RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2267
(462 letters)
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 628 bits (1622), Expect = 0.0
Identities = 240/429 (55%), Positives = 316/429 (73%), Gaps = 42/429 (9%)
Query: 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELK 82
KD++FG E R +L+GV+ LADAV VT+GPKGRNV++E+S+GSPKITKDGVTVAK IEL+
Sbjct: 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60
Query: 83 DKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 142
D F+N+GA+LV++VA+ TN+ AGDGTTTATVLARAI KEG + ++ GANP++++RG+ A
Sbjct: 61 DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120
Query: 143 VETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTL 202
VE + LK+LSKPV T EEIAQVATISANGD+ +GELI++AM++VGK+GVITV++GKTL
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180
Query: 203 TDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSK 262
ELEV+EGM+FDRGY+SPYF+ + +VE ++ +LL++ KISSIQ ++P LEL
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240
Query: 263 RKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGD 322
+PL+I+AEDV+GEAL+TLVVN+L+ GL+V AVKAPGFGD RKA L+D+A+ TGG V +
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300
Query: 323 EASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFI 382
E +KLED+ DLG ++V+TKDDT I+
Sbjct: 301 ELG-LKLEDVTLEDLGRAKKVVVTKDDTTIIG---------------------------- 331
Query: 383 DIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKV 442
G G K I R QIR QIE TTSDY++EKLQERLA+L+ GVAV+KV
Sbjct: 332 -------------GAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKV 378
Query: 443 GGSSEVSLE 451
GG++EV L+
Sbjct: 379 GGATEVELK 387
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 565 bits (1458), Expect = 0.0
Identities = 228/429 (53%), Positives = 307/429 (71%), Gaps = 42/429 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AKD++FG + R +L+GV+ LADAV VT+GPKGRNV+LE+S+G+P ITKDGVTVAK IEL
Sbjct: 2 AKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+D F+N+GA+LV++VA+ TN+ AGDGTTTATVLA+AI +EG + ++ GANP++++RG+
Sbjct: 62 EDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDK 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AVE LK++SKPV EEIAQVATISANGD+ +G+LI++AM++VGKEGVITV++ K
Sbjct: 122 AVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKG 181
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
ELEV+EGM+FDRGY+SPYF+ + + E ++ +L+++ KIS+IQ ++P LE
Sbjct: 182 FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQ 241
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVN+L+ L+V AVKAPGFGD RKA L+D+A+ TGG V
Sbjct: 242 SGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVIS 301
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
+E +KLED DLG ++V+TKD+T I
Sbjct: 302 EELG-LKLEDATLEDLGQAKKVVVTKDNTTI----------------------------- 331
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
+D G G KE I R QI+ QIE TTSDY+REKLQERLA+LA GVAV+K
Sbjct: 332 VD------------GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIK 379
Query: 442 VGGSSEVSL 450
VG ++EV +
Sbjct: 380 VGAATEVEM 388
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 553 bits (1428), Expect = 0.0
Identities = 231/432 (53%), Positives = 309/432 (71%), Gaps = 41/432 (9%)
Query: 17 LRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVA 76
R K++RFG E R +L+G++ LADAVAVT+GPKGRNVI+EQ +GSPKITKDGVTVA
Sbjct: 9 RYRFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVA 68
Query: 77 KGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIR 136
K IE D+F+N+GA+L++ VA+ TN++AGDGTTTAT+LARAI +EG + ++ G NP++++
Sbjct: 69 KAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLK 128
Query: 137 RGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITV 196
RG+ LAV+ + LKE S+PV T E+I VATISANGD +G LI+DAM +VGK+G ITV
Sbjct: 129 RGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITV 188
Query: 197 KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPAL 256
+DGKTL DELEV+EGM FDRGYISPYF+ K KVE ++ L+L+++ KISSIQSI+P L
Sbjct: 189 EDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPIL 248
Query: 257 ELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATG 316
E A ++PL+I+AEDV+GEAL TL++N+L+ GL+V AVKAPGFGDNRK LQD+AV TG
Sbjct: 249 EHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTG 308
Query: 317 GIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNL 376
V ++ +KL+D + LGS ++ +TKD+T+IL
Sbjct: 309 ATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVIL----------------------- 345
Query: 377 ITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 436
G G K +I R + +R QIE TTS+Y++EKL+ERLA+L+ G
Sbjct: 346 ------------------TGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGG 387
Query: 437 VAVLKVGGSSEV 448
VAV+KVGG+SEV
Sbjct: 388 VAVIKVGGASEV 399
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 528 bits (1364), Expect = 0.0
Identities = 225/429 (52%), Positives = 307/429 (71%), Gaps = 42/429 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK ++F E R + +GV+ LADAV VT+GPKGRNV++++S+G+P ITKDGV++AK IEL
Sbjct: 2 AKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+D F+N+GA+LV++VA+ TN+ AGDGTTTATVLA+A+ +EG + ++ GANP++++RG+
Sbjct: 62 EDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDK 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AVE + LK L++PV+ EEIAQVATISANGD+ +GELI++AM++VGK+GVITV++ KT
Sbjct: 122 AVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKT 181
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L ELEV EGM+FDRGY+SPYF+ + + +D L+LL++ KISS+Q ++P LE
Sbjct: 182 LETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQ 241
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVN+L+ GL+VAAVKAPGFGD RKA L+D+A+ TGG V
Sbjct: 242 SGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVIS 301
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
++ +KLE++ DLG + ITKD+T I+
Sbjct: 302 EDLG-LKLEEVTLDDLGRAKRVTITKDNTTIVD--------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G G KE I+ R QIR QIE TTSDY+REKLQERLA+LA GVAV+K
