Query psy2267
Match_columns 462
No_of_seqs 240 out of 2267
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:20:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356|consensus 100.0 5E-90 1.1E-94 707.9 29.8 398 16-455 11-408 (550)
2 PLN03167 Chaperonin-60 beta su 100.0 8.9E-88 1.9E-92 728.3 40.2 396 17-455 51-448 (600)
3 PRK12852 groEL chaperonin GroE 100.0 1E-86 2.2E-91 716.4 41.6 394 20-455 1-394 (545)
4 PRK14104 chaperonin GroEL; Pro 100.0 3.1E-86 6.7E-91 711.6 40.9 392 22-455 3-394 (546)
5 PTZ00114 Heat shock protein 60 100.0 3.6E-85 7.8E-90 705.4 42.9 397 18-455 10-406 (555)
6 TIGR02348 GroEL chaperonin Gro 100.0 6E-84 1.3E-88 692.0 42.3 391 23-455 2-392 (524)
7 PRK12849 groEL chaperonin GroE 100.0 1.4E-83 3.1E-88 690.4 42.6 393 21-455 1-393 (542)
8 PRK00013 groEL chaperonin GroE 100.0 1.4E-83 3E-88 690.5 42.1 393 21-455 1-393 (542)
9 PRK12850 groEL chaperonin GroE 100.0 2E-83 4.4E-88 690.0 41.5 393 21-455 2-394 (544)
10 CHL00093 groEL chaperonin GroE 100.0 2.6E-83 5.7E-88 687.8 40.9 392 21-455 1-393 (529)
11 PRK12851 groEL chaperonin GroE 100.0 5.5E-83 1.2E-87 686.2 41.1 393 21-455 2-394 (541)
12 cd03344 GroEL GroEL_like type 100.0 4.9E-82 1.1E-86 676.4 42.6 391 23-455 1-391 (520)
13 TIGR02339 thermosome_arch ther 100.0 3.3E-66 7.2E-71 555.5 36.2 356 23-411 9-421 (519)
14 cd03343 cpn60 cpn60 chaperonin 100.0 5.8E-66 1.2E-70 553.6 36.0 354 24-410 9-417 (517)
15 COG0459 GroL Chaperonin GroEL 100.0 7.7E-68 1.7E-72 563.6 16.0 366 21-455 2-378 (524)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 4.3E-65 9.3E-70 547.8 35.8 354 24-410 21-431 (532)
17 cd03338 TCP1_delta TCP-1 (CTT 100.0 3.7E-65 8E-70 547.1 35.2 358 25-410 3-416 (515)
18 cd03339 TCP1_epsilon TCP-1 (CT 100.0 5.5E-65 1.2E-69 546.8 36.3 354 24-410 17-427 (526)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.7E-65 1.5E-69 540.8 31.9 339 24-410 6-383 (484)
20 TIGR02342 chap_CCT_delta T-com 100.0 3.2E-64 6.8E-69 539.8 36.1 359 24-410 3-417 (517)
21 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.8E-64 6.1E-69 541.4 34.1 359 25-410 3-418 (527)
22 TIGR02347 chap_CCT_zeta T-comp 100.0 5E-64 1.1E-68 538.9 35.5 353 24-411 10-427 (531)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.1E-63 6.6E-68 533.0 37.1 349 25-410 11-419 (522)
24 TIGR02340 chap_CCT_alpha T-com 100.0 2.7E-63 5.9E-68 534.6 33.8 360 24-410 6-422 (536)
25 TIGR02344 chap_CCT_gamma T-com 100.0 4.3E-63 9.4E-68 532.1 34.3 354 24-410 10-421 (525)
26 TIGR02346 chap_CCT_theta T-com 100.0 3.6E-63 7.7E-68 532.8 31.6 351 25-410 12-418 (531)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.7E-62 8.1E-67 523.7 37.0 354 24-411 7-415 (517)
28 TIGR02345 chap_CCT_eta T-compl 100.0 2.3E-62 4.9E-67 526.0 34.5 349 24-410 12-420 (522)
29 PTZ00212 T-complex protein 1 s 100.0 1.6E-61 3.4E-66 520.5 36.9 356 23-412 15-428 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.7E-61 3.8E-66 514.3 32.4 330 24-410 10-380 (480)
31 cd00309 chaperonin_type_I_II c 100.0 8E-61 1.7E-65 507.6 34.5 331 24-411 2-367 (464)
32 TIGR02341 chap_CCT_beta T-comp 100.0 4.1E-60 8.8E-65 507.9 37.0 353 24-410 8-415 (519)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.3E-59 4.9E-64 497.1 34.6 328 27-410 5-370 (472)
34 KOG0358|consensus 100.0 1.6E-58 3.4E-63 455.8 24.0 366 23-416 19-440 (534)
35 KOG0361|consensus 100.0 1.1E-57 2.5E-62 450.3 20.9 352 22-410 12-423 (543)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-53 2.3E-58 454.0 31.8 338 42-412 1-387 (485)
37 KOG0362|consensus 100.0 1.5E-53 3.1E-58 432.9 28.3 350 29-413 25-424 (537)
38 KOG0363|consensus 100.0 4E-53 8.6E-58 415.9 22.9 347 23-410 11-419 (527)
39 KOG0360|consensus 100.0 5.6E-51 1.2E-55 411.7 21.2 355 24-411 13-429 (545)
40 KOG0364|consensus 100.0 9.2E-48 2E-52 385.3 15.3 369 14-415 3-426 (527)
41 KOG0359|consensus 100.0 1E-42 2.2E-47 348.6 13.6 346 29-408 16-415 (520)
42 KOG0357|consensus 100.0 1.3E-39 2.9E-44 317.9 13.0 255 23-411 21-296 (400)
43 cd03333 chaperonin_like chaper 99.9 2.8E-23 6.1E-28 198.1 17.2 177 161-379 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 2.3E-22 5.1E-27 198.4 16.9 192 175-384 21-258 (261)
45 COG0459 GroL Chaperonin GroEL 99.4 6.9E-12 1.5E-16 134.8 13.9 154 229-410 218-414 (524)
46 KOG0230|consensus 98.9 4.4E-09 9.6E-14 120.2 11.4 185 177-379 337-555 (1598)
47 TIGR02345 chap_CCT_eta T-compl 97.2 4.1E-05 8.9E-10 83.1 -2.0 59 262-321 246-313 (522)
48 PRK12849 groEL chaperonin GroE 92.6 0.1 2.2E-06 57.2 3.7 34 365-410 394-428 (542)
49 cd03344 GroEL GroEL_like type 92.0 0.11 2.4E-06 56.5 3.1 34 365-410 392-426 (520)
50 PTZ00114 Heat shock protein 60 91.6 0.14 3E-06 56.4 3.2 34 365-410 407-441 (555)
51 PRK12850 groEL chaperonin GroE 91.0 0.16 3.5E-06 55.6 3.0 34 365-410 395-429 (544)
52 TIGR02348 GroEL chaperonin Gro 90.4 0.2 4.3E-06 54.7 3.0 33 365-409 393-426 (524)
53 PRK00013 groEL chaperonin GroE 90.2 0.2 4.2E-06 55.0 2.7 34 365-410 394-428 (542)
54 PRK12852 groEL chaperonin GroE 90.0 0.24 5.1E-06 54.4 3.2 35 365-411 395-430 (545)
55 PRK14104 chaperonin GroEL; Pro 89.8 0.23 5E-06 54.5 2.9 34 365-410 395-429 (546)
56 PLN03167 Chaperonin-60 beta su 88.5 0.27 5.8E-06 54.6 2.3 35 365-411 449-484 (600)
57 CHL00093 groEL chaperonin GroE 88.4 0.34 7.4E-06 52.9 3.0 34 365-410 394-428 (529)
58 PRK12851 groEL chaperonin GroE 88.2 0.36 7.8E-06 52.9 3.0 35 365-411 395-430 (541)
59 PTZ00212 T-complex protein 1 s 85.4 0.24 5.2E-06 54.1 -0.2 66 182-247 178-247 (533)
60 TIGR02341 chap_CCT_beta T-comp 82.8 0.53 1.1E-05 51.3 1.0 66 182-248 167-237 (519)
61 PRK13600 putative ribosomal pr 34.6 1.9E+02 0.0041 23.7 6.8 55 254-318 20-74 (84)
62 PF10805 DUF2730: Protein of u 32.9 67 0.0015 27.3 4.1 36 404-439 48-83 (106)
63 PF10410 DnaB_bind: DnaB-helic 26.1 1.4E+02 0.0031 21.7 4.5 38 398-435 16-53 (59)
64 PRK14736 atpC F0F1 ATP synthas 22.9 1.5E+02 0.0032 26.4 4.6 39 399-437 90-128 (133)
65 PF06102 DUF947: Domain of unk 22.7 1.8E+02 0.004 26.9 5.4 58 373-435 29-93 (168)
66 PF04822 Takusan: Takusan; In 22.0 2.3E+02 0.0051 23.3 5.2 36 399-436 12-48 (84)
67 PF01230 HIT: HIT domain; Int 21.3 99 0.0021 25.2 3.0 35 27-61 43-77 (98)
68 PRK06683 hypothetical protein; 21.2 3.9E+02 0.0085 21.6 6.4 55 255-319 19-73 (82)
69 PF01985 CRS1_YhbY: CRS1 / Yhb 20.8 2E+02 0.0044 23.2 4.7 67 253-321 6-74 (84)
70 PRK13601 putative L7Ae-like ri 20.0 4.3E+02 0.0094 21.4 6.4 54 255-318 16-69 (82)
No 1
>KOG0356|consensus
Probab=100.00 E-value=5e-90 Score=707.91 Aligned_cols=398 Identities=73% Similarity=1.098 Sum_probs=390.0
Q ss_pred HHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHH
Q psy2267 16 LLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQD 95 (462)
Q Consensus 16 ~~~~~~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~ 95 (462)
..+| ++|++.||.++|..+++|++.|||+|.+||||+|||++|++.+|+|+|||||+|++++++++|+|+|.||+|+++
T Consensus 11 ~~~r-~ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~ 89 (550)
T KOG0356|consen 11 KCVR-YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQD 89 (550)
T ss_pred cccc-cccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHH
Confidence 3444 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCc
Q psy2267 96 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDK 175 (462)
Q Consensus 96 ~a~~q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~ 175 (462)
++.++|+.+||||||+++||++|..++.+-+.+|.+|.+|++|+.+|++.+++.|+++++||++++++.+||++|+|+|.
T Consensus 90 va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~ 169 (550)
T KOG0356|consen 90 VANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDK 169 (550)
T ss_pred HHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHH
Q psy2267 176 AVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPA 255 (462)
Q Consensus 176 ~i~~li~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~ 255 (462)
.++++|++|+.++|++|+|++++|+++.||+++++||.||+||+||||+++.+..+++|++|.+|++++||+++++|+|.
T Consensus 170 ~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~ 249 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPA 249 (550)
T ss_pred HHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCC
Q psy2267 256 LELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQAT 335 (462)
Q Consensus 256 le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~ 335 (462)
||...+..+||+|+++||+.++|.+|++|++++++||||||+|+||+.|+..|.|||.+|||+++.++..-++++..+++
T Consensus 250 LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~ 329 (550)
T KOG0356|consen 250 LELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLE 329 (550)
T ss_pred HHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988433889999999
Q ss_pred CCceeeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Q psy2267 336 DLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIE 415 (462)
Q Consensus 336 ~LG~a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~ 415 (462)
+||.|.++.++++++.++. |.++++++..|++|++..++
T Consensus 330 dLG~~~evvvtkd~t~ll~-----------------------------------------g~~~~~~v~~rIeqik~~~e 368 (550)
T KOG0356|consen 330 DLGEVGEVVVTKDDTMLLK-----------------------------------------GKGNKAQVEGRIEQIKEMIE 368 (550)
T ss_pred hcCcceeEEEecCcceeeC-----------------------------------------CCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 416 ATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 416 ~~~~~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
.+.++|++++|+||+++|+||+|||+|||.||+|+.|||+
T Consensus 369 ~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~ 408 (550)
T KOG0356|consen 369 ETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKD 408 (550)
T ss_pred hhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhh
Confidence 9999999999999999999999999999999999999997
No 2
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=8.9e-88 Score=728.33 Aligned_cols=396 Identities=45% Similarity=0.739 Sum_probs=384.7
Q ss_pred HHhhhhhhhcccH--HHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHH
Q psy2267 17 LRRAYAKDVRFGP--EVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQ 94 (462)
Q Consensus 17 ~~~~~~k~~~~g~--~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~ 94 (462)
+++.|+|++.||+ ++|+.+++|++.|+++|+|||||+||||||++++|+|+|||||+||+|+|+++||++|++|+|++
T Consensus 51 ~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~ 130 (600)
T PLN03167 51 PKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVR 130 (600)
T ss_pred chhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHH
Confidence 5667899999999 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCC
Q psy2267 95 DVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGD 174 (462)
Q Consensus 95 ~~a~~q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~ 174 (462)
++|++||+++||||||++|||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++ ++|.+||++|++++
T Consensus 131 ~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~ 209 (600)
T PLN03167 131 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNN 209 (600)
T ss_pred HHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999976 67999999999999
Q ss_pred chhhhHHHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHH
Q psy2267 175 KAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIP 254 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~ 254 (462)
+.||+|+++|+.++|++|.|.+++|++++|++++++||+|++||.||||+++.++|+..++||+|++++.+|++++++++
T Consensus 210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~ 289 (600)
T PLN03167 210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289 (600)
T ss_pred HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence 99999999999999999999999999999877999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCC
Q psy2267 255 ALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQA 334 (462)
Q Consensus 255 ~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~ 334 (462)
+++.+.+.|+||||++++|++++|++|+.||+++..+|+|||+|+||++++++|+|||++|||++++++ .+++++++++
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~-~~~~l~~~~~ 368 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREE-VGLSLDKVGK 368 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEeccc-ccCCcccCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999966 6778999999
Q ss_pred CCCceeeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Q psy2267 335 TDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQI 414 (462)
Q Consensus 335 ~~LG~a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~ 414 (462)
++||+|++|++++++|++++ +.|++|.+..|+.+++.++
T Consensus 369 ~~LG~a~~v~~~~~~t~iig-----------------------------------------~~~~~~~i~~r~~~i~~~~ 407 (600)
T PLN03167 369 EVLGTAAKVVLTKDTTTIVG-----------------------------------------DGSTQEAVNKRVAQIKNLI 407 (600)
T ss_pred HHCceeeEEEEecccceeeC-----------------------------------------CCccHHHHHHHHHHHHhhh
Confidence 99999999999999999999 9999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 415 EATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 415 ~~~~~~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
+.+.++|++++|++||++|+||+|+|+|||+|+.|++|+++
T Consensus 408 ~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er 448 (600)
T PLN03167 408 EAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKL 448 (600)
T ss_pred hccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-86 Score=716.42 Aligned_cols=394 Identities=56% Similarity=0.912 Sum_probs=382.4
Q ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhh
Q psy2267 20 AYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANN 99 (462)
Q Consensus 20 ~~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~ 99 (462)
+|+|++.||.++|..|++|+..|+++|+|||||+||||||+++.|+|+|||||+||+|+|+++||++||+|||++++|++
T Consensus 1 ~~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~ 80 (545)
T PRK12852 1 MAAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (545)
T ss_pred CCcchhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhh
Q psy2267 100 TNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGE 179 (462)
Q Consensus 100 q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~ 179 (462)
||+++||||||+++||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+++.+||++|+++++.+++
T Consensus 81 q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~ 160 (545)
T PRK12852 81 TNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGK 160 (545)
T ss_pred cCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHH
Q psy2267 180 LISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELA 259 (462)
Q Consensus 180 li~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i 259 (462)
++++|+.+++++|.|.++.|++..+++++++|+.|++||.+|||+++.+++++.++||+|++++.+++++++++|+++.+
T Consensus 161 li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i 240 (545)
T PRK12852 161 MIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAV 240 (545)
T ss_pred HHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHH
Confidence 99999999999999999999988667999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCce
Q psy2267 260 NSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS 339 (462)
Q Consensus 260 ~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~ 339 (462)
.+.|+||||++++|+++|+++|+.||++++++|+|||+|+||++|+++|+|||++|||++++++ .|.+++++++++||+
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~-~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 241 VQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISED-LGIKLENVTLKMLGR 319 (545)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecC-cCCCcCCCCHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975 677899999999999
Q ss_pred eeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy2267 340 VGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTS 419 (462)
Q Consensus 340 a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~ 419 (462)
|++|++++++++++. |.++++.+..|+++++.+++++.+
T Consensus 320 ~~~v~~~~~~~~~i~-----------------------------------------~~~~~~~i~~ri~~l~~~~~~~~~ 358 (545)
T PRK12852 320 AKKVVIDKENTTIVN-----------------------------------------GAGKKADIEARVGQIKAQIEETTS 358 (545)
T ss_pred CcEEEEEccEEEEEe-----------------------------------------CCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999899998 999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 420 DYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 420 ~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
+|++++|+||||||+|++|.|.|||+|+.+++|++.
T Consensus 359 ~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er 394 (545)
T PRK12852 359 DYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKD 394 (545)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Confidence 999999999999999999999999999999999765
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.1e-86 Score=711.61 Aligned_cols=392 Identities=58% Similarity=0.920 Sum_probs=380.7
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcc
Q psy2267 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101 (462)
Q Consensus 22 ~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~ 101 (462)
+|.+.||.++|..|++|+..|+++|++||||+||||||+++.|+|.|||||+||+|+|++++|||||+|+|++++|++||
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd 82 (546)
T PRK14104 3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSA 82 (546)
T ss_pred cceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhHH
Q psy2267 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELI 181 (462)
Q Consensus 102 ~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~li 181 (462)
+++||||||+||||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+++.+||++|+++|+.+|+++
T Consensus 83 ~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv 162 (546)
T PRK14104 83 DAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFL 162 (546)
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887889999999999999999999
Q ss_pred HHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHHh
Q psy2267 182 SDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261 (462)
Q Consensus 182 ~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~~ 261 (462)
++|+.++|++|.|.++.++++++++++++|++|++||.||||+++.+++++.++||+|++++.+++++++++|+++.+.+
T Consensus 163 ~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~ 242 (546)
T PRK14104 163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQ 242 (546)
T ss_pred HHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHH
Confidence 99999999999999998888877799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceee
Q psy2267 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVG 341 (462)
Q Consensus 262 ~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~ 341 (462)
.|+||||++++|+++|+++|..||++++++|+|||+|+||+.|+++|+|||++|||++++++ .+.+++++++++||+|+
T Consensus 243 ~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~-~~~~l~~~~~~~LG~a~ 321 (546)
T PRK14104 243 TGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISED-LGIKLENVTLQMLGRAK 321 (546)
T ss_pred hCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecC-CCCCcCcCCHHHCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999976 67779999999999999
Q ss_pred EEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCChH
Q psy2267 342 EIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDY 421 (462)
Q Consensus 342 ~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~~ 421 (462)
+|++++++++++. |.++++.+..|+++++.++++++++|
T Consensus 322 ~v~~~~~~~~~i~-----------------------------------------g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (546)
T PRK14104 322 KVMIDKENTTIVN-----------------------------------------GAGKKADIEARVAQIKAQIEETTSDY 360 (546)
T ss_pred EEEEcCCEEEEEe-----------------------------------------CCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999988899988 99999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 422 EREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 422 ~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
+|++|+||+|||+|++|.|.|||+|+.+++|++.
