RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2268
(261 letters)
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 81.3 bits (200), Expect = 9e-21
Identities = 37/75 (49%), Positives = 55/75 (73%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFR 60
MG +YY LGL RGASD +IK A+R++A++Y+P++N + ++ F I EAY+VLSD +
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 61 KAIYDQYGEENLKRG 75
+ I+D+YGEE LK
Sbjct: 61 REIFDRYGEEGLKGS 75
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 71.6 bits (175), Expect = 4e-17
Identities = 29/72 (40%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERN-NDVKSQAMFTLICEAYEVLSDKFRKA 62
+YY +LG+++ A + +I+ A+++ A++Y+P+RN D +++A F I EAYEVL+D ++A
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 63 IYDQYGEENLKR 74
YDQYG ++
Sbjct: 64 AYDQYGHAAFEQ 75
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 69.3 bits (169), Expect = 6e-16
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 1 MGFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNND-------VKSQAMFTLICEAYE 53
+ ++Y++LG A+ D+K ++K + Y+P++ + + F I +A++
Sbjct: 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 54 VLSDKFRKAIYDQYG 68
+L ++ K YD
Sbjct: 74 ILGNEETKKKYDLQR 88
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 60.1 bits (145), Expect = 1e-12
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 4 NYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKS--QAMFTLICEAYEVLSDKFRK 61
+V+ + + K R+ ++++P++N + +F + L +
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---Q 73
Query: 62 AIYDQYGEENLKR 74
A DQ + +R
Sbjct: 74 AFLDQNADRASRR 86
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 58.9 bits (142), Expect = 3e-12
Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 4 NYYAVLGLTRGA--SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRK 61
+L L R ++ A++++++ +P++ A+ + + +
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYN 68
Query: 62 AIYDQYG 68
+ G
Sbjct: 69 LRMNLGG 75
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 58.1 bits (140), Expect = 5e-12
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 4 NYYAVLGLTRGAS--DYDIKMAFRKKAIQYNPERNNDVKS------QAMFTLICEAYEVL 55
+Y+ + GL + + F+ QY+P++ I +A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 56 SDKFRKAIYD 65
+A Y
Sbjct: 62 RHPLMRAEYL 71
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 58.4 bits (141), Expect = 6e-12
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 2 GFNYYAVLGLTRGASDYDIKMAFRKKAIQYNPERNNDVKSQ----AMFTLICEAYEVLSD 57
G + +G+ + +K +RK + +P++ + +F + +A+ +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91
Query: 58 KFRKAIY 64
+ +K +Y
Sbjct: 92 QGQKPLY 98
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 54.8 bits (131), Expect = 2e-10
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 4 NYYAVLGLTRGA--SDYDIKMAFRKKAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRK 61
+LGL R A + ++ A+ KK +++P++ D + + Y+ + D +
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKY 65
Query: 62 AIYDQYGEENLKRGVVTPLG---YVPPYEYDRDTKRTFRNFFGTESPF 106
A +G + T ++ + ++
Sbjct: 66 AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 43.4 bits (102), Expect = 1e-06
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 148 HTVVVSLEELYRGCVKLLTVPVQEIDPCSVQLNFINTSKIVHIKIKPGLPEHTVFKFPKE 207
+ VSLE+L+ G K + + S + I++KPG T + +
Sbjct: 5 VNLPVSLEDLFVGKKKSFKIGRKGPHGAS-------EKTQIDIQLKPGWKAGTKITYKNQ 57
Query: 208 ---PLEYSTSSEVIVITKDKPH 226
+ + + ++K H
Sbjct: 58 GDYNPQTGRRKTLQFVIQEKSH 79
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 26.1 bits (57), Expect = 1.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 229 FWREGADLHMKKNVSLT 245
F R+G DL +S
Sbjct: 2 FKRDGDDLIYTLPLSFK 18
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 25.7 bits (56), Expect = 2.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 229 FWREGADLHMKKNVSLT 245
F R+G DL + + L
Sbjct: 2 FKRDGDDLVYEAEIDLL 18
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 327
Score = 25.6 bits (55), Expect = 7.3
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 27 KAIQYNPERNNDVKSQAMFTLICEAYEVLSDKFRKAIYDQYGEENLKRGVVTPLGYVPPY 86
+ + E + L YE + DK + + + G++
Sbjct: 128 SKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLE-----EHGLLYVRVLGEDD 182
Query: 87 EYDRDTKRTFRNFFGTESPFADLLNAYRPPKKQETSGD 124
+ R +++ F T A K E + D
Sbjct: 183 DPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTED 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,709
Number of extensions: 43511
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 13
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)