Sbjct: 334 --------------GAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIK 379
Query: 442 VGGSSEVSL 450
VG ++EV L
Sbjct: 380 VGAATEVEL 388
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 504 bits (1299), Expect = e-176
Identities = 227/431 (52%), Positives = 306/431 (70%), Gaps = 42/431 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK ++F E R +L+GVD LADAV VT+GPKGRNV+LE+S+G+P ITKDGVTVAK IEL
Sbjct: 1 AKQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIEL 60
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA+LV++VA+ TN+ AGDGTTTATVLA+AI KEG + ++ GANPIE++RG+
Sbjct: 61 EDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEK 120
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AVE + LK+LSKPV +EIAQVATISAN D+ +G LI++AM++VGK+GVITV++ K+
Sbjct: 121 AVEAVVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKS 180
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L ELEV+EGM+FDRGYISPYF+ A+ +VE ++ +L+++ KIS+I+ ++P LE
Sbjct: 181 LETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQ 240
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVN+L+ L V AVKAPGFGD RKA L+D+A+ TGG V
Sbjct: 241 SGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVIS 300
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
+E +KLE++ DLG ++ + KD+T I+
Sbjct: 301 EELG-LKLEEVTLDDLGKAKKVTVDKDNTTIV---------------------------- 331
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
+G G K I R QI+ QIE TTSDY+REKLQERLA+LA GVAV+K
Sbjct: 332 -------------EGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIK 378
Query: 442 VGGSSEVSLEY 452
VG ++E ++
Sbjct: 379 VGAATETEMKE 389
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 478 bits (1233), Expect = e-166
Identities = 222/429 (51%), Positives = 312/429 (72%), Gaps = 42/429 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK++RF + R +L+GV+ILA+AV VT+GPKGRNV+LE+S+G+P+ITKDGVTVAK IEL
Sbjct: 3 AKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIEL 62
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA++V++VA+ TN+ AGDGTTTATVLA+AI +EG + ++ G NP++++RG+ L
Sbjct: 63 EDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDL 122
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AV + LK+++K VT+ +EIAQVATISANGD+++GE+I++AM +VGKEGVITV++ KT
Sbjct: 123 AVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKT 182
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L EL+V+EGM+FDRGY+SPYF+ + + E +D +LL E KIS++Q ++P LE
Sbjct: 183 LGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQ 242
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
+PL+I+AEDV+GEAL+TLVVN+L+ GL+ AVKAPGFGD RKA L+D+AV TGG V
Sbjct: 243 SGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVIS 302
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
++ +KLE++ LG ++ITK++T I+
Sbjct: 303 EDLG-IKLENVTLDMLGRAKRVLITKENTTII---------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G G K++I+ R QIR QIE TTSDY+REKLQERLA+LA GVAV++
Sbjct: 334 -------------DGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIR 380
Query: 442 VGGSSEVSL 450
VGG++EV +
Sbjct: 381 VGGATEVEV 389
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 457 bits (1177), Expect = e-157
Identities = 221/429 (51%), Positives = 304/429 (70%), Gaps = 42/429 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK+V+F E R ML+GV+ILADAV VT+GPKGRNV++++S+G+P IT DGVT+AK IEL
Sbjct: 3 AKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIEL 62
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA++V++VA+ TN+ AGDGTTTATVLA+AI +EG + ++ GANP++++RG+
Sbjct: 63 EDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDR 122
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AV + LK ++PVTT EIAQVATISANGD +G L+++AM++VG EGVITV++ KT
Sbjct: 123 AVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKT 182
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
ELEV+EGM+FDRGY+SPYF+ A + E +D +L+ E KIS++Q ++P LE
Sbjct: 183 AETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQ 242
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVN+L+ GL+VAAVKAPGFGD RKA L+D+A+ TGG V
Sbjct: 243 SGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVIS 302
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
++ +KLE++ LG ++V+ K++T I+
Sbjct: 303 EDLG-IKLENVTLEQLGRAKKVVVEKENTTII---------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G G K +I+ R QIR QIE TTSDY+REKLQERLA+LA GVAV++
Sbjct: 334 -------------DGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIR 380
Query: 442 VGGSSEVSL 450
VG S+EV +
Sbjct: 381 VGASTEVEV 389
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 456 bits (1175), Expect = e-157
Identities = 222/430 (51%), Positives = 311/430 (72%), Gaps = 42/430 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AKDV+F + R ML+GVDILA+AV VT+GPKGRNV++E+S+G+P+ITKDGVTVAK IEL
Sbjct: 3 AKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIEL 62
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA++V++VA+ TN+ AGDGTTTATVLA+AI +EG + ++ G NP++++RG+ +
Sbjct: 63 EDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDI 122
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AV + +++ +KPV + EIAQV TISANGD A+G++I+ AM++VG EGVITV++ K+
Sbjct: 123 AVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKS 182
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L E++++EGMKFDRGY+SPYF+ A+ VE DA +LL E K+S +Q+++P LE
Sbjct: 183 LETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQ 242
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVNRL+ GL+VAAVKAPGFGD RKA L+D+A+ TGG +
Sbjct: 243 SGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLIS 302
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
++ +KLE++ LG ++VI K++T I+
Sbjct: 303 EDLG-IKLENVTLKMLGRAKKVVIDKENTTIV---------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G GKK DI+ R QI+ QIE TTSDY+REKLQERLA+LA GVAV++
