RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2267
(462 letters)
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 553 bits (1427), Expect = 0.0
Identities = 214/429 (49%), Positives = 303/429 (70%), Gaps = 42/429 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK+V+F + R ML+GV+ILADAV VT+GPKGRNV++++S+G+P+ITKDGV+VAK IEL
Sbjct: 3 AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
DKF+N+GA++V++VA+ TN+EAGDGTTTATVLA+AI +EG + ++ G NP++++RG+ +
Sbjct: 63 SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
A + +K ++PV E+AQV TISANG+ +G+ I++AM+RVG EGVITV++ K
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
+ E+EV+EGM+FDRGY+SPYF+ A E +DA +LL E K+SS+Q ++P LE
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
+KPL+I+AEDV+GEAL+TLVVN+L+ GL++AAVKAPGFGD RKA LQD+A+ TGG V
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
++ +KLE++ LG ++ I KD+T I+
Sbjct: 303 EDLG-MKLENVTIDMLGRAKKVSINKDNTTIV---------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G G+K +I+ R QIR QIE TTSDY+REKLQER+A+LA GVAV++
Sbjct: 334 -------------DGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIR 380
Query: 442 VGGSSEVSL 450
VGG +E+ +
Sbjct: 381 VGGMTEIEV 389
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 552 bits (1424), Expect = 0.0
Identities = 218/429 (50%), Positives = 293/429 (68%), Gaps = 42/429 (9%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AKDV+FG + ML+GV++LADAV VT+GPKGRNV+L++S+G+P ITKDGV+VA+ IEL
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA++V++VA+ N+ AGDGTTTATVLA+AI EG + ++ G NP++++RG+
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AV LK LS P + + IAQV TISAN D+ VG+LI++AM +VGKEGVITV+DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L DEL+V+EGM+FDRGY+SPYFIN + VE + +LL++ KIS+I+ ++P LE
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
+E ++LE DLG +VI KD T I+
Sbjct: 302 EEIG-MELEKATLEDLGQAKRVVINKDTTTII---------------------------- 332
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
G G++ I R QIR QIE TSDY+REKLQER+A+LA GVAV+K
Sbjct: 333 -------------DGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIK 379
Query: 442 VGGSSEVSL 450
VG ++EV +
Sbjct: 380 VGAATEVEM 388
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 545 bits (1408), Expect = 0.0
Identities = 205/429 (47%), Positives = 287/429 (66%), Gaps = 43/429 (10%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK + F R + +GV+ +A+AV VT+GP+GRNV+LE+ +GSP ITKDGVTVAK +EL
Sbjct: 2 AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+D +NIGA+L+++VA+ TN+ AGDGTTTATVLA+AI +EG + ++ GANP+ ++RG+
Sbjct: 62 EDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AVE +K L+ PV + I +VATISAN D VG+LI+DAM++VGKEG+ITV++ K+
Sbjct: 122 AVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKS 180
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
L EL+ +EG +FD+GYISPYF+ + + +DA +L+ E K+S+++ ++P LE
Sbjct: 181 LETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQ 240
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK L+D+A TGG V
Sbjct: 241 TGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVIS 300
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
+E KLE+ + LG + ITKD+T I+
Sbjct: 301 EELG-FKLENATLSMLGRAERVRITKDETTIV---------------------------- 331
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
GKGKKEDI+ R + I+ ++E T S+Y REKLQERLA+LA GVAV++
Sbjct: 332 -------------GGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIR 378
Query: 442 VGGSSEVSL 450
VG ++E L
Sbjct: 379 VGAATETEL 387
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 545 bits (1406), Expect = 0.0
Identities = 196/429 (45%), Positives = 280/429 (65%), Gaps = 43/429 (10%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK + + E R + +G++ LADAV VT+GPKGRNV+LE+ WG+P IT DGV++AK IEL
Sbjct: 2 AKTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+D ++ IGA+LV++VA T++ AGDGTTTATVLA+A+ +EG ++ GANP+ ++RG+
Sbjct: 62 EDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEK 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
AVE + L + +K V T E+IA A ISA D+++G+LI++AM +VG EGVITV++ T
Sbjct: 122 AVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNT 180
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
+LE+ EGM+FD+GYIS YF+ + + +D +LL SK+S+++ ++P LE
Sbjct: 181 FGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIG 240
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
KPL+I+AEDV+GEALSTLVVN+++ + AVKAPGFGD RKA LQD+A+ TGG V
Sbjct: 241 AGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVIS 300
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
+E + LE+ + LG ++V+TKD+T I
Sbjct: 301 EEVG-LTLENADLSLLGKARKVVVTKDETTI----------------------------- 330
Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
++ G G + I R QIR +IE + SDY+REKLQERLA+LA GVAV+K
Sbjct: 331 VE------------GAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIK 378
Query: 442 VGGSSEVSL 450
G ++EV L
Sbjct: 379 AGAATEVEL 387
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A
{Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A
1fya_A 1jon_A 1dk7_A 1dkd_A
Length = 201
Score = 251 bits (643), Expect = 4e-82
Identities = 101/239 (42%), Positives = 134/239 (56%), Gaps = 42/239 (17%)
Query: 201 TLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN 260
+ EGM+FDRGY+SPYFIN + VE ++ +LL + KIS+I+ ++P LE
Sbjct: 4 SHHHHHHGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVA 63
Query: 261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVF 320
KPLVI+AEDV+GEAL+TLVVN ++ ++VA+VKAPGFGD RKA LQD+A T G V
Sbjct: 64 KASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVI 123
Query: 321 GDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHY 380
+E ++LE DLG +VI KD T I+
Sbjct: 124 SEEIG-LELEKATLEDLGQAKRVVINKDTTTII--------------------------- 155
Query: 381 FIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAV 439
G G++ I R QIR QIE +TSDY+REKLQER+A+LA GV +
Sbjct: 156 --------------DGVGEEGAIAARVTQIRQQIEESTSDYDREKLQERVAKLAGGVKL 200
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding;
2.20A {Mycobacterium tuberculosis}
Length = 194
Score = 247 bits (632), Expect = 1e-80
Identities = 94/236 (39%), Positives = 132/236 (55%), Gaps = 42/236 (17%)
Query: 205 ELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRK 264
ELE EG+ FD+G++S YF+ + +DAL+LL + KISS+ ++P LE K