T Consensus 361 ~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r 394 (546)
T PRK14104 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKD 394 (546)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.6e-85 Score=705.39 Aligned_cols=397 Identities=58% Similarity=0.931 Sum_probs=383.0
Q ss_pred HhhhhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHH
Q psy2267 18 RRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVA 97 (462)
Q Consensus 18 ~~~~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a 97 (462)
.+.|+++..+|++++..|++||..|+++|+|||||+||||||++++|+|+|||||+||+|+|+++||+|||+|+|++++|
T Consensus 10 ~~~~~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a 89 (555)
T PTZ00114 10 YRFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVA 89 (555)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchh
Q psy2267 98 NNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAV 177 (462)
Q Consensus 98 ~~q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i 177 (462)
++||+++||||||+||||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.++|.++|++|+++++.+
T Consensus 90 ~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l 169 (555)
T PTZ00114 90 SKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEI 169 (555)
T ss_pred HhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred hhHHHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHH
Q psy2267 178 GELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALE 257 (462)
Q Consensus 178 ~~li~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le 257 (462)
++++++|+.+++++|.|.+++|++++|++++++|++|+++|.||||+++.++++..++||+|+++|.+|+++++++++++
T Consensus 170 ~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le 249 (555)
T PTZ00114 170 GSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILE 249 (555)
T ss_pred HHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999856999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCC
Q psy2267 258 LANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDL 337 (462)
Q Consensus 258 ~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~L 337 (462)
++.+.|+||||++++|+++|+++|+.|+++++++|+|||.|+||++++++|+|||++|||+++++...+..++++++++|
T Consensus 250 ~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~L 329 (555)
T PTZ00114 250 HAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSML 329 (555)
T ss_pred HHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999996545667788999999
Q ss_pred ceeeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy2267 338 GSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEAT 417 (462)
Q Consensus 338 G~a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~ 417 (462)
|+|++|++++++++++. |.|+++.|..|+++++.+++.+
T Consensus 330 G~a~~v~~~~~~~~~~~-----------------------------------------~~~~~~~i~~r~~~l~~~~~~~ 368 (555)
T PTZ00114 330 GSAKKVTVTKDETVILT-----------------------------------------GGGDKAEIKERVELLRSQIERT 368 (555)
T ss_pred CCCceEEEEeceEEEEe-----------------------------------------CCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999998889988 9999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 418 TSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 418 ~~~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
.++|+|++|+||++||+|+++.|.|||+|+.+++|+++
T Consensus 369 ~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r 406 (555)
T PTZ00114 369 TSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKD 406 (555)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999775
No 6
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=6e-84 Score=692.04 Aligned_cols=391 Identities=58% Similarity=0.901 Sum_probs=379.7
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccc
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~ 102 (462)
|.+.||.++|..|++|+..++++|+|||||+||||||+++.|+|+|||||+||+|+|+++||++|++|+|++++|++||+
T Consensus 2 ~~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhHHH
Q psy2267 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELIS 182 (462)
Q Consensus 103 ~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~li~ 182 (462)
++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.++|++|++++++++++++
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999998999999999
Q ss_pred HHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHHhc
Q psy2267 183 DAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSK 262 (462)
Q Consensus 183 ~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~~~ 262 (462)
+|+..++++|.|.++.|++..|++++++|++|+++|.+|||+++.++++..++||+|++++.++++++++.++++.+.+.
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~ 241 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQS 241 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHh
Confidence 99999999898888889988778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeE
Q psy2267 263 RKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGE 342 (462)
Q Consensus 263 g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~ 342 (462)
|+||||++++|+++|+++|+.|++++.++|++||+|+||++|+++|+|||++|||++++++ .+++++++++++||+|++
T Consensus 242 g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~-~~~~~~~~~~~~LG~~~~ 320 (524)
T TIGR02348 242 GKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEE-LGLKLEEVTLDDLGKAKK 320 (524)
T ss_pred CcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEeccc-ccCCcCcCCHHHCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999976 677899999999999999
Q ss_pred EEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCChHH
Q psy2267 343 IVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYE 422 (462)
Q Consensus 343 v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~~~ 422 (462)
|++++++++++. |.++++.+..|+++++.+++++.++||
T Consensus 321 v~~~~~~~~~i~-----------------------------------------~~~~~~~~~~ri~~l~~~~~~~~~~~~ 359 (524)
T TIGR02348 321 VTVDKDNTTIVE-----------------------------------------GAGDKAAIKARVAQIKAQIEETTSDYD 359 (524)
T ss_pred EEEeecEEEEEc-----------------------------------------CCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999998888888 989999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 423 REKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 423 ~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
|++|+||++||+|++++|.+||+|+.+++|++.
T Consensus 360 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er 392 (524)
T TIGR02348 360 REKLQERLAKLAGGVAVIKVGAATETEMKEKKL 392 (524)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence 999999999999999999999999999999765
No 7
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-83 Score=690.40 Aligned_cols=393 Identities=57% Similarity=0.909 Sum_probs=381.0
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
|+|.+.||++++..|++|+..++++|+|||||+||||||+++.|+|+|||||+||+++|+++||+||++|+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~q 80 (542)
T PRK12849 1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKT 80 (542)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhH
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL 180 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~l 180 (462)
|+++||||||+++||++||+++.+++++|+||..|++||++|++.++++|+++++|+++.+++.++|++|+++++.++++
T Consensus 81 d~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 160 (542)
T PRK12849 81 NDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGEL 160 (542)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHH
Q psy2267 181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN 260 (462)
Q Consensus 181 i~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~ 260 (462)
+++|+..++++|.+.++.|++++|++++++|++|+++|.+|||.++.++++..++||+|++++.++++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~ 240 (542)
T PRK12849 161 IAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA 240 (542)
T ss_pred HHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHH
Confidence 99999999988888889999998779999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCcee
Q psy2267 261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSV 340 (462)
Q Consensus 261 ~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a 340 (462)
+.|+||||++++|+++|+++|..|+++++++|++||+|+|+++|+++|+|||.+|||++++++ .+.+++++++++||+|
T Consensus 241 ~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~-~~~~~~~~~~~~LG~~ 319 (542)
T PRK12849 241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISED-LGLKLEEVTLDDLGRA 319 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEeccc-ccCCcccCCHHHCcee
Confidence 999999999999999999999999999999999999999999999999999999999999965 5667899999999999
Q ss_pred eEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q psy2267 341 GEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSD 420 (462)
Q Consensus 341 ~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~ 420 (462)
++|++++++++++. |.++++++..|+++++.+++++.++
T Consensus 320 ~~v~~~~~~~~~i~-----------------------------------------g~~~~~~i~~r~~~l~~~~~~~~~~ 358 (542)
T PRK12849 320 KRVTITKDNTTIVD-----------------------------------------GAGDKEAIEARVAQIRRQIEETTSD 358 (542)
T ss_pred eEEEEeeeeEEEEe-----------------------------------------CCCCHHHHHHHHHHHHHHHHhcCcH
Confidence 99999988888888 9899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 421 YEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 421 ~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
|++++|+||++||+|+++.|.+||+|+.+++|+++
T Consensus 359 ~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er 393 (542)
T PRK12849 359 YDREKLQERLAKLAGGVAVIKVGAATEVELKERKD 393 (542)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999775
No 8
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-83 Score=690.53 Aligned_cols=393 Identities=58% Similarity=0.914 Sum_probs=379.3
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
|+|.+.||.++|..|++|+..++++|+|||||+||||||+++.|+|+|||||+||+|+|+++||+||++|+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~q 80 (542)
T PRK00013 1 MAKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 80 (542)
T ss_pred CCchhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhH
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL 180 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~l 180 (462)
|+++||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|++|+++++.++++
T Consensus 81 d~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~l 160 (542)
T PRK00013 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKL 160 (542)
T ss_pred CcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHH
Q psy2267 181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN 260 (462)
Q Consensus 181 i~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~ 260 (462)
+++|+..++++|.|.++.+.+..+++++++|++|++||.+|||.++.++++..++||+|+++|.++++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~ 240 (542)
T PRK00013 161 IAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVA 240 (542)
T ss_pred HHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHH
Confidence 99999999988888887666566679999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCcee
Q psy2267 261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSV 340 (462)
Q Consensus 261 ~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a 340 (462)
+.|+||||++++|+++|+++|+.|++++.++|++||+|+||++|+++|+|||.+|||++++++ .|.+++++++++||+|
T Consensus 241 ~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~-~~~~~~~~~~~~LG~~ 319 (542)
T PRK00013 241 QSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEE-LGLKLEDATLEDLGQA 319 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEeccc-ccCCcccCCHHHCCee
Confidence 999999999999999999999999999999999999999999999999999999999999976 6778999999999999
Q ss_pred eEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q psy2267 341 GEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSD 420 (462)
Q Consensus 341 ~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~ 420 (462)
+.|++++++++++. |.++++.+..|+++++.+++.+.++
T Consensus 320 ~~v~~~~~~~~~i~-----------------------------------------~~~~~~~i~~ri~~l~~~~~~~~~~ 358 (542)
T PRK00013 320 KKVVVTKDNTTIVD-----------------------------------------GAGDKEAIKARVAQIKAQIEETTSD 358 (542)
T ss_pred eEEEEecCEEEEEe-----------------------------------------CCCCHHHHHHHHHHHHHHHhhcCCH
Confidence 99999988888988 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 421 YEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 421 ~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
|||++|+||++||+|+++.|.+||+|+.+++|+++
T Consensus 359 ~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er 393 (542)
T PRK00013 359 YDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKD 393 (542)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-83 Score=689.96 Aligned_cols=393 Identities=56% Similarity=0.913 Sum_probs=379.9
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
|+|.+.||+++|..|++|+..|+++|+|||||+||||||+++.|+++|||||+||+++|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~q 81 (544)
T PRK12850 2 AAKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKT 81 (544)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhH
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL 180 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~l 180 (462)
|+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.++|.++|++|+++++.++++
T Consensus 82 d~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~l 161 (544)
T PRK12850 82 NDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEM 161 (544)
T ss_pred cchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHH
Q psy2267 181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN 260 (462)
Q Consensus 181 i~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~ 260 (462)
+++|+.+++++|.|.++.+....+++++++|++|+++|.+|||+++.++++..++||+|+++|.++++++++.++++++.
T Consensus 162 v~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~ 241 (544)
T PRK12850 162 IAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVV 241 (544)
T ss_pred HHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHH
Confidence 99999999988888887766666789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCcee
Q psy2267 261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSV 340 (462)
Q Consensus 261 ~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a 340 (462)
+.|+||||++++|+++|+++|+.|+++++++++|||+|+||++|+++|+|||++|||++++++ .+++++++++++||+|
T Consensus 242 ~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~-~~~~~~~~~~~~LG~~ 320 (544)
T PRK12850 242 QSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISED-LGIKLENVTLDMLGRA 320 (544)
T ss_pred HhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccc-cCCCcccCCHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999966 6778999999999999
Q ss_pred eEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q psy2267 341 GEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSD 420 (462)
Q Consensus 341 ~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~ 420 (462)
++|++++++++++. |.++++.+..|+++++.+++++.++
T Consensus 321 ~~v~~~~~~~~~i~-----------------------------------------g~~~~~~i~~ri~~l~~~~~~~~~~ 359 (544)
T PRK12850 321 KRVLITKENTTIID-----------------------------------------GAGDKKNIEARVKQIRAQIEETTSD 359 (544)
T ss_pred cEEEEEeeeEEEEe-----------------------------------------CCCCHHHHHHHHHHHHHHHHhcccH
Confidence 99999998888888 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 421 YEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 421 ~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
|+|++|+||++||+|+++.|.|||+|+.+++|+++
T Consensus 360 ~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er 394 (544)
T PRK12850 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKD 394 (544)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999999999775
No 10
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.6e-83 Score=687.78 Aligned_cols=392 Identities=47% Similarity=0.796 Sum_probs=375.6
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
|+|.+.||.++|+++++||..++++|+|||||+||||||+++.|+|+|||||+||+|+|+++||++|++++|++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~ 80 (529)
T CHL00093 1 MSKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKT 80 (529)
T ss_pred CCceeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhH
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL 180 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~l 180 (462)
++++||||||++|||++||++|.+++++|+||..|++||++|.+.+++.|+++++|+++.++|.+||++|+++++.||++
T Consensus 81 ~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~l 160 (529)
T CHL00093 81 NDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSM 160 (529)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCH-HhHHHHHHHH
Q psy2267 181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSI-QSIIPALELA 259 (462)
Q Consensus 181 i~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~-~~i~~~le~i 259 (462)
+++|+.+++++|.|.++.|+..++++++++|++|+++|.||||++++++|.+.++||+|++++.+++.. ++++++++.+
T Consensus 161 v~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i 240 (529)
T CHL00093 161 IADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQV 240 (529)
T ss_pred HHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHH
Confidence 999999999989888888877667799999999999999999999999999999999999999999887 7889999999
Q ss_pred HhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCce
Q psy2267 260 NSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS 339 (462)
Q Consensus 260 ~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~ 339 (462)
.+.++||||++++|+++++++|+.||++++.+|+|||.|++|++++++|+|||++|||++++++ .|.+++++++++||+
T Consensus 241 ~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~-~~~~~~~~~~~~LG~ 319 (529)
T CHL00093 241 TKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITED-AGLSLETIQLDLLGQ 319 (529)
T ss_pred HhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEeccc-ccCCcCCCCHHHCCc
Confidence 9999999999999999999999999999989999999999999999999999999999999976 677899999999999
Q ss_pred eeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy2267 340 VGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTS 419 (462)
Q Consensus 340 a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~ 419 (462)
|++|++++++++++. +|+++.|..|+++++.+++.+++
T Consensus 320 ~~~v~~~~~~~~~~~------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~ 357 (529)
T CHL00093 320 ARRIIVTKDSTTIIA------------------------------------------DGNEEQVKARCEQLRKQIEIADS 357 (529)
T ss_pred ceEEEEecCEEEEEe------------------------------------------cCcHHHHHHHHHHHHHHhhhcCC
Confidence 999999987766664 46789999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 420 DYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 420 ~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
+|+|++|+|||+||+|++++|.+||+|+.+++|++.
T Consensus 358 ~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er 393 (529)
T CHL00093 358 SYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKL 393 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 11
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.5e-83 Score=686.22 Aligned_cols=393 Identities=56% Similarity=0.898 Sum_probs=378.0
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
|++.+.||++++..|++|+..++++|+|||||+||||||+++.|+|.|||||+||+|+|+++||++|++|+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 81 (541)
T PRK12851 2 AAKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKT 81 (541)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhH
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL 180 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~l 180 (462)
|+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.+||++|++.++.++++
T Consensus 82 d~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~l 161 (541)
T PRK12851 82 NDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRL 161 (541)
T ss_pred hHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999889999999
Q ss_pred HHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHH
Q psy2267 181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN 260 (462)
Q Consensus 181 i~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~ 260 (462)
+++|+..++++|.|.++.+....+++++++|++|++||.+|||+++.++|+..++||+|+++|.++++++++.++++.+.
T Consensus 162 v~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~ 241 (541)
T PRK12851 162 VAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVV 241 (541)
T ss_pred HHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHH
Confidence 99999999988877776655555679999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCcee
Q psy2267 261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSV 340 (462)
Q Consensus 261 ~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a 340 (462)
+.|+||||++++|+++|+++|+.|+++++++|+|||+|+||++++++|+|||++|||++++++ .+++++++++++||+|
T Consensus 242 ~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~-~~~~~~~~~~~~LG~~ 320 (541)
T PRK12851 242 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISED-LGIKLENVTLEQLGRA 320 (541)
T ss_pred HhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccC-CCCCcCcCCHHHcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999976 6667899999999999
Q ss_pred eEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q psy2267 341 GEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSD 420 (462)
Q Consensus 341 ~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~ 420 (462)
++|++++++++++. |.++++++..|+++++.+++++.++
T Consensus 321 ~~v~~~~~~~~~i~-----------------------------------------~~~~~~~i~~ri~~l~~~~~~~~~~ 359 (541)
T PRK12851 321 KKVVVEKENTTIID-----------------------------------------GAGSKTEIEGRVAQIRAQIEETTSD 359 (541)
T ss_pred cEEEEEcceEEEEc-----------------------------------------CCCCHHHHHHHHHHHHHHHHhcCCH
Confidence 99999998888888 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 421 YEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 421 ~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
|+|++|+|||+||+|++++|.+||+|+.+++|+++
T Consensus 360 ~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er 394 (541)
T PRK12851 360 YDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKD 394 (541)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 12
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.9e-82 Score=676.37 Aligned_cols=391 Identities=61% Similarity=0.961 Sum_probs=378.8
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccc
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~ 102 (462)
|++.||.+++..|++|+..|+++|+|||||+||+|||++++|+|+|||||+||+|+|+++||++|++|+|++++|++||+
T Consensus 1 ~~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhHHH
Q psy2267 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELIS 182 (462)
Q Consensus 103 ~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~li~ 182 (462)
++||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+++.++|+||+++++.++++++
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~ 160 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIA 160 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHHhc
Q psy2267 183 DAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSK 262 (462)
Q Consensus 183 ~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~~~ 262 (462)
+|+..++++|.|.+++|++++|++++++|++|++||.+|||+++++++...++||+|++++..+++++++.++++++.+.
T Consensus 161 ~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~ 240 (520)
T cd03344 161 EAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240 (520)
T ss_pred HHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 99999998888999999999887899999999999999999999889999999999999999999999999999999999
Q ss_pred CCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeE
Q psy2267 263 RKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGE 342 (462)
Q Consensus 263 g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~ 342 (462)
|+||||++++|+++|+++|..|+++++++|++||+|++|++++++|+|||.+|||++++++ .+.+++++++++||+|++
T Consensus 241 ~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~-~~~~~~~~~~~~LG~~~~ 319 (520)
T cd03344 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEE-LGLKLEDVTLEDLGRAKK 319 (520)
T ss_pred CCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEeccc-ccCCcccCCHHHCCcceE
Confidence 9999999999999999999999999999999999999999999999999999999999976 566889999999999999
Q ss_pred EEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCChHH
Q psy2267 343 IVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYE 422 (462)
Q Consensus 343 v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~~~ 422 (462)
|++++++++++. |.++++.+..|+++++.+++++.++|+
T Consensus 320 v~~~~~~~~~i~-----------------------------------------~~~~~~~i~~ri~~l~~~~~~~~~~~~ 358 (520)
T cd03344 320 VVVTKDDTTIIG-----------------------------------------GAGDKAAIKARIAQIRKQIEETTSDYD 358 (520)
T ss_pred EEEeeceEEEEe-----------------------------------------CCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999998888888 888999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 423 REKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 423 ~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
|++|+||++||+|+++.|.+||+|+.+++|+++
T Consensus 359 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r 391 (520)
T cd03344 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKD 391 (520)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHH
Confidence 999999999999999999999999999999875
No 13
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.3e-66 Score=555.54 Aligned_cols=356 Identities=26% Similarity=0.388 Sum_probs=314.8
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccc
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~ 102 (462)
.+..+|.+++..|++||..++++++|||||+||||||+++.|+++|||||+||+|+|+++|| +|+|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~a~~qd~ 84 (519)
T TIGR02339 9 TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQDA 84 (519)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCH----HHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHcCCC------
Q psy2267 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGD------ 174 (462)
Q Consensus 103 ~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~--~~~l~~va~~s~~~~------ 174 (462)
++||||||+++||++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++. .+.|.++|+||+++|
T Consensus 85 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~ 164 (519)
T TIGR02339 85 EVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVT 164 (519)
T ss_pred HhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchh
Confidence 999999999999999999999999999999999999999999999999999999863 678999999999987
Q ss_pred -chhhhHHHHHHHHhcc---Cce---------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEe
Q psy2267 175 -KAVGELISDAMKRVGK---EGV---------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL 241 (462)
Q Consensus 175 -~~i~~li~~A~~~vg~---~g~---------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili 241 (462)
+.|++++++|+.++++ +|. |.+.+|++++| |++++|++|+++|.+|.|++..+++++.+.++++..
T Consensus 165 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~d-s~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~ 243 (519)
T TIGR02339 165 KDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDD-TELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEV 243 (519)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhc-ceeEeeEEEecCCCCCCCccccCCCcEEEEeccccc
Confidence 6799999999999985 563 34478999985 999999999999999988777666666666666555
Q ss_pred cccc------cCCHHhHHHHHH-----------HHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCc
Q psy2267 242 SESK------ISSIQSIIPALE-----------LANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNR 304 (462)
Q Consensus 242 ~d~k------i~s~~~i~~~le-----------~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~r 304 (462)
...+ +++++++.++++ .+++.|+||||++++|+++|+++|..+ +|++|+ +++
T Consensus 244 ~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~-----~v~ 312 (519)
T TIGR02339 244 EKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR-----RVK 312 (519)
T ss_pred cccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe-----cCC
Confidence 3322 678888877665 788899999999999999999999743 467765 677
Q ss_pred hhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------ee
Q psy2267 305 KATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SC 366 (462)
Q Consensus 305 k~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl 366 (462)
+++|+|||++|||++++ +++++++++||+|++|++.+ ++..++.|++| +.|||+ ++
T Consensus 313 ~~~L~rIa~~tGa~ii~------~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i 386 (519)
T TIGR02339 313 KSDIEKLARATGAKIVS------SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSI 386 (519)
T ss_pred HHHHHHHHHHhCCEEeC------chhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999 78899999999999999876 33445556664 588986 99
Q ss_pred chhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 367 EKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 367 ~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
+||||++|++++|+++|| |||+.| +++.+++++.