Sbjct: 334 -------------NGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIR 380
Query: 442 VGGSSEVSLE 451
VGG++EV ++
Sbjct: 381 VGGATEVEVK 390
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 417 bits (1072), Expect = e-142
Identities = 226/430 (52%), Positives = 310/430 (72%), Gaps = 42/430 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK+V+FG + R ML+GVDILA+AV VT+GPKGRNV+L++S+G+P+ITKDGVTVAK IEL
Sbjct: 3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIEL 62
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA++V++VA+ + + AGDGTTTATVLA+AI +EG + ++ G NP++++RG+ L
Sbjct: 63 EDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDL 122
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AVE + L + SK VT+ +EIAQV TISANGD +G+ ++DAMK+VG EGVITV++ K+
Sbjct: 123 AVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKS 182
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L EL+V+EGM+FDRGYISPYF+ A +VE DA +L++E K+SS+ ++P LE
Sbjct: 183 LETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQ 242
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPLVI+AEDV+GEAL+TLVVNRL+ GL+VAAVKAPGFGD RKA LQD+A+ TGG
Sbjct: 243 TGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAIS 302
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
++ +KLE++ LG +++I K++T I+
Sbjct: 303 EDLG-IKLENVTLQMLGRAKKVMIDKENTTIV---------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G GKK DI+ R QI+ QIE TTSDY+REKLQERLA+LA GVAV++
Sbjct: 334 -------------NGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIR 380
Query: 442 VGGSSEVSLE 451
VGG++EV ++
Sbjct: 381 VGGATEVEVK 390
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 385 bits (992), Expect = e-130
Identities = 184/427 (43%), Positives = 279/427 (65%), Gaps = 44/427 (10%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
+K + + R + +G+DILA+AV+VT+GPKGRNV+LE+ +GSP+I DGVT+AK IEL
Sbjct: 2 SKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+D +N G L++ A+ TN+ AGDGTTTATVLA AI K+G + ++ GANPI ++RG+
Sbjct: 62 EDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEK 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
A + + + + E ++PV + I QVA+ISA D+ VG +I+DA+++VG+EGVI++++GK+
Sbjct: 122 ATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKS 181
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSI-QSIIPALELAN 260
ELE+ EGM+F++G+ISPYF+ + +V ++ +LL++ KI+ + Q ++P LE
Sbjct: 182 TVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVT 241
Query: 261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVF 320
++PL+I+AEDV+ EAL+TLV+N+L+ + V AV+APGFGD RKA L+D+A+ TGG V
Sbjct: 242 KTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVI 301
Query: 321 GDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHY 380
++A + LE +Q LG I++TKD T I+
Sbjct: 302 TEDAG-LSLETIQLDLLGQARRIIVTKDSTTII--------------------------- 333
Query: 381 FIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVL 440
G +E + R +Q+R QIE S YE+EKLQERLA+L+ GVAV+
Sbjct: 334 ---------------ADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVI 378
Query: 441 KVGGSSE 447
KVG ++E
Sbjct: 379 KVGAATE 385
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 329 bits (846), Expect = e-107
Identities = 179/438 (40%), Positives = 273/438 (62%), Gaps = 47/438 (10%)
Query: 17 LRRAYAKDVRFGPEVRGL--MLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVT 74
+ AK++ F + + + GV+ LAD V VT+GPKGRNV+LE +GSPKI DGVT
Sbjct: 51 PKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVT 110
Query: 75 VAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIE 134
VAK +EL+D +NIGAKLV+ A TN+ AGDGTTT+ VLA+ + EG + ++ GANP++
Sbjct: 111 VAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQ 170
Query: 135 IRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVI 194
I RG+ + + LK++SK V E+A VA +SA + VG +I++AM +VG++GV+
Sbjct: 171 ITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVV 229
Query: 195 TVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIP 254
T+++GK+ + L V+EGM+FDRGYISPYF+ ++ VE+ + +LL + KI++ + +I
Sbjct: 230 TLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289
Query: 255 ALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVA 314
LE A PL+I+AED++ EAL+TLVVN+L+ L++AA+KAPGFG+ + L D+A+
Sbjct: 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAIL 349
Query: 315 TGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITK 374
TGG V +E + L+ + LG+ ++V+TKD T I+
Sbjct: 350 TGGTVIREEVG-LSLDKVGKEVLGTAAKVVLTKDTTTIV--------------------- 387
Query: 375 NLITHYFIDIELLLISFDSPQGKGKKED-IDRRADQIRDQIEATTSDYEREKLQERLARL 433
G G ++ +++R QI++ IEA DYE+EKL ER+A+L
Sbjct: 388 ---------------------GDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKL 426
Query: 434 ASGVAVLKVGGSSEVSLE 451
+ GVAV++VG +E L+
Sbjct: 427 SGGVAVIQVGAQTETELK 444
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 319 bits (819), Expect = e-104
Identities = 167/441 (37%), Positives = 233/441 (52%), Gaps = 78/441 (17%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
K+ +FG + R ++ LADAV T+GPKGRN +L S G IT DGVT+ K IEL
Sbjct: 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIEL 62
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
++ GAKL+ +VA ++EAGDGTTTA VLA A+ KE + I+ G +P I+RG L
Sbjct: 63 ----EHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRL 118
Query: 142 AVETIKTHLKELSKPVTTPE-----EIAQVATISANGDKAVGELISDAMKRVGK-----E 191
AVE LKE++KPV+ E I VA+ SAN D+ +GEL+ +A+++VGK +
Sbjct: 119 AVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLD 178
Query: 192 GVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQS 251
G+I VK+ ELEV+EGM FD+GY+SPYF+ ++ +LL + K+ +
Sbjct: 179 GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMP-----DKRLENPKILLLDKKLEIKKP 233
Query: 252 IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDL 311
+P LE+ S KPL+I+AED +GEAL+TLVVN L+ G V VKAPG D KA L+D+
Sbjct: 234 ELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI 292
Query: 312 AVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPC 371
