RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2268
(261 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 106 bits (268), Expect = 4e-27
Identities = 67/301 (22%), Positives = 107/301 (35%), Gaps = 89/301 (29%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVK-SQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ AS+ +IK A+RK A +Y+P+RN K ++ F I EAYEVLSD ++A
Sbjct: 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64
Query: 63 IYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQETS 122
YDQ+G K G G+ + D F +FFG RP + + +
Sbjct: 65 AYDQFGHAGFKAGGFGGFGFGG---FGGDFGDIFEDFFGGGGG-----GRRRPNRPRRGA 116
Query: 123 GDTATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEI---------- 172
D+ + + ++LEE G K + V
Sbjct: 117 ---------------DL-------RYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAK 154
Query: 173 -------------------------------------------DPCSV--QLNFINTSKI 187
DPC + K
Sbjct: 155 PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKS 214
Query: 188 VHIKIKPGLPEHTVFKFPKEPLEYSTSSE---VIVITKDKPHDVFWREGADLHMKKNVSL 244
+ + I G+ + + E + V KPH +F R+G DL+ + +S
Sbjct: 215 ISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISF 274
Query: 245 T 245
T
Sbjct: 275 T 275
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 100 bits (252), Expect = 8e-25
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 26/172 (15%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY +LG+++ AS+ +IK A+RK A +Y+P+RN D +++ F I EAYEVLSD ++A Y
Sbjct: 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61
Query: 65 DQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQETSGD 124
DQ+G G G + F F D ++ SG
Sbjct: 62 DQFGHAGFNGGGGGGGGGFNGF--------DIGFFGDFGDIFGDFFGGGGGSGRRRRSGP 113
Query: 125 TATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCS 176
+G D+ + ++ EE G K + +P +E C
Sbjct: 114 R-------RGE--DLRY-------DLELTFEEAVFGVEKEIEIPRKE--SCE 147
Score = 36.0 bits (84), Expect = 0.015
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 181 FINTSKIVHIKIKPGLPEHTVFKFPKE--PLEYSTSS-EVIVITKDKPHDVFWREGADLH 237
+ K + +KI G+ + + E + ++ V+ + KPH +F R+G DL+
Sbjct: 211 RVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLY 270
Query: 238 MKKNVSLT 245
++ +S T
Sbjct: 271 IEVPISFT 278
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 93.3 bits (233), Expect = 5e-22
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY VLG++R AS+ +IK A+RK A++Y+P+RN D +++ F I EAYEVLSD ++A
Sbjct: 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64
Query: 63 IYDQYG 68
YDQYG
Sbjct: 65 AYDQYG 70
Score = 32.4 bits (75), Expect = 0.20
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 224 KPHDVFWREGADLHMKKNVSLT 245
K H +F R+G DL+ + +S T
Sbjct: 252 KEHPIFERDGNDLYCEVPISFT 273
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 79.1 bits (196), Expect = 2e-19
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+ R ASD +IK A+RK A++Y+P++N D ++ F I EAYEVLSD ++A
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 63 IYD 65
IYD
Sbjct: 61 IYD 63
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 85.3 bits (211), Expect = 5e-19
Identities = 72/284 (25%), Positives = 109/284 (38%), Gaps = 73/284 (25%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
Y VL L++ + +IK A+RK AI+++P++ D F I AYEVLSD ++ IY
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIY 86
Query: 65 DQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQETSGD 124
D+YGEE L+ G E D F FG R P ++ D
Sbjct: 87 DEYGEEGLEGG-----------EQPADASDLFDLIFG----------GGRKPGGKKRGED 125
Query: 125 TATNLQ-----------------------------GEKGSKQDITLSSNQ-------QVH 148
++L+ G K + D L + Q Q+
Sbjct: 126 IVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMG 185
