RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2268
(261 letters)
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 104 bits (261), Expect = 5e-29
Identities = 37/75 (49%), Positives = 55/75 (73%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
MG +YY LGL RGASD +IK A+R++A++Y+P++N + ++ F I EAY+VLSD +
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 61 KAIYDQYGEENLKRG 75
+ I+D+YGEE LK
Sbjct: 61 REIFDRYGEEGLKGS 75
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 104 bits (262), Expect = 1e-26
Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 36/250 (14%)
Query: 1 MGF-NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKF 59
M +YYA+LG+ IK A+R+ A +Y+P+ + + ++A F + EA+EVL D+
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQ 84
Query: 60 RKAIYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQ 119
R+A YDQ + P +R ++ F D+ +
Sbjct: 85 RRAEYDQLWQH-----------RNDP---GFGRQRQTHEQSYSQQDFDDIFS-------- 122
Query: 120 ETSGDTATNLQGEKGSK-QDITLSSNQQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQ 178
G A + + ++ D+ V V LEE + ++ + +
Sbjct: 123 SMFGQQAHQRRRQHAARGHDLE-------IEVAVFLEETLAEQTRTISYNLPVYN-VFGM 174
Query: 179 LNFINTSKIVHIKIKPGLPEHTVFKFP---KEPLEYSTSSEVIVITKDKPHDVFWREGAD 235
+ T K +++KI G+ + + + ++ ++ PH +F G +
Sbjct: 175 IE-SETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHN 233
Query: 236 LHMKKNVSLT 245
L + ++
Sbjct: 234 LEIVLPLAPW 243
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 96.2 bits (240), Expect = 8e-26
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRKA 62
YY VLG+ AS DIK A+RK A++++P++N D K +A F L+ EAYEVLSD +++
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 63 IYDQYGEENLKRG 75
+YD+ G ++ + G
Sbjct: 71 LYDRAGCDSWRAG 83
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 95.9 bits (239), Expect = 1e-25
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRKA 62
YY +L + R AS DIK A+R+KA+Q++P++N D K A F + EAYEVLSDK ++
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 63 IYDQYGEENLKRGVVTP 79
IYD+YG E L P
Sbjct: 64 IYDRYGREGLTGTGTGP 80
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 93.1 bits (232), Expect = 1e-24
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRKA 62
YY VL + R AS IK A+RK A++++P++N + K +A F + EAYEVLSD ++
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 63 IYDQYGEENLK 73
IYD+YG
Sbjct: 71 IYDRYGSGPSS 81
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 93.6 bits (233), Expect = 1e-24
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKF 59
G + Y VLGL + A+ DIK ++RK A++Y+P++N ++ ++ F I A+ +L+D
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 60 RKAIYDQYGEENLKRG 75
++ IYD+YG L
Sbjct: 75 KRNIYDKYGSLGLYVA 90
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 90.9 bits (226), Expect = 7e-24
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
+ F+ Y VLG++R AS DIK A++K A +++P++N D ++ F I +AYE+LS++ +
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74
Query: 61 KAIYDQYGEENLK 73
+ YD YG
Sbjct: 75 RTNYDHYGSGPSS 87
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 90.8 bits (226), Expect = 9e-24
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY +LG+ + AS+ IK AF K A++Y+P++N ++A F I EAYE LSD R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 65 DQYGEE 70
D G
Sbjct: 69 DTLGHS 74
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 90.0 bits (224), Expect = 1e-23
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY +LG++RGASD D+K A+R+ A++++P++N+ + F I AY VLS+ ++ Y
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 65 DQYGEE 70
DQ+G
Sbjct: 69 DQFGSG 74
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 93.0 bits (231), Expect = 3e-23
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKAI 63
+Y++LG+++ AS +I+ AF+K A++ +P++N N+ + F I AYEVL D+ +
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 64 YDQYGEENLKRGVVTPLGYVPPYEYD-RDTKRTFRNFFGTESPFADLLNAYRPP 116