A+ TG V ++ + LG + + KD T I
Sbjct: 293 AILTGRRVKKED------LGERLAKLGGAKIVSVLKDLTTI------------------- 327
Query: 372 ITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLA 431
+ A + E T DY+ EKLQER A
Sbjct: 328 -----------------------------VLGEGAAGLVE---ETKTGDYDMEKLQERKA 355
Query: 432 RLASGVAVLKVGGSSEVSLEY 452
+ A GVA + V G++EV L+
Sbjct: 356 K-AGGVATILVRGATEVELDE 375
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 288 bits (739), Expect = 1e-92
Identities = 126/360 (35%), Positives = 176/360 (48%), Gaps = 66/360 (18%)
Query: 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELK 82
K+ FG E R + LADAV T+GPKG + +L S G P IT DG T+ K IE+
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEV- 59
Query: 83 DKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 142
++ AKL+ +VA + ++E GDGTTT VLA + KE + ++ G +P EI RG A
Sbjct: 60 ---EHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKA 116
Query: 143 VETIKTHLKELSKP--VTTPEEIAQVATISAN------GDKAVGELISDAMKRVGKE--- 191
VE LKE++ P V EE+ +VAT S N GD +GEL+ DA+ +VGKE
Sbjct: 117 VEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGD 176
Query: 192 ---GVITVKDGKTLT-DELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKIS 247
GVI V+ K + ++ E++ GM FD+GY+SPY ++A +LL + K+
Sbjct: 177 VDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLE 229
Query: 248 SIQSIIPALELANSKRKPLVILAED-VDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKA 306
V++AE +D EAL L L + AV+ RK
Sbjct: 230 Y------------------VVIAEKGIDDEALHYLAK------LGIMAVRR-----VRKE 260
Query: 307 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK----DDTLILKVTSAPPCT 362
L+ +A ATG + LEDL DLG+ G + TK T I T
Sbjct: 261 DLERIAKATGATIVSR------LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVAT 314
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 221 bits (565), Expect = 7e-67
Identities = 110/350 (31%), Positives = 163/350 (46%), Gaps = 67/350 (19%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
LADAV T+GPKGRN +L G IT DG T+ K IE++ AKL+ + A + +
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVT-TP 160
EE GDGTTTA VLA + +E + I G +P +I RG LA+E L+ELS PV+
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 161 EEIAQVATISANGDKA------VGELISDAMK------RVGKEGVITVKDGKTLTDELEV 208
E++ VA S N + +G+L+ DA+ VG GVI ++ G ++ E+
Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGS--LEDSEL 174
Query: 209 IEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQS----------------- 251
IEG+ D+GY+SP ++ +LL + + ++
Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227
Query: 252 ----IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKAT 307
++P LE LVI+ + +D AL L N + +K
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGIL-----------ALRRVKKED 276
Query: 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVG---EIVITKDDTLILK 354
L+ LA ATG V L+DL+ +LGS G E I +D T ++
Sbjct: 277 LERLAKATGATVVSS------LDDLEPDELGSAGKVEEREIGEDKTTFIE 320
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 107 bits (269), Expect = 5e-27
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 55/201 (27%)
Query: 161 EEIAQVATISAN-----GDKAVGELISDAMKRVGKE------GVITVKDGKTLT-DELEV 208
E + QVAT S N D +G+L+ DA+ +VG + GVI V+ + ++ E+
Sbjct: 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSEL 61
Query: 209 IEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVI 268
+ G+ FD+GY SPY ++A +LL + + V+
Sbjct: 62 VVGVVFDKGYASPYM-------PKRLENAKILLLDCPLEY------------------VV 96
Query: 269 LAED-VDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPV 327
+AE +D AL L + AV+ +K L+ +A ATG +
Sbjct: 97 IAEKGIDDLALHYLAK------AGIMAVRR-----VKKEDLERIARATGATIVSS----- 140
Query: 328 KLEDLQATDLGSVGEIVITKD 348
LEDL DLG+ + TK
Sbjct: 141 -LEDLTPEDLGTAELVEETKI 160
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 80.8 bits (200), Expect = 2e-16
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 24/231 (10%)
Query: 41 ILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100
+A+AV T+GPKG + +L S G IT DG T+ K +++ ++ AK++ +VA
Sbjct: 26 AVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDI----EHPAAKMLVEVAKTQ 81
Query: 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP 160
+EE GDGTTTA VLA + ++ + + + +P I G LA E L E++ V
Sbjct: 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPD 141
Query: 161 EE-----IAQVATISANGDKA---VGELISDAMKRVGKEG-----------VITVKDGKT 201
++ IA+ + + A + +L+ DA+ +V ++ I K G +
Sbjct: 142 DKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGS 201
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSI 252
+ D+ E+I G+ D+ + P + AK+ DA + + +++I + I
Sbjct: 202 V-DDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRI 251
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 76.3 bits (188), Expect = 7e-15
Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 26/246 (10%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
G + + + +A+AV T+GP+G + +L S G IT DG T+ K +++ ++
Sbjct: 14 GRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDI----EH 69
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIK 147
AK++ +VA +EE GDGTTTA VLA + ++ + + + +P I G A E
Sbjct: 70 PAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKAL 129
Query: 148 THLKELSKPVT--TPEEIAQVATISANGDKAVGE--------LISDAMKRV------GK- 190
+ E++ ++ + + +VA S KA E L+ +A+K+V GK
Sbjct: 130 EIIDEIATKISPEDRDLLKKVAETSLTS-KASAEVAKDKLANLVVEAVKQVAELRGDGKY 188
Query: 191 ----EGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKI 246
+ + VK D+ E++EG+ D+ + P + AK+ DA + + +++I
Sbjct: 189 YVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEI 248
Query: 247 SSIQSI 252
+ I
Sbjct: 249 DAEIRI 254
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 66.5 bits (163), Expect = 8e-12
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 29/229 (12%)
Query: 30 EVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIG 89
+VR +Q +ADA+ ++GP+G + +++ G IT DG T+ K + + +
