RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2267
(462 letters)
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId:
562]}
Length = 193
Score = 224 bits (573), Expect = 2e-72
Identities = 102/233 (43%), Positives = 132/233 (56%), Gaps = 42/233 (18%)
Query: 205 ELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRK 264
EGM+FDRGY+SPYFIN + VE + +LL++ KIS+I+ ++P LE K
Sbjct: 3 VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62
Query: 265 PLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEA 324
PL+I+AEDV+GEAL+TLVVN ++ ++VAAVKAPGFGD RKA LQD+A TGG V +E
Sbjct: 63 PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122
Query: 325 SPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDI 384
++LE DLG +VI KD T I+
Sbjct: 123 G-MELEKATLEDLGQAKRVVINKDTTTII------------------------------- 150
Query: 385 ELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGV 437
G G++ I R QIR QIE TSDY+REKLQER+A+LA GV
Sbjct: 151 ----------DGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGV 193
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 218 bits (557), Expect = 4e-70
Identities = 98/218 (44%), Positives = 131/218 (60%), Gaps = 42/218 (19%)
Query: 210 EGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVIL 269
EGM+FDRGY+SPYF+ A E +DA +LL E K+SS+Q ++P LE +KPL+I+
Sbjct: 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60
Query: 270 AEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKL 329
AEDV+GEAL+TLVVN+L+ GL++AAVKAPGFGD RKA LQD+A+ TGG V ++ +KL
Sbjct: 61 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLG-MKL 119
Query: 330 EDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLI 389
E++ LG ++ I KD+T I+
Sbjct: 120 ENVTIDMLGRAKKVSINKDNTTIV------------------------------------ 143
Query: 390 SFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQ 427
G G+K +I+ R QIR QIE TTSDY+REKLQ
Sbjct: 144 -----DGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 176
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 213 bits (544), Expect = 3e-68
Identities = 92/226 (40%), Positives = 129/226 (57%), Gaps = 42/226 (18%)
Query: 211 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 270
GM+FD+GYIS YF+ + + +D +LL SK+S+++ ++P LE KPL+I+A
Sbjct: 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60
Query: 271 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 330
EDV+GEALSTLVVN+++ + AVKAPGFGD RKA LQD+A+ TGG V +E + LE
Sbjct: 61 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVG-LTLE 119
Query: 331 DLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLIS 390
+ + LG ++V+TKD+T I+
Sbjct: 120 NADLSLLGKARKVVVTKDETTIV------------------------------------- 142
Query: 391 FDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASG 436
+G G + I R QIR +IE + SDY+REKLQERLA+LA G
Sbjct: 143 ----EGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGG 184
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 188 bits (477), Expect = 2e-57
Identities = 92/250 (36%), Positives = 141/250 (56%), Gaps = 21/250 (8%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AKDV+FG + ML+GV++LADAV VT+GPKGRNV+L++S+G+P ITKDGV+VA+ IEL
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+DKF+N+GA++V++VA+ N+ AGDGTTTATVLA+AI EG + ++ G NP++++RG+
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 142 AVETIKTHLKELSKPVTTPEEI-------AQVATISANGDKAVG-ELISDAMKRVGKEGV 193
AV LK LS V + N D+ VG ++ AM+ ++ V
Sbjct: 122 AVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIV 181
Query: 194 ITV-------------KDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVL 240
+ DG + G D G + P + + L++
Sbjct: 182 LNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMI 241
Query: 241 LSESKISSIQ 250
+E ++ +
Sbjct: 242 TTECMVTDLP 251
Score = 30.5 bits (68), Expect = 0.30
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 294 AVKAPGFGDN-RKATLQDLAVATGGIV--FGDEASPVKLEDLQATDLGSVGEIVITKDDT 350
A K FG++ L+ + V + G + V L+ G ITKD
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF-------GAPTITKDGV 53
Query: 351 LILK 354
+ +
Sbjct: 54 SVAR 57
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId:
274]}
Length = 145
Score = 184 bits (468), Expect = 2e-57
Identities = 70/143 (48%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Query: 211 GMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILA 270