T Consensus 387 ~DAl~~~~~~~~~~~vvp-----------GGGa~e~~ls~~l~~~~ 421 (519)
T TIGR02339 387 QDALHVVASALEDGKVVA-----------GGGAVEIELALRLRSYA 421 (519)
T ss_pred HHHHHHHHHHhcCCCEee-----------CCCHHHHHHHHHHHHHh
Confidence 999999999999999999 999999 8888887653
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.8e-66 Score=553.61 Aligned_cols=354 Identities=26% Similarity=0.400 Sum_probs=312.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+..+|.+++..|++||..+++++++||||+||||||+++.|+++|||||+||+|+|+++|| +|+|++++|++||++
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~a~~q~~~ 84 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQDEE 84 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCH----HHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHcCCC------c
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISANGD------K 175 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~~------~ 175 (462)
+||||||+++||++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.+.+||++|+++| +
T Consensus 85 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~ 164 (517)
T cd03343 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKD 164 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999986 7889999999999987 7
Q ss_pred hhhhHHHHHHHHhccCce---------EEE--ecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEeccc
Q psy2267 176 AVGELISDAMKRVGKEGV---------ITV--KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSES 244 (462)
Q Consensus 176 ~i~~li~~A~~~vg~~g~---------I~v--~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ 244 (462)
.|++++++|+.++++++. |.+ .+|++++| |++++|++|+++|.||+|++..+++++.+.++++.....
T Consensus 165 ~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~d-s~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~ 243 (517)
T cd03343 165 KLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDD-TELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKT 243 (517)
T ss_pred HHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHH-cceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCcc
Confidence 899999999999987532 554 79999985 999999999999999999766666666665555544322
Q ss_pred c------cCCHHhHHHH-----------HHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 245 K------ISSIQSIIPA-----------LELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 245 k------i~s~~~i~~~-----------le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
+ +++++++.++ ++.+.+.|+||||++++|+++|+++|..+ +|++|+ ++++++
T Consensus 244 ~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~-----~v~~~~ 312 (517)
T cd03343 244 EIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR-----RVKKSD 312 (517)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE-----eCCHHH
Confidence 2 5777777654 44788899999999999999999999743 467775 667999
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eechh
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCEKA 369 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~Da 369 (462)
|+|||++|||++++ +++++++++||+|++|++.+ ++..++.|++| +.|||+ +++||
T Consensus 313 l~~Ia~~tGa~ii~------~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Da 386 (517)
T cd03343 313 MEKLARATGAKIVT------NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDA 386 (517)
T ss_pred HHHHHHHhCCEEec------chhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHH
Confidence 99999999999999 78999999999999999864 33345555554 578986 99999
Q ss_pred hHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 370 PCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 370 L~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
||++|++++||++|| |||+.| +++..++++
T Consensus 387 l~~~~~~~~~~~vvp-----------GGG~~e~~ls~~L~~~ 417 (517)
T cd03343 387 LRVVADALEDGKVVA-----------GGGAVEIELAKRLREY 417 (517)
T ss_pred HHHHHHHHhCCCeee-----------CCCHHHHHHHHHHHHH
Confidence 999999999999999 999999 888877765
No 15
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-68 Score=563.58 Aligned_cols=366 Identities=46% Similarity=0.687 Sum_probs=334.2
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
|+++..||.++|..|+.|++.|+++|++||||+||||||+++.|+|.|||||+||+|+|+++| |+|||++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeieleh----p~akll~eva~~q 77 (524)
T COG0459 2 MGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEH----PGAKLLVEVAKKQ 77 (524)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccC----chhHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999779999999999999999977 6999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHHcCCCc
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE-----EIAQVATISANGDK 175 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~-----~l~~va~~s~~~~~ 175 (462)
|+++||||||+||||++||++|.+++++|+||+.|++||++|.+.++++|+++++|+++.+ ...++++.++++++
T Consensus 78 d~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~ 157 (524)
T COG0459 78 DDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDE 157 (524)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChH
Confidence 9999999999999999999999999999999999999999999999999999999998655 45555555666568
Q ss_pred hhhhHHHHHHHHhcc-----CceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHH
Q psy2267 176 AVGELISDAMKRVGK-----EGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQ 250 (462)
Q Consensus 176 ~i~~li~~A~~~vg~-----~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~ 250 (462)
+|++++++|+.+++. ++.+.++..++..+++++++||+||+||.+|||+++ ..++||+|++++.+|+..+
T Consensus 158 ~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k 232 (524)
T COG0459 158 EIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKK 232 (524)
T ss_pred HHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCc-----cccccceEEEEcccccccc
Confidence 999999999999998 777776655555556999999999999999999764 5788999999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccC
Q psy2267 251 SIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 330 (462)
Q Consensus 251 ~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~ 330 (462)
+.+| ++...+.+.|+++++++++++++..++.|.++++.++++|+.|||++.++..|+|++++||+++.+++ +.
T Consensus 233 ~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~d-----l~ 306 (524)
T COG0459 233 PELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKED-----LG 306 (524)
T ss_pred ccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchh-----hH
Confidence 9988 88888889999999999999999999999999999999999999999999999999999999999864 21
Q ss_pred CCCCCCCceeeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHH
Q psy2267 331 DLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQI 410 (462)
Q Consensus 331 ~~~~~~LG~a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~ 410 (462)
.....+|.|+.+.+.++.+.... |.| .
T Consensus 307 -~~l~~~~ga~~v~~~~d~t~~~~-----------------------------------------G~~----------~- 333 (524)
T COG0459 307 -ERLAKLGGAKIVSVLKDLTTIVL-----------------------------------------GEG----------A- 333 (524)
T ss_pred -HHHHHccCceEEeecccCceeec-----------------------------------------Ccc----------c-
Confidence 26678999999999999888888 877 1
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267 411 RDQIEAT-TSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN 455 (462)
Q Consensus 411 ~~~~~~~-~~~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~ 455 (462)
..+++++ .++|+++++++|.++ +||+++|++||+||.+++|++.
T Consensus 334 ~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er 378 (524)
T COG0459 334 AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKER 378 (524)
T ss_pred cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHH
Confidence 6667776 899999999999999 9999999999999999999875
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-65 Score=547.78 Aligned_cols=354 Identities=26% Similarity=0.371 Sum_probs=313.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|++||..|+++++|||||+||||||+++.|+++|||||+||+|+|+++|| .|+|++++|++||++
T Consensus 21 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP----~akll~~~a~~qd~~ 96 (532)
T TIGR02343 21 KRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNP----IAKLMVELSKSQDDE 96 (532)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCH----HHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC----CHHHHHHHHHHHcCCC-----
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT----TPEEIAQVATISANGD----- 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~~s~~~~----- 174 (462)
+||||||+++||++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+++++++
T Consensus 97 ~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~ 176 (532)
T TIGR02343 97 IGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKC 176 (532)
T ss_pred hcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHH
Confidence 9999999999999999999999999999999999999999999999999999875 3678999999999876
Q ss_pred -chhhhHHHHHHHHhccC--c-------eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec--
Q psy2267 175 -KAVGELISDAMKRVGKE--G-------VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS-- 242 (462)
Q Consensus 175 -~~i~~li~~A~~~vg~~--g-------~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~-- 242 (462)
+.|++++++|+..+... + .|.+..|++++| +++++|++|+++|.+|+|+++.+++++.+.++.+...
T Consensus 177 ~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~ 255 (532)
T TIGR02343 177 HRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP 255 (532)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecccccc
Confidence 46899999999988531 1 245679999997 8999999999999999999999998888777776552
Q ss_pred --ccc--cCCHHhH-----------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 243 --ESK--ISSIQSI-----------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 243 --d~k--i~s~~~i-----------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
+.+ +++++++ .++++.+++.|+||||++++|+++++++|..| ++.+||. .++++
T Consensus 256 ~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~------~i~~v~~-----~~~~~ 324 (532)
T TIGR02343 256 KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQN------DLPAVRW-----VGGHE 324 (532)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHC------CcEEEEc-----CCHHH
Confidence 333 6777766 67899999999999999999999999999876 4677764 45788
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee---CceEEEEecCC---CCeeEE--------------eec
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK---DDTLILKVTSA---PPCTCK--------------SCE 367 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~---~~t~ii~~~~~---~~~TI~--------------sl~ 367 (462)
|+|||++|||++++ +++++++++||+|++|+..+ ++..++.|++| +.|||+ +++
T Consensus 325 l~~Ia~~tGa~~i~------~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~ 398 (532)
T TIGR02343 325 LELIAIATGGRIVP------RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIH 398 (532)
T ss_pred HHHHHHHhCCEEec------ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999 89999999999999998543 22345555554 578986 999
Q ss_pred hhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 368 KAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 368 DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|||+++|++++||++|| |||+.| +++.+++.+
T Consensus 399 DAl~~v~~~i~~~~vvp-----------GGGa~e~~ls~~l~~~ 431 (532)
T TIGR02343 399 DALCVVRNLIKNSRIVY-----------GGGAAEISCSLAVSQE 431 (532)
T ss_pred HHHHHHHHHHhCCCEEe-----------CcCHHHHHHHHHHHHH
Confidence 99999999999999999 999999 888887765
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.7e-65 Score=547.07 Aligned_cols=358 Identities=23% Similarity=0.323 Sum_probs=311.5
Q ss_pred hcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccccc
Q psy2267 25 VRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEA 104 (462)
Q Consensus 25 ~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~ 104 (462)
...+.+++..|+++|..++++|+|||||+||||||++++|+++|||||+||+|+|+++|| .|+|++++|++||+++
T Consensus 3 ~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp----~a~ll~~~a~~q~~~~ 78 (515)
T cd03338 3 KEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHP----AAKMLVELSKAQDIEA 78 (515)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCH----HHHHHHHHHHHHHhHh
Confidence 345678999999999999999999999999999999999999999999999999999995 8999999999999999
Q ss_pred CCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHcCCC------ch
Q psy2267 105 GDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISANGD------KA 176 (462)
Q Consensus 105 GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~~------~~ 176 (462)
||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +.+.|.++|++|+++| +.
T Consensus 79 GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ 158 (515)
T cd03338 79 GDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSL 158 (515)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHH
Confidence 999999999999999999999999999999999999999999999999999986 7889999999999965 67
Q ss_pred hhhHHHHHHHHhccCce----------EEEecCCCcccceeEEEEEEEecccCCCCc-cCccccceeEeeceeEEecccc
Q psy2267 177 VGELISDAMKRVGKEGV----------ITVKDGKTLTDELEVIEGMKFDRGYISPYF-INTAKGAKVEFQDALVLLSESK 245 (462)
Q Consensus 177 i~~li~~A~~~vg~~g~----------I~v~~G~~~~des~lv~G~~~d~g~~sp~~-~~~~~~~kv~l~n~~Ili~d~k 245 (462)
+|+++++|+.++++++. |.++.|++++| +++++|++|+++|.+|+| ++..+++++.+.++++.....+
T Consensus 159 ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~d-s~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~ 237 (515)
T cd03338 159 LAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIED-TELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237 (515)
T ss_pred HHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhh-ceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccc
Confidence 99999999999998663 66778999987 899999999999999874 7777777777766665542211
Q ss_pred ------cCCH-----------HhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhH
Q psy2267 246 ------ISSI-----------QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATL 308 (462)
Q Consensus 246 ------i~s~-----------~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~L 308 (462)
++++ +++.++++.+++.|+||||++++|++++++.++.|.+++ .+|+||+ ++++++|
T Consensus 238 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~~L 311 (515)
T cd03338 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIEREEI 311 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHHHH
Confidence 2232 456788999999999999999998444444443333332 4799986 6789999
Q ss_pred HHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC----CCeeEE--------------eechh
Q psy2267 309 QDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA----PPCTCK--------------SCEKA 369 (462)
Q Consensus 309 edIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~----~~~TI~--------------sl~Da 369 (462)
+|||++|||++++ +++++++++||+|++|++.+ +++.+++|++| +.|||+ +++||
T Consensus 312 erIa~~tGa~ii~------sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Da 385 (515)
T cd03338 312 EFICKTIGCKPVA------SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDA 385 (515)
T ss_pred HHHHHHHCCEEec------ccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHH
Confidence 9999999999999 78999999999999999877 36778888865 467876 99999
Q ss_pred hHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 370 PCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 370 L~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
||++|+++++|++|| |||+.| +++.+++.+
T Consensus 386 l~~~~~~~~~~~vvp-----------GGG~~e~~ls~~l~~~ 416 (515)
T cd03338 386 LCVIRCLVKKRALIP-----------GGGAPEIEIALQLSEW 416 (515)
T ss_pred HHHHHHHhhCCCEEE-----------CCCHHHHHHHHHHHHH
Confidence 999999999999999 999999 888777755
No 18
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.5e-65 Score=546.83 Aligned_cols=354 Identities=25% Similarity=0.371 Sum_probs=313.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+..+|.+++..|++||..|+++++|||||+||||||+++.|+++|||||+||+|+|+++|| .|||++++|++|+++
T Consensus 17 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP----~akll~~~a~~q~~~ 92 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQ----IAKLLVELSKSQDDE 92 (526)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCH----HHHHHHHHHHhhhhh
Confidence 5889999999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC----CHHHHHHHHHHHcCCC-----
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT----TPEEIAQVATISANGD----- 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~~s~~~~----- 174 (462)
+||||||+++||++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.|.++|++|++++
T Consensus 93 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 172 (526)
T cd03339 93 IGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRC 172 (526)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhH
Confidence 9999999999999999999999999999999999999999999999999999886 5778999999999975
Q ss_pred -chhhhHHHHHHHHhccC-------c--eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEe---
Q psy2267 175 -KAVGELISDAMKRVGKE-------G--VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL--- 241 (462)
Q Consensus 175 -~~i~~li~~A~~~vg~~-------g--~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili--- 241 (462)
+.|++++++|+..+... . .|.+..|++++| |++++|++|+++|.||+|+++.+++++.+.++.+..
T Consensus 173 ~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-S~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~ 251 (526)
T cd03339 173 HRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLED-TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP 251 (526)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHH-cceeeeEEEecccCCCCCCceecCCCEEEEEecccCCcc
Confidence 57899999999888531 1 245679999996 999999999999999999999999888776666554
Q ss_pred -cccc--cCCHHh-----------HHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 242 -SESK--ISSIQS-----------IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 242 -~d~k--i~s~~~-----------i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
++.+ ++++++ +.++++.+.+.|+||||++++|+++|+++|..| +|+||+.+ ++++
T Consensus 252 ~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------~I~av~~v-----~~~~ 320 (526)
T cd03339 252 KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQN------GLPAVRWV-----GGVE 320 (526)
T ss_pred ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHC------CCEEEEeC-----CHHH
Confidence 2333 677766 567899999999999999999999999999866 46788764 4788
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee---CceEEEEecCC---CCeeEE--------------eec
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK---DDTLILKVTSA---PPCTCK--------------SCE 367 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~---~~t~ii~~~~~---~~~TI~--------------sl~ 367 (462)
|+|||++|||++++ +++++++++||+|+.|+... ++..++.|++| +.|||+ +++
T Consensus 321 LerIa~~tGa~ii~------~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~ 394 (526)
T cd03339 321 IELIAIATGGRIVP------RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLH 394 (526)
T ss_pred HHHHHHHhCCEEec------chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999 88999999999999998543 23456666665 478886 999
Q ss_pred hhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 368 KAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 368 DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
||||++|++++|+++|| |||+.| +++.+++++
T Consensus 395 DAl~~~~~~~~~~~vvp-----------GGGa~e~~ls~~l~~~ 427 (526)
T cd03339 395 DALCVVRNLIRDNRIVY-----------GGGAAEISCSLAVEKA 427 (526)
T ss_pred HHHHHHHHHhhCCCEEe-----------CCCHHHHHHHHHHHHH
Confidence 99999999999999999 999999 887777655
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.7e-65 Score=540.80 Aligned_cols=339 Identities=22% Similarity=0.324 Sum_probs=297.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|+.+|..|+++|+|||||+||||||+++.|+++|||||+||+++|+++|| +|+|+.++|++||++
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP----~a~l~~~~a~~qd~~ 81 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHP----TASMIARAATAQDDI 81 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCH----HHHHHHHHHHHhhhH
Confidence 4667899999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHcCCC------
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT---TPEEIAQVATISANGD------ 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~---~~~~l~~va~~s~~~~------ 174 (462)
+||||||+++||++||+++.+++++|+||+.|++||++|.+.+++.|++++++++ +.+.+.+||++|+++|
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~ 161 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLA 161 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHH
Confidence 9999999999999999999999999999999999999999999999999999997 8889999999999987
Q ss_pred chhhhHHHHHHHHhccCc-e-------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEeccccc
Q psy2267 175 KAVGELISDAMKRVGKEG-V-------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 246 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~~g-~-------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki 246 (462)
+.|++++++|+..+++++ . |.+.+|++..| +++++|++|+++|.+|+|++. +.||+|++++.++
T Consensus 162 ~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~d-s~~i~G~~~~~~~~~~~m~~~-------~~n~~Ill~~~~l 233 (484)
T cd03342 162 DQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSD-TKLIRGLVLDHGARHPDMPKR-------VENAYILTCNVSL 233 (484)
T ss_pred HHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhh-ceEEeeEEEecCCCCCCCCcc-------ccCceEEEEeCCC
Confidence 789999999999998865 2 44568888875 999999999999999998655 4566666666555
Q ss_pred CCHHh-HHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCC
Q psy2267 247 SSIQS-IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEAS 325 (462)
Q Consensus 247 ~s~~~-i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~ 325 (462)
+..++ +... .-.+|||++++|+++++++|..| +|+||| +.++++|+|||++|||++++
T Consensus 234 e~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~------~I~av~-----~~~~~~l~~ia~~tGa~ii~---- 292 (484)
T cd03342 234 EYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKE------GILALR-----RAKRRNMERLTLACGGVAMN---- 292 (484)
T ss_pred CCCccccCcE------EEEEEEEeCCCccHHHHHHHHHC------CCeEEE-----eCCHHHHHHHHHHhCCEEec----
Confidence 43332 1111 11459999999999999999866 489987 45789999999999999999
Q ss_pred CCccCCCCCCCCceeeEEEE---eeCceEEEEecCC---CCeeEE--------------eechhhHHHHHhhhcCeEeee
Q psy2267 326 PVKLEDLQATDLGSVGEIVI---TKDDTLILKVTSA---PPCTCK--------------SCEKAPCITKNLITHYFIDIE 385 (462)
Q Consensus 326 ~~~l~~~~~~~LG~a~~v~i---~~~~t~ii~~~~~---~~~TI~--------------sl~DaL~vvk~~i~d~~vv~~ 385 (462)
+++++++++||+|++|+. +.++++ .|++| +.|||+ +++|||+++|++++++++||
T Consensus 293 --~l~~~~~~~LG~~~~v~~~~ig~~~~~--~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vp- 367 (484)
T cd03342 293 --SVDDLSPECLGYAGLVYERTLGEEKYT--FIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVP- 367 (484)
T ss_pred --ccccCChhhCcccceEEEEEECCeEEE--EEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe-
Confidence 899999999999999954 434444 44554 578886 99999999999999999999
Q ss_pred ehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 386 LLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 386 ~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|+|+.| +++.+++++
T Consensus 368 ----------GGGa~e~~ls~~L~~~ 383 (484)
T cd03342 368 ----------GAGAFEVALYAHLKEF 383 (484)
T ss_pred ----------CCCHHHHHHHHHHHHH
Confidence 999999 888887765
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-64 Score=539.76 Aligned_cols=359 Identities=23% Similarity=0.340 Sum_probs=309.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...+.+++..|+.+|..++++++|||||+||||||+++.|+++|||||+||+|+|+++|| .|+|++++|++||++
T Consensus 3 ~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP----~akll~~~a~~qd~~ 78 (517)
T TIGR02342 3 DKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHP----AAKMLVELSKAQDIE 78 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccCh----HHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHcCCC------c
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISANGD------K 175 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~~------~ 175 (462)
+||||||+++||++||+++.+++++|+||+.|++||++|.+.++++|+++++|++ +.+.+.++|+||++++ +
T Consensus 79 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~ 158 (517)
T TIGR02342 79 AGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSS 158 (517)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999987 7888999999999875 4
Q ss_pred hhhhHHHHHHHHhcc---Cce-----E--EEecCCCcccceeEEEEEEEecccCCC-CccCccccceeEeeceeEEeccc
Q psy2267 176 AVGELISDAMKRVGK---EGV-----I--TVKDGKTLTDELEVIEGMKFDRGYISP-YFINTAKGAKVEFQDALVLLSES 244 (462)
Q Consensus 176 ~i~~li~~A~~~vg~---~g~-----I--~v~~G~~~~des~lv~G~~~d~g~~sp-~~~~~~~~~kv~l~n~~Ili~d~ 244 (462)
.|++++++|+..+++ +|. | .+..|+++.| +++++|++|+++|.++ +|++..++.++.+.++++.....
