BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2268
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 78.2 bits (191), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 2 GFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRK 61
G +YY LGL RGASD +IK A+R++A++Y+P++N + ++ F I EAY+VLSD ++
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 62 AIYDQYGEENLK 73
I+D+YGEE LK
Sbjct: 62 EIFDRYGEEGLK 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVK--SQAMFTLICEAYEVLSDKFRK 61
+YY +L + R AS DIK A+R+KA+Q++P++N D K ++ F + EAYEVLSDK ++
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 62 AIYDQYGEENL 72
IYD+YG E L
Sbjct: 63 EIYDRYGREGL 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRK 61
NYY VLG+ AS DIK A+RK A++++P++N D K +A F L+ EAYEVLSD ++
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 62 AIYDQYG 68
++YD+ G
Sbjct: 70 SLYDRAG 76
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY VLG+ ASD ++K A+RK A++++P++N D Q F I +AYEVLSD+ ++ IY
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ--FKQISQAYEVLSDEKKRQIY 67
Query: 65 DQYGEE 70
DQ GEE
Sbjct: 68 DQGGEE 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ A + +I+ A+++ A++Y+P+RN D +++A F I EAYEVL+D ++A
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 63 IYDQYG 68
YDQYG
Sbjct: 64 AYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ A + +I+ A+++ A++Y+P+RN D +++A F I EAYEVL+D ++A
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 63 IYDQYG 68
YDQYG
Sbjct: 64 AYDQYG 69
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 148 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKE 207
H + VSLEE+Y GC K + + + ++P + N KI+ I++K G E T FPKE
Sbjct: 16 HDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIR--NEDKILTIEVKKGWKEGTKITFPKE 73
Query: 208 PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSL 244
+ S + ++++ + KDKPH++F R+G+D+ +SL
Sbjct: 74 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISL 112
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNN-DVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ A + +I+ A+++ A++Y+P+RN D +++A F I EAYEVL+D ++A
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 63 IYDQYGEENLKRG 75
YDQYG ++G
Sbjct: 64 AYDQYGHAAFEQG 76
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 148 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKE 207
H + VSLEE+Y GC K + + + ++P + N KI+ I++K G E T FPKE
Sbjct: 9 HDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIR--NEDKILTIEVKKGWKEGTKITFPKE 66
Query: 208 PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSL 244
+ S + ++++ + KDKPH++F R+G+D+ +SL
Sbjct: 67 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISL 105
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 148 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKE 207
H + VSLEE+Y GC K + + + ++P + N KI+ I++K G E T FPKE
Sbjct: 7 HDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIR--NEDKILTIEVKKGWKEGTKITFPKE 64
Query: 208 PLEYSTS--SEVIVITKDKPHDVFWREGADLHMKKNVSL 244
+ S + ++++ + KDKPH++F R+G+D+ +SL
Sbjct: 65 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISL 103
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 62.0 bits (149), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY +LG++RGASD D+K A+R+ A++++P++N+ + F I AY VLS+ ++
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 64 YDQYG 68
YDQ+G
Sbjct: 68 YDQFG 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
+ F+ Y VLG++R AS DIK A++K A +++P++N D ++ F I +AYE+LS++ +
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74
Query: 61 KAIYDQYG 68
+ YD YG
Sbjct: 75 RTNYDHYG 82
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY +LG+ + AS+ IK AF K A++Y+P++N ++A F I EAYE LSD R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 65 DQYGEENLKRG 75
D G G
Sbjct: 69 DTLGHSAFTSG 79
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+ R AS +IK A+ + A +Y+P+ N +D K++ F+ + EAYEVLSD+ ++
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 63 IYDQYG 68
YD YG
Sbjct: 68 QYDAYG 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRK 61
+YY VL + R AS IK A+RK A++++P++N + K +A F + EAYEVLSD ++
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 62 AIYDQYG 68
IYD+YG
Sbjct: 70 DIYDRYG 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
N+Y++LG+++ AS +I+ AF+K A++ +P++N N+ + F I AYEVL D+ +
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 63 IYDQYGEENLK 73
YD+YGE+ L+
Sbjct: 82 KYDKYGEKGLE 92
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
N+Y++LG+++ AS +I+ AF+K A++ +P++N N+ + F I AYEVL D+ +
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 63 IYDQYGEENLK 73
YD+YGE+ L+
Sbjct: 63 KYDKYGEKGLE 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 2 GFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA-MFTLICEAYEVLSDKFR 60
G + Y VLGL + A+ DIK ++RK A++Y+P++N D A F I A+ +L+D +
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75
Query: 61 KAIYDQYGEENL 72
+ IYD+YG L
Sbjct: 76 RNIYDKYGSLGL 87