Query: 149 TVVVSLEELYRGCV-KLLTVPVQE-----IDPCSVQLNFINTSKIVHIKIKPGLPEHTVF 202
+++ + C + +P + + T KI+ + I G+P
Sbjct: 186 SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKK-----TRKILEVNIDKGVPNQHKI 240
Query: 203 KFPKEPLEYST--SSEVIVITKDKPHDVFWREGADLHMKKNVSL 244
F E E V+ I +KPHD F REG DL + K +SL
Sbjct: 241 TFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISL 284
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 84.4 bits (209), Expect = 7e-19
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY VLGL +GASD +IK AFRK AI+Y+P++N + +++ F I EAY+VLSD +KA
Sbjct: 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64
Query: 63 IYDQYG 68
YDQ+G
Sbjct: 65 QYDQFG 70
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 82.9 bits (205), Expect = 2e-18
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY +LG++R A+ +IK A+R+ A +Y+P+ N + +++ F I EAY+VLSD ++ +
Sbjct: 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63
Query: 64 YDQYGEENL-----KRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKK 118
YDQ+G ++ + D + FG F ++
Sbjct: 64 YDQFGHAAFSGSGQQQQGQEGFSDFGGGNIE-DILEDVFDIFGFGDIFG---------RR 113
Query: 119 QETSGDTATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSV 177
+ T T + KG +DI TV +SLEE Y G +++ V PC
Sbjct: 114 RATRERRKTYQRPVKG--EDI-------YQTVEISLEEAYTG--TTVSLEVPRYVPCEA 161
Score = 30.5 bits (69), Expect = 0.88
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 219 VITKDKPHDVFWREGADLHMKKNVSLT 245
+I K KPH +F R G +L++ N+++
Sbjct: 260 IIVKVKPHPLFERRGDNLYLDVNITVA 286
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 80.3 bits (198), Expect = 3e-17
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ AS +IK A+RK A++Y+P++N D +++ F + EAYEVLSD ++
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61
Query: 63 IYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTE 103
YD+YG++ G G D RTF FG E
Sbjct: 62 SYDRYGKDGPFAGAGGFGG--AGMGNMEDALRTFMGAFGGE 100
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 78.8 bits (194), Expect = 4e-17
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 46/245 (18%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YYA+LG+ + AS +IK AF+K A +Y+P+ N ++ F I EAY VLSD ++ I
Sbjct: 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64
Query: 64 YDQYGEENLKRGVVTPLGYVPPYEYD------RDTKRTFRNFFGTESPFADLLNAYRPPK 117
YD YG G P PP D D F+ FG F + +
Sbjct: 65 YDTYGTTAASAGWQGPPP-GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVG 123
Query: 118 KQETSGDTATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSV 177
++ G +L+ E + ++LEE YRG K++ V +
Sbjct: 124 RRARKGR---DLEAE-----------------LPLTLEEAYRGGEKVVEVAGER------ 157
Query: 178 QLNFINTSKIVHIKIKPGLPEHTVFKFPKEPLEYSTSSEVIVITKDKPHDVFWREGADLH 237
+ ++I PG+ E V + + ++ ++ + PH VF EG DL+
Sbjct: 158 ----------LSVRIPPGVREGQVIRLAGKG---RQGGDLYLVVRLLPHPVFRLEGDDLY 204
Query: 238 MKKNV 242
+V
Sbjct: 205 ATVDV 209
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 75.2 bits (186), Expect = 7e-17
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 147 VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPK 206
+ + ++LEE Y G K + +P + + K + +KI G+ + +
Sbjct: 4 RYDLELTLEEAYFGKEKEIKIPRKVT--------RVREKKTLTVKIPAGVDDGQRLRLRG 55
Query: 207 E--PLEYSTSS-EVIVITKDKPHDVFWREGADLHMKKNVSLT 245
E ++ V+ + KPH VF R+G DL+ + +SLT
Sbjct: 56 EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLT 97
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 71.1 bits (175), Expect = 2e-16
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFR 60
+YY +LG+ R AS +IK A+RK A++Y+P++N K +A F I EAYEVLSD +
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 76.3 bits (188), Expect = 5e-16
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY VLG++R AS+ +IK A+RK A+QY+P+RN ++ +++ F EAYEVL D ++A