G +FD+GYISPYF+ + + +DA +L+ E K+S+++ ++P LE KPL+I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 271 EDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLE 330
EDV+GEAL+TLVVN+L+ L VAAVKAPGFGD RK L+D+A TGG V +E KLE
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELG-FKLE 119
Query: 331 DLQATDLGSVGEIVITKDDTLIL 353
+ + LG + ITKD+T I+
Sbjct: 120 NATLSMLGRAERVRITKDETTIV 142
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 174 bits (443), Expect = 2e-52
Identities = 93/255 (36%), Positives = 149/255 (58%), Gaps = 32/255 (12%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK+V+F + R ML+GV+ILADAV VT+GPKGRNV++++S+G+P+ITKDGV+VAK IEL
Sbjct: 2 AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 61
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
DKF+N+GA++V++VA+ TN+EAGDGTTTATVLA+AI +EG + ++ G NP++++RG+ +
Sbjct: 62 SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 121
Query: 142 AVETIKTHLKELSKPVTTPEEIAQV-------ATISANGD---------KAVGELISDAM 185
A + +K ++ + +A V AN D +A+ +
Sbjct: 122 ATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIA 181
Query: 186 KRVGKEGVITVKDGKTLTDELEVIE------GMKFDRGYISPYFINTAKGAKVEFQDA-- 237
+ G +G + + +D+ G F G I P + + +DA
Sbjct: 182 ENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKV-----VRTALEDAAS 236
Query: 238 ---LVLLSESKISSI 249
L++ +E+ I+
Sbjct: 237 VAGLLITTEAMIAEK 251
Score = 31.7 bits (71), Expect = 0.16
Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 50/151 (33%)
Query: 294 AVKAPGFGDN-RKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLI 352
A K F + R L+ + L D LG G V+
Sbjct: 1 AAKEVKFNSDARDRMLKGVN---------------ILADAVKVTLGPKGRNVVIDKSF-- 43
Query: 353 LKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRD 412
AP ITK+ ++ + + + Q+
Sbjct: 44 ---------------GAPRITKDGVS--------------VAKEIELSDKFENMGAQMVR 74
Query: 413 QIEATTSDYEREKLQERLARLASGVAVLKVG 443
++ + T+D E A+++ G
Sbjct: 75 EVASRTND---EAGDGTTTATVLAQAIVREG 102
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 165 bits (417), Expect = 1e-48
Identities = 86/254 (33%), Positives = 137/254 (53%), Gaps = 26/254 (10%)
Query: 22 AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
AK + F R + +GV+ +A+AV VT+GP+GRNV+LE+ +GSP ITKDGVTVAK +EL
Sbjct: 1 AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVEL 60
Query: 82 KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
+D +NIGA+L+++VA+ TN+ AGDGTTTATVLA+AI +EG + ++ GANP+ ++RG+
Sbjct: 61 EDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 120
Query: 142 AVETIKTHLKELSKPVTT----------PEEIAQVATISANGDKAVG-ELISDAMKRVGK 190
AVE +K L+ PV + GD+A G +++ A++ +
Sbjct: 121 AVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPAR 180
Query: 191 EGVITVKDGKTLTDE------------LEVIEGMKFD---RGYISPYFINTAKGAKVEFQ 235
+ ++ + G D G + P + +
Sbjct: 181 QIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASI 240
Query: 236 DALVLLSESKISSI 249
AL+L +E+ ++
Sbjct: 241 GALILTTEAVVAEK 254
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 139 bits (351), Expect = 5e-39
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 31/253 (12%)
Query: 23 KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELK 82
G + + L + I+A+ V T+GPKG + +L S G +T D T+ I+L
Sbjct: 8 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL- 66
Query: 83 DKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIR----RG 138
Q+ AK++ +VA ++EAGDGTTTA V+A + ++ E + + +P I
Sbjct: 67 ---QHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALA 123
Query: 139 VMLAVETIKTHLKELSKPVTTPEEIAQVATISANG------DKAVGELISDAMKRV---- 188
A E + P EI + + E +DA+K +
Sbjct: 124 AEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTL 183
Query: 189 ----GKEGVI------TVKDGKTLTDELEVIEGMKFD---RGYISPYFINTAKGAKVEFQ 235
G + V + + L ++V EG D +G I P +
Sbjct: 184 AENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEA 243
Query: 236 DALVLLSESKISS 248
++L + I++
Sbjct: 244 AIMILRIDDVIAA 256
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 118 bits (297), Expect = 2e-31
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 12/238 (5%)
Query: 28 GPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQN 87
G + ++ +ADAV T+GPKG + +L S G I+ DG T+ K +++ ++
