BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy227
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 316

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 26/116 (22%)

Query: 17  NGTREQGIVYALGSAAITYTLARGCADGTIFHCSCATPSKKATAKAIKNSFQWGGCGDNV 76
           + TRE   V+A+ SA + YTL R C+ G   +C C         +     + WGGC DN 
Sbjct: 59  SATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGC---DDSRNGRIGGRGWVWGGCSDNA 115

Query: 77  RWGAQFARSFTDILENERDIQTQRNLRLIDAAMFDEKNNRNYMLNVMNLHNNKAGR 132
            +G + ++ F D LE  +D +                        +MNLHNN+AGR
Sbjct: 116 EFGERISKLFVDGLETGQDARA-----------------------LMNLHNNEAGR 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,468
Number of Sequences: 62578
Number of extensions: 131218
Number of successful extensions: 179
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 1
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)