Sbjct: 5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64
Query: 63 IYDQYGEENL 72
YD++G +
Sbjct: 65 RYDRFGHAGV 74
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 76.3 bits (188), Expect = 5e-16
Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKAI 63
YY +LG+TR AS+ +IK ++RK A++Y+P+RN D +++ +F EAYEVLSD ++ I
Sbjct: 6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65
Query: 64 YDQYGEENL 72
YDQYG E L
Sbjct: 66 YDQYGHEGL 74
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 76.8 bits (188), Expect = 6e-16
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY VLG+ R A + +IK AFRK A +Y+P+RN + ++F I EA +VLS+ ++A
Sbjct: 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62
Query: 64 YDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQE 120
YD+YG + + R +++ D +F F ++ + P KK++
Sbjct: 63 YDKYGHDGVDRE--------DDFDFQADVFNSFFEEINKSGEFDNITDDDTPSKKKK 111
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 74.5 bits (182), Expect = 6e-16
Identities = 57/238 (23%), Positives = 87/238 (36%), Gaps = 20/238 (8%)
Query: 3 FNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN--NDVKSQAMFTLICEAYEVLSDKFR 60
+YY +LG+ AS +IK A+RK A++Y+P+RN + ++ F I EAYE+LSD R
Sbjct: 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65
Query: 61 KAIYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQE 120
+A YD+ G +N Y P Y L +R K+ +
Sbjct: 66 RAEYDKIGADN----------YFPGKSYRESAAFP----IEGSLQLTGLYEEWR-GKRNK 110
Query: 121 TSGDTATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLN 180
T + +G S + S R L +E +
Sbjct: 111 TERKASLADLLSRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEALAGVKKAV 170
Query: 181 FINTSKIVHIKIKPGLPEHTVFKFPKEPLEYSTSSEVIVITKD--KPHDVFWREGADL 236
K + IK G E + L+ + + K+ K H F EG D
Sbjct: 171 ARLLGKALKSTIKAGALEGKALRLKGL-LKSARGALGKARLKELSKRHPPFALEGDDK 227
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 75.9 bits (187), Expect = 7e-16
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
M +YY +LG++R ASD +IK A+RK A + +P+ N D ++Q F I AYEVLSD +
Sbjct: 1 MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEK 60
Query: 61 KAIYDQYGE 69
+ I D G+
Sbjct: 61 RRIVDLGGD 69
Score = 33.5 bits (77), Expect = 0.087
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 224 KPHDVFWREGADLHMKKNVSLT 245
+PHDVF R+G DLH +V +
Sbjct: 253 QPHDVFVRDGDDLHCTVSVPMV 274
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 69.1 bits (170), Expect = 9e-16
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNND-VKSQAMFTLICEAYEVLSD 57
+YY +LG+ ASD +IK A+RK A++Y+P++N D +++ F I EAYEVLSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 73.7 bits (181), Expect = 5e-15
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 9/81 (11%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY +LGL++ AS DIK A+RK A++Y+P++N + ++ F I EAY VLSD ++A
Sbjct: 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 64 YD---------QYGEENLKRG 75
YD QY E++ RG
Sbjct: 66 YDRFGHAGIDNQYSAEDIFRG 86
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 72.5 bits (178), Expect = 1e-14
Identities = 29/66 (43%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+ R A++ +IK A+R+ A +Y+P+ N D +++ F I EAYE+LSD ++A
Sbjct: 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65
Query: 63 IYDQYG 68
YDQ+G
Sbjct: 66 QYDQFG 71
Score = 28.2 bits (63), Expect = 4.9
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 218 IVITKDKPHDVFWREGADLHMKKNVSLT 245
IVI K KPH +F REG +++++ ++ T
Sbjct: 264 IVI-KVKPHPLFKREGYNVYLEMPITFT 290
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 72.2 bits (177), Expect = 1e-14
Identities = 31/66 (46%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY VLG+++ A+ +IK A+RKKAIQY+P++N D +++ F EAY+VLSD +++