Sbjct: 8 DVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSV----LHPA 63
Query: 90 AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTH 149
AK++ +++ + EAGDGTT+ VLA A+ + KG +P I +A +
Sbjct: 64 AKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123
Query: 150 LKELSKPV--TTPEEIAQVATISANGDKAV-------GELISDAMKRVGKEGV------- 193
L +S PV E + + AT S N K V + DA+ +V
Sbjct: 124 LDSMSIPVDLNDRESLIKSATTSLN-SKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLK 182
Query: 194 ---ITVKDGKTLTDELEVIEGM----KFDRGYISPYFINTAKGAKVEFQ 235
I K G T+ D E+++G+ K + P I AK ++F
Sbjct: 183 DIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFC 230
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 63.7 bits (155), Expect = 8e-11
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 23 KDVRFGPEVRGLMLQGVDILA-DAVAVTM----GPKGRNVILEQSWGSPKITKDGVTVAK 77
KD ++GL + +I A +VA + GPKG + +L G +T DG T+
Sbjct: 15 KDQDNKKRLKGLEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATILS 74
Query: 78 GIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRR 137
+++ N AKL+ +++ + ++E GDGTT VLA A+ ++ E + KG +PI+I
Sbjct: 75 QMDV----DNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAE 130
Query: 138 GVMLAVETIKTHLKELSKPVTTPEEIAQV---ATISANGDKAVGELISDAMKRVGKEGVI 194
G A HL+E+S ++ + A ++ G K V + + + V+
Sbjct: 131 GFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVSK-CHRRFAEIAVDAVL 189
Query: 195 TVKD 198
V D
Sbjct: 190 NVAD 193
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 62.1 bits (151), Expect = 2e-10
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 25/227 (11%)
Query: 30 EVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIG 89
+VR + +ADA+ ++GPKG + +++ G IT DG T+ K + + +
Sbjct: 9 DVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAV----LHPA 64
Query: 90 AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTH 149
AK++ +++ + EAGDGTT+ +LA A+ ++KG +P I A +
Sbjct: 65 AKMLVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKI 124
Query: 150 LKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLT------ 203
L E+S PV + + + + + V S + + + V+ V D +
Sbjct: 125 LDEMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVDLND 184
Query: 204 -----------DELEVIEGM----KFDRGYISPYFINTAKGAKVEFQ 235
D+ E+IEG+ K + P I AK ++FQ
Sbjct: 185 IKVVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQ 231
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 61.7 bits (150), Expect = 4e-10
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+A+A+ T+GP+G + ++ S G ++ DG T+ K +++ AK + D+A + +
Sbjct: 30 IAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHP----AAKTLVDIAKSQD 85
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE 161
E GDGTT+ +LA + KE I +G +P I RG A+ +KE++ VT
Sbjct: 86 SEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIA--VTIDS 143
Query: 162 E 162
E
Sbjct: 144 E 144
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 61.6 bits (150), Expect = 4e-10
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 38 GVDILADAVAVTMGPKGRNVILEQSW--GSPKITKDGVTVAKGIELKDKFQNIGAKLVQD 95
G + D V T+GPKG + IL+ G +T DG T+ K I + N AK++ D
Sbjct: 21 GAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGV----DNPAAKVLVD 76
Query: 96 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVET 145
++ ++E GDGTT+ TVLA + +E + +++ +P I G +A
Sbjct: 77 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAA 126
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 60.8 bits (148), Expect = 7e-10
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 42 LADAVAVTMGPKGRNVILE-----QSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDV 96
+AD V T+GPKG + IL+ G+ +T DG T+ K + L N AK++ D+
Sbjct: 34 VADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWL----DNPAAKILVDI 89
Query: 97 ANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELS 154
+ +EE GDGTT+ VLA + +E + + + +P I G +A++ + L+E++
Sbjct: 90 SKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIA 147
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 60.0 bits (146), Expect = 1e-09
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 41 ILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100
+ADAV T+GP+G + ++ G I+ DG T+ K +++ AK + D+A +
Sbjct: 27 AIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHP----AAKTLVDIAKSQ 82
Query: 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP 160
+ E GDGTT+ VLA KE I G +P I RG A++ +KE++ V
Sbjct: 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIA--VNID 140
Query: 161 EE 162
+E
Sbjct: 141 KE 142
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 57.7 bits (140), Expect = 7e-09
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+A+ + ++GP+G + IL G +T DG T+ + +++ + AKL+ +++ + +
Sbjct: 35 VANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDV----DHQIAKLLVELSKSQD 90
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE 161
+E GDGTT VLA A+ ++ + + +G +PI I G A + HL+E++ +
Sbjct: 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP 150
Query: 162 E----IAQVATISANGDKAVGELISDAMKRVGKEGVITVKD 198
+ + Q A S G K V + + V++V D
Sbjct: 151 DNKEPLIQTAMTSL-GSKIVSRC-HRQFAEIAVDAVLSVAD 189
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 57.6 bits (139), Expect = 8e-09
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 42 LADAVAVTMGPKGRNVILEQ-SWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100
+ D V T+GPKG + IL+ S + +T DG T+ K I L N AK++ +++
Sbjct: 26 VGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGL----DNPAAKVLVNISKVQ 81
Query: 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELS 154
++E GDGTT+ TVLA + +E + I++ +P I G LA + L + +
Sbjct: 82 DDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALTKSA 135
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 54.0 bits (130), Expect = 9e-08
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 36 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQD 95