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY VLG+ A+ ++K A+RK A++Y+P++N + + F I +AYEVLSD ++ +Y
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK--FKQISQAYEVLSDAKKRELY 65
Query: 65 DQYGEE 70
D+ GE+
Sbjct: 66 DKGGEQ 71
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YYA+LG+ IK A+R+ A +Y+P+ + + ++A F + EA+EVL D+ R+A
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 64 YDQ 66
YDQ
Sbjct: 89 YDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YYA++G+ IK A+R+ A +Y+P+ + + ++A F + EA+EVLSD+ R+A
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 64 YDQ 66
YDQ
Sbjct: 66 YDQ 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 6 YAVLGLTRGASDYDIKMAFRKKAIQYNPER-NNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
Y +LG++ A++ ++K +RK A++Y+P++ D + F I EA+E+L+D ++ IY
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK---FKEISEAFEILNDPQKREIY 67
Query: 65 DQYGEE 70
DQYG E
Sbjct: 68 DQYGLE 73
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNND----VKSQAMFTLICEAYEVLSD 57
+YY +LG+ R A +I A+RK A+Q++P+ + K++ F I A EVLSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNND----VKSQAMFTLICEAYEVLSD-K 58
+YY +LG+ R A +I A+RK A+Q++P+ + K++ F I A EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 59 FRKAIYD 65
RK D
Sbjct: 443 MRKKFDD 449
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 6 YAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA-MFTLICEAYEVLSDKFRKAIY 64
Y +LG+ A+ IK A+ ++ Y+P+RN+ A FT I +AY VL + Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 65 DQ 66
D+
Sbjct: 80 DR 81
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 183 NTSKIVHIKIKPGLP--EHTVFKFPKEPLEYSTSSEVIVITKDKPHDVFWREGADLHMKK 240
N KI+ + ++PG+ + VFK + +V+ I ++PH F R+G DL +
Sbjct: 109 NERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEA 168
Query: 241 NVSL 244
+ L
Sbjct: 169 EIDL 172
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNN-DVKSQAM------FTLICEAYEVLS 56
++Y++LG A+ D+K ++K + Y+P++ + DV + M F I +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 57 DKFRKAIYD 65
++ K YD
Sbjct: 77 NEETKKKYD 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG +S I F+ +A++ +P+++ + K+ F + +A E+L+++ +A
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 63 IYDQY 67
YD +
Sbjct: 81 RYDHW 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNN-DVKSQAM------FTLICEAYEVLS 56
++Y++LG A+ D+K ++K + Y+P++ + DV + + F I +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 57 DKFRKAIYD-QYGEENLK 73
++ K YD Q E++L+
Sbjct: 71 NEETKREYDLQRCEDDLR 88
>pdb|2LHU|A Chain A, Structural Insight Into The Unique Cardiac Myosin
Binding Protein-C Motif: A Partially Folded Domain
Length = 124
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 14 GASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIYDQYGEENLK 73
G+ D D++ AFR+ ++ R +D A TL + D FR+ D E +
Sbjct: 26 GSGDLDLRSAFRRTSLAGAGRRTSDSHEDA-GTLDFSSLLKKRDSFRR---DSKLEAPAE 81
Query: 74 RGVVTPLGYVPPYEYDR 90
V L PP EY+R
Sbjct: 82 EDVWEILRQAPPSEYER 98
>pdb|4E4J|A Chain A, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|B Chain B, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|C Chain C, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|D Chain D, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|E Chain E, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|F Chain F, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|G Chain G, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|H Chain H, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|I Chain I, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|J Chain J, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|K Chain K, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|L Chain L, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
Length = 433
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 35 RNNDVKSQAMFTLICEAYEVLSDKFRKAIYDQYGEENL 72
+NN +K + L+ E YE+ S + R + +QY +E L
Sbjct: 91 QNNGIKVIQLCDLVAETYELCSKEVRNSFIEQYLDEAL 128
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 159 RGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKEPLEYSTSSEV 217
RGCV++ T V+++ P LN N + +H+ ++ + E V + P Y TS E+
Sbjct: 259 RGCVQIFTGVVEKVVPMKGWLNIFNPTFTLHL-LEESIAEAWVTRKPTSD-GYVTSLEL 315
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 159 RGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKEPLEYSTSSEV 217
RGCV++ T V+++ P LN N + +H+ ++ + E V + P Y TS E+
Sbjct: 259 RGCVQIFTGVVEKVVPMKGWLNIFNPTFTLHL-LEESIAEAWVTRKPTSD-GYVTSLEL 315
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 4 NYYAVLGLTRGASD-YDIKMAFRKKAIQYNPER--NNDVK--SQAMFTLICEAYEVLSDK 58
N Y VL + R D + A+R A +++P+R N + K ++ F +I AYE L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 59 FRKAIYDQY 67
K YD Y
Sbjct: 76 EAKTNYDYY 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,864,464
Number of Sequences: 62578
Number of extensions: 329142
Number of successful extensions: 774
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 36
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)