Sbjct: 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65
Query: 63 IYDQYG 68
YDQ+G
Sbjct: 66 RYDQFG 71
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 71.6 bits (175), Expect = 2e-14
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 26/161 (16%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVK-SQAMFTLICEAYEVLSDKF 59
M +YY +LGL++GAS +IK A+RK AI+Y+P++N K ++++F EAYEVL D
Sbjct: 1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60
Query: 60 RKAIYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQ 119
++A YD++G + G G + F F F D+ +++ +
Sbjct: 61 KRAQYDRFGHTAFEGG-----GGFEGFS------GGFSGFSDIFEDFGDIFDSFFTGNRG 109
Query: 120 ETSGDTATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRG 160
+ N + EKG QD+T + + +SLE+ Y G
Sbjct: 110 QDK-----NRKHEKG--QDLT-------YQIEISLEDAYLG 136
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 71.3 bits (175), Expect = 3e-14
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY LG+++ AS +IK A+RK + +Y+P+ N + ++ + + EAYE LSD ++A Y
Sbjct: 6 YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAY 65
Query: 65 DQYGE 69
DQYG
Sbjct: 66 DQYGA 70
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 71.3 bits (175), Expect = 3e-14
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY VLG+++ AS +IK A+RK + +Y+P+ N + + F I EAYEVLSD ++A
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64
Query: 64 YDQYGEENLKRG 75
YDQ+G +G
Sbjct: 65 YDQFGHAGPNQG 76
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 70.7 bits (173), Expect = 4e-14
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY +LG++R AS +IK A+RK A++Y+P+RN + + F I EAY VLSD ++A
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62
Query: 64 YDQYG 68
YD++G
Sbjct: 63 YDRFG 67
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 70.2 bits (172), Expect = 8e-14
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVK-SQAMFTLICEAYEVLSDKF 59
M +YY VLG++R A +IK A+RK A++Y+P++N D K ++ F + EAYEVLS+
Sbjct: 1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDD 60
Query: 60 RKAIYDQYG 68
++ YDQ+G
Sbjct: 61 KRRRYDQFG 69
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 68.8 bits (168), Expect = 2e-13
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDK 58
M +YY +LG+ R AS DIK AFR+ A +++P+ + K++A F I EAYEVLSD
Sbjct: 1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60
Query: 59 FRKAIYDQYG 68
++ YDQ G
Sbjct: 61 QKRRQYDQTG 70
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 68.9 bits (169), Expect = 2e-13
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
M +YY +LG++R A ++K A+R+ A +Y+P+ N + ++ F I AYEVLSD
Sbjct: 1 MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPET 60
Query: 61 KAIYDQYGEENL 72
+A YDQ+GE +
Sbjct: 61 RARYDQFGEAGV 72
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 68.5 bits (167), Expect = 3e-13
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNN-DVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ A+D +IK A+RK AI+Y+P++N + +S+ F EAYE+L D ++
Sbjct: 5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64
Query: 63 IYDQYGEENLKRG 75
YDQ+G+ + G
Sbjct: 65 AYDQFGKAGVNAG 77
Score = 35.0 bits (80), Expect = 0.033
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 186 KIVHIKIKPGLPEHTVFKFPKE----PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKN 241
+ ++IKI PG+ + K E P ++ V+T K H++F R+G DL + +
Sbjct: 219 RTINIKIPPGVETGSRLKVSGEGEAGP-NGGPHGDLYVVTHIKKHELFERQGNDLILVRK 277
Query: 242 VSLT 245
+SL
Sbjct: 278 ISLA 281
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 66.4 bits (162), Expect = 1e-12
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 19/107 (17%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRK 61
+YY +LG++R A+ +IK A+++ +++P+R+ + + +A F I EAYEVLSD ++