T Consensus 159 ~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~d-s~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~ 237 (517)
T TIGR02342 159 LLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDD-TELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKT 237 (517)
T ss_pred HHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhh-cEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcc
Confidence 579999999999976 232 3 3457888775 9999999999999984 78888888888777776654321
Q ss_pred c------cCCH-----------HhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 245 K------ISSI-----------QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 245 k------i~s~-----------~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
+ ++++ +++.++++++++.|+|||||+++|++++++.++.|.++. .+|+||+ ++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~~ 311 (517)
T TIGR02342 238 DMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIEREE 311 (517)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHHH
Confidence 1 2332 345678999999999999999999444444333333333 4799986 678999
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEE-EeeCceEEEEecCC----CCeeEE--------------eech
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIV-ITKDDTLILKVTSA----PPCTCK--------------SCEK 368 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~-i~~~~t~ii~~~~~----~~~TI~--------------sl~D 368 (462)
|+|||++|||++++ +++++++++||+|+.|+ ++.+++.+++|.++ +.|||+ +++|
T Consensus 312 LerIa~~tGa~ii~------~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~D 385 (517)
T TIGR02342 312 VEFICKTIGCKPIA------SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHD 385 (517)
T ss_pred HHHHHHHHCCEEEc------chhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHH
Confidence 99999999999999 78999999999999999 56677788888764 467876 9999
Q ss_pred hhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 369 APCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 369 aL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|++++|++++|+++|| |||+.| +++.+++++
T Consensus 386 Al~~v~~~~~~~~~Vp-----------GGGa~e~~ls~~l~~~ 417 (517)
T TIGR02342 386 ALCVIRSLVKKRGLIP-----------GGGAPEIEIAIKLSKL 417 (517)
T ss_pred HHHHHHHHhhCCCEEE-----------CcCHHHHHHHHHHHHH
Confidence 9999999999999999 999999 888888765
No 21
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-64 Score=541.41 Aligned_cols=359 Identities=23% Similarity=0.320 Sum_probs=304.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccccc
Q psy2267 25 VRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEA 104 (462)
Q Consensus 25 ~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~ 104 (462)
...|.+++..|++||..|+++|++||||+||||||+++.|+++|||||+||+|+|+++|| .|+|++++|++|++++
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP----~akll~~~a~~q~~~~ 78 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQDKEV 78 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccCh----HHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999999999999995 8999999999999999
Q ss_pred CCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhh-cCCCCC--CHHHHHHHHHHHcCCC------c
Q psy2267 105 GDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE-LSKPVT--TPEEIAQVATISANGD------K 175 (462)
Q Consensus 105 GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~-~s~~v~--~~~~l~~va~~s~~~~------~ 175 (462)
||||||++|||++||+++.+++++|+||+.|++||+.|.+.+++.|++ +++|++ +.+.|.++|+||+++| +
T Consensus 79 GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 79 GDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHH
Confidence 999999999999999999999999999999999999999999999996 899987 7888999999999864 6
Q ss_pred hhhhHHHHHHHHhc---cCce---------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecc
Q psy2267 176 AVGELISDAMKRVG---KEGV---------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSE 243 (462)
Q Consensus 176 ~i~~li~~A~~~vg---~~g~---------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d 243 (462)
.|++++++|+..++ .+|. |.+..|+++++ +++++|++|+++|.+|.|++..+++++.+.++++....
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~-s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~ 237 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKE-SYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTK 237 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhh-cceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCc
Confidence 89999999999995 2242 33578999885 99999999999999998877766666666666655432
Q ss_pred cc------cCCHHhH-----------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchh
Q psy2267 244 SK------ISSIQSI-----------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 306 (462)
Q Consensus 244 ~k------i~s~~~i-----------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~ 306 (462)
.+ ++++.++ .+.++.+.+.|+||||++++|+++|+++|..+ +|++++ +++++
T Consensus 238 ~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~ 306 (527)
T cd03335 238 MKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RVKKE 306 (527)
T ss_pred cccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eCCHH
Confidence 22 2333332 36678888999999999999999999999865 578875 66799
Q ss_pred hHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eech
Q psy2267 307 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCEK 368 (462)
Q Consensus 307 ~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~D 368 (462)
+|+|||++|||+++++.......+++++++||+|++|++.+ .+..++.|++| +.|||+ +++|
T Consensus 307 ~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~D 386 (527)
T cd03335 307 DLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHD 386 (527)
T ss_pred HHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHH
Confidence 99999999999999943111122345667899999999544 33344555554 578986 9999
Q ss_pred hhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 369 APCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 369 aL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|||++|++++|+++|| |+|+.| +++.+++++
T Consensus 387 al~~~~~~~~~~~vvp-----------GGGa~e~~ls~~L~~~ 418 (527)
T cd03335 387 ALCVVKRTLESNSVVP-----------GGGAVETALSIYLENF 418 (527)
T ss_pred HHHHHHHHhhCCCEee-----------CCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999 888877765
No 22
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5e-64 Score=538.93 Aligned_cols=353 Identities=21% Similarity=0.292 Sum_probs=301.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|+.+|..|+++|+|||||+||||||+++.|+++|||||+||+++|+++|| .|+|+.++|++||++
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP----~a~ll~~~a~~qd~~ 85 (531)
T TIGR02347 10 ESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHP----TASMIARAATAQDDI 85 (531)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHHhhhh
Confidence 4677899999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHcCC------C
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV---TTPEEIAQVATISANG------D 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v---~~~~~l~~va~~s~~~------~ 174 (462)
+||||||++|||++||+++.+++++|+||..|++||+.|.+.++++|+++++++ .+.+.|.++|++++++ +
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 165 (531)
T TIGR02347 86 TGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLA 165 (531)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhH
Confidence 999999999999999999999999999999999999999999999999999764 5788899999999987 4
Q ss_pred chhhhHHHHHHHHhccCce------EE--EecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccc-
Q psy2267 175 KAVGELISDAMKRVGKEGV------IT--VKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESK- 245 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~~g~------I~--v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~k- 245 (462)
++|++++++|+..++++|. |. +..|++..| +++++|++|+++|.+|+|++..+++++.+.|+++.....+
T Consensus 166 ~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~d-s~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~ 244 (531)
T TIGR02347 166 DQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATD-TTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEV 244 (531)
T ss_pred HHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccc-cEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCcccc
Confidence 6899999999999988653 33 357888775 9999999999999999998766666666666555443211
Q ss_pred -----cCCHHhH-----------HHHHHHHHhcCC-------C---EEEEecCCchhHHHHHHhhhhccCceEEEEecCC
Q psy2267 246 -----ISSIQSI-----------IPALELANSKRK-------P---LVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPG 299 (462)
Q Consensus 246 -----i~s~~~i-----------~~~le~i~~~g~-------~---lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~ 299 (462)
+++.+++ ...++++...+. + ||+++++|++.++++|..+ +|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~--- 315 (531)
T TIGR02347 245 NSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR--- 315 (531)
T ss_pred CceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc---
Confidence 3344443 244566665441 4 8999999999999999754 578875
Q ss_pred CCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEE---EeeCceEEEEecCC---CCeeEE---------
Q psy2267 300 FGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIV---ITKDDTLILKVTSA---PPCTCK--------- 364 (462)
Q Consensus 300 ~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~---i~~~~t~ii~~~~~---~~~TI~--------- 364 (462)
+.++++|+|||++|||++++ +++++++++||+|++|+ +++++++ .|++| +.|||+
T Consensus 316 --rv~~~~le~ia~~tGa~~i~------~l~~~~~~~LG~~~~v~~~~ig~~~~~--~i~~~~~~~~~TI~lrG~t~~~l 385 (531)
T TIGR02347 316 --RAKRRNMERLTLACGGEALN------SVEDLTPECLGWAGLVYETSIGEEKYT--FIEEVKNPKSCTILIKGPNDHTI 385 (531)
T ss_pred --cCCHHHHHHHHHHhCCEEec------ccccCCccccccceEEEEEEECCeEEE--EEEcCCCCCeEEEEEeCCCHHHH
Confidence 55689999999999999998 89999999999999995 4444444 44454 578986
Q ss_pred -----eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 365 -----SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 365 -----sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
+++||+|++|++++||++|| |||+.| +++..++++.
T Consensus 386 ~E~er~l~DAl~v~~~~~~~~~vvp-----------GGGa~E~~ls~~l~~~~ 427 (531)
T TIGR02347 386 KQIKDAVRDGLRAVKNAIEDKCVVP-----------GAGAFEIAAYCHLKEEK 427 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEe-----------CCCHHHHHHHHHHHHHh
Confidence 99999999999999999999 999999 8888777653
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-63 Score=532.96 Aligned_cols=349 Identities=23% Similarity=0.325 Sum_probs=306.6
Q ss_pred hcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccccc
Q psy2267 25 VRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEA 104 (462)
Q Consensus 25 ~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~ 104 (462)
...|.+++..|+.+|..|+++|+|||||+||||||+++.|+++|||||+||+++|+++|| .|||++++|++|++++
T Consensus 11 ~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP----~akll~~~a~~q~~~~ 86 (522)
T cd03340 11 TSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHP----AAKTLVDIAKSQDAEV 86 (522)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCH----HHHHHHHHHHHhHhHh
Confidence 567889999999999999999999999999999999999999999999999999999995 8999999999999999
Q ss_pred CCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHcCCC----
Q psy2267 105 GDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT------PEEIAQVATISANGD---- 174 (462)
Q Consensus 105 GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~------~~~l~~va~~s~~~~---- 174 (462)
||||||+++||++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|+++ .+.+.++|++++++|
T Consensus 87 GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~ 166 (522)
T cd03340 87 GDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIAS 166 (522)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchh
Confidence 9999999999999999999999999999999999999999999999999999874 567999999999865
Q ss_pred --chhhhHHHHHHHHhccCc---e--EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccc--
Q psy2267 175 --KAVGELISDAMKRVGKEG---V--ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESK-- 245 (462)
Q Consensus 175 --~~i~~li~~A~~~vg~~g---~--I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~k-- 245 (462)
++|++++++|+.++++++ . |....|++++| +++++|++|+++|.+|+|.+.+ ..++||+|++++.+
T Consensus 167 ~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~d-s~lv~Giv~~k~~~~~~~~~~~----~~~~n~kIll~~~~Le 241 (522)
T cd03340 167 EKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLED-SQLVNGVAFKKTFSYAGFEQQP----KKFKNPKILLLNVELE 241 (522)
T ss_pred HHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhh-ceeeeeEEEecccCccccccCC----ccccCCeEEEEeCCCC
Confidence 689999999999998765 2 44568999986 9999999999999999874433 23566776665432
Q ss_pred -----------cCCHHh-----------HHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCC
Q psy2267 246 -----------ISSIQS-----------IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDN 303 (462)
Q Consensus 246 -----------i~s~~~-----------i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~ 303 (462)
++++++ +.+.++.+.+.|+++|+++++|+|.++++|..+ +|+++ ++.
T Consensus 242 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~------~I~~~-----~~v 310 (522)
T cd03340 242 LKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR------DIFCA-----GRV 310 (522)
T ss_pred CCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHC------CcEEE-----EeC
Confidence 455444 456678888899999999999999999999754 46665 456
Q ss_pred chhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------e
Q psy2267 304 RKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------S 365 (462)
Q Consensus 304 rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------s 365 (462)
++++|+|||++|||++++ +++++++++||+|++|+... ++..++.|++| +.|||+ +
T Consensus 311 ~~~~l~rIa~~tGa~ii~------~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~ 384 (522)
T cd03340 311 PEEDLKRVAQATGGSIQT------TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERS 384 (522)
T ss_pred CHHHHHHHHHHHCCEEee------ccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHH
Confidence 789999999999999999 78999999999999998543 45567777775 578986 9
Q ss_pred echhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 366 CEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 366 l~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
++|||+++|+++++|++|| |||+.| +++.+++++
T Consensus 385 i~Dal~~~~~~i~~~~vvp-----------GGG~~E~~ls~~l~~~ 419 (522)
T cd03340 385 LHDAIMIVRRAIKNDSVVA-----------GGGAIEMELSKYLRDY 419 (522)
T ss_pred HHHHHHHHHHHhcCCCEEE-----------CcCHHHHHHHHHHHHH
Confidence 9999999999999999999 999999 888877765
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-63 Score=534.61 Aligned_cols=360 Identities=23% Similarity=0.300 Sum_probs=301.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|++||..|+++|+|||||+||||||++++|+|+|||||+||+|+|+++|| .|+|++++|++||++
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP----~akll~~~a~~qd~~ 81 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQDRE 81 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccCh----HHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhc-CCCCC--CHHHHHHHHHHHcCCC------
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKEL-SKPVT--TPEEIAQVATISANGD------ 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~~~l~~va~~s~~~~------ 174 (462)
+||||||++|||++||+++.+++++|+||+.|++||+.|.+.+++.|+++ ++|++ +.+++.+||++|+++|
T Consensus 82 ~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 82 VGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhH
Confidence 99999999999999999999999999999999999999999999999974 88987 7888999999999854
Q ss_pred chhhhHHHHHHHHhc---cCce---------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec
Q psy2267 175 KAVGELISDAMKRVG---KEGV---------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS 242 (462)
Q Consensus 175 ~~i~~li~~A~~~vg---~~g~---------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~ 242 (462)
+.|++++++|+..++ .+|. |.+..|++++ ++++++|++|+++|.+|.|++..+++++.+.++++...
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~-~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~ 240 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSAR-ESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQ 240 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcc-ccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCC
Confidence 689999999999996 3342 3447999986 59999999999999999887665555555555554432
Q ss_pred ccc------cCCHHh-----------HHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCch
Q psy2267 243 ESK------ISSIQS-----------IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRK 305 (462)
Q Consensus 243 d~k------i~s~~~-----------i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk 305 (462)
..+ ++++.+ +.+.++.+.+.|++||+++++|++.++++|..+ ++++++ |.++
T Consensus 241 ~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~------~I~~i~-----rv~~ 309 (536)
T TIGR02340 241 KMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEA------GAMGVR-----RCKK 309 (536)
T ss_pred cccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEe-----cCCH
Confidence 211 233332 235677788899999999999999999999855 477765 5679
Q ss_pred hhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eec
Q psy2267 306 ATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCE 367 (462)
Q Consensus 306 ~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~ 367 (462)
++|+|||++|||+++++.......+++++++||+|++|++.+ .+..++.|+++ +.|||+ +++
T Consensus 310 ~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~ 389 (536)
T TIGR02340 310 EDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLH 389 (536)
T ss_pred HHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHH
Confidence 999999999999999943111122456677799999999433 22233444454 578986 999
Q ss_pred hhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 368 KAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 368 DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
||||++|++++|+++|| |||+.| +++.+++++
T Consensus 390 DAl~~~~~~~~~~~vVp-----------GGGa~e~~ls~~l~~~ 422 (536)
T TIGR02340 390 DALCVVKRTLESNSVVP-----------GGGAVETALSIYLENF 422 (536)
T ss_pred HHHHHHHHHhcCCCEEE-----------CCCHHHHHHHHHHHHH
Confidence 99999999999999999 999999 888777755
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-63 Score=532.11 Aligned_cols=354 Identities=20% Similarity=0.288 Sum_probs=310.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|+.+|..|+++|+|||||+||||||+++.|+++|||||+||+++|+++|| .|+|++++|++||++
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~a~~q~~~ 85 (525)
T TIGR02344 10 KRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHP----AAKSMIELSRTQDEE 85 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCH----HHHHHHHHHHhhhhh
Confidence 4678899999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHcCCC------c
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISANGD------K 175 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~~------~ 175 (462)
+||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.+.++|+|+++++ +
T Consensus 86 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ 165 (525)
T TIGR02344 86 VGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSD 165 (525)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999987 6778999999998875 6
Q ss_pred hhhhHHHHHHHHhccCc-------------eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec
Q psy2267 176 AVGELISDAMKRVGKEG-------------VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS 242 (462)
Q Consensus 176 ~i~~li~~A~~~vg~~g-------------~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~ 242 (462)
.|++++++|+..+++++ .|.+.+|++++| |++++|++|++++.++.|++..+++++.+.++++...
T Consensus 166 ~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~ 244 (525)
T TIGR02344 166 LMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYK 244 (525)
T ss_pred HHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCcccceEEecccCCCCCccccCCCCEEEEecccccc
Confidence 89999999999998653 134457999987 9999999999999888887776666666666666543
Q ss_pred ccc------cCCHHhHHHH-----------HHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCch
Q psy2267 243 ESK------ISSIQSIIPA-----------LELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRK 305 (462)
Q Consensus 243 d~k------i~s~~~i~~~-----------le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk 305 (462)
..+ +++++++.++ ++++.+.|++|||++++|++.++++|..+ +|+|+ +++++
T Consensus 245 ~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av-----~~v~~ 313 (525)
T TIGR02344 245 KGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAI-----RRVRK 313 (525)
T ss_pred cccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEE-----ecCCH
Confidence 221 3456666554 44777889999999999999999999643 57885 57889
Q ss_pred hhHHHHHHHhCCeEeccCCCCCccCCCCCCCCce-eeEEEEee-CceEEEEecCC---CCeeEE--------------ee
Q psy2267 306 ATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS-VGEIVITK-DDTLILKVTSA---PPCTCK--------------SC 366 (462)
Q Consensus 306 ~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~-a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl 366 (462)
++|+|||++|||++++ +++++++++||+ |+.|++.+ ++..++.|++| +.|||+ ++
T Consensus 314 ~~LerIa~~tGa~ii~------~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l 387 (525)
T TIGR02344 314 TDNNRIARACGATIVN------RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNL 387 (525)
T ss_pred HHHHHHHHHhCCeEec------chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHH
Confidence 9999999999999999 789999999999 99999865 45556666665 588986 99
Q ss_pred chhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 367 EKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 367 ~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+||||++|++++|+++|| |+|+.| +++..++++
T Consensus 388 ~DAl~~vk~~~~~~~vvp-----------GGGa~e~~ls~~l~~~ 421 (525)
T TIGR02344 388 QDAMAVARNVLLEPKLLP-----------GGGATEMAVSVYLAKK 421 (525)
T ss_pred HHHHHHHHHHHhCCCccc-----------CCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999 888877765
No 26
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.6e-63 Score=532.81 Aligned_cols=351 Identities=21% Similarity=0.273 Sum_probs=303.7
Q ss_pred hcccH-HHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 25 VRFGP-EVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 25 ~~~g~-~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
..+|. +++..|+.+|..|+++|++||||+||||||+++.|+++|||||+||+|+|+++|| .|+|++++|++||++
T Consensus 12 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP----~akll~e~a~sqd~~ 87 (531)
T TIGR02346 12 HMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHP----AAKLLVMASEMQENE 87 (531)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCH----HHHHHHHHHHHHhhh
Confidence 45564 5999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCC-CCCC---HHHHHHHHHHHcCC-----C
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSK-PVTT---PEEIAQVATISANG-----D 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~-~v~~---~~~l~~va~~s~~~-----~ 174 (462)
+||||||+||||++||+++++++++|+||..|++||+.|++.+++.|+++++ ++++ .+.+.++|++++++ +
T Consensus 88 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~ 167 (531)
T TIGR02346 88 IGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNE 167 (531)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchH
Confidence 9999999999999999999999999999999999999999999999999986 7744 67899999999865 5
Q ss_pred chhhhHHHHHHHHhccCc--e-------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccc
Q psy2267 175 KAVGELISDAMKRVGKEG--V-------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESK 245 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~~g--~-------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~k 245 (462)
+.|++++++|+.++++++ . |.+..|++++| +++++|++|++++. ++++..+++++.+.++++.+.+.+
T Consensus 168 ~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~d-s~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~ 244 (531)
T TIGR02346 168 DFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISN-SEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTE 244 (531)
T ss_pred HHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhh-ceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCccc
Confidence 789999999999998754 2 33458999885 99999999999943 356666777777777766665433
Q ss_pred ------cCCH-----------HhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhH
Q psy2267 246 ------ISSI-----------QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATL 308 (462)
Q Consensus 246 ------i~s~-----------~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~L 308 (462)
++++ +.+.++++++++.|+||||++++|++.++++|..+ +|+||+.|+ +.+|
T Consensus 245 ~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~-----~~~l 313 (531)
T TIGR02346 245 TKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPS-----KFEL 313 (531)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCC-----HHHH
Confidence 3343 34567899999999999999999999999998633 689999886 5689
Q ss_pred HHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC----CCeeEE--------------eechh
Q psy2267 309 QDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA----PPCTCK--------------SCEKA 369 (462)
Q Consensus 309 edIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~----~~~TI~--------------sl~Da 369 (462)
+|||.+|||++++ +++++++++||+|++|++.+ ++..+..|+++ ..|||+ +++||
T Consensus 314 ~~Ia~~tGa~ii~------~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DA 387 (531)
T TIGR02346 314 RRLCKTVGATPLA------RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDG 387 (531)
T ss_pred HHHHHHHCCEEec------ccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHH
Confidence 9999999999998 78999999999999999866 34445566653 468886 99999
Q ss_pred hHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 370 PCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 370 L~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
||++|++++|+++|| |||+.| +++..++++
T Consensus 388 l~~~k~ai~~~~vVp-----------GGG~~e~~ls~~L~~~ 418 (531)
T TIGR02346 388 VNVIKALVKDNRFLP-----------GAGATEIELALRLKKY 418 (531)
T ss_pred HHHHHHHhcCCCEEE-----------CcCHHHHHHHHHHHHH
Confidence 999999999999999 999999 777777655
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.7e-62 Score=523.75 Aligned_cols=354 Identities=21% Similarity=0.293 Sum_probs=304.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecC--CCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQS--WGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~--~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~ 101 (462)
+...|.+++..|+.||..++++|+|||||+||||||+++ +|+++|||||+||+|+|+++|| +|+|++++|++||
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP----~akll~~~a~~qd 82 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNP----AAKVLVDISKVQD 82 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcCh----HHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999998 5999999999999999999995 9999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC-----CHHHHHHHHHHHcCCC--
Q psy2267 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT-----TPEEIAQVATISANGD-- 174 (462)
Q Consensus 102 ~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~-----~~~~l~~va~~s~~~~-- 174 (462)
+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +.+.|.++|+|+++++
T Consensus 83 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~ 162 (517)
T cd03336 83 DEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKIL 162 (517)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999984 3568999999998876
Q ss_pred ----chhhhHHHHHHHHhccC---c--eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccc
Q psy2267 175 ----KAVGELISDAMKRVGKE---G--VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESK 245 (462)
Q Consensus 175 ----~~i~~li~~A~~~vg~~---g--~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~k 245 (462)
+.|++++++|+.+++.. . .|.+.+|++++| +++++|+++++++.++ +++..+++++.+.|+++.....+
T Consensus 163 ~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~d-s~l~~G~v~~~~~~~~-~~~~~~n~kIli~~~~le~~~~~ 240 (517)
T cd03336 163 TQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKD-SYLDEGFLLDKKIGVN-QPKRIENAKILIANTPMDTDKIK 240 (517)
T ss_pred chhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccc-eEEEeeEEEecccCCC-CCCeeccccEEEEecCCCccccc
Confidence 67999999999999632 1 245568999996 9999999999987543 45554555555555544432222
Q ss_pred -------cCCHHhHH-----------HHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 246 -------ISSIQSII-----------PALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 246 -------i~s~~~i~-----------~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
+++++++. ..++.+.+.|++++++++.|++.++++|..+ +|++|+.|+ +++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~~~ 309 (517)
T cd03336 241 IFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----FDG 309 (517)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----HHH
Confidence 24666552 3577788899999999999999999999744 689998775 668
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eechh
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCEKA 369 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~Da 369 (462)
|+|||++|||++++ +++++++++||+|++|+... ++..++.|++| +.|||+ +++||
T Consensus 310 L~rIa~~tGa~ii~------~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Da 383 (517)
T cd03336 310 VERLALVTGGEIAS------TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDA 383 (517)
T ss_pred HHHHHHHhCCEEec------ccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999 88999999999999998655 56678888876 578986 99999
Q ss_pred hHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 370 PCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 370 L~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
||++|++++|+++|| |||+.| +++.+++++.