YD+YGE+ L+ Y YD F +N+
Sbjct: 64 YDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELW 117
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 89.3 bits (222), Expect = 3e-23
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
Y +LG++ A++ ++K +RK A++Y+P++ + F I EA+E+L+D ++ IY
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK--FKEISEAFEILNDPQKREIY 67
Query: 65 DQYGEENLKRGVVTP 79
DQYG E + G +
Sbjct: 68 DQYGLEAARSGGPSF 82
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 89.2 bits (222), Expect = 5e-23
Identities = 29/65 (44%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKAI 63
YY +LG+++ A + +I+ A+++ A++Y+P+RN D +++A F I EAYEVL+D ++A
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 64 YDQYG 68
YDQYG
Sbjct: 65 YDQYG 69
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 87.5 bits (217), Expect = 2e-22
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKAI 63
Y +LG+ A+ IK A+ ++ Y+P+RN ++ FT I +AY VL +
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 64 YDQYG 68
YD+
Sbjct: 79 YDRGL 83
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 87.5 bits (217), Expect = 4e-22
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKAI 63
YY +LG +S I F+ +A++ +P+++ + K+ F + +A E+L+++ +A
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 64 YDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNF 99
YD + P++ + +
Sbjct: 82 YDHWRRS----------QMSMPFQQWEALNDSVKTS 107
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 85.8 bits (213), Expect = 6e-22
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKAI 63
YY +LG+ R AS +IK A+ + A +Y+P+ N +D K++ F+ + EAYEVLSD+ ++
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 64 YDQYG 68
YD YG
Sbjct: 69 YDAYG 73
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 84.2 bits (209), Expect = 2e-21
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIY 64
YY VLG+ ASD ++K A+RK A++++P++N D F I +AYEVLSD+ ++ IY
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIY 67
Query: 65 DQYGEE 70
DQ GEE
Sbjct: 68 DQGGEE 73
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 84.4 bits (209), Expect = 5e-21
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 4 NYYAVLGLTRGASDYD-IKMAFRKKAIQYNPERNNDVKSQAM----FTLICEAYEVLSDK 58
N Y VL + R D + A+R A +++P+R + + + + F +I AYE L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 59 FRKAIYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADL 109
K YD Y + P + + + +R P DL
Sbjct: 76 EAKTNYDYYLDH--------------PDQRFYNYYQYYRLRAA---PKVDL 109
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 80.5 bits (199), Expect = 7e-20
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNND-------VKSQAMFTLICEAYEVLSD 57
+Y++LG A+ D+K ++K + Y+P++ + + F I +A+++L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 58 KFRKAIYDQYG 68
+ K YD
Sbjct: 78 EETKKKYDLQR 88
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 82.2 bits (203), Expect = 1e-19
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKS-------QAMFTLICEAYEVLS 56
++Y++LG A+ D+K ++K + Y+P++ + F I +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 57 DKFRKAIYDQYGEENLKRG 75
++ K YD E+ R
Sbjct: 71 NEETKREYDLQRCEDDLRN 89
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 81.1 bits (201), Expect = 3e-19
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 147 VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPK 206
+ VSLE+L+ G K + + + + I++KPG T +
Sbjct: 4 QVNLPVSLEDLFVGKKKSFKIG------RKGP-HGASEKTQIDIQLKPGWKAGTKITYKN 56
Query: 207 E---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLT 245
+ + + + ++K H F R+G DL +S
Sbjct: 57 QGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFK 98
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 78.6 bits (194), Expect = 4e-19