Sbjct: 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64
Query: 62 AIYDQYGEENLKRGVVTPLGYVPPYE-------YDRDTKRTFRNFFG 101
A+YD++G +G PPY+ + D + F N F
Sbjct: 65 AMYDRFGY----------VGEQPPYQETESGGGFFEDIFKDFENIFN 101
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 66.0 bits (161), Expect = 2e-12
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY VLG+ R A +IK A+RK A +Y+P+ + + ++ F I EAY VLSD ++
Sbjct: 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65
Query: 64 YDQYG 68
YDQ+G
Sbjct: 66 YDQFG 70
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 182 INTSKIVHIKIKPGLPEHTVFKFPKEP---LEYSTSSEVIVITKDKPHDVFWREGADLHM 238
+ +K + +KI G+ + + E ++ V+ K KPH +F REGA+L+
Sbjct: 215 VRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYY 274
Query: 239 KKNVS 243
+K +S
Sbjct: 275 EKPIS 279
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 64.7 bits (157), Expect = 5e-12
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKF 59
M +YY +L + + ++ IK ++RK A++Y+P+RN D +++ F LI EAY VLSD+
Sbjct: 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEK 60
Query: 60 RKAIYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQ 119
++A+YD+YG++ L + + + +E D F + FG
Sbjct: 61 KRALYDRYGKKGLNQAGASQSDFSDFFE---DLGSFFEDAFGF----------------- 100
Query: 120 ETSGDTATNLQGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEI 172
G +GSK+ + + + T+ +S +E GC K + V Q +
Sbjct: 101 -----------GARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSV 142
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 63.1 bits (153), Expect = 2e-11
Identities = 73/291 (25%), Positives = 114/291 (39%), Gaps = 63/291 (21%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
M +YY +LG+++ AS D+K A+ K A QY+P+ + ++ F I AY+VL D+ +
Sbjct: 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60
Query: 61 KAIYDQYGEENLK----RGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPP 116
+A YD++G + + RG G P D F +FF S F RP
Sbjct: 61 RAAYDRFGHDAFQNQQSRGGGGNHGGFHP-----DINDIFGDFF---SDFMGGSRRSRPT 112
Query: 117 KKQETSGDTATNL-----QGEKGSKQDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQE 171
+ D NL + G +++I+ SS + T S G K TV
Sbjct: 113 SSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS------GSEKGETVTT-- 164
Query: 172 IDPCS------VQLNFINTSKIVH-----------------------------IKIKPGL 196
D CS +Q F + H + I G+
Sbjct: 165 CDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGV 224
Query: 197 PEHTVFKFPKE---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSL 244
T + E + S ++ V KPHD++ +GA+LH K +S
Sbjct: 225 ENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISF 275
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 62.2 bits (151), Expect = 3e-11
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY VLG+ + A++ +IK A+RK A +Y+P+ N D K++ F I EAY+VLSD+ ++
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69
Query: 63 IYDQ 66
YD+
Sbjct: 70 EYDE 73
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 61.2 bits (148), Expect = 7e-11
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY VLG+ R AS ++K A+RK A +Y+P+ N ++ F + EAY+ LSD +KA
Sbjct: 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64
Query: 64 YDQYGEENLKRG 75
YDQ+G + +G
Sbjct: 65 YDQFGHTDPNQG 76
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 60.0 bits (145), Expect = 2e-10
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YY VLG+++ AS+ +I+ A+RK A QY+P+ N + I EA +VL DK ++
Sbjct: 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64
Query: 64 YDQYG 68
YDQ+G
Sbjct: 65 YDQFG 69
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 57.1 bits (138), Expect = 1e-09
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+YYA++G+ IK A+R+ A +Y+P+ + + ++A F + EA+EVLSD+ R+A