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 265 PLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEA 324
PL+I+AEDV+GEAL+TLVVN ++ L+ AVK P FGD RKA L+DLAV TGG V +A
Sbjct: 61 PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 325 SPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDI 384
+ L ++ LGS +V++KDDT+I+
Sbjct: 121 G-MVLREVGLEVLGSARRVVVSKDDTVIV------------------------------- 148
Query: 385 ELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVL 440
G G E + RA +R +I+ + SD++REKL ERLA+LA GVAV+
Sbjct: 149 ----------DGGGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI 194
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division,
ATP-binding, phosphorylation; 1.70A {Thermus
thermophilus} SCOP: c.8.5.1
Length = 145
Score = 180 bits (458), Expect = 2e-55
Identities = 70/142 (49%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
Query: 211 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 270
G +FD+GYISPYF+ + + +DA +L+ E K+S+++ ++P LE KPL+I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 271 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 330
EDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK L+D+A TGG V +E KLE
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELG-FKLE 119
Query: 331 DLQATDLGSVGEIVITKDDTLI 352
+ + LG + ITKD+T I
Sbjct: 120 NATLSMLGRAERVRITKDETTI 141
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 89.5 bits (223), Expect = 3e-19
Identities = 78/367 (21%), Positives = 134/367 (36%), Gaps = 69/367 (18%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L D + +GPKG +L G K+TKDG + +++ Q+ A L+ VA +
Sbjct: 22 LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQI----QHPTASLIAKVATAQD 77
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPV-TTP 160
+ GDGTT+ ++ + K+ IS+G +P I G A E L+++
Sbjct: 78 DITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDR 137
Query: 161 EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV--------ITVKDGKTLTDE 205
E + VA S K E + D++ + K+ I K+ TD
Sbjct: 138 ETLIDVARTSLRT-KVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDT 196
Query: 206 LEVIEGMKFDRGYISPYF---INTAK---------------GAKVEFQDA----LVLLSE 243
+I G+ D G P + A + ++ A ++ +E
Sbjct: 197 -SLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAE 255
Query: 244 SKI--SSIQSIIP--ALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPG 299
K ++ II +S + +VI + +D +L L A
Sbjct: 256 RKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDAL-----------AKEGIIA 304
Query: 300 FGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS---VGEIVITKDD-TLILKV 355
++ ++ L +A GGI L+DL L V E + ++ T I K
Sbjct: 305 LRRAKRRNMERLTLACGGIALNS------LDDLNPDCLLGHAGVYEYTLGEEKFTFIEKC 358
Query: 356 TSAPPCT 362
+ T
Sbjct: 359 NNPRSVT 365
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 88.0 bits (219), Expect = 8e-19
Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 58/348 (16%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+ADAV T+GPKG + +L S G I+ DG T+ K +++ ++ AK++ +V+ +
Sbjct: 34 IADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDV----EHPTAKMIVEVSKAQD 89
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPE 161
GDGTTTA VL+ + K+ + +G +P I G LAV + + E+++ T
Sbjct: 90 TAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDA 149
Query: 162 EIAQVATISANGDKAVG-------ELISDAMKRV----GKEGVITVKD-------GKTLT 203
+ ++A + +G K G +L+ A+ V + ++ + G ++
Sbjct: 150 TLRKIALTALSG-KNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVN 208
Query: 204 DELEVIEGMKFDRGYIS---PYFINTAKGA---------KVEFQDALVLLSESKISSIQS 251
D + I G+ D+ + P + AK A K E + + + SKI +
Sbjct: 209 DT-QFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLN 267
Query: 252 IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG---LQ-VAAVKAPGFGDNRKAT 307
E K+ I + +V+ + I +A +K+
Sbjct: 268 Q----ETNTFKQMVEKIKKSGAN------VVLCQKGIDDVAQHYLAKEGIYAVRRVKKSD 317
Query: 308 LQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 353
++ LA ATG + D L+DL + LG + K DD +
Sbjct: 318 MEKLAKATGAKIVTD------LDDLTPSVLGEAETVEERKIGDDRMTF 359
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 88.0 bits (219), Expect = 8e-19
Identities = 60/356 (16%), Positives = 132/356 (37%), Gaps = 71/356 (19%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+ +A+ T+GP G ++++ S I+ DG T+ K +++ + AK + D++ +
Sbjct: 36 VQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDV----VHPAAKTLVDISRAQD 91
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP- 160
E GDGTT+ T+LA + KE + +G + I +G AV + EL+ +T+
Sbjct: 92 AEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEK 151
Query: 161 ----EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV----ITV--KDGKTLT 203
E + + A + + K + ++ DA+ + + + I + G +
Sbjct: 152 SSGRELLERCARTAMSS-KLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAME 210
Query: 204 DELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL-------------SESKISSIQ 250
+ I G+ F + + F K +F + +L +E ++ ++
Sbjct: 211 ES-LFINGVAFKKTFSYAGFEQQPK----KFNNPKILSLNVELELKAEKDNAEVRVEHVE 265
Query: 251 SIIPALELANSKRKPLV--ILAEDVDGEALSTLVVNRLKIG---------LQVAAVKAPG 299
++ + + + +V+++L IG +
Sbjct: 266 DYQAIVDAEWQLIFEKLRQVEETGAN------IVLSKLPIGDLATQFFADRNIFCAGRVS 319
Query: 300 FGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 353
D + + A GG + D++ LG+ + + L
Sbjct: 320 ADDMNR-----VIQAVGGSIQST------TSDIKPEHLGTCALFEEMQIGSERYNL 364
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 86.1 bits (214), Expect = 3e-18
Identities = 81/388 (20%), Positives = 155/388 (39%), Gaps = 70/388 (18%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
EVR + +ADA+ ++GPKG + +++ S G I+ DG T+ K + + +
Sbjct: 17 PQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAI----LH 72
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIK 147
A+++ +V+ + EAGDGTT+ +L A+ ++KG +P I A +
Sbjct: 73 PVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSV 132
Query: 148 THLKELSKPVTT--PEEIAQVATISANGDKAVG-------ELISDAMKRVGKEGVITV-- 196
L E+ V+ E++ + A+ S + K V L D++ ++ E V
Sbjct: 133 DILLEMCHKVSLSDREQLVRAASTSLSS-KIVSQYSSFLAPLAVDSVLKISDENSKNVDL 191
Query: 197 -------KDGKTLTDELEVIEGMKFDRGYIS----PYFINTAKGA---------KVEFQD 236
K G T+ D E+I+G+ + I P AK K + ++
Sbjct: 192 NDIRLVKKVGGTIDDT-EMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTEN 250