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 5 YYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQA--MFTLICEAYEVLSDKFRKA 62
+V+ + + K R+ ++++P++N + A +F + L ++A
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQA 74
Query: 63 IYDQYGEENLKRG 75
DQ + +R
Sbjct: 75 FLDQNADRASRRT 87
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 80.4 bits (199), Expect = 8e-19
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 147 VHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPK 206
H + VSLEE+Y GC K + + + ++P + N KI+ I++K G E T FPK
Sbjct: 6 THDLRVSLEEIYSGCTKKMKISHKRLNPDGKSI--RNEDKILTIEVKKGWKEGTKITFPK 63
Query: 207 E--PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLT 245
E + ++++ + KDKPH++F R+G+D+ +SL
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLR 104
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 79.2 bits (196), Expect = 2e-18
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 148 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKE 207
++V+LEELY G K + V + V N IV ++IKPG + T + E
Sbjct: 8 VPLLVTLEELYLGKRKKIKVTRKRFIEHKV----RNEENIVEVEIKPGWKDGTKLTYSGE 63
Query: 208 ---PLEYSTSSEVIVITKDKPHDVFWREGADLHMKKNVSLT 245
++ ++++I + K H F R+ L MK + L
Sbjct: 64 GDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV 104
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 75.7 bits (186), Expect = 4e-17
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 4 NYYAVLGLTRGA--SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRK 61
+LGL R A + ++ A+ KK +++P++ D + + Y+ + D +
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKY 68
Query: 62 AIYDQYGE 69
A +G
Sbjct: 69 AHQPDFGG 76
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 73.7 bits (181), Expect = 6e-17
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 4 NYYAVLGLTRGA--SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRK 61
+LGL R A + ++ A+ KK +++P++ D + + Y+ + D +
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKY 65
Query: 62 AIYDQYGEENLKRGVVTP 79
A +G + T
Sbjct: 66 AHQPDFGGFWDATEIPTY 83
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 69.8 bits (171), Expect = 9e-16
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+ + +LG+ GAS ++ A+RK A+ +P++ S+ F + A L +
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87
Query: 64 YD 65
Sbjct: 88 SS 89
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 70.6 bits (172), Expect = 5e-14
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
N+Y++LG+++ AS +I+ AF+K A++ +P++N N+ + F I AYEVL D+ +
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 63 IYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFAD 108
YD+YGE+ L+ Y YD E D
Sbjct: 82 KYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFD 127
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 67.4 bits (165), Expect = 4e-13
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPER----NNDVKSQAMFTLICEAYEVLSDKF 59
+YY +LG+ R A +I A+RK A+Q++P+ K++ F I A EVLSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 60 RKAIYDQ 66
+ +D
Sbjct: 443 MRKKFDD 449
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 50.3 bits (120), Expect = 1e-08
Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 5 YYAVLGLTRGA--SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKA 62
+L L R ++ A++++++ +P++ A+ + + +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNL 69
Query: 63 IYDQYGEEN 71
+ G
Sbjct: 70 RMNLGGTGF 78
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 51.9 bits (124), Expect = 1e-08
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 4 NYYAVLGLTRGAS--DYDIKMAFRKKAIQYNPERNNDV------KSQAMFTLICEAYEVL 55
+Y+ + GL + + F+ QY+P++ + I +A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 56 SDKFRKAIYD 65
+A Y
Sbjct: 62 RHPLMRAEYL 71
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 51.1 bits (122), Expect = 3e-08
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 4 NYYAVLGLTRGAS--DYDIKMAFRKKAIQYNPERNNDV------KSQAMFTLICEAYEVL 55