+Q +AD + T+GP+ +L G +T DG + + I++ + AK + +
Sbjct: 22 IQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDV----AHPAAKSMIE 77
Query: 96 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSK 155
++ +EE GDGTT+ +LA + + + +P I R A++ + L+E+S
Sbjct: 78 LSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISI 137
Query: 156 PVTTPEEIAQVATISAN-GDKAVGELISDAMKRVGKEGVITVK-DGKTLTDELEV 208
PV ++ A + I + G K V SD M + + V TVK D E+++
Sbjct: 138 PVDVNDDAAMLKLIQSCIGTKFVSRW-SDLMCDLALDAVRTVKRDLGNGRKEIDI 191
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 53.2 bits (128), Expect = 2e-07
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+A+ V ++GP G + +L G IT DG T+ K +E++ AK++ ++A +
Sbjct: 24 VANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQD 79
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA----VETIKTHLK 151
E GDGTT+ ++A + K E + +P I G LA V+ IK +L
Sbjct: 80 REVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYIKENLS 133
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 51.9 bits (125), Expect = 4e-07
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
G +VR + +A+ V ++GP G + +L G IT DG T+ K +E++
Sbjct: 6 GQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP--- 62
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAV-ETI 146
AK++ ++A ++E GDGTT+ ++A + K E + + +P I G LA E +
Sbjct: 63 -AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAV 121
Query: 147 KTHLKELSKPVTT--PEEIAQVA-------TISANGDKAVGELISDAMKRV 188
K + LS V E + VA I A+ D ++ DA+ V
Sbjct: 122 KYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSD-FFANMVVDAILAV 171
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 50.8 bits (122), Expect = 9e-07
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+AD + +GP+ +L G +T DG + + I++ + AK + +++ +
Sbjct: 28 VADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDV----AHPAAKSMIELSRTQD 83
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE 161
EE GDGTT+ +LA I + +G +P I + A+E L+E+S PV
Sbjct: 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPV-DVN 142
Query: 162 EIAQVATI--SANGDKAV---GELIS----DAMKRVGKE 191
+ AQ+ I S G K V +L+ DA+K V E
Sbjct: 143 DRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVE 181
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 48.8 bits (117), Expect = 4e-06
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L D + +GPKG +L G K+TKDG + ++ Q+ A ++ A +
Sbjct: 24 LQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQ----IQHPTASMIARAATAQD 79
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV 157
+ GDGTT+ +L + K+ I +G +P I G LA L+ PV
Sbjct: 80 DITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPV 135
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 48.2 bits (115), Expect = 7e-06
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L+ ++GP G N ++ +T D T+ + +E+ Q+ AKL+ +
Sbjct: 30 LSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEV----QHPAAKLLVMASEMQE 85
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSK-PVTTP 160
E GDGT VLA + + E I G +P EI +G +A++ L+EL +
Sbjct: 86 NEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDL 145
Query: 161 EEIAQV--ATISANGDKAVG------ELISDAM-----KRVGKEGVITVKDGKTLTDEL- 206
+ ++ A ++ K G +L++ A K V ++ K + L
Sbjct: 146 RDKKELIKALKASISSKQYGNEDFLSQLVAKACSTVLPKNPQNFNVDNIRVVKIMGGSLS 205
Query: 207 --EVIEGMKFDR 216
EVI+GM F+R
Sbjct: 206 NSEVIKGMVFNR 217
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 46.8 bits (112), Expect = 1e-05
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L+ + GP G N ++ +T D T+ + +E Q+ AKL+ +
Sbjct: 20 LSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELE----VQHPAAKLLVMASQMQE 75
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELS----KPV 157
EE GDGT VLA + ++ E + G +P EI G A++ L+EL + +
Sbjct: 76 EEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDL 135
Query: 158 TTPEEIAQV 166
EE+++
Sbjct: 136 RNKEEVSKA 144
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L D + +GPKG +L G K+TKDG + +++ Q+ A ++ A +
Sbjct: 28 LQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQI----QHPTASMIARAATAQD 83
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 142
E GDGTT+ +L + K+ I +G +P I G +A
Sbjct: 84 EITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIA 124
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 34.6 bits (80), Expect = 0.12
Identities = 67/298 (22%), Positives = 110/298 (36%), Gaps = 43/298 (14%)
Query: 15 PLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVT 74
PLL+ D+ G E+ L++ G + VT+ G ++ QS G P +G
Sbjct: 301 PLLKEDVPNDLELGEELDRLIITGPNT--GGKTVTLKTLGLLRLMAQS-GLPIPALEGSE 357
Query: 75 VAKGIELKDKFQNIGA--KLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANP 132
+ F I A Q + + + + T +L +A + F+++ G +P
Sbjct: 358 LP-------VFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKADSLVLFDELGSGTDP 410
Query: 133 IEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEG 192
E G LA+ ++ L++ +K V T EL + A +R G E
Sbjct: 411 DE---GAALAIAILEDLLEKPAKIVATTHY---------------RELKALAAEREGVEN 452
Query: 193 VITVKDGKTLTDELEVIEG-----MKFD---RGYISPYFINTAKGAKVEFQDALVLLSES 244
D +TL ++EG FD R + I AK E ++ L L E
Sbjct: 453 ASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELLEELIEK 512
Query: 245 KISSIQSIIPALELANSKRKPLVILAEDVDGEALSTL-----VVNRLKIGLQVAAVKA 297
+ + LE + +L G S L +V +GL V A +A
Sbjct: 513 LEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEA 570
>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin
family [Translation, ribosomal structure and
biogenesis].
Length = 204
Score = 32.3 bits (74), Expect = 0.36
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 383 DIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERL 430
+ L+ FD P K + ++ D R +E T SD R K +L
Sbjct: 149 KLYEELMEFDYP--KALVPGLRQKQDVARSLLEKTKSDLFRAKQNRQL 194
>gnl|CDD|221101 pfam11382, DUF3186, Protein of unknown function (DUF3186). This
bacterial family of proteins has no known function.