Query: 237 ALVLLSESKISSI----QSIIPAL--ELANSKRKPLV----ILAEDVDGEALSTLVVNRL 286
+++ ++ I ++ + + ++ +K L+ IL + V+ AL L
Sbjct: 251 NIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLS---- 306
Query: 287 KIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIV-I 345
K+ + VK + L+ G D +E L S + I
Sbjct: 307 KLN--IMVVKDIEREEIEF-----LSKGLGCKPIAD------IELFTEDRLDSADLVEEI 353
Query: 346 TKDDTLILKVTSAPPCTCKSCEKAPCIT 373
D + I++VT ++ P ++
Sbjct: 354 DSDGSKIVRVTG-----IRNNNARPTVS 376
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 85.3 bits (212), Expect = 5e-18
Identities = 83/361 (22%), Positives = 149/361 (41%), Gaps = 57/361 (15%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
G + + + + I+A+ V T+GPKG + +L G +T DGVT+ + + + ++
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSV----EH 72
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIK 147
AK++ +VA +E GDGTTTA V+A + ++ E + + +P + +G A + +
Sbjct: 73 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQ 132
Query: 148 THLKELSKPVTT--PEEIAQVATISANGDKAVG-------ELISDAMKRVG-KEGVITVK 197
LK ++ V E + ++A S G K E+I +A+ V EG +
Sbjct: 133 ELLKTIACEVGAQDKEILTKIAMTSITG-KGAEKAKEKLAEIIVEAVSAVVDDEGKVDKD 191
Query: 198 D-------GKTLTDELEVIEGMKFDRGYIS---PYFINTAKGA---------KVEFQDAL 238
G ++ D E+I+G+ D+ +S P + AK A + E +
Sbjct: 192 LIKIEKKSGASIDDT-ELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEI 250
Query: 239 VLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG---LQ-VAA 294
+ +K+ E K I A + ++ + I +A
Sbjct: 251 RITDPAKLMEFIEQ----EEKMLKDMVAEIKASGAN------VLFCQKGIDDLAQHYLAK 300
Query: 295 VKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLI 352
+K+ ++ LA ATG V + L A DLG G + K D++I
Sbjct: 301 EGIVAARRVKKSDMEKLAKATGANVIAA------IAALSAQDLGDAGLVEERKISGDSMI 354
Query: 353 L 353
Sbjct: 355 F 355
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 85.3 bits (212), Expect = 7e-18
Identities = 71/350 (20%), Positives = 145/350 (41%), Gaps = 60/350 (17%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
++++V ++GP+G + +L S G IT DGVT+ K +++ ++ AK++ +V+ +
Sbjct: 33 ISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDV----EHPAAKMMVEVSKTQD 88
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-- 159
GDGTTTA ++A + ++ I++ +P I G +A E K + E+S +
Sbjct: 89 SFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE 148
Query: 160 PEEIAQVATISANGDKAVG-------ELISDAMKRV----GKEGVITVKD-------GKT 201
+ ++A S N K+ E+ +A+K V + + + G
Sbjct: 149 KALLLKMAQTSLNS-KSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGA 207
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKV------------EFQDALVLLSESKISSI 249
+ D ++I G+ D+ + P + K AK+ EF L + S I
Sbjct: 208 IDDT-QLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKF 266
Query: 250 QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG---LQ-VAAVKAPGFGDNRK 305
+ E + I + + +V+ + I ++ +K
Sbjct: 267 LAQ----EENMLREMVDKIKSVGAN------VVITQKGIDDMAQHYLSRAGIYAVRRVKK 316
Query: 306 ATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 353
+ + LA ATG + ++++ ++DLG+ + K +D +
Sbjct: 317 SDMDKLAKATGASIVST------IDEISSSDLGTAERVEQVKVGEDYMTF 360
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 85.3 bits (212), Expect = 7e-18
Identities = 75/350 (21%), Positives = 146/350 (41%), Gaps = 60/350 (17%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+ +A+ T GP+G + +L S G IT DG T+ ++L Q+ AKL+ +A +
Sbjct: 42 VEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDL----QHPAAKLLVQIAKGQD 97
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-- 159
EE DGT TA + + + K+ + + K +P I G A E ++EL++ V+
Sbjct: 98 EETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND 157
Query: 160 PEEIAQVATISANGDKAVG-------ELISDAMKRV----GKEGVITVKD-------GKT 201
+ + ++A S + KAV +++ A+ +V G + + + + G +
Sbjct: 158 TDLLRKIAMTSLSS-KAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGS 216
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKV------------EFQDALVLLSESKISSI 249
+ D +++ G+ D+ + P + AK+ E + + +++
Sbjct: 217 INDT-QLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKF 275
Query: 250 QSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG---LQ-VAAVKAPGFGDNRK 305
E K K ILA + +++ + I +A +K
Sbjct: 276 LDE----EENLIKEKVDKILATGAN------VIICQKGIDEVAQSYLAKKGVLAVRRAKK 325
Query: 306 ATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 353
+ L+ LA ATGG V + ++++ DLG I K +D ++
Sbjct: 326 SDLEKLARATGGRVVSN------IDEISEQDLGYASLIEERKVGEDKMVF 369
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 84.5 bits (210), Expect = 1e-17
Identities = 68/353 (19%), Positives = 116/353 (32%), Gaps = 70/353 (19%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L + +GPKG +L G+ K+TKDG + +++ Q+ A L+ A +
Sbjct: 29 LQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQI----QSPTAVLIARAAAAQD 84
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP- 160
E GDGTTT L + ++ I +G +P I G +A + L E T
Sbjct: 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLS 144
Query: 161 ---EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGVITV---------KDGKT 201
E + QVA S K +++DA+ V + +
Sbjct: 145 NDREFLLQVARSSLLT-KVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLS 203
Query: 202 LTDELEVIEGMKFDRGYIS---PYFINTAK---------------GAKVEFQDA----LV 239
D I+G+ D G P + A + + A +
Sbjct: 204 PKDT-TFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKL 262
Query: 240 LLSESKI-----SSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAA 294
SE K I + + + + ++I + +D +L A
Sbjct: 263 AASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVF-----------AK 311
Query: 295 VKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK 347
++ ++ L + TGG +EDL LG G +
Sbjct: 312 HNILALRRAKRRNMERLQLVTGGEAQNS------VEDLSPQILGFSGLVYQET 358
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 84.1 bits (209), Expect = 1e-17
Identities = 61/357 (17%), Positives = 136/357 (38%), Gaps = 73/357 (20%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+A+AV T+GP+G + ++ G I+ DG T+ K +++ + AK + D+A + +
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDV----VHPAAKTLVDIAKSQD 78
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP- 160
E GDGTT+ T+LA K+ + +G +P I R A + +KE++ V
Sbjct: 79 AEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKED 138
Query: 161 -----EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV------ITVKDGKTL 202