Sbjct: 4 GKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDV----EH 59
Query: 88 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIK 147
AK++ +V+ + GDGTTTA VL+ + K+ + +G +P I G LAV +
Sbjct: 60 PTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEAR 119
Query: 148 THLKE------LSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
+ E L E+A AN +L +A + + T+ +
Sbjct: 120 KIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAG 179
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELA 259
+ +I+ D ++ + + V+ + ++ A+E+A
Sbjct: 180 IDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVV--DPLRVKTHALESAVEVA 235
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 117 bits (293), Expect = 8e-31
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 13/239 (5%)
Query: 30 EVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIG 89
+ ++ ++++V ++GP+G + +L S G IT DGVT+ K +++ ++
Sbjct: 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDV----EHPA 57
Query: 90 AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTH 149
AK++ +V+ + GDGTTTA ++A + ++ I++ +P I G +A E K
Sbjct: 58 AKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRV 117
Query: 150 LKELSKPVT-------TPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTL 202
+ E+S + T EIA A +L + +E + + L
Sbjct: 118 IDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGL 177
Query: 203 TDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
+++ Y IN G + V+ E Q+I A E A
Sbjct: 178 DPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVI--EPIRVGKQAIESATEAAIM 234
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 89
Score = 100 bits (251), Expect = 1e-26
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 157 VTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDR 216
V T E+IA A ISA GD+++G+LI++AM +VG EGVITV++ T +LE+ E
Sbjct: 2 VETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIKA 60
Query: 217 GYISPYFINTAKG-AKVEFQDALVLLSE 243
G + + K + ++A + E
Sbjct: 61 GAATEVELKERKHRIEDAVRNAKAAVEE 88
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 89.4 bits (222), Expect = 1e-22
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 161 EEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYIS 220
+ I +VATISAN D VG+LI+DAM++VGKEG+ITV++ K+L EL+ + +
Sbjct: 4 KAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVI---RVG 59
Query: 221 PYFINTAKGAKVEFQDAL 238
K K F+DAL
Sbjct: 60 AATETELKEKKHRFEDAL 77
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 91.4 bits (226), Expect = 3e-22
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 83 DKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 142
D ++ IGA+LV++VA T++ AGDGTTTATVLA+A+ +EG ++ GANP+ ++RG+ A
Sbjct: 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 60
Query: 143 VETIKTHLKELSKPVTTPEEIAQVATISANG 173
VE + L + +K V A + +
Sbjct: 61 VEKVTETLLKGAKIVAGGGVTLLQAAPTLDE 91
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia
coli [TaxId: 562]}
Length = 97
Score = 87.7 bits (217), Expect = 6e-22
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Query: 156 PVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFD 215
P + + IAQV TISAN D+ VG+LI++AM +VGKEGVITV+DG L DEL+V+E +
Sbjct: 1 PCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKL 60
Query: 216 RGYISPYFINTA-----KGAKVEFQDAL 238
G ++ + A K K +DAL
Sbjct: 61 AGGVAVIKVGAATEVEMKEKKARVEDAL 88
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 97
Score = 82.3 bits (203), Expect = 6e-20
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 156 PVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFD 215
PV E+AQV TISANG+ +G+ I++AM+RVG EGVITV++ K + E+EV+E +
Sbjct: 1 PVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKL 60
Query: 216 RGYISPYFINT-----AKGAKVEFQDAL 238
G ++ + K K DAL
Sbjct: 61 AGGVAVIRVGGMTEIEVKERKDRVDDAL 88
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 32.4 bits (74), Expect = 0.11
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 349 DTLILKVTSAPPCTCKSCEKAPCITKNLITH---YFIDIELLLIS-------FDSPQGKG 398
DTL + PCT + C + + + L T E LL + S +
Sbjct: 18 DTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRS 77
Query: 399 KKEDIDRRADQIRDQIEAT 417
+ + R ++ ++ +T
Sbjct: 78 GSQAHEERLQEVEAEVAST 96