NY+ + GL + FR +++P+ + I +AY+ L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64
Query: 56 SDKFRKAIYDQY 67
D R+A Y
Sbjct: 65 KDPLRRAEYLLS 76
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 48.2 bits (114), Expect = 5e-07
Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 4 NYYAVLGLTRG--ASDYDIKMAFRKKAIQYNPERNNDV------KSQAMFTLICEAYEVL 55
+Y++++ R ++ +++ +P+ + S+ TL+ +AY+ L
Sbjct: 44 DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103
Query: 56 SDKFRKAIYD 65
+ +Y
Sbjct: 104 LAPLSRGLYL 113
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 47.7 bits (113), Expect = 6e-07
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 4 NYYAVLGLTR--GASDYDI-----KMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLS 56
+Y + T + I + +R+ Q++P+ + + +AY L
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLK 69
Query: 57 DKFRKAIYDQYGEENL 72
D R++ Y N+
Sbjct: 70 DPLRRSQYMLKLLRNI 85
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 47.1 bits (111), Expect = 7e-07
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 2 GFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQ----AMFTLICEAYEVLSD 57
G + +G+ + +K +RK + +P++ + +F + +A+ +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175
Query: 58 KFRKAIY 64
+ +K +Y
Sbjct: 176 QGQKPLY 182
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 48.0 bits (115), Expect = 8e-07
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 182 INTSKIVHIKIKPGLPEHTVFKFPKE--PLEYSTSSEVIVITKDKPHDVFWREGADLHMK 239
N KI+ + ++PG+ + F E +V+ I ++PH F R+G DL +
Sbjct: 108 ENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYE 167
Query: 240 KNVSLT 245
+ L
Sbjct: 168 AEIDLL 173
Score = 36.0 bits (84), Expect = 0.006
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 147 VHTVVVSLEELYRGCVKLLTVPVQEI-DPCS 176
H + SLEELY+G L + Q + C
Sbjct: 15 KHEISASLEELYKGRTAKLALNKQILCKECE 45
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 43.1 bits (102), Expect = 3e-06
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 5 YYAVLGLTRGA-SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDK 58
+L LT + +K RK + +P++ S + T I EA + L +
Sbjct: 16 ALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG---SPFLATKINEAKDFLEKR 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 4e-05
Identities = 38/272 (13%), Positives = 73/272 (26%), Gaps = 79/272 (29%)
Query: 3 FNYYAVLGLTRGA-SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRK 61
F+ V + + S +I ++ + +F + E + KF +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIM--------SKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 62 A--------IYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFFGTESPFADLLNAY 113
+ E + ++T + Y RD + FA N
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRM-----YIEQRD------RLYNDNQVFAKY-NVS 132
Query: 114 RPPKKQE-----TSGDTATN--LQGEKGS-KQ--------D-------------ITLSSN 144
R + A N + G GS K + L +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 145 QQVHTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKP---GL----- 196
TV+ L++L T ++++ I +K KP L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 197 ---PEH-TVFKFPKEPLEYSTSSEVIVITKDK 224
+ F S ++++ T+ K
Sbjct: 253 VQNAKAWNAFNL---------SCKILLTTRFK 275
Score = 28.3 bits (62), Expect = 3.1
Identities = 26/195 (13%), Positives = 52/195 (26%), Gaps = 51/195 (26%)
Query: 8 VLGLTRGASDYDIKMAFRKKAIQYNPERN--NDVKSQAMFTLI--CEAYE---------- 53
+L TR D A I + + +++ C +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 54 ----VLSDKFRKAI-----YDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFRNFF---- 100
++++ R + + + L + + L + P EY ++ F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY----RKMFDRLSVFPP 383
Query: 101 GTESPFADLLNAYRPPKKQETSGDTATNLQG----EKGSKQ------DITLSSNQQ---- 146
P LL+ + L EK K+ I L +