+ + + A + + K + +++ DA+ + + + I G L
Sbjct: 139 KVEQRKLLEKCAMTALSS-KLISQQKAFFAKMVVDAVMML-DDLLQLKMIGIKKVQGGAL 196
Query: 203 TDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL-------------SESKISSI 249
+ +++ G+ F + + F K ++ + ++ L +E ++ ++
Sbjct: 197 EES-QLVAGVAFKKTFSYAGFEMQPK----KYHNPMIALLNVELELKAEKDNAEIRVHTV 251
Query: 250 QSIIPALELANSKRKPLV--ILAEDVDGEALSTLVVNRLKIG---------LQVAAVKAP 298
+ ++ + + I +V+++L IG +
Sbjct: 252 EDYQAIVDAEWNILYDKLEKIHHSGAK------VVLSKLPIGDVATQYFADRDMFCAGRV 305
Query: 299 GFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 353
D ++ +A GG + + L + LG T+ +
Sbjct: 306 PEEDLKR-----TMMACGGSIQTS------VNALSSDVLGRCQVFEETQIGGERYNF 351
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 84.1 bits (209), Expect = 1e-17
Identities = 66/341 (19%), Positives = 124/341 (36%), Gaps = 61/341 (17%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+AD + +GPK +L G +T DG + + I++ Q+ AK + +++ +
Sbjct: 21 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQV----QHPAAKSMIEISRTQD 76
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-- 159
EE GDGTT+ +LA + + + +P + A++ + + LK++S PV T
Sbjct: 77 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN 136
Query: 160 PEEIAQVATISANGDKAVG-------ELISDAMKRVGKEG----------VITVK--DGK 200
+ + + S K + + DA+K V E V+ G
Sbjct: 137 RDTMLNIINSSITT-KVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGG 195
Query: 201 TLTDELEVIEGMKFDRGYISPYFINTAKGAKV------------EFQDALVLLSESKISS 248
+ D V+ G+ ++ P K ++ E Q + + E +
Sbjct: 196 IIEDS-CVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTR 254
Query: 249 I----QSIIPALELANSKRKPLVILAE-DVDGEALSTLVVNRLKIGLQVAAVKAPGFGDN 303
I + I L + KP V++ E + A L
Sbjct: 255 ILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYL-----------MRANITAIRRV 303
Query: 304 RKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIV 344
RK +A A G + E+L+ D+G+ ++
Sbjct: 304 RKTDNNRIARACGARIVSR------PEELREEDVGTGAGLL 338
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 83.8 bits (208), Expect = 2e-17
Identities = 74/355 (20%), Positives = 122/355 (34%), Gaps = 79/355 (22%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
L +MGP GRN I+ G IT D T+ + +++ + K++
Sbjct: 38 LHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDI----VHPAVKVLVMATEQQK 93
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT-- 159
+ GDGT +LA + + IS G + +EI +G +A + L E+ T
Sbjct: 94 IDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDK 153
Query: 160 --PEEIAQVATISANGDKAVG------ELISDAMKRV-------GKEGVITVKD------ 198
E+ ++ + K G EL+S+A+ V G+ V
Sbjct: 154 NDKNELLKMIKPVISS-KKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKI 212
Query: 199 -GKTLTDELEVIEGMKFDRGYIS----PYFINTAK---------------GAKVEFQDA- 237
G +L++ VI+GM F+R K V +A
Sbjct: 213 MGGSLSNS-TVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQ 271
Query: 238 ---LVLLSESKISSIQSIIPALELANSKRKPLVILAED-VDGEALSTLVVNRLKIGLQVA 293
E K I +++ + I+A V AL L NR I
Sbjct: 272 EMLDFSKGEEKQ--IDAMMKEIA----DMGVECIVAGAGVGELALHYL--NRYGI----L 319
Query: 294 AVKAPGFGDNRKATLQDLAVATGGIVFGDEASPV-KLEDLQATDLGSVGEIVITK 347
+K P + R+ L G A+P+ +L +LG V + +
Sbjct: 320 VLKVPSKFELRR-----LCRVCG-------ATPLPRLGAPTPEELGLVETVKTME 362
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 83.4 bits (207), Expect = 3e-17
Identities = 74/383 (19%), Positives = 143/383 (37%), Gaps = 64/383 (16%)
Query: 16 LLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTV 75
+++ K + G E + + +A + ++GP+G + IL G IT DG T+
Sbjct: 31 IVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATI 90
Query: 76 AKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEI 135
+EL N AKL+ ++ + ++E GDGTT VLA A+ + E I KG +PI+I
Sbjct: 91 LSQMEL----DNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKI 146
Query: 136 RRGVMLAVETIKTHLKELSKPVTTP------EEIAQVATISANGDKAVG-------ELIS 182
G A + + L+E ++ + + + A S K V E+
Sbjct: 147 ANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGS-KIVSKDHDRFAEMAV 205
Query: 183 DAMKRVGKEGVITV---------KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVE 233
+A+ V + V + G +++D ++I G+ D+ + P +
Sbjct: 206 EAVINVMDKDRKDVDFDLIKMQGRVGGSISDS-KLINGVILDKDFSHPQMPKCVLPKE-G 263
Query: 234 FQDALVLL-------------SESKISSIQSIIPALELANSKRKPLV--ILAEDVDGEAL 278
+ + + ISS++ K K ++ + D
Sbjct: 264 SDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGAD---- 319
Query: 279 STLVVNRLKIG---LQ-VAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQA 334
+V+ + + P L+ +A++T G + +DL
Sbjct: 320 --VVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPR------FQDLSK 371
Query: 335 TDLGSVGEIVITK----DDTLIL 353
LG+ I + D +++
Sbjct: 372 DKLGTCSRIYEQEFGTTKDRMLI 394
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 83.0 bits (206), Expect = 4e-17
Identities = 83/368 (22%), Positives = 150/368 (40%), Gaps = 68/368 (18%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
G + + L + I+A+ V T+GPKG + +L S G +T D T+ I+L Q+
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL----QH 76
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIK 147
AK++ +VA ++EAGDGTTTA V+A + ++ E + + +P I +G LA E +
Sbjct: 77 PAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQ 136
Query: 148 THLKELSKPVTT--PEEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV----- 193
L E++ V E + ++A S G K +L +A+K+V ++
Sbjct: 137 EILDEIAIRVDPDDEETLLKIAATSITG-KNAESHKELLAKLAVEAVKQVAEKKDGKYVV 195
Query: 194 ------ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL------ 241
K G+ + + E++ G+ D+ + P ++A + L
Sbjct: 196 DLDNIKFEKKAGEGVEES-ELVRGVVIDKEVVHP-------RMPKRVENAKIALINEALE 247
Query: 242 -------SESKISS---IQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG-- 289
++ I+S + S + E K I + +V + I
Sbjct: 248 VKKTETDAKINITSPDQLMSFLEQ-EEKMLKDMVDHIAQTGAN------VVFVQKGIDDL 300
Query: 290 -LQV-AAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK 347
A +K+ ++ LA ATG + + ++DL DLG + K
Sbjct: 301 AQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTN------VKDLTPEDLGYAEVVEERK 354
Query: 348 --DDTLIL 353
+ +I
Sbjct: 355 LAGENMIF 362
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 82.2 bits (204), Expect = 5e-17
Identities = 63/365 (17%), Positives = 119/365 (32%), Gaps = 73/365 (20%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
