLATNF-- 68
Q D+ + +SI + ++ D V++ G + D G + F
Sbjct: 63 VLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIG-FAPGDQLDGDY---VNAVTREGFKI 118
Query: 69 ------FALVTVCHILFPLLRPHARVV 89
++ V + +L P + ++
Sbjct: 119 AHDISSYSFVAMAKACRSMLNPGSALL 145
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 28.0 bits (63), Expect = 4.1
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFGQRAETT 63
+ D+ I L ++ G LD++V++ G DT+ F +
Sbjct: 75 VVKCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGF----KIA 130
Query: 64 LATNFFALVTVCHILFPLLR 83
+ + ++L+ + L PL+
Sbjct: 131 MDISVYSLIALTRELLPLME 150
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 28.0 bits (63), Expect = 4.1
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFGQRAETT 63
D+ D S+ + + + G LD +V+ G Y DT+ G+F T+
Sbjct: 84 TVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNF----LTS 139
Query: 64 LATNFFALVTVCHILFPLLRPHARVV 89
+ + ++ + PL+ ++
Sbjct: 140 MHISCYSFTYIASKAEPLMTNGGSIL 165
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 28.0 bits (63), Expect = 4.2
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNN---------AGIYRDTAPGSFGQRAETT 63
D+ D +SI + + ++ + G LD LV+ G Y DT+ +F T
Sbjct: 85 AGHCDVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANF----TNT 140
Query: 64 LATNFFALVTVCHILFPLLRPHARVV 89
+ + ++L V L+ ++
Sbjct: 141 MLISVYSLTAVSRRAEKLMADGGSIL 166
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 27.6 bits (62), Expect = 5.2
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 13 FHQLDILDQSSIHKLHDDIQTQHGGLDLLVNNAGIY--RDTAPGSFGQRAETTLATNF-- 68
D+ D + I L ++T LD LV++ G + R+ G F + NF
Sbjct: 68 VFPCDVADDAQIDALFASLKTHWDSLDGLVHSIG-FAPREAIAGDF---LDGLTRENFRI 123
Query: 69 ------FALVTVCHILFPLLRPHARVV 89
++ + P+L A ++
Sbjct: 124 AHDISAYSFPALAKAALPMLSDDASLL 150
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 27.3 bits (61), Expect = 6.6
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 5 KNNNNNVRFHQLDILDQSSIHKL 27
+ + ++F LD+ ++ I +
Sbjct: 35 QRDTGGIKFITLDVSNRDEIDRA 57
>3khk_A Type I restriction-modification system methylation subunit;
structural genomics, PSI-2, protein structure
initiative; 2.55A {Methanosarcina mazei}
Length = 544
Score = 27.4 bits (61), Expect = 7.4
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 36/112 (32%)
Query: 207 SLTEDQLLDMMTDYVQLA----------KEGKDKEAGWPEFSYSVSKLGVAKLS-----F 251
S +DQ D+ D+V + E + W + ++ +
Sbjct: 319 SFLDDQHPDLRADFV-MTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAW 377
Query: 252 IQH--ATLSKDKRRPDIIVNPVHPGYVNTDLTEHKGVL---TPEQGKIRQKI 298
+ H L+ ++ + G + T +G+IR+ +
Sbjct: 378 MLHMLYHLAPTGSMA--LLLA-N------------GSMSSNTNNEGEIRKTL 414
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 27.1 bits (61), Expect = 7.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 7 NNNNVRFHQLDILDQSSIHKLHDDIQ 32
NV LDI+D + K+ DI+
Sbjct: 49 KLPNVEMISLDIMDSQRVKKVISDIK 74
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 26.8 bits (60), Expect = 9.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 15 QLDILDQSSIHKLHDDIQTQHGGLDLLV 42
D++ I L ++ GLD +V
Sbjct: 81 PCDVISDQEIKDLFVELGKVWDGLDAIV 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,613,969
Number of extensions: 265829
Number of successful extensions: 1165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 395
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)