Sbjct: 384 SAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 147 --VHTVVVSLEELYR 159
+H +V + Y
Sbjct: 443 YALHRSIV---DHYN 454
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.006
Identities = 46/281 (16%), Positives = 83/281 (29%), Gaps = 117/281 (41%)
Query: 4 NYYA---VLGLT--------RGASDY--DIKMAFRKKAIQYNPERNNDVKS-QAMFTLIC 49
+Y +LG T +GA+ + + A AI + S ++ F +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV---AIA-------ETDSWESFFVSVR 297
Query: 50 EAYEVLSDKFRKAIYDQYGEENLKRGV----VTPLGYVPPYEYDRDTKRTFRNFFGTESP 105
+A VL F I GV P +PP + + N G SP
Sbjct: 298 KAITVL---FF--I-----------GVRCYEAYPNTSLPP----SILEDSLENNEGVPSP 337
Query: 106 --------------FADLLNAYRPPKKQETSGDTATNLQGEKGSKQDITL--SSNQQVHT 149
+ + N++ P KQ ++ I+L +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQ---------VE--------ISLVNGAKN---- 376
Query: 150 VVVS--LEELYRGCVKLLTVPVQ-EIDPCSVQLNFINTSKIVHIKIKP---------GLP 197
+VVS + LY + L +D Q S+I + K P
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLD----Q------SRIPFSERKLKFSNRFLPVASP 426
Query: 198 EHTVFKFPKEPLEYSTSSEVIVITKDKPHDVFWREGADLHM 238
H+ + ++ ++V + D+ +
Sbjct: 427 FHS---------HLLVPASDLINKDLVKNNVSFN-AKDIQI 457
Score = 35.4 bits (81), Expect = 0.019
Identities = 34/256 (13%), Positives = 67/256 (26%), Gaps = 94/256 (36%)
Query: 41 SQA----MFTLICEAYEVLSDKFRKAIYDQ--------YG-------EENLKRGVVTPLG 81
SQ M + Y+ S + ++++ YG N + G
Sbjct: 1626 SQEQGMGM-----DLYKT-SKAAQD-VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 82 YVPPYEYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQETSGDTATNLQGEKGSKQDITL 141
+ + F D K+ T+ + EKG ++
Sbjct: 1679 EKGKRIRENYSAMIFETI-------VDGKLKTEKIFKEINEHSTSYTFRSEKG---LLSA 1728
Query: 142 SSNQQV---------------------------HTV-----------VVSLEEL-----Y 158
+ Q H++ V+S+E L Y
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 159 RGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPK-------EPLE- 210
RG + VP E+ + + IN ++ + + + +E
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVA-----ASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 211 --YSTSSEVIVITKDK 224
Y+ ++ V D
Sbjct: 1844 VNYNVENQQYVAAGDL 1859
Score = 32.7 bits (74), Expect = 0.13
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 58/123 (47%)
Query: 51 AYEVLSDKFRKAI---YDQYGEEN-------LKRGVVTPLGYV-------PPYEYDRDTK 93
L ++F K + + + ++ L V LGYV ++D+
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAEL---VGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 94 RTFRNFFGTESPFADLLNAYRPPKKQETSGDTATNLQGEKGSKQDITLSSNQQVHTVVVS 153
F E+ + L+G DI H +
Sbjct: 86 LCLTEF---ENCY----------------------LEGN-----DI--------HALAAK 107
Query: 154 LEE 156
L +
Sbjct: 108 LLQ 110
Score = 31.9 bits (72), Expect = 0.26
Identities = 35/226 (15%), Positives = 57/226 (25%), Gaps = 123/226 (54%)
Query: 42 Q-AMFTLICEAYEVLSDKFRKAIYDQYGEENLK-RGVVTP--------LGYVPPYEYDRD 91
Q A+ + KA + E+LK +G++ LG EY
Sbjct: 1733 QPALTLM------------EKAAF-----EDLKSKGLIPADATFAGHSLG-----EY--- 1767
Query: 92 TKRTFRNFFGTES---------PFADLLN--AYR-------PPKKQETSGDT---ATNLQ 130
+ L+ YR P+ + + A N
Sbjct: 1768 ------------AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 131 --GEKGSKQDITL-------------------SSNQQVHTVVVS-----LEELYRGCVKL 164
S++ + NQQ V + L+ +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY---VAAGDLRALDTV------- 1865
Query: 165 LTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKEPLE 210
+V LNFI KI I+ L + E +E
Sbjct: 1866 ----------TNV-LNFIKLQKIDIIE----LQK----SLSLEEVE 1892
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 33.8 bits (77), Expect = 0.012
Identities = 7/67 (10%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 6 YAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICE-AYEVLSDKFRKAIY 64
+ + L ++ ++++ + +P++ + A + E +E+L + +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEA-----W 97
Query: 65 DQYGEEN 71
D +
Sbjct: 98 DHFNTLG 104