LA GP G N ++ +T D T+ + +E+ Q+ AK++ ++
Sbjct: 23 LAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEV----QHPAAKMIVMASHMQE 78
Query: 102 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKP----V 157
+E GDGT V A A+ + E + G + E+ G +A + L +L +
Sbjct: 79 QEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNL 138
Query: 158 TTPEEIAQVATISANGDKAVG------ELISDAMKRVG-KEGVITVKD-------GKTLT 203
+E++ + S K G +LI+ A + G V + G +
Sbjct: 139 RDVDEVSSLLHTSVMS-KQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVH 197
Query: 204 DELEVIEGMKFDRGYIS-PYFINTAK---------------GAKVEFQDA----LVLLSE 243
V+ GM F + + AK V + A E
Sbjct: 198 SS-SVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGE 256
Query: 244 SKISSIQSIIPALELANSKRKPLVILAE-DVDGEALSTLVVNRLKIGLQVAAVKAPGFGD 302
+ + + + A+ V++ V AL N+ I V+ D
Sbjct: 257 ENL--MDAQVKAIA----DTGANVVVTGGRVADMALHYA--NKYNI----MLVRLNSKWD 304
Query: 303 NRKATLQDLAVATGGIVFGDEASPV-KLEDLQATDLGSVGEIVITK---DDTLILKVTSA 358
R+ L G A+ + +L ++G + +++ ++ K
Sbjct: 305 LRR-----LCKTVG-------ATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKE 352
Query: 359 PPCTC 363
Sbjct: 353 DGAIS 357
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 81.0 bits (201), Expect = 1e-16
Identities = 84/353 (23%), Positives = 135/353 (38%), Gaps = 69/353 (19%)
Query: 43 ADAVAVTMGPKGRNVILEQSWGSPK--ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT 100
D V T+GPKG + IL S +T DG T+ K I + N AK++ D++
Sbjct: 23 GDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV----DNPAAKVLVDMSRVQ 78
Query: 101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTP 160
++E GDGTT+ TVLA + +E I+K +P I G A + + L + +
Sbjct: 79 DDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSD 138
Query: 161 -----EEIAQVATISANGDKAVG-------ELISDAMKRVGKE------GVITVKDGKTL 202
+++ +A + + K + +L +A+ R+ VI K G +L
Sbjct: 139 EVKFRQDLMNIAGTTLSS-KLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIK-KLGGSL 196
Query: 203 TDELEVIEGMKFDR--GYISPYFINTAKGA---------KVEFQDALVLLSESKISSIQS 251
D + EG D+ G P I AK K++ + V + + +
Sbjct: 197 ADS-YLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRV--DSTAKVAE 253
Query: 252 IIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG---------LQVAAVKAPGFGD 302
I A E K K IL ++ +NR I V A++ F
Sbjct: 254 IEHA-EKEKMKEKVERILKHGIN------CFINRQLIYNYPEQLFGAAGVMAIEHADFVG 306
Query: 303 NRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK--DDTLIL 353
+ LA+ TGG + + + LGS I +D LI
Sbjct: 307 VER-----LALVTGGEIAST------FDHPELVKLGSCKLIEEVMIGEDKLIH 348
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 81.0 bits (201), Expect = 1e-16
Identities = 71/350 (20%), Positives = 131/350 (37%), Gaps = 58/350 (16%)
Query: 43 ADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102
ADA+ ++GPKG + +++ G IT DG T+ K +++ + A+++ +++ +
Sbjct: 24 ADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQV----LHPAARMLVELSKAQDI 79
Query: 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT--P 160
EAGDGTT+ ++A ++ + + KG +P I A+E L ++S+PV
Sbjct: 80 EAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDR 139
Query: 161 EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV----------ITVKDGKTLT 203
E + A S N K V + DA+ +V I K G T+
Sbjct: 140 ETLLNSAATSLNS-KVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTID 198
Query: 204 DELEVIEGMKFD--RGYISPYFINTAKGA---------KVEFQDALVLLSESKISSIQSI 252
D E++EG+ + AK K + + +V+ ++ +
Sbjct: 199 DC-ELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLRE 257
Query: 253 IPALELANSKRKPLVILAE--DVDGEALSTLVVNRLKIG---LQ-VAAVKAPGFGDNRKA 306
E A I +V L + R + L + +K D +
Sbjct: 258 ----ERAYILNLVKQIKKTGCNV---LLIQKSILRDALSDLALHFLNKMKIMVVKDIERE 310
Query: 307 TLQDLAVATGGIVFGDEASPVKLEDLQATDLGS---VGEIVITKDDTLIL 353
++ + G ++ A LGS E+ + LI
Sbjct: 311 DIEFICKTIGTKPVAH------VDQFTADMLGSAELAEEVSLNGSGKLIK 354
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 79.7 bits (197), Expect = 4e-16
Identities = 77/433 (17%), Positives = 144/433 (33%), Gaps = 75/433 (17%)
Query: 42 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTN 101
+AD + +GPK +L G +T DG + + I++ + AK + +++ +
Sbjct: 31 VADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDV----AHPAAKSMLELSRTQD 86
Query: 102 EEAGDGTTTATVLARAIAKEGFEK-ISKGANPIEIRRGVMLAVETIKTHLKELSKPVTT- 159
EE GDGTTT +LA I + I K +P+ I + + A+ +K++SKPV
Sbjct: 87 EEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVE 146
Query: 160 -PEEIAQVATISANGDKAVG-------ELISDAMKRVGKEGVITV--------------- 196
+ ++ S K V EL DA+K V K+ TV
Sbjct: 147 NDAAMKKLIQASIGT-KYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVR 205
Query: 197 ---KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKV------------EFQDALVLL 241
G + D V++G+ ++ + P + +V E Q + +
Sbjct: 206 VEKIPGGDVLDS-RVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIE 264
Query: 242 SESKISSI----QSIIPAL--ELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAV 295
E + I + + + ++ + LVI + V A L+
Sbjct: 265 KEEDWNRILQIEEEQVQLMCEQILAVRPT-LVITEKGVSDLAQHYLLKG----------- 312
Query: 296 KAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGS----VGEIVITKDD-T 350
+K+ +A TG + +EDL+ +D+G+ +I + +
Sbjct: 313 GCSVLRRVKKSDNNRIARVTGATIVNR------VEDLKESDVGTNCGLFKVEMIGDEYFS 366
Query: 351 LILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQI 410
+ + S + + F G
Sbjct: 367 FLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHH 426
Query: 411 RDQIEATTSDYER 423
+A T
Sbjct: 427 HGSGKACTIMLRG 439
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 78.0 bits (193), Expect = 1e-15
Identities = 76/366 (20%), Positives = 137/366 (37%), Gaps = 62/366 (16%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
G E + +A+ + ++GP G + ++ G +T DG T+ +++ +
Sbjct: 8 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDV----DH 63
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIK 147
AKL+ +++ + ++E GDGTT VLA A+ +E + + +G +PI I G A
Sbjct: 64 QIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 123
Query: 148 THLKELSKPVTTP----EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGVITV 196
HL ++S V E + Q A + K V E+ +A+ V V
Sbjct: 124 EHLDKISDSVLVDMKNTEPLIQTAKTTLGS-KVVNSCHRQMAEIAVNAVLTVADMQRRDV 182
Query: 197 ---------KDGKTLTDELEVIEGMKFDRGYIS---PYFINTAKGA---------KVEFQ 235
K G L D ++I+G+ D+ + P + AK A K + +