T Consensus 384 l~~~~~~i~~~~vvp-----------GGGa~e~~ls~~l~~~~ 415 (517)
T cd03336 384 LCVLAQTVKDTRVVL-----------GGGCSEMLMAKAVEELA 415 (517)
T ss_pred HHHHHHHHhCCCEEe-----------CCCHHHHHHHHHHHHHh
Confidence 999999999999999 999999 8888887653
No 28
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-62 Score=525.96 Aligned_cols=349 Identities=21% Similarity=0.300 Sum_probs=306.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|+++|..++++|+|||||+||||||+++.| ++|||||+||+|+|+++|| .|+|++++|++||++
T Consensus 12 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP----~a~ll~~~a~~q~~~ 86 (522)
T TIGR02345 12 DTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHP----AAKTLVDIAKSQDSE 86 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccCh----HHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999 9999999999999999995 899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC-----CHHHHHHHHHHHcCCC----
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT-----TPEEIAQVATISANGD---- 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~-----~~~~l~~va~~s~~~~---- 174 (462)
+||||||+++||++||+++++++++|+||+.|++||+.|.+.++++|+++++|++ +.+.+.++|++|+++|
T Consensus 87 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~ 166 (522)
T TIGR02345 87 VGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAH 166 (522)
T ss_pred hCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999997 5578999999999854
Q ss_pred --chhhhHHHHHHHHhccCc------eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEeccccc
Q psy2267 175 --KAVGELISDAMKRVGKEG------VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 246 (462)
Q Consensus 175 --~~i~~li~~A~~~vg~~g------~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki 246 (462)
++|++++++|+.++++++ .|.+.+|++++| +++++|++|+++|.+|||.+.+ ..++||+|++++.++
T Consensus 167 ~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~d-s~~v~Giv~~~~~~~~~~~~~~----~~~~n~kIll~~~~L 241 (522)
T TIGR02345 167 EKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQD-SVLVNGVAFKKTFSYAGFEQQP----KKFANPKILLLNVEL 241 (522)
T ss_pred hHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHh-cceecceEEecccCccccccCC----ceeccceEEEEecCc
Confidence 689999999999998653 244568999997 8999999999999999985433 346677777765332
Q ss_pred -------------CCHHhH-----------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCC
Q psy2267 247 -------------SSIQSI-----------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGD 302 (462)
Q Consensus 247 -------------~s~~~i-----------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~ 302 (462)
++++++ ...++.+.+.|.++++++++|++.++++|..+ +|+++ ++
T Consensus 242 e~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~-----~~ 310 (522)
T TIGR02345 242 ELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCA-----GR 310 (522)
T ss_pred ccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEE-----ec
Confidence 344442 34566677789999999999999999999744 57775 46
Q ss_pred CchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------
Q psy2267 303 NRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK-------------- 364 (462)
Q Consensus 303 ~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~-------------- 364 (462)
..+++|++||++|||++++ +++++++++||+|+.++..+ .+..+..|++| +.|||+
T Consensus 311 v~~~dl~ria~~tga~ii~------~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r 384 (522)
T TIGR02345 311 VSDEDLKRVVKACGGSIQS------TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAER 384 (522)
T ss_pred CCHHHHHHHHHHhCCeEEc------chhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHH
Confidence 6789999999999999999 78999999999999999755 56677888876 488986
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||||++|++++||++|| |||+.| +++..++++
T Consensus 385 ~i~DAl~~~~~~~~~~~vvp-----------GGG~~e~~ls~~l~~~ 420 (522)
T TIGR02345 385 SLHDAIMIVRRALKARKIVA-----------GGGAIEMELSKILREH 420 (522)
T ss_pred HHHHHHHHHHHHhcCCCEEe-----------CCCHHHHHHHHHHHHH
Confidence 99999999999999999999 999999 888777765
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.6e-61 Score=520.48 Aligned_cols=356 Identities=21% Similarity=0.299 Sum_probs=303.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecC-----CCCceEecChHHhhhccccCCccchhHHHHHHHHH
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQS-----WGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVA 97 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~-----~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a 97 (462)
.+...|+++|..|+.||..++++|+|||||+||||||+++ +|+++|||||+||+|+|+++|| +|+|++++|
T Consensus 15 ~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP----~akll~~~a 90 (533)
T PTZ00212 15 AQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNP----AAKILVDIS 90 (533)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCH----HHHHHHHHH
Confidence 3467789999999999999999999999999999999998 6999999999999999999995 999999999
Q ss_pred hhcccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHcC
Q psy2267 98 NNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-----PEEIAQVATISAN 172 (462)
Q Consensus 98 ~~q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~~s~~ 172 (462)
++||+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++ .++|.+||+|+++
T Consensus 91 ~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~ 170 (533)
T PTZ00212 91 KTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLS 170 (533)
T ss_pred HhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999864 5789999999998
Q ss_pred CC------chhhhHHHHHHHHhccC---c--eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEe
Q psy2267 173 GD------KAVGELISDAMKRVGKE---G--VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL 241 (462)
Q Consensus 173 ~~------~~i~~li~~A~~~vg~~---g--~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili 241 (462)
++ +.|++++++|+..+.+. . .|.+.+|++++| +++++|+++++++.+ .|++..+++++.+.|+++..
T Consensus 171 sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~d-s~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~ 248 (533)
T PTZ00212 171 SKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRD-SYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDT 248 (533)
T ss_pred ccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccc-cEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCC
Confidence 86 57899999999988542 1 255679999996 999999999998754 35555555555555555433
Q ss_pred cccc-------cCCHHhHH-----------HHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCC
Q psy2267 242 SESK-------ISSIQSII-----------PALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDN 303 (462)
Q Consensus 242 ~d~k-------i~s~~~i~-----------~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~ 303 (462)
...+ +++++++. ..++.+...|+++++++++|++.++++|..+ +|++|| +.
T Consensus 249 ~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~v 317 (533)
T PTZ00212 249 DKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----HA 317 (533)
T ss_pred CcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----cC
Confidence 2222 26666542 2466777889999999999999999999754 589987 34
Q ss_pred chhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------e
Q psy2267 304 RKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------S 365 (462)
Q Consensus 304 rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------s 365 (462)
++++|+|||++|||++++ +++++++++||+|++|+... ++..++.|++| +.|||+ +
T Consensus 318 ~~~~l~rIa~~tGa~iis------~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~ 391 (533)
T PTZ00212 318 DFDGMERLAAALGAEIVS------TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERS 391 (533)
T ss_pred CHHHHHHHHHHhCCEEee------cCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHH
Confidence 578999999999999999 78999999999999998533 33455566665 578986 9
Q ss_pred echhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHHH
Q psy2267 366 CEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIRD 412 (462)
Q Consensus 366 l~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~~ 412 (462)
++||||++|++++|+++|| |||+.| +++..++++..
T Consensus 392 i~DAl~vv~~~i~~~~vVp-----------GGGa~e~~ls~~L~~~~~ 428 (533)
T PTZ00212 392 LHDALCVLSQTVKDTRVVL-----------GGGCSEMLMANAVEELAK 428 (533)
T ss_pred HHHHHHHHHHHhhCCCEee-----------CCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999 999999 88888876643
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-61 Score=514.29 Aligned_cols=330 Identities=23% Similarity=0.346 Sum_probs=292.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|.+++..|+.+|..++++++|||||+||+|||+++.|++.|||||+||+|+|+++|| +|+|++++|++|+++
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~a~~q~~~ 85 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHP----AAKSMIELSRTQDEE 85 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccCh----HHHHHHHHHHhHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHcCCC------c
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISANGD------K 175 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~~------~ 175 (462)
+||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +.+.+.++|+++++++ +
T Consensus 86 ~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~ 165 (480)
T cd03337 86 VGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSD 165 (480)
T ss_pred hCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999987 7888999999999976 5
Q ss_pred hhhhHHHHHHHHhccC--ce---------E--EEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec
Q psy2267 176 AVGELISDAMKRVGKE--GV---------I--TVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS 242 (462)
Q Consensus 176 ~i~~li~~A~~~vg~~--g~---------I--~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~ 242 (462)
.+++++++|+..++++ |. | .+.+|+++.| +++++|++|++++.+|.|++ .++||+|++.
T Consensus 166 ~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~d-s~li~Gvvi~k~~~~~~m~~-------~~~n~kIlll 237 (480)
T cd03337 166 LMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIED-SRVLDGVMLNKDVTHPKMRR-------RIENPRIVLL 237 (480)
T ss_pred HHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHh-cccccceEEeccCCCCCCCc-------EecCCCEEEE
Confidence 7999999999999864 31 3 3457999886 99999999999999886654 4567777776
Q ss_pred ccccCCHHhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEecc
Q psy2267 243 ESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGD 322 (462)
Q Consensus 243 d~ki~s~~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~ 322 (462)
+..+.. |||++++|+++|+++|..| +|++|+ ++++++|+|||++|||++++
T Consensus 238 ~~~Le~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~- 288 (480)
T cd03337 238 DCPLEY-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN- 288 (480)
T ss_pred ecCcce-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-
Confidence 665543 9999999999999999866 588886 56789999999999999999
Q ss_pred CCCCCccCCCCCCCCcee-eEEEEee-CceEEEEecCC---CCeeEE--------------eechhhHHHHHhhhcCeEe
Q psy2267 323 EASPVKLEDLQATDLGSV-GEIVITK-DDTLILKVTSA---PPCTCK--------------SCEKAPCITKNLITHYFID 383 (462)
Q Consensus 323 ~~~~~~l~~~~~~~LG~a-~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~DaL~vvk~~i~d~~vv 383 (462)
+++++++++||+| +.++..+ ++..++.|++| +.|||+ +++||++++|++++||++|
T Consensus 289 -----~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~v 363 (480)
T cd03337 289 -----RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLV 363 (480)
T ss_pred -----chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 7899999999995 5555443 44456666665 588986 9999999999999999999
Q ss_pred eeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 384 IELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 384 ~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
| |+|+.| +++..++++
T Consensus 364 p-----------GGGa~E~~ls~~l~~~ 380 (480)
T cd03337 364 P-----------GGGATEMAVSHALSEK 380 (480)
T ss_pred e-----------CCCHHHHHHHHHHHHH
Confidence 9 999999 787777654
No 31
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8e-61 Score=507.60 Aligned_cols=331 Identities=39% Similarity=0.572 Sum_probs=297.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+..++++++..|++||..+++++++||||+||+|||+++.|+|+|||||+||+|+|+++| |+|+|++++|++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~h----p~a~ll~~~~~~~~~~ 77 (464)
T cd00309 2 EREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEH----PAAKLLVEVAKSQDDE 77 (464)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcC----HHHHHHHHHHHHHHhH
Confidence 467889999999999999999999999999999999999999999999999999999988 5999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHcCC------Cc
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKP--VTTPEEIAQVATISANG------DK 175 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~--v~~~~~l~~va~~s~~~------~~ 175 (462)
+||||||+++||++||+++.+++++|+||..|++||+.|.+.+++.|+++++| +.+.+.+.++|++++++ ++
T Consensus 78 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 157 (464)
T cd00309 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDD 157 (464)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999 66889999999999994 46
Q ss_pred hhhhHHHHHHHHhcc------CceEEE--ecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccC
Q psy2267 176 AVGELISDAMKRVGK------EGVITV--KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKIS 247 (462)
Q Consensus 176 ~i~~li~~A~~~vg~------~g~I~v--~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~ 247 (462)
.+++++++|+.++++ .+.|.+ ..|+++.| +++++|++|+++|.+|+| +..++||+|++++.+++
T Consensus 158 ~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~d-s~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 158 FLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLED-SELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLE 229 (464)
T ss_pred HHHHHHHHHHHHhccccCccccceEEEEecCCCCccc-ceeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcc
Confidence 899999999999988 466654 57888886 999999999999999998 34677888888888776
Q ss_pred CHHhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCC
Q psy2267 248 SIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPV 327 (462)
Q Consensus 248 s~~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~ 327 (462)
. |+|++++|+++|+++|..+ +|++|+. .++++|+|||++|||++++
T Consensus 230 ~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~------ 275 (464)
T cd00309 230 Y-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS------ 275 (464)
T ss_pred e-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEec------
Confidence 5 7777888999999999753 6899874 5689999999999999999
Q ss_pred ccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eechhhHHHHHhhhcCeEeeeehhh
Q psy2267 328 KLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCEKAPCITKNLITHYFIDIELLLI 389 (462)
Q Consensus 328 ~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~DaL~vvk~~i~d~~vv~~~~~~ 389 (462)
+++++++++||+|++|++.+ ++..++.|.++ +.|||+ +++|||+++|+++++|++||
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vp----- 350 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVP----- 350 (464)
T ss_pred ccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCccc-----
Confidence 78889999999999999876 44455556653 588986 99999999999999999999
Q ss_pred hccCCCCCCCHH-HHHHHHHHHH
Q psy2267 390 SFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 390 ~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
|+|+.| +++..+.+..
T Consensus 351 ------GGGa~E~~ls~~L~~~~ 367 (464)
T cd00309 351 ------GGGAAEIELSKALEELA 367 (464)
T ss_pred ------CCcHHHHHHHHHHHHHh
Confidence 999999 7777776553
No 32
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-60 Score=507.89 Aligned_cols=353 Identities=22% Similarity=0.286 Sum_probs=299.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCC--CCceEecChHHhhhccccCCccchhHHHHHHHHHhhcc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSW--GSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~--g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~ 101 (462)
+...|++++..|++|+..++++++|||||+||||||+++. |+++|||||+||+|+|+++|| +|+|++++|++||
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP----~akll~~~a~~qd 83 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNP----AAKVLVDMSKVQD 83 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcCh----HHHHHHHHHHHhH
Confidence 3567789999999999999999999999999999999985 999999999999999999995 9999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHcCCC--
Q psy2267 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-----PEEIAQVATISANGD-- 174 (462)
Q Consensus 102 ~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~~s~~~~-- 174 (462)
+++||||||++|||++||++|.+++++|+||+.|++||+.|.+.++++|+++++|+++ .++|.++|+|+++++
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~ 163 (519)
T TIGR02341 84 DEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKIL 163 (519)
T ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999853 478999999999875
Q ss_pred ----chhhhHHHHHHHHhccCc---eEE--EecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccc
Q psy2267 175 ----KAVGELISDAMKRVGKEG---VIT--VKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESK 245 (462)
Q Consensus 175 ----~~i~~li~~A~~~vg~~g---~I~--v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~k 245 (462)
+.|++++++|+..+.... .|. +.+|+++++ +++++|+++++++.+ .+++..+++++.+.|+++.....+
T Consensus 164 ~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~-s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~ 241 (519)
T TIGR02341 164 SQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLND-SYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVK 241 (519)
T ss_pred hhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCccc-ceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCccc
Confidence 568999999999884321 244 458999986 999999999998754 345444444444444444332211
Q ss_pred -------cCCHHhH-----------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 246 -------ISSIQSI-----------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 246 -------i~s~~~i-----------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
+++++++ ...++.+...|++++++++.|++.++++|..+ +|++|+.|+ +++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~~~ 310 (519)
T TIGR02341 242 VFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----FEG 310 (519)
T ss_pred cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----HHH
Confidence 2234333 23467788899999999999999999999744 689998775 679
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eechh
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCEKA 369 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~Da 369 (462)
|+|||++|||++++ +++++++++||+|++|+... ++..++.|++| +.|||+ +++||
T Consensus 311 l~~ia~~tGa~ii~------~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Da 384 (519)
T TIGR02341 311 IERLALVTGGEIVS------TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDA 384 (519)
T ss_pred HHHHHHHhCCEEec------ccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999 78999999999999998654 45667778875 478886 99999
Q ss_pred hHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 370 PCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 370 L~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
||++|++++|+++|| |||+.| +++.+++++
T Consensus 385 l~~~~~~~~~~~vvp-----------GGGa~e~~ls~~l~~~ 415 (519)
T TIGR02341 385 LCVLSQTVKESRTVL-----------GGGCSEMLMSKAVAVE 415 (519)
T ss_pred HHHHHHHHhCCCEEe-----------CCCHHHHHHHHHHHHH
Confidence 999999999999999 999999 888777765
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-59 Score=497.12 Aligned_cols=328 Identities=20% Similarity=0.252 Sum_probs=289.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccccCC
Q psy2267 27 FGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGD 106 (462)
Q Consensus 27 ~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~GD 106 (462)
.+++++..|+++|..|++++++||||+||||||++++|++.|||||+||+++|+++|| .|+|++++|++|++++||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~a~~~~~~~GD 80 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHP----AAKLLVMASQMQEEEIGD 80 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCH----HHHHHHHHHHHHhhhhCC
Confidence 3578999999999999999999999999999999999999999999999999999995 899999999999999999
Q ss_pred CcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCC-CC---CHHHHHHHHHHHcCCC-----chh
Q psy2267 107 GTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKP-VT---TPEEIAQVATISANGD-----KAV 177 (462)
Q Consensus 107 GTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~-v~---~~~~l~~va~~s~~~~-----~~i 177 (462)
||||+++|+++||+++.+++++|+||+.|++||+.|.+.+++.|++++++ ++ +.+.+.++++++++++ ++|
T Consensus 81 GTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 160 (472)
T cd03341 81 GTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFL 160 (472)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHH
Confidence 99999999999999999999999999999999999999999999999875 53 4667889999998765 589
Q ss_pred hhHHHHHHHHhccC--ce-------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCC
Q psy2267 178 GELISDAMKRVGKE--GV-------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISS 248 (462)
Q Consensus 178 ~~li~~A~~~vg~~--g~-------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s 248 (462)
++++++|+.+++++ |. |.+.+|++++| +++++|++|++.+. + +...++||+|++++.+++.