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 28.7 bits (65), Expect = 0.77
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 225 PHDVFWREGADLHMKKNVSLT 245
H +F G +L + ++
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPW 23
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 28.4 bits (64), Expect = 1.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 229 FWREGADLHMKKNVSLT 245
F R+G DL + + L
Sbjct: 2 FKRDGDDLVYEAEIDLL 18
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding
protein, DPS, dodecameric, ferritin; 2.0A {Bacillus
subtilis}
Length = 153
Score = 27.7 bits (62), Expect = 2.5
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 33 PERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+ N+ + M + Y+ +S + + I
Sbjct: 89 TDGGNETSASEMVQALVNDYKQISSESKFVI 119
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 27.9 bits (62), Expect = 3.1
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 165 LTVPVQEIDP-----CSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKEPLEYSTSSEVIV 219
L + + C+ T + V P E + + V +
Sbjct: 68 LPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTL 127
Query: 220 ---ITKDKPHDVF---WREGADLHMKKNVSLTPQERNQKYTTRMFTVS 261
P DV + +L +K ++ ++ + TT S
Sbjct: 128 TCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTS 175
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 27.7 bits (62), Expect = 4.3
Identities = 9/55 (16%), Positives = 12/55 (21%), Gaps = 6/55 (10%)
Query: 43 AMFTLICEAYEVLSDKFRKAIYDQYGEENLKRGVVTPLGYVPPYEYDRDTKRTFR 97
+ E +L + E PL Y YD D
Sbjct: 219 GLMAAYAEGLNILHHA------NAGKEGQGADAETAPLRNPDFYRYDLDLADITE 267
>2c41_A DPS family DNA-binding stress response protein;
iron-binding/oxidation protein, DPS (DNA-binding
proteins from starved cells); HET: PG4 PGE; 1.81A
{Thermosynechococcus elongatus}
Length = 158
Score = 26.9 bits (60), Expect = 4.3
Identities = 2/31 (6%), Positives = 10/31 (32%)
Query: 33 PERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
+ + + M +E++ + +
Sbjct: 87 TPSSGQLTVKQMIEEAIANHELIITEMHQDA 117
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein;
1.85A {Staphylococcus aureus subsp}
Length = 156
Score = 26.9 bits (60), Expect = 4.5
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 33 PERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
E ++ M + + + +S + AI
Sbjct: 84 KEAAKGYSAEQMVEELSQDFTNISKQLENAI 114
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A
{Bacillus anthracis} SCOP: a.25.1.1
Length = 142
Score = 26.9 bits (60), Expect = 4.6
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 33 PERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
E ++ M I + YE++ + +K +
Sbjct: 78 QEAAYGETAEGMVEAIMKDYEMMLVELKKGM 108
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A
{Bacillus anthracis} SCOP: a.25.1.1
Length = 146
Score = 26.9 bits (60), Expect = 4.8
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 33 PERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
E + ++ M + Y L + ++ +
Sbjct: 82 NEGTSKESAEEMVQTLVNDYSALIQELKEGM 112
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 26.0 bits (58), Expect = 5.7
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 152 VSLEELYRGCVKLLTVPVQEI-DPCS 176
++ + +G K TV + + + C+
Sbjct: 10 LTFNQAAKGVNKEFTVNIMDTCERCN 35
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU
genomics, center for structural genomics of infectious
DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Length = 159
Score = 26.5 bits (59), Expect = 5.8
Identities = 3/31 (9%), Positives = 13/31 (41%)
Query: 33 PERNNDVKSQAMFTLICEAYEVLSDKFRKAI 63
E + + ++ + + + +L + R +
Sbjct: 95 KEHTDSIDGRSSMQGLVDGFSILLHQQRDIL 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,878,753
Number of extensions: 221603
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 61
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)