Sbjct: 183 DFELIKVEGKVGGRLEDT-KLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTK 241
Query: 236 DALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG---LQ- 291
L + S ++Q E + I + L V +
Sbjct: 242 HKLDVTSVEDFKALQKY----EKEKFEEMIRQIKETGAN------LAVCQWGFDDEANHL 291
Query: 292 VAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEI----VITK 347
+ P ++ +A+ATGG + +L A LG G + T
Sbjct: 292 LLQNDLPAVRWVGGPEIELIAIATGGRIVPR------FSELTAEKLGFAGLVKEISFGTT 345
Query: 348 DDTLIL 353
D +++
Sbjct: 346 KDKMLV 351
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 76.4 bits (189), Expect = 4e-15
Identities = 74/368 (20%), Positives = 134/368 (36%), Gaps = 69/368 (18%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWG-SPKITKDGVTVAKGIELKDKFQ 86
R G + D V T+GPKG + +L+ + + +T DG T+ K I L
Sbjct: 15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPL----D 70
Query: 87 NIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGA-NPIEIRRGVMLAVET 145
N AK++ +++ ++E GDGTT+ TVL+ + +E + I + +P I G LA
Sbjct: 71 NPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAA 130
Query: 146 IKTHLKELSKPVTTPEEIA-----QVATISANGDKAVG-------ELISDAMKRVGKE-- 191
L + + + + + +A + + K + EL ++A+ R+
Sbjct: 131 ALDALTKAAVDNSHDKTMFREDLIHIAKTTLSS-KILSQDKDHFAELATNAILRLKGSTN 189
Query: 192 ----GVITVKDGKTLTDELEVIEGMKFDRGYIS--PYFINTAKGA---------KVEFQD 236
+I G L+D + EG + + + P I AK KV+
Sbjct: 190 LEHIQIIK-ILGGKLSDS-FLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFG 247
Query: 237 ALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIG------- 289
+ + + + A E K K I ++ +NR I
Sbjct: 248 TKFKV--DSTAKLAQLEKA-EREKMKNKIAKISKFGIN------TFINRQLIYDYPEQLF 298
Query: 290 --LQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITK 347
L + +++ F + LA+ TGG V ++ LG I
Sbjct: 299 TDLGINSIEHADFEGVER-----LALVTGGEVVST------FDEPSKCKLGECDVIEEIM 347
Query: 348 --DDTLIL 353
+ +
Sbjct: 348 LGEQPFLK 355
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 74.9 bits (185), Expect = 1e-14
Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 33/221 (14%)
Query: 43 ADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102
A+ V ++GP G + +L G +T DG T+ +++ Q+ K++ ++A +
Sbjct: 37 ANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDV----QHPAGKILVELAQQQDR 92
Query: 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE-LSKPVTT-- 159
E GDGTT+ ++A + K E + +P I G +A+ + E LS V T
Sbjct: 93 EIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLG 152
Query: 160 PEEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV------------ITVKDGK 200
E + +A S + K +G ++ DA+ V + + GK
Sbjct: 153 KETLINIAKTSMSS-KIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGK 211
Query: 201 TLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL 241
+ T+ ++ G + S K ++ + +
Sbjct: 212 SATES-LLVPGYALNCTVASQ---AMPK--RIAGGNVKIAC 246
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 73.0 bits (180), Expect = 5e-14
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 43 ADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNE 102
A+ V ++GP G + +L G IT DG T+ K +E+ ++ AK++ ++A+ ++
Sbjct: 23 ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEV----EHPAAKVLCELADLQDK 78
Query: 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKE-LSKPVTTP- 160
E GDGTT+ ++A + K E + + +P + G LA + ++ E L
Sbjct: 79 EVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG 138
Query: 161 -EEIAQVATISANGDKAVG-------ELISDAMKRVGKEGV------------ITVKDGK 200
+ + A S + K +G L+ DA+ + + + G+
Sbjct: 139 RDCLINAAKTSMSS-KVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGR 197
Query: 201 TLTDELEVIEGMKFDRGYISP 221
+ + +I G + S
Sbjct: 198 SQMES-MLINGYALNCVVGSQ 217
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 71.0 bits (175), Expect = 2e-13
Identities = 60/325 (18%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 68 ITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 127
IT DG T+ K +++ Q+ AK++ +V+ + E GDGTTTA VL+ + + E I
Sbjct: 11 ITNDGATILKEMDI----QHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIM 66
Query: 128 KGANPIEIRRGVMLAVETIKTHLKELSKPVTT--PEEIAQVATISANGDKAVG------- 178
KG + I G A E + L+ ++ ++ + ++A + G K
Sbjct: 67 KGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITG-KGAEAYKEKLS 125
Query: 179 ELISDAMKRVGKEGVITV------------KDGKTLTDELEVIEGMKFDRGYISPYFINT 226
L A++ + +E + + G ++ D E+I+G+ D+ P
Sbjct: 126 ALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDS-ELIDGLVIDKERSHPNMPEK 184
Query: 227 AKGAKV------------EFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVD 274
+ AK+ E + + S ++ E + ++A +
Sbjct: 185 VENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQ----EEKMMREMAEKVIASGAN 240
Query: 275 GEALSTLVVNRLKIG---LQ-VAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 330
+V + I + +K+ L+ L+ TG + D L+
Sbjct: 241 ------VVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQD------LD 288
Query: 331 DLQATDLGSVGEIVITK--DDTLIL 353
+ D+G+ G + + +
Sbjct: 289 QITTEDVGTAGLVEEKEVRGGKMTY 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 6e-09
Identities = 88/528 (16%), Positives = 143/528 (27%), Gaps = 237/528 (44%)
Query: 4 LPRVLRSQNLTPLLRRAYAKDVR----FG--------------------PEVRGLMLQGV 39
R ++ + L R + + FG V L+
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 40 DILADAVAVTMG-----PKGRNVILEQSWGS-PKITKDG-----VTVAKGIELKDKFQNI 88
+ L++ + T+ +G N++ W P T D + ++ I
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNIL---EWLENPSNTPDKDYLLSIPIS--------CPLI 241
Query: 89 GAKLVQ-----DVANNTNEEAGD------GTT-------TATVLARAIAKEGFEKISK-- 128
G ++Q A G+ G T TA +A + E F +
Sbjct: 242 G--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 129 -------G-----ANP------------IEIRRGV---MLAV-----ETIKTHLKELSKP 156
G A P +E GV ML++ E ++ ++ + +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS- 358
Query: 157 VTTPEEIAQVATIS-ANGDKAVGELISDAMKRVGKEGVITVKDG--KTLTDELEVIEGMK 213
P QV IS NG K + V++ G ++L
Sbjct: 359 -HLPAG-KQVE-ISLVNGAKNL---------------VVS---GPPQSL----------- 386
Query: 214 FDRGYISPYFINTAKGAKVEFQDALVLLSESKISS--IQSIIPALELANSKRKPLVILAE 271
Y +N L ++K S QS IP S+RK
Sbjct: 387 --------YGLNLT-------------LRKAKAPSGLDQSRIPF-----SERKL------ 414
Query: 272 DVDGEALSTLVVNR-LKIGLQVAAVKAPGF-----GDNRKATLQDLAVATGGIVF--GDE 323
NR L + +P F +DL + F D
Sbjct: 415 ---------KFSNRFLPVA-------SP-FHSHLLVPASDLINKDL--VKNNVSFNAKDI 455