T Consensus 161 ~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~d-s~lv~Giv~~~~~~--~-------~~~~~~n~~Ili~~~~Le~ 230 (472)
T cd03341 161 SPLVAEACISVLPENIGNFNVDNIRVVKILGGSLED-SKVVRGMVFKREPE--G-------SVKRVKKAKVAVFSCPFDI 230 (472)
T ss_pred HHHHHHHHHHHhhccCCcCChhHeEEEEecCCCccc-ceEEeeEEEccccC--C-------CceeccCCcEEEEeccccC
Confidence 99999999999875 43 34568999997 89999999987542 1 2256889999999888765
Q ss_pred HHhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCc
Q psy2267 249 IQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVK 328 (462)
Q Consensus 249 ~~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~ 328 (462)
|+||||++++|+++++++|. +. +|++|+.|+ +++|+|||++|||++++ +
T Consensus 231 --------------g~~lvi~~~~I~d~al~~l~--~~----~I~av~~~~-----~~~Le~Ia~~tGa~ii~------~ 279 (472)
T cd03341 231 --------------GVNVIVAGGSVGDLALHYCN--KY----GIMVIKINS-----KFELRRLCRTVGATPLP------R 279 (472)
T ss_pred --------------CCeEEEECCCCCHHHHHHHH--HC----CeEEEEeCC-----HHHHHHHHHHhCCEEec------c
Confidence 89999999999999999975 32 699999876 78999999999999999 7
Q ss_pred cCCCCCCCCceeeEEEEee-CceEEEEecCC----CCeeEE--------------eechhhHHHHHhhhcCeEeeeehhh
Q psy2267 329 LEDLQATDLGSVGEIVITK-DDTLILKVTSA----PPCTCK--------------SCEKAPCITKNLITHYFIDIELLLI 389 (462)
Q Consensus 329 l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~----~~~TI~--------------sl~DaL~vvk~~i~d~~vv~~~~~~ 389 (462)
++++++++||+|++|++.+ ++..++.|++| +.|||+ +++||||++|+++++|++||
T Consensus 280 ~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVp----- 354 (472)
T cd03341 280 LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVP----- 354 (472)
T ss_pred cccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEe-----
Confidence 8889999999999999876 33445556654 468886 99999999999999999999
Q ss_pred hccCCCCCCCHH-HHHHHHHHH
Q psy2267 390 SFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 390 ~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|+|..| .++..++++
T Consensus 355 ------GGG~~e~~ls~~l~~~ 370 (472)
T cd03341 355 ------GAGATEIELAKKLKEY 370 (472)
T ss_pred ------CcCHHHHHHHHHHHHH
Confidence 999999 777777655
No 34
>KOG0358|consensus
Probab=100.00 E-value=1.6e-58 Score=455.76 Aligned_cols=366 Identities=23% Similarity=0.329 Sum_probs=312.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccc
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~ 102 (462)
++....++.|.+|+.+.+.++|+++|||||+||+|||....|+..|||||+||+|.|++-| |+|+|+++++..||.
T Consensus 19 ~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlh----P~akmLvelS~aQD~ 94 (534)
T KOG0358|consen 19 KDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLH----PAAKMLVELSAAQDS 94 (534)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhC----hHHHHHHHhhhhccc
Confidence 4456678999999999999999999999999999999999999999999999999999999 499999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHcCCC------
Q psy2267 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISANGD------ 174 (462)
Q Consensus 103 ~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~~------ 174 (462)
++||||||+|+||++||+.+.+|+++|+||+.|...|+.|.+..++.|.+|+.|++ +++.|.+-|+||+|+|
T Consensus 95 eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s 174 (534)
T KOG0358|consen 95 EAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYS 174 (534)
T ss_pred cccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999887 7888999999999986
Q ss_pred chhhhHHHHHHHHhccCc--------eE--EEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec--
Q psy2267 175 KAVGELISDAMKRVGKEG--------VI--TVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS-- 242 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~~g--------~I--~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~-- 242 (462)
..++.+.++|+.++-..+ .| .++.||+++| +++++|++|+.......-||+.+++++.+-.+.|-..
T Consensus 175 ~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdD-te~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKt 253 (534)
T KOG0358|consen 175 SLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDD-TELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKT 253 (534)
T ss_pred cccchHHHHHHHhccCcccccccchhhhhhHHhhCCccch-hhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCC
Confidence 568999999999875411 13 3478999986 9999999999877655578999999998877665442
Q ss_pred cc--c--cCCHHh-----------HHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 243 ES--K--ISSIQS-----------IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 243 d~--k--i~s~~~-----------i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
|. + ++++.+ ++.++++++++|++++++|++|=.+|++-|+.+-+. .++||+|| +..+++
T Consensus 254 dmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----dieRed 327 (534)
T KOG0358|consen 254 DMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIERED 327 (534)
T ss_pred CcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----cccHhh
Confidence 11 1 344443 356788899999999999998766555555544332 35899987 556889
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEe-e-CceEEEEecCC----CCeeEE--------------eec
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVIT-K-DDTLILKVTSA----PPCTCK--------------SCE 367 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~-~-~~t~ii~~~~~----~~~TI~--------------sl~ 367 (462)
+|.+|+.+|+++++ +++.++++.||+++.++-. . ++-.++.+.++ +.+||+ |+|
T Consensus 328 iefick~l~c~Pia------~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlh 401 (534)
T KOG0358|consen 328 IEFICKTLGCKPIA------DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLH 401 (534)
T ss_pred HHHHHhhcCCeecc------hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhh
Confidence 99999999999999 7899999999999988743 2 34467777764 466665 999
Q ss_pred hhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHHHHHHh
Q psy2267 368 KAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIRDQIEA 416 (462)
Q Consensus 368 DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~~~~~~ 416 (462)
|||||+||+++-+.+++ |+|++| +++.|+..+.+.++-
T Consensus 402 DALCVirCLvk~r~li~-----------GGGapEieia~~L~~~a~t~eG 440 (534)
T KOG0358|consen 402 DALCVIRCLVKKRALIA-----------GGGAPEIEIALRLSALARTLEG 440 (534)
T ss_pred hhhHHHHhhhhccceec-----------CCCCcchHHHHHHHHHHhhhcc
Confidence 99999999999999999 999999 999999877766543
No 35
>KOG0361|consensus
Probab=100.00 E-value=1.1e-57 Score=450.34 Aligned_cols=352 Identities=20% Similarity=0.295 Sum_probs=304.0
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcc
Q psy2267 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101 (462)
Q Consensus 22 ~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~ 101 (462)
..+-+.|.-...+|+++|..++++++|||||+||+|+|++..|+.+|+|||+||+|-+++-|| +||.++++|++||
T Consensus 12 gtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhP----aaktlVdia~sQD 87 (543)
T KOG0361|consen 12 GTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHP----AAKTLVDIARSQD 87 (543)
T ss_pred ccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcCh----hHHHHHHHHhhcc
Confidence 345678888999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--C----HHHHHHHHHHHcCCC-
Q psy2267 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--T----PEEIAQVATISANGD- 174 (462)
Q Consensus 102 ~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~~~- 174 (462)
.|+||||||||+||+++|+++..+++.|+||..|+++|++|...+++.|+++++.++ + ++.|+++|.|++++|
T Consensus 88 aEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKl 167 (543)
T KOG0361|consen 88 AEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKL 167 (543)
T ss_pred ccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999886 2 456899999999875
Q ss_pred -----chhhhHHHHHHHHhccCc---e--EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEeccc
Q psy2267 175 -----KAVGELISDAMKRVGKEG---V--ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSES 244 (462)
Q Consensus 175 -----~~i~~li~~A~~~vg~~g---~--I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ 244 (462)
++|+++++||+..+..+. . |.+.+||+++| |.+++|+.|++.|.+.+|. .++..+.||+|++.+-
T Consensus 168 I~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d-S~lv~GVAFkKtFsYAGfE----qqPKk~~NpkIl~Lnv 242 (543)
T KOG0361|consen 168 IRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED-SLLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNV 242 (543)
T ss_pred hhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch-hhhccceeeeehccccchh----hCccccCCceEEEEee
Confidence 689999999999987432 2 67889999996 9999999999999988884 3444577887776432
Q ss_pred -------------ccCCHHhH-----------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCC
Q psy2267 245 -------------KISSIQSI-----------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGF 300 (462)
Q Consensus 245 -------------ki~s~~~i-----------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~ 300 (462)
.+.+++++ ...|+++..+|.++|+..-.|.|.|.+||+.+. | .|.
T Consensus 243 ELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd------i-----FCA 311 (543)
T KOG0361|consen 243 ELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD------I-----FCA 311 (543)
T ss_pred eeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC------c-----eec
Confidence 13455543 467889999999999999999999999998542 2 346
Q ss_pred CCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCCC---CeeEE------------
Q psy2267 301 GDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSAP---PCTCK------------ 364 (462)
Q Consensus 301 g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~~---~~TI~------------ 364 (462)
|++.+++|.|+..+|||.+.+ +..++.++.||.|..++-.+ ....|-.|+||+ .||++
T Consensus 312 GRV~~eDl~Rv~~acGGsi~t------t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~ 385 (543)
T KOG0361|consen 312 GRVPEEDLNRVMQACGGSIQT------TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEET 385 (543)
T ss_pred CcCCHHHHHHHHHhcCcchhh------hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHH
Confidence 899999999999999999998 77899999999999987432 233455578873 66765
Q ss_pred --eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 --SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 --sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|+|||+|++|+++++..+|+ |+|+-| +++.-+++.
T Consensus 386 eRSlHDAImIVrralkn~~vVa-----------GGGaiEMElSk~lRd~ 423 (543)
T KOG0361|consen 386 ERSLHDAIMIVRRALKNDSVVA-----------GGGAIEMELSKYLRDY 423 (543)
T ss_pred hhhhhhHHHHHHHHhccCcEee-----------CCceeeehHHHHHHHh
Confidence 99999999999999999999 888888 777665544
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-53 Score=454.00 Aligned_cols=338 Identities=28% Similarity=0.420 Sum_probs=282.0
Q ss_pred HHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccccCCCcchHHHHHHHHHHH
Q psy2267 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKE 121 (462)
Q Consensus 42 la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~GDGTTT~vvLa~~Ll~~ 121 (462)
|+++|++||||+||+|||+++.|+++|||||+||+++++++| |+|+|+++++++|++++||||||+++|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~----P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINH----PIAKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSS----HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhcc----chhhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 689999999999999999999999999999999999999998 5899999999999999999999999999999999
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHcCCC------chhhhHHHHHHHHhccC---
Q psy2267 122 GFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP-EEIAQVATISANGD------KAVGELISDAMKRVGKE--- 191 (462)
Q Consensus 122 ~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~~l~~va~~s~~~~------~~i~~li~~A~~~vg~~--- 191 (462)
+.+++++|+||..|++||+.|.+.+++.|+++++++++. +.+.++|++++++| +.|++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999876 89999999999998 79999999999444221
Q ss_pred c--eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEeccc-----ccCCHHh-----------HH
Q psy2267 192 G--VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSES-----KISSIQS-----------II 253 (462)
Q Consensus 192 g--~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~-----ki~s~~~-----------i~ 253 (462)
+ .|....|++.+| +++++|++|+++|.++.|++..+++++.+.++.+..... .+++.++ +.
T Consensus 157 ~~i~i~~i~g~~~~d-S~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 235 (485)
T PF00118_consen 157 DNIKIIKIPGGSISD-SELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLK 235 (485)
T ss_dssp GGEEEEEEESSSSGG-EEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHH
T ss_pred cchhhhhhccccccc-cccccceeeeccccccccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhc
Confidence 1 244567888875 999999999999999877666555555544444333211 0222222 56
Q ss_pred HHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCC
Q psy2267 254 PALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQ 333 (462)
Q Consensus 254 ~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~ 333 (462)
++++.+.+.|+++||++++|++.++++|..|+ |.++ .++++++|+|||.+|||++++ ++++++
T Consensus 236 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i-----~~v~~~~l~~i~~~tg~~ii~------~~~~l~ 298 (485)
T PF00118_consen 236 KILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVI-----RRVSKEDLERIARATGASIIS------SLDDLS 298 (485)
T ss_dssp HHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEE-----SSEHHHHHHHHHHHHTSBEBS------SCGGST
T ss_pred cccceEeeeccceeeeecccccccchhhhhhh------hhcc-----ccchHHHHHhhhcccCCcEec------cccccc
Confidence 88999999999999999999999999998664 4554 567899999999999999999 778888
Q ss_pred CCCCceeeEEEE---eeCceEEEEe---cCCCCeeEE--------------eechhhHHHHHhhhcCeEeeeehhhhccC
Q psy2267 334 ATDLGSVGEIVI---TKDDTLILKV---TSAPPCTCK--------------SCEKAPCITKNLITHYFIDIELLLISFDS 393 (462)
Q Consensus 334 ~~~LG~a~~v~i---~~~~t~ii~~---~~~~~~TI~--------------sl~DaL~vvk~~i~d~~vv~~~~~~~~~~ 393 (462)
++++|+|++++. +.++++++.. ..++.+||+ +++||++++|++++++++||
T Consensus 299 ~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp--------- 369 (485)
T PF00118_consen 299 DEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP--------- 369 (485)
T ss_dssp GGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE---------
T ss_pred chhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee---------
Confidence 888999999954 4444444432 135688886 89999999999999999999
Q ss_pred CCCCCCHH-HHHHHHHHHHH
Q psy2267 394 PQGKGKKE-DIDRRADQIRD 412 (462)
Q Consensus 394 ~~g~g~~e-~i~~r~~~~~~ 412 (462)
|||..| .++..+++...
T Consensus 370 --GGG~~e~~l~~~L~~~~~ 387 (485)
T PF00118_consen 370 --GGGATELHLSKALRKYAK 387 (485)
T ss_dssp --TTTHHHHHHHHHHHHHHH
T ss_pred --cCcchhhhhhhhHHHhhh
Confidence 999999 77666644433
No 37
>KOG0362|consensus
Probab=100.00 E-value=1.5e-53 Score=432.92 Aligned_cols=350 Identities=22% Similarity=0.270 Sum_probs=304.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccccCCCc
Q psy2267 29 PEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGT 108 (462)
Q Consensus 29 ~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~GDGT 108 (462)
+++..+|+++|+++++++||+|||+|||||++|++|+.++|||.+||+++++++|| +||||++++++|+++.||||
T Consensus 25 e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP----aakllv~a~~~q~~~iGDgt 100 (537)
T KOG0362|consen 25 EEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP----AAKLLVEATQMQEEEIGDGT 100 (537)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc----HHHHHHHHHHHHHHhhCCCc
Confidence 78899999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred chHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHcCC-----CchhhhHHH
Q psy2267 109 TTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSK-PVTTPEEIAQVATISANG-----DKAVGELIS 182 (462)
Q Consensus 109 TT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~-~v~~~~~l~~va~~s~~~-----~~~i~~li~ 182 (462)
+++++||++||++|.++|..|++|.+|++||++|...+++.|+++.. .+.+.++...++++++++ +++++++++
T Consensus 101 nfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa 180 (537)
T KOG0362|consen 101 NFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVA 180 (537)
T ss_pred eEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999764 333333333666666655 478999999
Q ss_pred HHHHHhccCc-----e--EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEe--cccc----cCCH
Q psy2267 183 DAMKRVGKEG-----V--ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL--SESK----ISSI 249 (462)
Q Consensus 183 ~A~~~vg~~g-----~--I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili--~d~k----i~s~ 249 (462)
+||..+.+.+ + +.+..|+++++ |.++.||+|++... +-++..++.++.+++|++.+ ++.| |+++
T Consensus 181 ~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A 257 (537)
T KOG0362|consen 181 KACVSILPLMSFNVDNIRVCKILGGGLED-SCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKGTVLLKNA 257 (537)
T ss_pred HHHHhhcccccccccceEEEEEecCCccc-ceeeEEEEeccccC--CcccccccceeEEEecCCCcccccCcceeeecCc
Confidence 9999998863 2 45689999997 99999999999865 44577788999999999777 4555 6777
Q ss_pred HhHH-----------HHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCe
Q psy2267 250 QSII-----------PALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGI 318 (462)
Q Consensus 250 ~~i~-----------~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~ 318 (462)
+++. ..++.+...|.+++++.+.+++.+|+++ ||+ +||++++++ |++|.|||+..||+
T Consensus 258 ~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrrlcrtvGA~ 326 (537)
T KOG0362|consen 258 KELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRRLCRTVGAT 326 (537)
T ss_pred HhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHHHHHHcCCc
Confidence 7654 3466677789999999999999999997 776 799999986 99999999999999
Q ss_pred EeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecC----CCCeeEE--------------eechhhHHHHHhhhc
Q psy2267 319 VFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTS----APPCTCK--------------SCEKAPCITKNLITH 379 (462)
Q Consensus 319 vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~----~~~~TI~--------------sl~DaL~vvk~~i~d 379 (462)
+.+ ++..+.++.||+|++|...+ +++.++.|.. .+..|++ +++|+++.+|.+++|
T Consensus 327 ~l~------rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d 400 (537)
T KOG0362|consen 327 ALP------RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSD 400 (537)
T ss_pred cch------hccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccC
Confidence 999 89999999999999998755 4555555553 2678886 999999999999999
Q ss_pred CeEeeeehhhhccCCCCCCCHH-HHHHHHHHHHHH
Q psy2267 380 YFIDIELLLISFDSPQGKGKKE-DIDRRADQIRDQ 413 (462)
Q Consensus 380 ~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~~~ 413 (462)
+++++ |+|..| ++..|+....+.
T Consensus 401 ~rLlp-----------GagatEieLak~i~~~g~~ 424 (537)
T KOG0362|consen 401 SRLLP-----------GAGATEIELAKQISSRGAT 424 (537)
T ss_pred Ccccc-----------CCchhHHHHHHHHHHhccc
Confidence 99999 999999 888887665543
No 38
>KOG0363|consensus
Probab=100.00 E-value=4e-53 Score=415.86 Aligned_cols=347 Identities=23% Similarity=0.318 Sum_probs=292.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecC--CCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQS--WGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~--~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q 100 (462)
..-+.|+.+|...+-|...+.|+|+|||||+||+|++... .|...+||||+||+|++.+.+ |+||+++++++-|
T Consensus 11 ~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDn----paAkvLv~~S~vQ 86 (527)
T KOG0363|consen 11 ATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDN----PAAKVLVDISKVQ 86 (527)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCC----chhhheecccccc
Confidence 3457899999999999999999999999999999999853 467899999999999999985 6999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHcCCC-
Q psy2267 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-----PEEIAQVATISANGD- 174 (462)
Q Consensus 101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~~s~~~~- 174 (462)
|+|+|||||+|+|||.+||+|+.+|+++.+||+.|++||++|...+.+.|.+.++.-.+ +++|.++|+|.+++|
T Consensus 87 D~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKi 166 (527)
T KOG0363|consen 87 DDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKI 166 (527)
T ss_pred ccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875442 578999999999874
Q ss_pred -----chhhhHHHHHHHHhccCce-----EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEeccc
Q psy2267 175 -----KAVGELISDAMKRVGKEGV-----ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSES 244 (462)
Q Consensus 175 -----~~i~~li~~A~~~vg~~g~-----I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ 244 (462)
++|+++.++|+.++...++ |.++.||+++| |.+=+|+.+++.+-- +-| ..++|+.||+.+.
T Consensus 167 Lsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d-SfLDeGFlL~K~igv-~qp-------kriena~iLIANT 237 (527)
T KOG0363|consen 167 LSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED-SFLDEGFLLDKKIGV-NQP-------KRIENAKILIANT 237 (527)
T ss_pred HHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-ccccccceeccccCC-CCc-------ccccccceEEecC
Confidence 7899999999999976553 66789999997 999999999986531 123 3456666666321
Q ss_pred -------c-------cCCHH-----------hHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCC
Q psy2267 245 -------K-------ISSIQ-----------SIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPG 299 (462)
Q Consensus 245 -------k-------i~s~~-----------~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~ 299 (462)
| +.+.. .+...++++.++|+|++|...-|-+...++|..- +|+++...