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 30.9 bits (70), Expect = 0.31
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 349 DTLILKVTSAPPCTCKSCE--------------KAPCITKNLITHY--FIDIELLLISFD 392
DTL K TS C KSC P + L+ H FI+ +
Sbjct: 16 DTLHHKATSDFTCKSKSCLGSIMNPKSLTRGPRDKPTPLEELLPHAIEFIN------QYY 69
Query: 393 SPQGKGKKEDIDRRADQIRDQIEAT 417
+ K E+ R + + +IE T
Sbjct: 70 GSFKEAKIEEHLARLEAVTKEIETT 94
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 29.3 bits (66), Expect = 1.1
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 21/84 (25%)
Query: 349 DTLILKVTSAPPCTCKSCEKAPCITKN-------------LITHY--FIDIELLLISFDS 393
DTL LK T CT C + + L F+D + S
Sbjct: 16 DTLHLKSTLETGCTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLD------QYYS 69
Query: 394 PQGKGKKEDIDRRADQIRDQIEAT 417
+ + R +++ +IE+T
Sbjct: 70 SIKRFGSKAHMDRLEEVNKEIEST 93
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 439
Score = 28.8 bits (63), Expect = 1.6
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 31 VRGLMLQG--VDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVA 76
V + + G + + VA G + L SW P + +GV +
Sbjct: 395 VSEMNVTGNLITLWNSLVAT-----GNDPRLNSSWRIPSLVFEGVDFS 437
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 28.8 bits (64), Expect = 1.7
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 136 RRGVMLAVETIKTHLKELSKPVTTPEEIA-------QVATISANGDKAVGELISDAMKRV 188
+RG +L + +L P+ E+ QVA +S D + DA+ +
Sbjct: 94 KRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEVSTLYDLDGVNSLEDALTNL 153
Query: 189 GKEGVITVKDGKT---LTDELEVIEGMKFDRGYISPYFINTA 227
K + TV+ G LTD + ++ +I P A
Sbjct: 154 VKTAIATVQAGAEILVLTDR-PNGAILTENQSFIPPLLAVGA 194
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 120
Score = 27.2 bits (60), Expect = 1.9
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 143 VETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDG 199
+ET+++ S+PVT QV + + +A++ + ++G++ +D
Sbjct: 42 LETVESLQSLASRPVTHSTGSDQVELKDSGTSGVAQRVFKNALQLLQEKGLVFQRDS 98
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga
maritima [TaxId: 2336]}
Length = 433
Score = 28.4 bits (62), Expect = 2.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 31 VRGLMLQG--VDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVA 76
V + + G +D+L V V G +V + Q +P + + + VA
Sbjct: 391 VEDITISGNFLDLLRKIVLV-----GNDVKVSQHTIAPSVLVEVLDVA 433
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella
nidulans (Aspergillus nidulans) [TaxId: 162425]}
Length = 301
Score = 27.8 bits (61), Expect = 3.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 306 ATLQDLAVATGGIVFGDEASPVKLEDLQATDL 337
A+L DL VA G FG + L++ Q +
Sbjct: 1 ASLNDLFVAAGKSYFGTCSDQALLQNSQNEAI 32
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 26.5 bits (58), Expect = 3.6
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 393 SPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLA 434
+ +G+ E + R + ++I + + K+ + L L
Sbjct: 91 TRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELK 132
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 27.2 bits (60), Expect = 4.4
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 178 GELISDAMKRVGKEGVITVKDGKTLT 203
E++ D+ + G + G ++T
Sbjct: 64 SEVLQDSTFDLIDAGKLRFASGSSIT 89
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA
{Salmonella typhimurium [TaxId: 90371]}
Length = 140
Score = 26.1 bits (57), Expect = 5.3
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 393 SPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARL 433
+ + + +++ + R +I A S E E L + +A+L
Sbjct: 93 TEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKL 133
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 26.1 bits (57), Expect = 5.5
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 362 TCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDY 421
E+ I + T I+L L + +G K E++ I + + ++
Sbjct: 69 MADRLEQKNLIARTHNTKDRRVIDLSL----TDEGDIKFEEVLAGRKAIMARYLSFLTEE 124
Query: 422 EREKLQERLARLA 434
E + A+LA
Sbjct: 125 EMLQAAHITAKLA 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.364
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,609,790
Number of extensions: 76187
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 35
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)