Query: 324 ASPVKL----EDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSC--EKAPCITKNLI 377
PV DL+ G I + ++ + P E T+
Sbjct: 456 QIPVYDTFDGSDLRVLS----GSIS----ERIVDCIIRLP------VKWETT---TQFKA 498
Query: 378 THYFIDIELLLISFDSPQGKGKKEDIDRRADQIRD-----QIEATTSD 420
TH +D F G G + + +D I A T D
Sbjct: 499 TH-ILD-------F----GPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 35.4 bits (81), Expect = 0.048
Identities = 32/169 (18%), Positives = 46/169 (27%), Gaps = 54/169 (31%)
Query: 1 MYRLPRVLRS--------QNLTPLLRRAYAKDVRFGPEVRGLMLQGV------DILADAV 46
+Y L LR Q+ P R RF P V +L A
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---------VASPFHSHLLVPAS 436
Query: 47 AVTMGP-KGRNVILEQSWGSPKI----TKDGVTVAKGIELKDKFQNIGAKLVQDVA---- 97
+ NV +I T DG +L+ +I ++V +
Sbjct: 437 DLINKDLVKNNVSFNAK--DIQIPVYDTFDGS------DLRVLSGSISERIVDCIIRLPV 488
Query: 98 ---NNTNEEA------GDGTTT--ATVLARAIAKEGFEKISKGA---NP 132
T +A G G + + R G I G NP
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 31.6 bits (71), Expect = 0.65
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 20/74 (27%)
Query: 406 RADQIRDQ--------IEATTSDYEREKLQERLAR----LASGVAVLKVGGSSEV---SL 450
A Q+++Q E +D E E + + ++S V KVG +V L
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 451 -----EYPVNIDIH 459
Y DIH
Sbjct: 89 TEFENCYLEGNDIH 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 6e-08
Identities = 49/426 (11%), Positives = 121/426 (28%), Gaps = 124/426 (29%)
Query: 81 LKDKFQNIGAKLVQDV--------ANNTNEEAGD--GTTTATVLARAIAKEGFEKISKGA 130
L K + + K V++V + E T + R + +K
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129
Query: 131 NPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGE--LISDAMKRV 188
+ R ++ L EL P + + +G G+ + D
Sbjct: 130 ---NVSRLQP--YLKLRQALLELR-----PAKN-----VLIDGVLGSGKTWVALDVCLSY 174
Query: 189 GKE-----GV--ITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLL 241
+ + + +K+ + LE+++ + + I P + ++ + + L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWT-----SRSDHSSNIKLR 226
Query: 242 SESKISSIQSIIPALELANSKRKPLVILAEDV-DGEALSTLVVNRLKIGLQVAAVKAPGF 300
S + ++ ++ + N L++L +V + + N + ++
Sbjct: 227 IHSIQAELRRLLKSKPYENC----LLVL-LNVQNAK-----AWNAFNLSCKIL------- 269
Query: 301 GDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLIL------- 353
T + V + + + L+ T +T D+ L
Sbjct: 270 -----LTTRFKQVTD--FLSAATTTHISLDHHSMT---------LTPDEVKSLLLKYLDC 313
Query: 354 KVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLIS-FDSPQGKGKKEDIDR------- 405
+ P +S + ++ +
Sbjct: 314 RPQDLPREVLT-------------------TNPRRLSII----AESIRDGLATWDNWKHV 350
Query: 406 RADQIRDQIEATTSDYEREKLQERLARLA---SGV----AVLKV--GGSSEVSLEYPVNI 456
D++ IE++ + E + ++ RL+ +L + + + VN
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 457 DIHNSL 462
SL
Sbjct: 411 LHKYSL 416
Score = 43.7 bits (102), Expect = 1e-04
Identities = 51/339 (15%), Positives = 97/339 (28%), Gaps = 119/339 (35%)
Query: 149 HLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEV 208
++++ K + + EEI + +S + L + +E V + V
Sbjct: 37 DVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLF-WTLLSKQEEMV-----------QKFV 83
Query: 209 IEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPAL--ELANSKRKPL 266
E ++ + ++ S I + + P++ + +R L
Sbjct: 84 EEVLRINYKFLM-----------------------SPIKT-EQRQPSMMTRMYIEQRDRL 119
Query: 267 VILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASP 326
D + + V+RL+ L++ R+A L +L A ++ G
Sbjct: 120 Y-----NDNQVFAKYNVSRLQPYLKL-----------RQA-LLELRPAKNVLIDG----- 157
Query: 327 VKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPC-----TCKSCEKAPCITKNLIT-HY 380
LGS G+ + D L KV K+C + + L Y
Sbjct: 158 ---------VLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 381 FIDIELLLISFDSPQGKGKKEDIDRRA----------------DQIRDQ--IEA------ 416
ID S S K + I +++ A
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 417 ---TTSDYEREKLQERLARLASGVA-VLKVGGSSEVSLE 451
TT V L ++ +SL+
Sbjct: 268 ILLTTRF--------------KQVTDFLSAATTTHISLD 292
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 33.0 bits (75), Expect = 0.23
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 349 DTLILKVTSAPPCTCKSCEKAPCITKNLITHYFID-----------IELLLISFDSPQGK 397
DTL + PCT + C + + + L T + + + S +
Sbjct: 46 DTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSS-IKR 104
Query: 398 GKKEDIDRRADQIRDQIEAT-TSDYEREKLQERLARLA 434
+ + R ++ ++ +T T +L A+ A
Sbjct: 105 SGSQAHEERLQEVEAEVASTGTYHLRESEL-VFGAKQA 141
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu
genomics, protein structure initiative, midwest center
for structural genomics; HET: GOL; 2.00A {Rhodococcus
jostii}
Length = 150
Score = 30.4 bits (69), Expect = 0.71
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 394 PQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 436
+G+ ++D R D + D ++++ L +A
Sbjct: 102 EEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSIAFP 144
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 31.0 bits (70), Expect = 0.73
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 349 DTLILKVTSAPPCTCKSCE----------KAPCITKNLITHYFIDIELLLISFDSPQGKG 398
DTL K TS C KSC + P + + + +
Sbjct: 27 DTLHHKATSDFTCKSKSCLGSIMNPKSLTRGPRDKPTPLEELLPHAIEFINQYYGSFKEA 86
Query: 399 KKEDIDRRADQIRDQIEAT-TSDYEREKLQERLARLA 434
K E+ R + + +IE T T ++L ++A
Sbjct: 87 KIEEHLARLEAVTKEIETTGTYQLTLDEL-IFATKMA 122
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium
acetobutylicum}
Length = 517
Score = 30.3 bits (67), Expect = 1.5
Identities = 7/66 (10%), Positives = 16/66 (24%)
Query: 270 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 329
DG + +V+N+ + + + I D+ S +
Sbjct: 433 VTSNDGNKMDIIVMNKNYTDSINFNFNVSSNKNYTSGQVWGFDSNSSNITKRDDVSSISG 492
Query: 330 EDLQAT 335
Sbjct: 493 NKFTYK 498
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; 2.20A {Silicibacter pomeroyi}
Length = 161
Score = 29.3 bits (66), Expect = 1.8
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 393 SPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVA 438
+ +GK K +I + ++ + + E L + G
Sbjct: 114 TRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKT 159
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel,
composite domain of glycosyl HY families 5, 30, 39 and
51, hydrolase; 0.96A {Clostridium thermocellum} PDB:
2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*
Length = 519