T Consensus 238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHA- 310 (527)
T KOG0363|consen 238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHA- 310 (527)
T ss_pred CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecc-
Confidence 1 22322 2346788999999999999999999999998632 58887644
Q ss_pred CCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEE-EeeCceEEEEecCC---CCeeEE-----------
Q psy2267 300 FGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIV-ITKDDTLILKVTSA---PPCTCK----------- 364 (462)
Q Consensus 300 ~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~-i~~~~t~ii~~~~~---~~~TI~----------- 364 (462)
.-+-+|||+..|||.++| ++++++...||+|+.++ +--++..++.|+|+ .+|||+
T Consensus 311 ----DFdGiERLalvtGGeI~S------TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDE 380 (527)
T KOG0363|consen 311 ----DFDGIERLALVTGGEIVS------TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDE 380 (527)
T ss_pred ----cchhHHHHhhcccceeee------ccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHH
Confidence 457899999999999999 89999999999999886 22244568999997 499998
Q ss_pred ---eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHH-HHHHHHH
Q psy2267 365 ---SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDI-DRRADQI 410 (462)
Q Consensus 365 ---sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i-~~r~~~~ 410 (462)
|+||||||+.+..+++|+++ |+|.+|.+ +.-+.+.
T Consensus 381 aeRslHDALcVLaqtv~esrvv~-----------GgG~sEm~Ma~av~~~ 419 (527)
T KOG0363|consen 381 AERSLHDALCVLAQTVKESRVVL-----------GGGCSEMLMAKAVDKE 419 (527)
T ss_pred HHHHHHHHHHHHHHHhccceeee-----------cCCcHHHHHHHHHHHH
Confidence 99999999999999999999 99999944 3334333
No 39
>KOG0360|consensus
Probab=100.00 E-value=5.6e-51 Score=411.66 Aligned_cols=355 Identities=24% Similarity=0.325 Sum_probs=302.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccc
Q psy2267 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEE 103 (462)
Q Consensus 24 ~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~ 103 (462)
+...|+.+|..|..++..++++|++||||-|+|||+++.+|...+||||+||++.++++|| ++|+|++.|+.|+++
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HP----a~KiLvelaq~qd~e 88 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHP----AAKVLVELAQLQDEE 88 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcch----HHHHHHHHHHhcccc
Confidence 4678899999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhh-cCCCCC--CHHHHHHHHHHHcCCC------
Q psy2267 104 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE-LSKPVT--TPEEIAQVATISANGD------ 174 (462)
Q Consensus 104 ~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~-~s~~v~--~~~~l~~va~~s~~~~------ 174 (462)
+|||||+++++|++||+++.+|+..++||+.++.||+.|+..+++++.+ ++.|++ .++.|.++|+++++++
T Consensus 89 vgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 89 VGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred ccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccch
Confidence 9999999999999999999999999999999999999999999999976 677887 5788999999999876
Q ss_pred chhhhHHHHHHHHhcc---Cc---------eEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec
Q psy2267 175 KAVGELISDAMKRVGK---EG---------VITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS 242 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~---~g---------~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~ 242 (462)
+++++++++|+..+.- +| +|-+-.|++.. ||.++.|+.++....+..|+....+.|+++.+..+-=+
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~-eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~ 247 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQI-ESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKT 247 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccch-hheeecceeeeccHhhhccccccccceeeeEecccccc
Confidence 6899999999998752 23 24556899877 49999999999999999999998888888777654322
Q ss_pred ccc------cCCHHhH-----------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCch
Q psy2267 243 ESK------ISSIQSI-----------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRK 305 (462)
Q Consensus 243 d~k------i~s~~~i-----------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk 305 (462)
..+ +.+++.+ ..-++++...|.|+|+++++|||.++.+|+.. +++|| +|.+|
T Consensus 248 km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~vea------gamAV-----rR~~k 316 (545)
T KOG0360|consen 248 KMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEA------GAMAV-----RRCKK 316 (545)
T ss_pred cccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhh-----HHHHH
Confidence 222 3344332 24466788899999999999999999999855 46776 57789
Q ss_pred hhHHHHHHHhCCeEeccCCCCCccC------CCCCCCCceeeEEEEee-CceEEEEecCCC--CeeEE------------
Q psy2267 306 ATLQDLAVATGGIVFGDEASPVKLE------DLQATDLGSVGEIVITK-DDTLILKVTSAP--PCTCK------------ 364 (462)
Q Consensus 306 ~~LedIa~~TGa~vis~~~~~~~l~------~~~~~~LG~a~~v~i~~-~~t~ii~~~~~~--~~TI~------------ 364 (462)
.+|++||++||+++++ +|. .+.+..+|+|+.|...+ .+.-+|.+++.+ .|+|+
T Consensus 317 ~dlk~iakatGat~~s------Sla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~~aSiILrgaNd~~~DEm 390 (545)
T KOG0360|consen 317 EDLKRIAKATGATLLS------SLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKATSASIILRGANDFMLDEM 390 (545)
T ss_pred HHHHHHHHhhCCeeee------hhhccccccccChhhccchhHHHHHhcccceeEEeccCccceeeEEEecCCcccHhhh
Confidence 9999999999999999 555 56678899999987543 333455566654 45554
Q ss_pred --eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 365 --SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 365 --sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
++|||||++|+.++.+.+|| |+|+.| +++..++.+.
T Consensus 391 ers~hdaL~VlkrtLes~~vvp-----------GGG~vE~aLs~yle~~a 429 (545)
T KOG0360|consen 391 ERSLHDALCVLKRTLESKSVVP-----------GGGAVETALSIYLENFA 429 (545)
T ss_pred ccchhhHHHHHHHHhccCcccc-----------CccHHHHHHHHHHHhhc
Confidence 99999999999999999999 999999 6666655443
No 40
>KOG0364|consensus
Probab=100.00 E-value=9.2e-48 Score=385.29 Aligned_cols=369 Identities=22% Similarity=0.325 Sum_probs=318.6
Q ss_pred chHHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHH
Q psy2267 14 TPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLV 93 (462)
Q Consensus 14 ~~~~~~~~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll 93 (462)
.|+|+.+.......|..++..|+.+.+.+||.++|+|||+.|-||+.++.|.+..||||..|+++|++.|| +|+-+
T Consensus 3 apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahp----aaksm 78 (527)
T KOG0364|consen 3 APVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHP----AAKSM 78 (527)
T ss_pred CceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCc----chhhH
Confidence 47777777777888999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHc
Q psy2267 94 QDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT--TPEEIAQVATISA 171 (462)
Q Consensus 94 ~~~a~~q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~ 171 (462)
.+++.+||+++|||||||++||+|+|.++..++++|+||+.++++|.+|++.++..+++++.|++ +...+.++..++.
T Consensus 79 iel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v 158 (527)
T KOG0364|consen 79 IELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSV 158 (527)
T ss_pred hhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998888776 6677888999888
Q ss_pred CCC------chhhhHHHHHHHHhccC-ce---------EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEee
Q psy2267 172 NGD------KAVGELISDAMKRVGKE-GV---------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQ 235 (462)
Q Consensus 172 ~~~------~~i~~li~~A~~~vg~~-g~---------I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~ 235 (462)
.++ +.++++..+|+.+|+.+ |. +.+.+|+.+++ |++++|+.+.+...||.|-...++.++.|.
T Consensus 159 ~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~-s~vl~Gv~~nkdv~Hpkmrr~IenprivLl 237 (527)
T KOG0364|consen 159 GTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLED-SCVLKGVMINKDVTHPKMRRAIENPRIVLL 237 (527)
T ss_pred hhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccc-cceecceeeccccCcHHHHHHhhcCcEEEe
Confidence 765 46788999999999865 32 34579999996 999999999999999988777777778887
Q ss_pred ceeEEecccc------c---CCHH--------hHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecC
Q psy2267 236 DALVLLSESK------I---SSIQ--------SIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAP 298 (462)
Q Consensus 236 n~~Ili~d~k------i---~s~~--------~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p 298 (462)
+|++..-+.. + .++. ++..+.+.+.....+|||+.++++|.|++||..++ +.
T Consensus 238 D~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~------iT----- 306 (527)
T KOG0364|consen 238 DCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN------IT----- 306 (527)
T ss_pred cCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC------ch-----
Confidence 7776653211 1 1222 23345666777788899999999999999998553 33
Q ss_pred CCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCce-eeEEEEee-CceEEEEecCC---CCeeEE---------
Q psy2267 299 GFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS-VGEIVITK-DDTLILKVTSA---PPCTCK--------- 364 (462)
Q Consensus 299 ~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~-a~~v~i~~-~~t~ii~~~~~---~~~TI~--------- 364 (462)
++++.||.+..|||++|||++++ +.+++.+.+.|+ |+.+++.+ .+.+|-+|..| ++|||+
T Consensus 307 ~~rr~rKtDn~ria~acga~iv~------rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil 380 (527)
T KOG0364|consen 307 AIRRLRKTDNNRIARACGARIVN------RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDIL 380 (527)
T ss_pred hhhhhhccccchhhhhcCceecc------ChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHH
Confidence 36789999999999999999999 889999999997 88999876 56677778876 599997
Q ss_pred -----eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHHHHHH
Q psy2267 365 -----SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIRDQIE 415 (462)
Q Consensus 365 -----sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~~~~~ 415 (462)
.++||..+.|+++-+|++|| |+|+.| +++..+.|-..+++
T Consensus 381 ~e~ernlqda~~varn~ii~PklvP-----------GGGAtEMAvs~~L~qksa~~~ 426 (527)
T KOG0364|consen 381 NEVERNLQDAMGVARNVIINPKLVP-----------GGGATEMAVSHELRQKSALMT 426 (527)
T ss_pred HHHHHHhhhHHHHHHHhccCCcccC-----------CccHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999 999999 88888877555553
No 41
>KOG0359|consensus
Probab=100.00 E-value=1e-42 Score=348.61 Aligned_cols=346 Identities=21% Similarity=0.311 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhcccccCCCc
Q psy2267 29 PEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGT 108 (462)
Q Consensus 29 ~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~~~GDGT 108 (462)
..+...|+.+...+.+.+++.+||+|..||++++.|.+.+|+||.+.+++|+++|| -|-++..+|..|++..||||
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhP----Ta~lIakaatAqdd~tGDGt 91 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHP----TASLIAKVATAQDDITGDGT 91 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCc----hHHHHHHHHHHhhcccCCCc
Confidence 44778899999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred chHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCC------chhhhHHH
Q psy2267 109 TTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGD------KAVGELIS 182 (462)
Q Consensus 109 TT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~------~~i~~li~ 182 (462)
|++|+|.++|++++..++..|+||..|..||+.|.+.++++|++.+.++ +.+.|..||++|++++ +.++++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv 170 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVV 170 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHH
Confidence 9999999999999999999999999999999999999999999777776 4778999999999987 56889999
Q ss_pred HHHHHhcc-CceE-----EE--ecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCC------
Q psy2267 183 DAMKRVGK-EGVI-----TV--KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISS------ 248 (462)
Q Consensus 183 ~A~~~vg~-~g~I-----~v--~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s------ 248 (462)
+|+..+.+ ++.| .+ -.-++..| ..+++|.++|+|..||.|+++.+++-+-+.|..+......|++
T Consensus 171 ~aVl~i~~~~~~idl~mveim~mq~~s~~d-T~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYst 249 (520)
T KOG0359|consen 171 DSVLCIRRQEEPIDLFMVEIMEMQHKSLHD-TSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYST 249 (520)
T ss_pred hhheeeccCCCCcchhHHHhhhhccCchhh-hHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccc
Confidence 99998873 3322 11 23344454 8999999999999999998876665555555555444444542
Q ss_pred HHh---H--------HHHHHHHHhcC---CCE-EEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHH
Q psy2267 249 IQS---I--------IPALELANSKR---KPL-VILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAV 313 (462)
Q Consensus 249 ~~~---i--------~~~le~i~~~g---~~l-vIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~ 313 (462)
.+| + ..-+.++.+.+ +.+ ||.+++|||..|..|+.+ +|+|+ ++.++..||||..
T Consensus 250 a~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaL-----RRAKRRNmERL~l 318 (520)
T KOG0359|consen 250 AEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILAL-----RRAKRRNMERLVL 318 (520)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHH-----HHHhhhhHHHHHH
Confidence 222 1 12234444433 234 455899999999999855 46774 5677889999999
Q ss_pred HhCCeEeccCCCCCccCCCCCCCCceeeEEEE---eeCceEEEE-ecCCCCeeEE--------------eechhhHHHHH
Q psy2267 314 ATGGIVFGDEASPVKLEDLQATDLGSVGEIVI---TKDDTLILK-VTSAPPCTCK--------------SCEKAPCITKN 375 (462)
Q Consensus 314 ~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i---~~~~t~ii~-~~~~~~~TI~--------------sl~DaL~vvk~ 375 (462)
+|||..++ ++++++|+.||+|+.|+. +++.+|||. ...+++|||+ +++|+|..+++
T Consensus 319 acGG~a~n------svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~n 392 (520)
T KOG0359|consen 319 ACGGEAVN------SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKN 392 (520)
T ss_pred hhccceec------ccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHH
Confidence 99999998 899999999999999985 556666665 2224688987 99999999999
Q ss_pred hhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHH
Q psy2267 376 LITHYFIDIELLLISFDSPQGKGKKE-DIDRRAD 408 (462)
Q Consensus 376 ~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~ 408 (462)
.++|+.++| |+|+.+ +....+.
T Consensus 393 tl~d~~~i~-----------Gaga~~va~~~~lr 415 (520)
T KOG0359|consen 393 TLEDKCGIP-----------GAGAFEVALGRHLR 415 (520)
T ss_pred Hhhhccccc-----------CchHHHHHHHHHHH
Confidence 999999999 999988 5555544
No 42
>KOG0357|consensus
Probab=100.00 E-value=1.3e-39 Score=317.93 Aligned_cols=255 Identities=28% Similarity=0.371 Sum_probs=225.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhccc
Q psy2267 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102 (462)
Q Consensus 23 k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q~~ 102 (462)
+...+|.++.++++-+.+++|.++++||||+|++|+...+.|...+|||| .| +.++++...+..|++
T Consensus 21 ~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~----~IakLmv~LS~sqd~ 87 (400)
T KOG0357|consen 21 KDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VH----QIAKLIVILSKSQDD 87 (400)
T ss_pred CchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------ch----HHHHHHHHhcccchh
Confidence 56789999999999999999999999999999999999999999999999 33 599999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhHHH
Q psy2267 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELIS 182 (462)
Q Consensus 103 ~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~li~ 182 (462)
+.|||||.+++|++++++++.+++..|+||..|..||+++...++++|.+.+.+++
T Consensus 88 eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------------------------ 143 (400)
T KOG0357|consen 88 EIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------------------------ 143 (400)
T ss_pred hhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc------------------------
Confidence 99999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHHhc
Q psy2267 183 DAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSK 262 (462)
Q Consensus 183 ~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~~~ 262 (462)
+-.+++.++++
T Consensus 144 ---------------------------------------------------------------------f~emi~~vK~~ 154 (400)
T KOG0357|consen 144 ---------------------------------------------------------------------FEEMIQQIKET 154 (400)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHhh
Confidence 44567888999
Q ss_pred CCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeE
Q psy2267 263 RKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGE 342 (462)
Q Consensus 263 g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~ 342 (462)
|.+++||+|+|||+|.|+|..|.+ |..+|+..-++|-||++|||++++ ++++++++.||+|+.
T Consensus 155 ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp------rF~eL~~~kLG~agl 217 (400)
T KOG0357|consen 155 GANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP------RFSELTAEKLGFAGL 217 (400)
T ss_pred CCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec------cHhhhCHhhccccce
Confidence 999999999999999999998876 667888899999999999999999 999999999999999
Q ss_pred EEE---eeCceEEEEecCC---CCeeEE--------------eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-
Q psy2267 343 IVI---TKDDTLILKVTSA---PPCTCK--------------SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE- 401 (462)
Q Consensus 343 v~i---~~~~t~ii~~~~~---~~~TI~--------------sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e- 401 (462)
|+- +..+...+.++.| ++-||. |+||||||+||+++|.++|| |+|+.|
T Consensus 218 VrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivY-----------gGGaaEi 286 (400)
T KOG0357|consen 218 VREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY-----------GGGAAEI 286 (400)
T ss_pred EEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEe-----------cCchHHh
Confidence 873 2223334444554 466764 99999999999999999999 999888
Q ss_pred HHHHHHHHHH
Q psy2267 402 DIDRRADQIR 411 (462)
Q Consensus 402 ~i~~r~~~~~ 411 (462)
.-+..+++..
T Consensus 287 scslav~~ea 296 (400)
T KOG0357|consen 287 SCALAVSQEA 296 (400)
T ss_pred hhhhHhhHhh
Confidence 3333444433
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.91 E-value=2.8e-23 Score=198.07 Aligned_cols=177 Identities=33% Similarity=0.497 Sum_probs=147.8
Q ss_pred HHHHHHHHHHcCC-----CchhhhHHHHHHHHhcc------CceE--EEecCCCcccceeEEEEEEEecccCCCCccCcc
Q psy2267 161 EEIAQVATISANG-----DKAVGELISDAMKRVGK------EGVI--TVKDGKTLTDELEVIEGMKFDRGYISPYFINTA 227 (462)
Q Consensus 161 ~~l~~va~~s~~~-----~~~i~~li~~A~~~vg~------~g~I--~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~ 227 (462)
+.+.++|++|+++ ++.+++++++|+..+++ .+.| .+.+|+++.| +++++|++|+++|.+|+|++
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~d-s~li~Gv~~~~~~~~~~m~~-- 78 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLED-SELVVGVVFDKGYASPYMPK-- 78 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhh-ceeEeeEEEeccccCCCCCe--
Confidence 4688999999994 46899999999999987 3444 4578999886 99999999999999999854
Q ss_pred ccceeEeeceeEEecccccCCHHhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhh
Q psy2267 228 KGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307 (462)
Q Consensus 228 ~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~ 307 (462)
.++||+|++++..+.. +++++++|++.|+++|..+ +|++|+. .++.+
T Consensus 79 -----~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~ 125 (209)
T cd03333 79 -----RLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKED 125 (209)
T ss_pred -----EcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHH
Confidence 4667777777666654 8888888999999999753 5788864 56899
Q ss_pred HHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEee-CceEEEEecCC---CCeeEE--------------eechh
Q psy2267 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK-DDTLILKVTSA---PPCTCK--------------SCEKA 369 (462)
Q Consensus 308 LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~-~~t~ii~~~~~---~~~TI~--------------sl~Da 369 (462)
|+|||++|||++++ +++++++++||+|+++++.+ ++.+++.|++| +.|||+ +++||
T Consensus 126 l~~ia~~tga~ii~------~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~da 199 (209)
T cd03333 126 LERIARATGATIVS------SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDA 199 (209)
T ss_pred HHHHHHHHCCEEec------ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHH
Confidence 99999999999999 78899999999999999876 45666677764 578886 99999
Q ss_pred hHHHHHhhhc
Q psy2267 370 PCITKNLITH 379 (462)
Q Consensus 370 L~vvk~~i~d 379 (462)
++++++++++
T Consensus 200 l~~~~~~~~~ 209 (209)
T cd03333 200 LCAVRAAVEE 209 (209)
T ss_pred HHHHHHHhhC
Confidence 9999999875
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.89 E-value=2.3e-22 Score=198.39 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=158.4
Q ss_pred chhhhHHHHHHHHhccC---c-------e--EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEec
Q psy2267 175 KAVGELISDAMKRVGKE---G-------V--ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLS 242 (462)
Q Consensus 175 ~~i~~li~~A~~~vg~~---g-------~--I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~ 242 (462)
+.|++++++|+..+.++ + . |.+.+|+++.| +++++|++|++++.++.|++..+++++.+.++++...
T Consensus 21 ~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~d-S~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~ 99 (261)
T cd03334 21 DILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSD-SEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQ 99 (261)
T ss_pred HHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHH-cEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccc
Confidence 67899999999988532 1 2 44578999986 9999999999999999999999999999999998874
Q ss_pred c--cccCCHHhH--------HHHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHH
Q psy2267 243 E--SKISSIQSI--------IPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLA 312 (462)
Q Consensus 243 d--~ki~s~~~i--------~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa 312 (462)
. .+.++++++ ...++++...|+++|+++++|++.|+++|..+ +|++++ ++++++|+|||
T Consensus 100 ~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v~~~dl~rIa 168 (261)
T cd03334 100 RVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NVKPSVLERIS 168 (261)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ecCHHHHHHHH
Confidence 3 333334433 35788888999999999999999999999744 478875 56689999999
Q ss_pred HHhCCeEeccCCCCCc-cCCCCCCCCceeeEEEEee--C----ceEEEEecCC---CCeeEE--------------eech
Q psy2267 313 VATGGIVFGDEASPVK-LEDLQATDLGSVGEIVITK--D----DTLILKVTSA---PPCTCK--------------SCEK 368 (462)
Q Consensus 313 ~~TGa~vis~~~~~~~-l~~~~~~~LG~a~~v~i~~--~----~t~ii~~~~~---~~~TI~--------------sl~D 368 (462)
++|||++++ + .+++++++||+|++|++.+ + +..++.|++| +.|||+ +++|
T Consensus 169 ~~tGa~ii~------~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~D 242 (261)
T cd03334 169 RCTGADIIS------SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEF 242 (261)
T ss_pred HHhCCEEec------ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHH
Confidence 999999999 5 3578899999999999765 2 2567778876 478986 9999
Q ss_pred hhHHHHHhhhcCeEee
Q psy2267 369 APCITKNLITHYFIDI 384 (462)
Q Consensus 369 aL~vvk~~i~d~~vv~ 384 (462)
|+++++++..+.++..