Length = 307
Score = 31.2 bits (71), Expect = 1.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 68 ITKDGVTVAKGIELKDKFQNI-GAKLVQDVANNTNEEAGDGTTTA 111
+T+ G TV I L D F + A ++ V NN + AGD +TA
Sbjct: 106 LTQAGATVVGRITLTDNFVDPESADKLKSVVNNDLKPAGDQLSTA 150
>gnl|CDD|182241 PRK10100, PRK10100, DNA-binding transcriptional regulator CsgD;
Provisional.
Length = 216
Score = 30.6 bits (69), Expect = 1.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 120 KEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSK 155
KE K+ GA+ EI R + ++ T+KTHL L K
Sbjct: 161 KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFK 196
>gnl|CDD|234323 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. This family of proteins contains a C-terminal
thiamine diphosphate (TPP) binding domain typical of
flavodoxin/ferredoxin oxidoreductases (pfam01855) as
well as an N-terminal domain similar to the gamma
subunit of the same group of oxidoreductases
(pfam01558). The genes represented by this model are
always found in association with a neighboring gene for
a beta subunit (TIGR02177) which also occurs in a
4-subunit (alpha/beta/gamma/ferredoxin) version of the
system. This alpha/gamma plus beta structure was used to
define the set of sequences to include in this model.
This pair of genes is not consistantly observed in
proximity to any electron acceptor genes, but is found
next to putative ferredoxins or ferredoxin-domain
proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum
USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM
15236, Rhodopseudomonas palustris BisB5, Os,
Sphingomonas wittichii RW1 and Streptomyces
clavuligerus. Other potential acceptors are also
sporadically observed in close proximity including
ferritin-like proteins, reberythrin, peroxiredoxin and a
variety of other flavin and iron-sulfur
cluster-containing proteins. The phylogenetic
distribution of this family encompasses archaea, a
number of deeply-branching bacterial clades and only a
small number of firmicutes and proteobacteria. The
enzyme from Sulfolobus has been characterized with
respect to its substrate specificity which is described
as wide, encompassing various 2-oxoacids such as
2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme
from Hydrogenobacter thermophilus has been shown to have
a high specificity towards 2-oxoglutarate and is one of
the key enzymes in the reverse TCA cycle in this
organism. Furthermore, considering its binding of
coenzyme A, it can be reasonably inferred that the
product of the reaction is succinyl-CoA. The genes for
this enzyme in Prevotella intermedia 17, Persephonella
marina EX-H1 and Picrophilus torridus DSM 9790 are in
close proximity to a variety of TCA cycle genes.
Persephonella marina and P. torridus are believed to
encode complete TCA cycles, and none of these contains
the lipoate-based 2-oxoglutarate dehydrogenase
(E1/E2/E3) system. That system is presumed to be
replaced by this one. In fact, the lipoate system is
absent in most organisms possessing a member of this
family, providing additional circumstantial evidence
that many of these enzymes are capable of acting as
2-oxoglutarate dehydrogenases and.
Length = 562
Score = 31.0 bits (71), Expect = 1.6
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 24/77 (31%)
Query: 103 EAGDG-TTTATVLARAIAKEGFE------------------KISKGANPIEIRRG---VM 140
AGDG T + A+A+A+ G+ +I P+ V+
Sbjct: 9 AAGDGIQTAGEIFAKALARAGYYVFTFRDYPSRIRGGHSYFQIRISDEPVRSPGDGVDVL 68
Query: 141 LAV--ETIKTHLKELSK 155
+A+ ET+K HL EL
Sbjct: 69 VALNPETLKEHLDELRP 85
>gnl|CDD|238410 cd00795, NOS_oxygenase_euk, Nitric oxide synthase (NOS) eukaryotic
oxygenase domain. NOS produces nitric oxide (NO) by
catalyzing a five-electron heme-based oxidation of a
guanidine nitrogen of L-arginine to L-citrulline via two
successive monooxygenation reactions producing
N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In
mammals, there are three distinct NOS isozymes: neuronal
(nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and
endothelial (eNOS or NOS-3) . Nitric oxide synthases are
homodimers. In eukaryotes, each monomer has an
N-terminal oxygenase domain, which binds to the
substrate L-Arg, zinc, and to the cofactors heme and
5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic
NOS's also have a C-terminal electron supplying
reductase region, which is homologous to cytochrome P450
reductase and binds NADH, FAD and FMN.
Length = 412
Score = 30.0 bits (68), Expect = 2.6
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 348 DDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRA 407
DTL K T PCT + C + +T P+ KE++ +A
Sbjct: 14 YDTLHSKATQDGPCTERRCL-GSIMDPKKLTR-------------RPRDGRPKEELLPQA 59
Query: 408 DQIRDQIEATTSDYEREKLQERLARL 433
+D I S +R + LARL
Sbjct: 60 ---KDFINQYYSSIKRSGSEAHLARL 82
>gnl|CDD|218753 pfam05794, Tcp11, T-complex protein 11. This family consists of
several eukaryotic T-complex protein 11 (Tcp11) related
sequences. Tcp11 is only expressed in fertile adult
mammalian testes and is thought to be important in sperm
function and fertility. The family also contains the
yeast Sok1 protein which is known to suppress cyclic
AMP-dependent protein kinase mutants.
Length = 431
Score = 29.9 bits (68), Expect = 2.7
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 392 DSPQGKGKKEDIDRRADQIRDQIEATTSDYER-----EKLQERLARLASG 436
DS +G+ K+ D +R+++ DY R E++++ L L G
Sbjct: 22 DSLEGRVKETMHKAYWDALREELSQDPPDYSRLIKLFEEIKDILLSLLLG 71
Score = 29.2 bits (66), Expect = 5.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 409 QIRDQIEATTSDYEREKLQERLAR 432
+R + + +YER+K QE L +
Sbjct: 163 SLRPLLIENSVEYERKKFQELLEK 186
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes.