Score = 29.1 bits (64), Expect = 3.3
Identities = 6/66 (9%), Positives = 14/66 (21%)
Query: 270 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 329
D L +++N+ + + + I +K
Sbjct: 438 IVGEDDSKLHIILLNKNYDQPTTFNFSIDSSKNYTIGNVWAFDRGSSNITQRTPIVNIKD 497
Query: 330 EDLQAT 335
T
Sbjct: 498 NTFTYT 503
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05
2, protein structure initiative, midwest center for
structu genomics; 2.15A {Enterococcus faecalis}
Length = 372
Score = 28.9 bits (65), Expect = 3.4
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 173 GDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFI 224
GD + E + ++ + + L+ I G +R + +
Sbjct: 222 GDPTISERTMAQFGYYHQTNQFLLEVAPSESRYLKRILGTHTNRLDAARDVL 273
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 399 KKEDIDRRADQIRDQIEATTSDYEREKLQERL 430
K D+++ +Q+R+++ T S+ +R+KL +R+
Sbjct: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRI 221
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural
genomic protein structure initiative; 2.10A {Pseudomonas
aeruginosa} SCOP: a.4.5.28
Length = 142
Score = 27.7 bits (62), Expect = 4.4
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 393 SPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLA 434
+ +G+ + ++ +I+ + + +L E L L
Sbjct: 97 TEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELK 138
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 28.4 bits (64), Expect = 4.5
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 24 DVRFGPE-VRGLMLQGVDIL 42
DV F PE VR +G ++
Sbjct: 167 DVEF-PEMVRAAAARGAQLV 185
>3ech_A MEXR, multidrug resistance operon repressor; winged helix,
helix-turn-helix, protein-peptide complex; 1.80A
{Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Length = 142
Score = 27.7 bits (62), Expect = 4.8
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 394 PQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 436
+G + ++ D++ A + E+ L L + +
Sbjct: 99 DEGLAIHLHAELIMSRVHDELFAPLTPVEQATLVHLLDQCLAA 141
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription
factor, structur genomics, oxford protein production
facility; 2.10A {Neisseria meningitidis serogroup B}
Length = 145
Score = 27.8 bits (62), Expect = 5.0
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 393 SPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLA 434
+ GK + A + D++ AT D +L L LA
Sbjct: 92 TETGKAYAAPLTESAQEFSDKVFATFGDKRTTRLFADLDALA 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 422 ERE---KLQERLARLASGVA-VLKVGGSSE 447
E++ KLQ L A A L + + E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3s2w_A Transcriptional regulator, MARR family; structural genomics,
PSI-biology, protein structure initiati midwest center
for structural genomics; 2.45A {Methanosarcina mazei}
Length = 159
Score = 27.3 bits (61), Expect = 7.3
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 394 PQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLA 434
+GK + D+ + A + + + ++ D +R ++ L +
Sbjct: 112 EKGKKLEPDMKKIASEWGEILFSSFDDRQRREITNSLEIMF 152
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.3 bits (64), Expect = 7.9
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 136 RRGVMLAVETIKTHLKELSKPVTTPEEIAQ-------VATISANGDKAVGELISDAMKRV 188
+RG +L + +L P+ E+ VA +S D + DA+ +
Sbjct: 524 KRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEVSTLYDLDGVNSLEDALTNL 583
Query: 189 GKEGVITVKDGKT---LTDELEVIEGMKFDRGYISP 221
K + TV+ G LTD + ++ +I P
Sbjct: 584 VKTAIATVQAGAEILVLTDR-PNGAILTENQSFIPP 618
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: a.4.5.59
Length = 120
Score = 26.7 bits (58), Expect = 8.0
Identities = 15/97 (15%), Positives = 38/97 (39%)
Query: 103 EAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEE 162
+G + + EKI + +++ +ET+++ S+PVT
Sbjct: 2 SSGSSGNKDNLDLAGLTSLLSEKIKEFLQEKKMQSFYQQELETVESLQSLASRPVTHSTG 61
Query: 163 IAQVATISANGDKAVGELISDAMKRVGKEGVITVKDG 199
QV + + +A++ + ++G++ +D
Sbjct: 62 SDQVELKDSGTSGVAQRVFKNALQLLQEKGLVFQRDS 98
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural
genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Length = 180
Score = 27.2 bits (60), Expect = 8.7
Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 24/121 (19%)
Query: 192 GVITVKDGKTLTDELEVIEGMK-----FDRGYIS-------PYFINTAKGAKVEF----- 234
G + + D + + F Y Y + + +F
Sbjct: 60 GKLEIVSNGERLDFERLYQIGVTQIPRFRILYSVYEDLREKGYVVRSGIKYGADFAVYTI 119
Query: 235 -------QDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLK 287
++ L E+ S I+ +++S RK L++ ++ + ++ LK
Sbjct: 120 GPGIEHAPYLVIALDENSQISSNEILGFGRVSHSTRKELILGIVNLTNGKIRYIMFKWLK 179
Query: 288 I 288
+
Sbjct: 180 M 180
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription
regulator, activator, DNA-binding, repressor; HET: SAL;
2.30A {Salmonella typhimurium} SCOP: a.4.5.28 PDB:
3qpt_A* 3q5f_A*
Length = 166
Score = 27.0 bits (60), Expect = 8.9
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 394 PQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLA 434
+ + +++ + R +I A S E E L + +A+L
Sbjct: 116 EKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLE 156
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura
genomics, PSI-2, protein structure initiative; 2.69A
{Silicibacter pomeroyi dss-3}
Length = 155
Score = 26.9 bits (60), Expect = 8.9
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 394 PQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARL 433
G+ E + A ++ + +D + +++ L L
Sbjct: 105 DDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTL 144
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 27.7 bits (62), Expect = 9.3
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 124 EKISKGANPIEIRRGVMLA---VETIKTHLKELSKPVTTPEEIA------QVATISANGD 174
K+ K +E R G L ++ ++ L + TPE++ V +
Sbjct: 505 SKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFT 564
Query: 175 KAVGELISDAMK------RVGKEGVITVKDGKTLTDELEVI 209
G L S + ++ +E + ++ GKTL + +
Sbjct: 565 ATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAV 605
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.364
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,983,466
Number of extensions: 452252
Number of successful extensions: 1277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 99
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.2 bits)