T Consensus 243 al~v~~~~~le~~~~~ 258 (261)
T cd03334 243 MVFAAYHLKLETSFLA 258 (261)
T ss_pred HHHHHHHHHHhHHHHh
Confidence 9999999999887765
No 45
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.9e-12 Score=134.80 Aligned_cols=154 Identities=21% Similarity=0.174 Sum_probs=121.4
Q ss_pred cceeEeeceeEEecc------cccCCHHhHH------------HHHHHHHhcCCC-EEEEecCCchhHHHHHHhhhhccC
Q psy2267 229 GAKVEFQDALVLLSE------SKISSIQSII------------PALELANSKRKP-LVILAEDVDGEALSTLVVNRLKIG 289 (462)
Q Consensus 229 ~~kv~l~n~~Ili~d------~ki~s~~~i~------------~~le~i~~~g~~-lvIia~~I~~~aL~~L~~Nk~~~~ 289 (462)
++++.+.|++|.... ..+++.++++ .+++.+.+.|.+ ++|++++|+|.++++|..+
T Consensus 218 ~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~----- 292 (524)
T COG0459 218 NPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI----- 292 (524)
T ss_pred cceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh-----
Confidence 566777777765532 2244444432 345566678999 8999999999999999744
Q ss_pred ceEEEEecCCCCCCchhhH-HHHHHHhCCeEeccCCCCCccCCCCCCCCce--eeEEEEee-CceEEEEecCC-----CC
Q psy2267 290 LQVAAVKAPGFGDNRKATL-QDLAVATGGIVFGDEASPVKLEDLQATDLGS--VGEIVITK-DDTLILKVTSA-----PP 360 (462)
Q Consensus 290 ~~v~aVk~p~~g~~rk~~L-edIa~~TGa~vis~~~~~~~l~~~~~~~LG~--a~~v~i~~-~~t~ii~~~~~-----~~ 360 (462)
.|+++ |+..++++ ++|+.+|||+.++ .+++.++..+|. |..|+..+ .++....|+++ +.
T Consensus 293 -~Ilt~-----~~v~~~dl~~~l~~~~ga~~v~------~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T COG0459 293 -AILTG-----RRVKKEDLGERLAKLGGAKIVS------VLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGV 360 (524)
T ss_pred -cceec-----ceecchhhHHHHHHccCceEEe------ecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCe
Confidence 46764 56678899 8999999999999 789999999999 99999764 34555566665 36
Q ss_pred eeEE--------------eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 361 CTCK--------------SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 361 ~TI~--------------sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
|||+ ++|||||++|++++++++|| |+|..+ +++.+++.+
T Consensus 361 ~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~-----------GGGa~e~~~a~~L~~~ 414 (524)
T COG0459 361 ATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVP-----------GGGAAEIEAALRLREY 414 (524)
T ss_pred EEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEe-----------CCCHHHHHHHHHHHhh
Confidence 8876 99999999999999999999 999999 888888875
No 46
>KOG0230|consensus
Probab=98.93 E-value=4.4e-09 Score=120.23 Aligned_cols=185 Identities=15% Similarity=0.246 Sum_probs=133.6
Q ss_pred hhhHHHHHHHHhccC----------ce--EEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEe--c
Q psy2267 177 VGELISDAMKRVGKE----------GV--ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL--S 242 (462)
Q Consensus 177 i~~li~~A~~~vg~~----------g~--I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili--~ 242 (462)
+..++-+|...+.++ +. |..+.||+..| |+++.|++|.+...+-.|.+..++.++.+...++.. .
T Consensus 337 i~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~d-S~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqri 415 (1598)
T KOG0230|consen 337 ITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVD-SEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRI 415 (1598)
T ss_pred HHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCccc-ceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhh
Confidence 455566666666553 12 45578888765 999999999999888777666554444333333322 1
Q ss_pred ccccCCHHhHH--------HHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHH
Q psy2267 243 ESKISSIQSII--------PALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVA 314 (462)
Q Consensus 243 d~ki~s~~~i~--------~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~ 314 (462)
..++.|++.++ ..+..+.....+++++.++|++.|+.+|.. .++.++. +++..-|+||+++
T Consensus 416 sn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~----k~I~lvl-------nvK~s~leRIsR~ 484 (1598)
T KOG0230|consen 416 SNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD----KGISLVL-------NVKRSLLERISRC 484 (1598)
T ss_pred hccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc----cCeEEEE-------eccHHHHHHHHHH
Confidence 34466666543 345566667889999999999999999862 2333222 5667899999999
Q ss_pred hCCeEeccCCCCCccCCCCCCCCceeeEEEEee------CceEEEEecCCC---CeeEE---eechhhHHHHHhhhc
Q psy2267 315 TGGIVFGDEASPVKLEDLQATDLGSVGEIVITK------DDTLILKVTSAP---PCTCK---SCEKAPCITKNLITH 379 (462)
Q Consensus 315 TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~------~~t~ii~~~~~~---~~TI~---sl~DaL~vvk~~i~d 379 (462)
|||.|++ +++.++...||+|..+++.+ -.+|+.+|++|+ +|||+ +..+-|.-+|.++.=
T Consensus 485 tga~I~~------siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~ 555 (1598)
T KOG0230|consen 485 TGADIVP------SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQY 555 (1598)
T ss_pred hcCceec------chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHH
Confidence 9999998 67889999999999988643 257888899984 99998 888888888887643
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=97.22 E-value=4.1e-05 Score=83.11 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=50.6
Q ss_pred cCCCEEEEecCCch-----hHHHHHHhhhhcc----CceEEEEecCCCCCCchhhHHHHHHHhCCeEec
Q psy2267 262 KRKPLVILAEDVDG-----EALSTLVVNRLKI----GLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321 (462)
Q Consensus 262 ~g~~lvIia~~I~~-----~aL~~L~~Nk~~~----~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis 321 (462)
...++.|..+++++ +++..++.|+.++ +.++++++.| +++.....|++..++++.++..
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~ 313 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSD 313 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCH
Confidence 34588899999999 8888888888876 5589999988 9999999999999999988766
No 48
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=92.62 E-value=0.1 Score=57.22 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=31.0
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||||++|++++|+ +|| |+|+.| +++..++++
T Consensus 394 ~i~DAl~~~~~a~~~g-~Vp-----------GGGa~e~~ls~~L~~~ 428 (542)
T PRK12849 394 RVEDALNATRAAVEEG-IVP-----------GGGVALLRAAKALDEL 428 (542)
T ss_pred HHHHHHHHHHHHHHcC-eec-----------CCCHHHHHHHHHHHHh
Confidence 9999999999999997 999 999999 888877765
No 49
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=92.04 E-value=0.11 Score=56.54 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=30.8
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||+|++|++++|+ +|| |+|+.| +++..++++
T Consensus 392 ~i~Dal~~~k~a~~~g-~Vp-----------GGGa~e~~~s~~L~~~ 426 (520)
T cd03344 392 RVEDALNATRAAVEEG-IVP-----------GGGVALLRASPALDKL 426 (520)
T ss_pred HHHHHHHHHHHHHhcC-CCc-----------CCcHHHHHHHHHHHHh
Confidence 9999999999999997 999 999999 777777655
No 50
>PTZ00114 Heat shock protein 60; Provisional
Probab=91.60 E-value=0.14 Score=56.35 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=30.5
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||||++|++++++ +|| |+|+.| +++..++++
T Consensus 407 ~i~Dal~~~k~a~~~g-vVp-----------GGGa~e~~~s~~L~~~ 441 (555)
T PTZ00114 407 RIEDALNATRAAVEEG-IVP-----------GGGVALLRASKLLDKL 441 (555)
T ss_pred HHHHHHHHHHHHHhcC-ccc-----------CCcHHHHHHHHHHHHH
Confidence 9999999999999987 999 999999 777777655
No 51
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=90.99 E-value=0.16 Score=55.64 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=30.6
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||||++|++++|+ +|| |+|+.| +++.+++++
T Consensus 395 ~i~DAl~~~k~a~~~g-~Vp-----------GGGa~e~~~s~~L~~~ 429 (544)
T PRK12850 395 RVDDALHATRAAVEEG-IVP-----------GGGVALLRARSALRGL 429 (544)
T ss_pred HHHHHHHHHHHHHhcC-Ccc-----------CCcHHHHHHHHHHHhc
Confidence 9999999999999995 999 999999 787777655
No 52
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=90.40 E-value=0.2 Score=54.69 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=29.9
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQ 409 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~ 409 (462)
+++||+|++|++++|+ +|| |+|+.| +++.++++
T Consensus 393 ~i~Dal~~~r~a~~~g-~Vp-----------GGGa~e~~~s~~L~~ 426 (524)
T TIGR02348 393 RVEDALNATRAAVEEG-IVP-----------GGGVALLRAAAALEG 426 (524)
T ss_pred HHHHHHHHHHHHHhcC-Ccc-----------CCcHHHHHHHHHHHH
Confidence 9999999999999997 999 999999 77777764
No 53
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=90.17 E-value=0.2 Score=54.98 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=30.8
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||||++|++++|+ +|| |+|+.| +++.+++++
T Consensus 394 ~i~Dal~~vk~al~~g-~Vp-----------GGGa~e~~~s~~L~~~ 428 (542)
T PRK00013 394 RVEDALHATRAAVEEG-IVP-----------GGGVALLRAAPALEAL 428 (542)
T ss_pred HHHHHHHHHHHHHHcC-ccc-----------CcHHHHHHHHHHHHHh
Confidence 9999999999999996 999 999999 888777755
No 54
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=89.95 E-value=0.24 Score=54.37 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=30.9
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
+++||+|++|++++|+ +|| |+|+.| +++..++++.
T Consensus 395 ~i~DAl~a~~~a~~~g-~Vp-----------GGGa~e~~~s~~L~~~~ 430 (545)
T PRK12852 395 RVEDALNATRAAVQEG-IVP-----------GGGVALLRAKKAVGRIN 430 (545)
T ss_pred HHHHHHHHHHHHHhcC-CCc-----------CchHHHHHHHHHHHHhh
Confidence 9999999999999996 999 999999 7777776553
No 55
>PRK14104 chaperonin GroEL; Provisional
Probab=89.81 E-value=0.23 Score=54.47 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=30.8
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||||++|++++|+ +|| |+|..+ +++..++++
T Consensus 395 ~i~Dal~a~~~ai~~g-~Vp-----------GGGa~e~~~s~~L~~~ 429 (546)
T PRK14104 395 RVDDAMHATRAAVEEG-IVP-----------GGGVALLRASEQLKGI 429 (546)
T ss_pred HHHHHHHHHHHHHHcC-cCc-----------CchHHHHHHHHHHHHh
Confidence 9999999999999997 999 999999 787777755
No 56
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=88.48 E-value=0.27 Score=54.57 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=31.1
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
+++||||++|++++++ +|| |+|..| +++..++++.
T Consensus 449 ~i~DAl~avk~ai~~g-vVp-----------GGGa~el~ls~~L~~~~ 484 (600)
T PLN03167 449 RVEDALNATKAAVEEG-IVV-----------GGGCTLLRLASKVDAIK 484 (600)
T ss_pred HHHHHHHHHHHHHhcC-CCc-----------cHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999 999999 7777776553
No 57
>CHL00093 groEL chaperonin GroEL
Probab=88.41 E-value=0.34 Score=52.93 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=30.7
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQI 410 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~ 410 (462)
+++||+|++|++++|+ +|| |+|+.| +++.+++++
T Consensus 394 ~i~DAl~a~r~a~~~g-vVp-----------GGGa~e~~~s~~L~~~ 428 (529)
T CHL00093 394 RLEDAINATKAAVEEG-IVP-----------GGGATLVHLSENLKTW 428 (529)
T ss_pred HHHHHHHHHHHHHHcC-ccc-----------CCcHHHHHHHHHHHHH
Confidence 9999999999999997 999 999999 777777655
No 58
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=88.22 E-value=0.36 Score=52.93 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=31.0
Q ss_pred eechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHH-HHHHHHHHHH
Q psy2267 365 SCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKE-DIDRRADQIR 411 (462)
Q Consensus 365 sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e-~i~~r~~~~~ 411 (462)
+++||||++|++++|+ +|| |+|+.| +++..++++.
T Consensus 395 ~i~DAl~a~~~al~~g-~Vp-----------GGGa~e~~~s~~L~~~~ 430 (541)
T PRK12851 395 RVDDALHATRAAVEEG-IVP-----------GGGVALLRAVKALDKLE 430 (541)
T ss_pred HHHHHHHHHHHHHHcC-ccc-----------CchHHHHHHHHHHHHHh
Confidence 9999999999999996 999 999999 7777776553
No 59
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=85.36 E-value=0.24 Score=54.14 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=50.5
Q ss_pred HHHHHHhccCceEEEecCCCccc-ceeEEEEEEEecccCCCCccCccc---cceeEeeceeEEecccccC
Q psy2267 182 SDAMKRVGKEGVITVKDGKTLTD-ELEVIEGMKFDRGYISPYFINTAK---GAKVEFQDALVLLSESKIS 247 (462)
Q Consensus 182 ~~A~~~vg~~g~I~v~~G~~~~d-es~lv~G~~~d~g~~sp~~~~~~~---~~kv~l~n~~Ili~d~ki~ 247 (462)
.+++..++.++.+.+.++.++++ +..-+.|..++.+|+.|||+.+.+ +++..++||+|++++.+++
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMD 247 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCC
Confidence 45566666666666666655554 355567999999999999988776 7888999999999998874
No 60
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=82.76 E-value=0.53 Score=51.33 Aligned_cols=66 Identities=17% Similarity=0.397 Sum_probs=49.5
Q ss_pred HHHHHHhccCceEEEecCCCcccceeEE--EEEEEecccCCCCccCccc---cceeEeeceeEEecccccCC
Q psy2267 182 SDAMKRVGKEGVITVKDGKTLTDELEVI--EGMKFDRGYISPYFINTAK---GAKVEFQDALVLLSESKISS 248 (462)
Q Consensus 182 ~~A~~~vg~~g~I~v~~G~~~~des~lv--~G~~~d~g~~sp~~~~~~~---~~kv~l~n~~Ili~d~ki~s 248 (462)
++++..++.++.+.++.+.+.++ .+++ .|..++.+|++|||+.+.+ .++..++||+|++++..++.
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~~~-i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~ 237 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNLDA-IQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDT 237 (519)
T ss_pred HHHHHHHHHHHHHHhccCCChhh-eEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCC
Confidence 44555555566556666556654 7777 5999999999999986665 66778999999999998864
No 61
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=34.57 E-value=1.9e+02 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCe
Q psy2267 254 PALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGI 318 (462)
Q Consensus 254 ~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~ 318 (462)
+.++.+.+....+|++++|+++....-|..---+.++.++-| | -+++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~--------s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--K--------SKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--C--------CHHHHHHHhCCC
Confidence 345556556688999999999998776542222335566654 2 355667777654
No 62
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.86 E-value=67 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCCeEE
Q psy2267 404 DRRADQIRDQIEATTSDYEREKLQERLARLASGVAV 439 (462)
Q Consensus 404 ~~r~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~~a~ 439 (462)
..|+.++..++++-.+..|-.+|+-+++++.|.+..
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999997654
No 63
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=26.11 E-value=1.4e+02 Score=21.71 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcC
Q psy2267 398 GKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLAS 435 (462)
Q Consensus 398 g~~e~i~~r~~~~~~~~~~~~~~~~~~~l~~r~~~l~~ 435 (462)
++++.-..=++++...|....++.+|+-+.+++|+..|
T Consensus 16 ~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~ 53 (59)
T PF10410_consen 16 DTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLG 53 (59)
T ss_dssp TSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 56676677777888888888999999999999999887
No 64
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=22.94 E-value=1.5e+02 Score=26.43 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCCe
Q psy2267 399 KKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGV 437 (462)
Q Consensus 399 ~~e~i~~r~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~~ 437 (462)
+.+...+.++..+++++.+.++..|++++.|+++|+..-
T Consensus 90 D~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (133)
T PRK14736 90 TPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEAK 128 (133)
T ss_pred CHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888899999999999999987643
No 65
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=22.68 E-value=1.8e+02 Score=26.88 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=40.6
Q ss_pred HHHhhhcCeEee-------eehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcC
Q psy2267 373 TKNLITHYFIDI-------ELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLAS 435 (462)
Q Consensus 373 vk~~i~d~~vv~-------~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~~~~~~l~~r~~~l~~ 435 (462)
-+...+||+|.+ +++--+|+ -=.+.-..-+.+|+.+|..+..+.+++.|+..|.++..
T Consensus 29 ~k~~~rDPRFd~~~G~~~~~~f~k~Y~-----FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~ 93 (168)
T PF06102_consen 29 KKKKRRDPRFDSLSGEFNEDLFRKNYG-----FLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMES 93 (168)
T ss_pred cCCCCCCCCcCccccccCHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 455678999976 11211221 11345566788999999999999999999999988754
No 66
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=21.98 E-value=2.3e+02 Score=23.27 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=29.6
Q ss_pred CHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhcCC
Q psy2267 399 KKEDID-RRADQIRDQIEATTSDYEREKLQERLARLASG 436 (462)
Q Consensus 399 ~~e~i~-~r~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~ 436 (462)
..++.. .+++.+..+|...+ .||+.|+.||+-.+.|
T Consensus 12 s~~e~~~k~lE~L~~eL~~it--~ERnELr~~L~~~~~~ 48 (84)
T PF04822_consen 12 SKKEKKMKELERLKFELQKIT--KERNELRDILALYTEG 48 (84)
T ss_pred cHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC
Confidence 344555 78999999998876 8999999999988775
No 67
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=21.33 E-value=99 Score=25.23 Aligned_cols=35 Identities=37% Similarity=0.592 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEec
Q psy2267 27 FGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQ 61 (462)
Q Consensus 27 ~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~ 61 (462)
...+.+..+...+..++++++..|||.|.|..+.+
T Consensus 43 l~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 43 LPPEERAELMQLVQKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcccccceeeccccc
Confidence 34778899999999999999999999999977755
No 68
>PRK06683 hypothetical protein; Provisional
Probab=21.21 E-value=3.9e+02 Score=21.57 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeE
Q psy2267 255 ALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIV 319 (462)
Q Consensus 255 ~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~v 319 (462)
.++.+.+....+||+++|.++...+-+..---..++.+.-+ ...++|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~----------~t~~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV----------ESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE----------CCHHHHHHHhCCcc
Confidence 34555555688999999999987776531111123344332 24566788887643
No 69
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=20.79 E-value=2e+02 Score=23.23 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEec-CCchhHHHHHHhhhhccCceEEEEecCC-CCCCchhhHHHHHHHhCCeEec
Q psy2267 253 IPALELANSKRKPLVILAE-DVDGEALSTLVVNRLKIGLQVAAVKAPG-FGDNRKATLQDLAVATGGIVFG 321 (462)
Q Consensus 253 ~~~le~i~~~g~~lvIia~-~I~~~aL~~L~~Nk~~~~~~v~aVk~p~-~g~~rk~~LedIa~~TGa~vis 321 (462)
...|......-.|++.+.+ ++++..+..+- ..++.. .++=||... ..+.+++..+.|+..|||.++.
T Consensus 6 ~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~-~~l~~~-eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~ 74 (84)
T PF01985_consen 6 RKFLRKLAHHLKPVVQIGKNGLTDGVIEEID-DALEKH-ELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQ 74 (84)
T ss_dssp HHHHHHHHTTC--SEEE-TTSS-HHHHHHHH-HHHHHH-SEEEEEETT--HHHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHhcCCCCeEEECCCCCCHHHHHHHH-HHHHhC-CeeEEEEccCCHHHHHHHHHHHHHHhCCEEEE
No 70
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.01 E-value=4.3e+02 Score=21.43 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCe
Q psy2267 255 ALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGI 318 (462)
Q Consensus 255 ~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~ 318 (462)
.++.+.+....+||++.|.++....-+..---..++.+.- ....++|..++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~----------~~t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVY----------IDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEE----------eCCHHHHHHHHCCc
Confidence 3455555668899999999988777664111112334422 13456788888764
Done!