This superfamily (also known as the C-N hydrolase
superfamily) contains hydrolases that break
carbon-nitrogen bonds; it includes nitrilases, cyanide
dihydratases, aliphatic amidases, N-terminal amidases,
beta-ureidopropionases, biotinidases, pantotheinase,
N-carbamyl-D-amino acid amidohydrolases, the glutaminase
domain of glutamine-dependent NAD+ synthetase,
apolipoprotein N-acyltransferases, and
N-carbamoylputrescine amidohydrolases, among others.
These enzymes depend on a Glu-Lys-Cys catalytic triad,
and work through a thiol acylenzyme intermediate.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer. These oligomers include dimers, tetramers,
hexamers, octamers, tetradecamers, octadecamers, as well
as variable length helical arrangements and
homo-oligomeric spirals. These proteins have roles in
vitamin and co-enzyme metabolism, in detoxifying small
molecules, in the synthesis of signaling molecules, and
in the post-translational modification of proteins. They
are used industrially, as biocatalysts in the fine
chemical and pharmaceutical industry, in cyanide
remediation, and in the treatment of toxic effluent.
This superfamily has been classified previously in the
literature, based on global and structure-based sequence
analysis, into thirteen different enzyme classes
(referred to as 1-13). This hierarchy includes those
thirteen classes and a few additional subfamilies. A
putative distant relative, the plasmid-borne TraB
family, has not been included in the hierarchy.
Length = 253
Score = 29.6 bits (67), Expect = 2.8
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 24 DVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSW 63
D+RF R L L+G DI+ + P R E
Sbjct: 145 DLRFPELARELALKGADII---LVPAAWPTARREHWELLL 181
>gnl|CDD|185008 PRK15048, PRK15048, methyl-accepting chemotaxis protein II;
Provisional.
Length = 553
Score = 30.0 bits (67), Expect = 2.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 162 EIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTD 204
E+ +A+ SA K + LI D++ RV V+ G+T+ +
Sbjct: 400 EVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNN 442
>gnl|CDD|219664 pfam07958, DUF1688, Protein of unknown function (DUF1688). A
family of uncharacterized proteins.
Length = 413
Score = 29.1 bits (66), Expect = 4.9
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 273 VDGEALSTLVVNRLKIGLQVAA----VKAPGFGDNRKATLQDL--AVATGGIVFGDEASP 326
VD L L V RL G QV+ V G R A L+ L A+A +FG + P
Sbjct: 152 VDAAGLKRLTVERLARGFQVSEANPLVGLEG----RVALLRRLGEALAANPEIFGPDGRP 207
Query: 327 VKLED--LQATDLGSV 340
L D A G +
Sbjct: 208 GNLVDYLTAAASGGII 223
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 29.3 bits (66), Expect = 5.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 67 KITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARA 117
K T + KG L D + KLV+ V ++ D T TA VL +A
Sbjct: 583 KSTVGVGSGGKGTSLTDAY----GKLVERVGTLASQARADATATAAVLKQA 629
>gnl|CDD|225309 COG2511, GatE, Archaeal Glu-tRNAGln amidotransferase subunit E
(contains GAD domain) [Translation, ribosomal structure
and biogenesis].
Length = 631
Score = 29.2 bits (66), Expect = 5.9
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 113 VLARAIAKEGFEKISKG--ANP-------IEIRRGVMLAVETIKTHLKELSKPVTTPEEI 163
V IAKE E+I K NP E L+ E ++ + E+ + +
Sbjct: 532 VSEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEIIE-----SNL 586
Query: 164 AQVATISANGDKAVGELISDAMKRV 188
+ G A+G L+ M ++
Sbjct: 587 DVIK---ERGMGAMGLLMGRVMAKL 608
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 27.5 bits (62), Expect = 8.3
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 397 KGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVG 443
K +K A ++ + A ++ E + + R A VA+L++
Sbjct: 80 KKEKARYRSEAKELEAK--AKEAEAESDHALHQHHRFALAVALLQIA 124
>gnl|CDD|218117 pfam04504, DUF573, Protein of unknown function, DUF573.
Length = 98
Score = 26.9 bits (60), Expect = 8.5
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 384 IELL--LISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARL 433
I LL +I F + GK +D D + ++ I D + +L +++ RL
Sbjct: 13 IVLLQGMIDFKAKTGKSPSDDTDAFYEFVKGSISF---DVSKSQLSDKIRRL 61
>gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit,
predominant form. Bacteria have a single DNA-directed
RNA polymerase, with required subunits that include
alpha, beta, and beta-prime. This model describes the
predominant architecture of the beta-prime subunit in
most bacteria. This model excludes from among the
bacterial mostly sequences from the cyanobacteria, where
RpoC is replaced by two tandem genes homologous to it
but also encoding an additional domain [Transcription,
DNA-dependent RNA polymerase].
Length = 1140
Score = 28.5 bits (64), Expect = 9.8
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 399 KKEDIDRRADQIRDQIEATTSDYEREKLQERL 430
+K D+D+ ++++ Q+ + SD +R+KL +RL
Sbjct: 172 EKIDLDKEIEELKIQLRESKSDQKRKKLLKRL 203
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.364
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,425,445
Number of extensions: 2357500
Number of successful extensions: 2330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2261
Number of HSP's successfully gapped: 92
Length of query: 462
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 362
Effective length of database: 6,502,202
Effective search space: 2353797124
Effective search space used: 2353797124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.2 bits)