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 64 YDQ 66
YDQ
Sbjct: 65 YDQ 67
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 54.4 bits (131), Expect = 2e-08
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
++Y LG++ AS +IK A+RK A + +P+ N D ++ F + EA++VLSD ++
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69
Query: 63 IYDQ 66
YD+
Sbjct: 70 EYDE 73
Score = 28.2 bits (63), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 214 SSEVIVITKDKPHDVFWREGADLHMKKNVSLT 245
S ++ V +P VF R+G DL + VS T
Sbjct: 273 SGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFT 304
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 47.3 bits (112), Expect = 4e-06
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 2 GFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPER----NNDVKS--QAMFTLICEAYEVL 55
GF+ Y +LG+ + S+ DIK +R +++++P++ N+++S + + I +AY +L
Sbjct: 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLL 156
Query: 56 SDKFRKAIYDQYGEENLKR 74
+DK R+ Y YG + +
Sbjct: 157 TDKKRRENYLNYGTPDSPQ 175
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 37.3 bits (86), Expect = 0.005
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 4 NYYAVLGLTR---GASDYDIKMAFRKKAIQYNPER---NNDVKSQAMFTLICEAYEVLSD 57
+ YA+LGL++ A I A +KK +Y+P++ + F LI +A EVL D
Sbjct: 44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103
Query: 58 KFRKAIYD 65
+ + YD
Sbjct: 104 RKLRLQYD 111
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 37.5 bits (86), Expect = 0.007
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
+Y +LG+ A +I + K A Y P + + + F I EAY++L D +K +Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634
Query: 65 DQYGEENLK 73
+++G + +K
Sbjct: 635 NKFGYDGIK 643
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 32.1 bits (74), Expect = 0.21
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 6 YAVLGLTRGASDYDIKMAFRKKAIQYNP 33
Y VLG++ D +IK A+RK +++P
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHP 230
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 30.0 bits (67), Expect = 1.4
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 87 EYDRDTKRTFRN-FFGTESPFADLLNAYRPPKKQETSGDTATNLQGEKGSKQ---DITLS 142
++D +T F+N F E + Y QE S + L+ + D+
Sbjct: 327 QHDVETNAAFQNPLFNDELKWWLASKRYLTQPLQEMSPSMVSTLENSLLNCPDSLDVDSP 386
Query: 143 SNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVF 202
+ + + + P++ ++P +V L K KPG P
Sbjct: 387 ICLYTKPLSLPHPTSHFFPNE----PIRFVEPYNVSLVLTPNENDTDKKYKPGKPSKAPS 442
Query: 203 KFPKEPLEYSTSSEV 217
K P +PL +S+ +
Sbjct: 443 KKPDDPLSRFSSARI 457
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 9 LGLTRGA-SDY-DIKMAFRKKAIQYNPER-NNDVKSQAMFTL 47
LGL R A + ++ A+ +K ++++P++ ++ K + + TL
Sbjct: 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTL 52
>gnl|CDD|223947 COG1015, DeoB, Phosphopentomutase [Carbohydrate transport and
metabolism].
Length = 397
Score = 27.2 bits (61), Expect = 8.8
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 139 ITLSSNQQV-----HTVVVSLEELYRGC 161
I +S V H V LEELY C
Sbjct: 154 IVYTSADSVFQIAAHEEVFGLEELYELC 181
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 27.3 bits (61), Expect = 9.1
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 9 LGLTRGA-SDY-DIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIYDQ 66
LGL A + ++ A+ +K +Y+P++ D + M L L K ++ +
Sbjct: 17 LGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD--EEKMKRLNS-----LYKKLQEGVKSA 69
Query: 67 YGEENLKRGVVTPLGYVPPYEY 88
+ P P +E
Sbjct: 70 RQSFGTQDSSEIPTYGTPEWEQ 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,997,074
Number of extensions: 1192759
Number of successful extensions: 993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 61
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)